******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:27800315-27800815 1.0000 100 chr21:31557556-31558056 1.0000 100 chr20:62386422-62386922 1.0000 100 chr8:142816933-142817433 1.0000 100 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chr16:87383801-87384301 1.0000 100 chr19:34999371-34999871 1.0000 100 chr12:130764505-13076500 1.0000 100 chr12:6829010-6829510 1.0000 100 chr6:3227056-3227556 1.0000 100 chr5:109409253-109409753 1.0000 100 chr17:76671125-76671625 1.0000 100 chr17:45148457-45148957 1.0000 100 chr12:580706-581206 1.0000 100 chr1:93078929-93079429 1.0000 100 chr15:74889935-74890435 1.0000 100 chr16:58392289-58392789 1.0000 100 chr1:29236975-29237475 1.0000 100 chr5:179678142-179678642 1.0000 100 chr12:570479-570979 1.0000 100 chr17:74872471-74872971 1.0000 100 chr21:32392464-32392964 1.0000 100 chr19:36772282-36772782 1.0000 100 chr1:182391385-182391885 1.0000 100 chr16:22297257-22297757 1.0000 100 chr1:228458210-228458710 1.0000 100 chr4:189234913-189235413 1.0000 100 chr17:81253420-81253920 1.0000 100 chr7:129054502-129055002 1.0000 100 chr15:65869675-65870175 1.0000 100 chr19:38800818-38801318 1.0000 100 chr19:39397430-39397930 1.0000 100 chr22:50675322-50675822 1.0000 100 chr16:30874970-30875470 1.0000 100 chr17:17693838-17694338 1.0000 100 chr19:33778321-33778821 1.0000 100 chr1:31413654-31414154 1.0000 100 chr8:27310676-27311176 1.0000 100 chr16:57628626-57629126 1.0000 100 chr1:229625052-229625552 1.0000 100 chr1:244451479-244451979 1.0000 100 chr15:75368347-75368847 1.0000 100 chr19:35557339-35557839 1.0000 100 chr16:2459405-2459905 1.0000 100 chr1:3321686-3322186 1.0000 100 chr17:42567142-42567642 1.0000 100 chr1:26788218-26788718 1.0000 100 chr8:37513911-37514411 1.0000 100 chr5:176591612-176592112 1.0000 100 chr14:19374373-19374873 1.0000 100 chr10:88880122-88880622 1.0000 100 chr21:36069965-36070465 1.0000 100 chr19:40349663-40350163 1.0000 100 chr17:58006925-58007425 1.0000 100 chr17:76736824-76737324 1.0000 100 chr19:39823962-39824462 1.0000 100 chr18:49019533-49020033 1.0000 100 chr1:8026665-8027165 1.0000 100 chr9:133030738-133031238 1.0000 100 chr18:63198247-63198747 1.0000 100 chr19:36488778-36489278 1.0000 100 chr12:5796193-5796693 1.0000 100 chr1:163321554-163322054 1.0000 100 chr10:93209012-93209512 1.0000 100 chr19:37371322-37371822 1.0000 100 chr1:225653510-225654010 1.0000 100 chr19:30435112-30435612 1.0000 100 chr17:40140253-40140753 1.0000 100 chr12:57111934-57112434 1.0000 100 chr1:92832044-92832544 1.0000 100 chr19:1383486-1383986 1.0000 100 chr21:36135193-36135693 1.0000 100 chr1:236097031-236097531 1.0000 100 chr18:50281096-50281596 1.0000 100 chr19:33273953-33274453 1.0000 100 chr16:1271720-1272220 1.0000 100 chr12:2255729-2256229 1.0000 100 chr8:28401254-28401754 1.0000 100 chr19:36214000-36214500 1.0000 100 chr4:49709150-49709650 1.0000 100 chrUn_GL000216v2:243-743 1.0000 100 chr19:2524521-2525021 1.0000 100 chr19:43640045-43640545 1.0000 100 chr17:78558266-78558766 1.0000 100 chrUn_KI270467v1:2090-25 1.0000 100 chrUn_KI270467v1:3138-36 1.0000 100 chrUn_KI270467v1:2926-34 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.193 C 0.307 G 0.307 T 0.193 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.198 C 0.302 G 0.302 T 0.198 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTGTGTGTGTGTGTG MEME-1 width = 22 sites = 102 llr = 1574 E-value = 3.8e-275 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::122:111111112:::::1 pos.-specific C 1:::2111::1:11211:1::: probability G 1928:6261818:8:619:a:9 matrix T 7181617171618:628:9:91 bits 2.3 2.1 1.9 * * 1.6 * *** Relative 1.4 * **** Entropy 1.2 ** * ****** (22.3 bits) 0.9 *** * * ** * * ****** 0.7 ***** * ******* ****** 0.5 ***** ********* ****** 0.2 ********************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:33273953-33274453 + 50 3.49e-14 GCTGAGTCtg tgtgtgtgtgtgtgtgtgtgtg cgtgcgtgtg chr12:57111934-57112434 - 14 3.49e-14 CGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TAGTCTTGTG chr17:76671125-76671625 + 70 3.49e-14 AAAGCAAGGg tgtgtgtgtgtgtgtgtgtgtg tgtCTTGGC chr16:981035-981535 + 48 3.49e-14 CGAGACGGGC tgtgtgtgtgtgtgtgtgtgtg agagagagag chr8:37701159-37701659 + 23 3.49e-14 AGACAGGGCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr7:100478129-100478629 + 23 3.49e-14 agagagagag tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr17:6069531-6070031 + 45 3.49e-14 GGTGATCCGg tgtgtgtgtgtgtgtgtgtgtg tgtgcgtgcg chr1:10793941-10794441 + 37 3.49e-14 tgtgtatgcg tgtgtgtgtgtgtgtgtgtgtg CGCGCGCGCG chr9:129607281-129607781 + 2 3.49e-14 g tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr16:323566-324066 - 13 3.49e-14 TTTGTTGGTG TGTGTGTGTGTGTGTGTGTGTG TGGTGGAGTC chr6:166008638-166009138 + 24 1.62e-13 CCGCACAgtg tgtgtgtatgtgtgtgtgtgtg agtgcgcgcg chr10:122703391-12270389 - 56 2.07e-13 TATATGTGTC TGTGTGTGTGTTTGTGTGTGTG TGTATATGTG chr12:580706-581206 + 49 1.32e-12 tgtgtattca tgtgtgtttgtgtgtatgtgtg tgtccatgtc chr16:75233826-75234326 - 72 3.46e-12 GTTCACG TGTGCTTGTGTGTGTGTGTGTG TCCACGTGTG chr8:37513911-37514411 - 14 1.30e-11 TGTGTGCATG TGTGTCTGTGTATGTGTGTGTG TGCATGTGTG chr12:6829010-6829510 + 62 1.30e-11 GGACGGGAAg tgtgcgtgggtgtgtgtgtgtg tcgggggtgg chr2:234969697-234970197 - 63 1.30e-11 TATGTGGGAG TGTGTGTGAGAGTGTGTGTGTG TGAGAGACAG chr12:5796193-5796693 - 40 1.81e-11 CAAGAGTGGG TGTGTGTGTGAGTGCATGTGTG TGAGTGTAAG chr19:39157985-39158485 + 31 2.12e-11 catgtgtggg tgtgcgtgtgtgtgcatgtgtg tgcGCGCATG chr19:12984352-12984852 + 4 3.39e-11 GAG TGTGTGTATGGGTGTATGTGTG TCTGTGATGG chr18:63198247-63198747 - 66 3.95e-11 TGTGTGTCAA TGTGTGTCTGTGTCTATGTGTG TCTGTGTGTC chr22:27093398-27093898 - 60 4.59e-11 GTGTATTGGG TGTGCATGTATGTGTGTGTGTG TTCTGTGTGA chr1:228781979-228782479 + 16 5.33e-11 ctgtgtgtgt agtgtgtgtgtgtgtgtgtgta gtctgtgtgt chr8:142816933-142817433 - 59 5.33e-11 AGTGCATGTC TGTGTGTGAGTGTGCATGTGTG GGAGTGTGTG chr15:70530162-70530662 - 60 7.16e-11 TGTGGCTGTG TGTGTCTGTGTGTCCGTGTGTG TGTCTGTGTG chr19:33249636-33250136 - 47 7.16e-11 GTGCGTGTGG TGTGTATCTATGTGTGTGTGTG GTGTGTGTGT chr7:100650171-100650671 - 51 8.35e-11 ACCGTGTGTT TGTGAGTGTGTTTGCATGTGTG ACCGTGAGTG chr12:6778630-6779130 - 79 1.33e-10 . TGTGTGTGTGTGTGCGTGTGCG CGCGCGCGTG chr17:15465225-15465725 - 17 1.54e-10 ATCTCCGTTA TGTGTGTCTGTGTGTTGGTGTG TCTGGTACTG chr17:82281389-82281889 + 15 2.05e-10 tgtccatatg tgtgcgtgtgtgcctgtgtgtg catgtgtgtc chr8:37785267-37785767 - 37 2.37e-10 TGTGTGTGTA TGTGTAGGTATGTGTATGTGTG TCTGTGTATG chr16:11171687-11172187 - 36 2.73e-10 CATGCACACT TGTATGTGTGAGTGTGTATGTG TACTGGTGTG chr16:57628626-57629126 + 67 4.12e-10 tgagagtgtg agtgtgtgagtgtgagtgtgtg agagtgagtg chr7:104932901-104933401 - 26 5.38e-10 TGTATATGCC TGTGTGTATGCGTGTGTGTATG CATGCATGTA chr19:38111784-38112284 - 14 5.38e-10 CATACGTGTG TGTGCATGTGTGTGCCTGTGTG CAGGTGTGTG chr19:30375663-30376163 + 7 1.18e-09 taggcg cgtgtgtgtgcgtgtgtgtgtt agggatacgt chr19:28427436-28427936 - 29 1.53e-09 GTGCTGCATG TGTGAGTCTGTGTGAGGGTGTG TGGCTCTGCA chrX:118218024-118218524 + 42 1.53e-09 tgtatgtgta tgtacgtgtgcgtatgtgtgtg catgtgtctg chr15:66932591-66933091 - 4 1.74e-09 TATGCATGTG TGTGAGCGTGTGTGAGCGTGTG CAT chr19:33778321-33778821 - 70 1.98e-09 GTGTGTGTC TGTGCGTCTGTGCCTGTGTGTG TGCATGCATT chr10:46525211-46525711 - 49 2.87e-09 GGGTGTATGT ATTGTGTGTGGTTGTGTGTGTG ATGTGTGTTT chr1:21651290-21651790 - 79 3.65e-09 . TGTTTCTGTGTCTGTGTGTGTT CCCATTGCGT chr17:44590595-44591095 + 7 4.63e-09 gtctag tgtgttcatgtgtgtttgtgta ttgtctagtg chr16:2027327-2027827 + 25 5.86e-09 tgcttttgcc tgggtgtgtgtgtacacgtgtg cgtgtgAACA chr1:27528322-27528822 + 51 5.86e-09 ACGAGCCCAA GGGGTGTGTGTGTGTCCGTGTG CGCGTCCATG chr6:150016345-150016845 - 31 1.04e-08 TTCTCCCATG TGTTTCTGTGTGTCTTTTTGTG TGCCCGTGTA chr8:28401254-28401754 + 9 1.17e-08 tatgtgtg ggtgcgcgagtgtgtatgtgtg tgacgcgtgt chr14:102776614-10277711 + 44 1.31e-08 gcgtgcgcac ggtgttggtgagcgtgtgtgtg cgtgtccgCT chr14:19374373-19374873 + 3 1.64e-08 TG TGTTCATGTGTGTGATGGTGTG TCCATGTGAC chr10:21173421-21173921 - 28 1.83e-08 AAGCAATGAG TGGGTCGGTGCGTGTGCGTGTG CCTTGGCACG chr19:37371322-37371822 + 31 2.27e-08 TGACATTGTG TGTTTGTGTAAATGCATGTGTG TGGTTATGTG chr18:49019533-49020033 + 49 2.27e-08 ggtatgtgag tgtgagtgaatgagagtgtgtg atgtggcgtg chr2:172098537-172099037 + 10 2.53e-08 AGTGTGTGA TGTGACGGTGTTCGAGTGTGTG TCATTGTGTG chr1:47591840-47592340 + 39 2.53e-08 gtgagtctga ggtgaaggtgagtgtgcgtgtg taactgtgtt chr9:135967494-135967994 + 79 3.13e-08 GGTGGGGGTG AGTGTGCAGGCgtgtgtgtgtg chr11:73376983-73377483 + 78 3.13e-08 gtggggtcaa gtggtgtcagtgtgtgtgtgtg t chr19:2524521-2525021 + 10 3.48e-08 CAGTGTGCA CGTGTGTATGTGCACGTGTGTG GACACGGCAC chr7:150003326-150003826 + 76 3.48e-08 gtgtgtggta tgttatctggtgtgtgtgtgtg tgg chr16:85522838-85523338 + 10 5.27e-08 tttgtgtgc tgtgtggctatgtgtgcatgtg actgtgttgt chr18:33577680-33578180 + 6 7.16e-08 GTGTG TGTGAGTGAGTGTGCACGCGTG AGCGCACAGG chr16:85245683-85246183 + 13 9.66e-08 tgtgtgcgtg tgtgtcgaggtgtctacgtgtg tgtggggagg chr2:241864216-241864716 + 18 1.07e-07 tgtgtgctgt gtgtactgtgtgtgtttgtgtg tgatatgtgt chr19:36214000-36214500 - 44 1.18e-07 CTCCAAGGTG TGTGCGTGGTTTTGGTTGTGTG ACACTGTGGC chr5:1929088-1929588 + 24 1.18e-07 atgtggcatg tttgttgtgttttgtgtgtgtg gtgtgtgttg chr3:14403086-14403586 + 64 1.43e-07 tccccgtttg tgtctgcatgaatctgtgtgtg GGGGGCTGCG chr19:37293451-37293951 - 16 1.57e-07 TTTCTGTCTC TGTCCGTCTGTGTGTGCGTGCG CCTTGGGACA chr5:171493868-171494368 - 61 1.73e-07 CAGGCATGTG TGTGTTGTGTGTTGTGTGTGTG TGCTCACAAG chr19:36528838-36529338 + 17 2.30e-07 TGTGTGACTG TGTAACGCTGTGTGAGGGTGTG GGTTAGCTGT chr15:70097501-70098001 - 78 3.03e-07 G CGTGCGCGCGTGTGTGTGTGTT GGGTGTGTGT chr1:3321686-3322186 + 7 3.64e-07 tgtgtt tgtgtttgtaggagcacgtgtg taaagggcac chr16:57802617-57803117 - 54 3.64e-07 GCGTGAGAAG TGTATGTGTGAGTACTCGCGTG GAAGTTTTGC chr8:28254105-28254605 - 2 4.77e-07 TAGGCACATG TGTACGTGTGGATGCATGTATG T chr18:33578952-33579452 + 45 7.40e-07 GCATGTGGGC TAGGTGGTTGCGTGTCTGTGTG CCATGTCGTG chr1:223558454-223558954 + 44 8.79e-07 acatggtgtg tgtgaatggtgtactgtgtgtg tactgtatga chr16:86932041-86932541 + 35 1.04e-06 gagtgtgaga tgtgtgtgtgaggtatggtgtg tgagatgtga chr5:10548560-10549060 + 35 1.23e-06 TTAGTGCATG TCGGCATGTGTTAGCATGTGTG TCGGCATGTG chr19:36686865-36687365 - 40 1.34e-06 GAGCCTTTTA GGTCTGTGGTGTTGTGTGTGTA ACGGGTAAAG chr1:228782288-228782788 + 71 1.71e-06 gtctgtatgt atggtctttgtgtgtgtgtggt ctgtgtgt chrX:153382858-153383358 - 65 2.18e-06 TGGGTTGTGT GGGGTGTGTTTTCGTGTGTGGT GTATGTGGTG chr12:132597532-13259803 + 22 2.36e-06 tctctgtgta tctctgtctctgtctttgtgtg tctctgtctc chr19:6229582-6230082 - 50 2.56e-06 GGTGTGTGGT GTGTCATGTGTATGTACGTGTG TTGTGTGTGG chr19:36849658-36850158 - 15 2.77e-06 AACCGCGTGC GGGTCAGATTGGTGTGTGTGTG AGAGAAGTGA chr1:29236975-29237475 + 76 3.23e-06 TTTTGAGATC CGTGTACATGTGTGAAGGCGTG GGA chr19:29715312-29715812 - 13 3.77e-06 GGGGCCCGGA TGTGATCATGCGTGCGCGTGGG AGAAAGGCAG chr22:50247612-50248112 - 18 3.77e-06 TGGGGCCGCA TCTACACCTGTGCCTGTGTGTG CCTGACCTGC chr1:8026665-8027165 + 4 4.39e-06 gtg tggaccggtgagcgactgtgtg ggacagtgcg chr16:86224535-86225035 + 31 5.11e-06 gtgttgctgt tgtttttggtagtgacggtgtt gctgttggtg chr6:38702509-38703009 - 18 5.92e-06 GCGACCCTGT TTTGAATTGGCTTGTTTATGTT GCGACGGTGG chr16:30065813-30066313 - 38 6.38e-06 TCAGGCTGGA GGGGCCGGGGAGCCTGTGTGTG CCTGGTAGTG chr18:2656035-2656535 + 1 8.53e-06 . CGGGATTTCGCGCGTGTGTGTG TCAGGTACGC chr12:5865357-5865857 - 69 1.06e-05 AATGCATGAT GGTGTGATGGTATGATGGTGTG ATGGCATGAT chr22:50675322-50675822 + 2 1.21e-05 t gggcagtgtgcgagcatgtgta gtgagcaggc chr19:37779124-37779624 - 5 1.21e-05 ACAGCAGAGG AGGGTATTTGAGTGCGCACGTG AGAG chr1:226309344-226309844 - 61 1.30e-05 TTTCGGGAAC TGTGAGTATTTCACTTTGCGTA GAGCCCCCTC chr5:856472-856972 - 43 1.39e-05 GTGTATTGTG TGTATTGTGTGGTCCCTGTGTG GTATGGGGAG chr16:68264650-68265150 + 32 2.23e-05 ACGCGGCGAG TGTGAGGGAGACCGGGGGTGTG TGTGGAGAGG chr4:189234913-189235413 + 59 3.51e-05 GTGGTGGTGT TTGGTGTAGTTGCATTTGTGCT CTGTGGTGGT chr1:40783172-40783672 - 35 3.74e-05 TGTAGACCGG TGGAACGGCGTCTACTTGTGTG TGCAGGGTGG chr3:12841172-12841672 - 11 3.74e-05 TCAGCGCGGT AGTGTCTGTGGGTATTGTTATT GTCAGCTTAC chr16:31179920-31180420 + 70 6.88e-05 TCGTTGCTTG CTTGCCTGTGCGCGCGTGCGCG GACATGGCC chrUn_KI270467v1:2926-34 + 72 1.15e-04 ttttatgtac agtatataatatttattttgtg tcctttg chr10:102394507-10239500 - 57 2.98e-04 CACAGGTACA GGTGTACGTACGGGTCCGCGTA TCTTTGTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:33273953-33274453 3.5e-14 49_[+1]_29 chr12:57111934-57112434 3.5e-14 13_[-1]_65 chr17:76671125-76671625 3.5e-14 69_[+1]_9 chr16:981035-981535 3.5e-14 47_[+1]_31 chr8:37701159-37701659 3.5e-14 22_[+1]_56 chr7:100478129-100478629 3.5e-14 22_[+1]_56 chr17:6069531-6070031 3.5e-14 44_[+1]_34 chr1:10793941-10794441 3.5e-14 36_[+1]_42 chr9:129607281-129607781 3.5e-14 1_[+1]_77 chr16:323566-324066 3.5e-14 12_[-1]_66 chr6:166008638-166009138 1.6e-13 23_[+1]_55 chr10:122703391-12270389 2.1e-13 55_[-1]_23 chr12:580706-581206 1.3e-12 48_[+1]_30 chr16:75233826-75234326 3.5e-12 71_[-1]_7 chr8:37513911-37514411 1.3e-11 13_[-1]_65 chr12:6829010-6829510 1.3e-11 61_[+1]_17 chr2:234969697-234970197 1.3e-11 62_[-1]_16 chr12:5796193-5796693 1.8e-11 39_[-1]_39 chr19:39157985-39158485 2.1e-11 30_[+1]_48 chr19:12984352-12984852 3.4e-11 3_[+1]_75 chr18:63198247-63198747 3.9e-11 65_[-1]_13 chr22:27093398-27093898 4.6e-11 59_[-1]_19 chr1:228781979-228782479 5.3e-11 15_[+1]_63 chr8:142816933-142817433 5.3e-11 58_[-1]_20 chr15:70530162-70530662 7.2e-11 59_[-1]_19 chr19:33249636-33250136 7.2e-11 46_[-1]_32 chr7:100650171-100650671 8.4e-11 50_[-1]_28 chr12:6778630-6779130 1.3e-10 78_[-1] chr17:15465225-15465725 1.5e-10 16_[-1]_62 chr17:82281389-82281889 2.1e-10 14_[+1]_64 chr8:37785267-37785767 2.4e-10 36_[-1]_42 chr16:11171687-11172187 2.7e-10 35_[-1]_43 chr16:57628626-57629126 4.1e-10 66_[+1]_12 chr7:104932901-104933401 5.4e-10 25_[-1]_53 chr19:38111784-38112284 5.4e-10 13_[-1]_65 chr19:30375663-30376163 1.2e-09 6_[+1]_72 chr19:28427436-28427936 1.5e-09 28_[-1]_50 chrX:118218024-118218524 1.5e-09 41_[+1]_37 chr15:66932591-66933091 1.7e-09 3_[-1]_75 chr19:33778321-33778821 2e-09 69_[-1]_9 chr10:46525211-46525711 2.9e-09 48_[-1]_30 chr1:21651290-21651790 3.7e-09 78_[-1] chr17:44590595-44591095 4.6e-09 6_[+1]_72 chr16:2027327-2027827 5.9e-09 24_[+1]_54 chr1:27528322-27528822 5.9e-09 50_[+1]_28 chr6:150016345-150016845 1e-08 30_[-1]_48 chr8:28401254-28401754 1.2e-08 8_[+1]_70 chr14:102776614-10277711 1.3e-08 43_[+1]_35 chr14:19374373-19374873 1.6e-08 2_[+1]_76 chr10:21173421-21173921 1.8e-08 27_[-1]_51 chr19:37371322-37371822 2.3e-08 30_[+1]_48 chr18:49019533-49020033 2.3e-08 48_[+1]_30 chr2:172098537-172099037 2.5e-08 9_[+1]_69 chr1:47591840-47592340 2.5e-08 38_[+1]_40 chr9:135967494-135967994 3.1e-08 78_[+1] chr11:73376983-73377483 3.1e-08 77_[+1]_1 chr19:2524521-2525021 3.5e-08 9_[+1]_69 chr7:150003326-150003826 3.5e-08 75_[+1]_3 chr16:85522838-85523338 5.3e-08 9_[+1]_69 chr18:33577680-33578180 7.2e-08 5_[+1]_73 chr16:85245683-85246183 9.7e-08 12_[+1]_66 chr2:241864216-241864716 1.1e-07 17_[+1]_61 chr19:36214000-36214500 1.2e-07 43_[-1]_35 chr5:1929088-1929588 1.2e-07 23_[+1]_55 chr3:14403086-14403586 1.4e-07 63_[+1]_15 chr19:37293451-37293951 1.6e-07 15_[-1]_63 chr5:171493868-171494368 1.7e-07 60_[-1]_18 chr19:36528838-36529338 2.3e-07 16_[+1]_62 chr15:70097501-70098001 3e-07 77_[-1]_1 chr1:3321686-3322186 3.6e-07 6_[+1]_72 chr16:57802617-57803117 3.6e-07 53_[-1]_25 chr8:28254105-28254605 4.8e-07 1_[-1]_77 chr18:33578952-33579452 7.4e-07 44_[+1]_34 chr1:223558454-223558954 8.8e-07 43_[+1]_35 chr16:86932041-86932541 1e-06 34_[+1]_44 chr5:10548560-10549060 1.2e-06 34_[+1]_44 chr19:36686865-36687365 1.3e-06 39_[-1]_39 chr1:228782288-228782788 1.7e-06 70_[+1]_8 chrX:153382858-153383358 2.2e-06 64_[-1]_14 chr12:132597532-13259803 2.4e-06 21_[+1]_57 chr19:6229582-6230082 2.6e-06 49_[-1]_29 chr19:36849658-36850158 2.8e-06 14_[-1]_64 chr1:29236975-29237475 3.2e-06 75_[+1]_3 chr19:29715312-29715812 3.8e-06 12_[-1]_66 chr22:50247612-50248112 3.8e-06 17_[-1]_61 chr1:8026665-8027165 4.4e-06 3_[+1]_75 chr16:86224535-86225035 5.1e-06 30_[+1]_48 chr6:38702509-38703009 5.9e-06 17_[-1]_61 chr16:30065813-30066313 6.4e-06 37_[-1]_41 chr18:2656035-2656535 8.5e-06 [+1]_78 chr12:5865357-5865857 1.1e-05 68_[-1]_10 chr22:50675322-50675822 1.2e-05 1_[+1]_77 chr19:37779124-37779624 1.2e-05 4_[-1]_74 chr1:226309344-226309844 1.3e-05 60_[-1]_18 chr5:856472-856972 1.4e-05 42_[-1]_36 chr16:68264650-68265150 2.2e-05 31_[+1]_47 chr4:189234913-189235413 3.5e-05 58_[+1]_20 chr1:40783172-40783672 3.7e-05 34_[-1]_44 chr3:12841172-12841672 3.7e-05 10_[-1]_68 chr16:31179920-31180420 6.9e-05 69_[+1]_9 chrUn_KI270467v1:2926-34 0.00012 71_[+1]_7 chr10:102394507-10239500 0.0003 56_[-1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTGTGTGTGTGTGTG width=22 seqs=102 chr19:33273953-33274453 ( 50) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111934-57112434 ( 14) TGTGTGTGTGTGTGTGTGTGTG 1 chr17:76671125-76671625 ( 70) TGTGTGTGTGTGTGTGTGTGTG 1 chr16:981035-981535 ( 48) TGTGTGTGTGTGTGTGTGTGTG 1 chr8:37701159-37701659 ( 23) TGTGTGTGTGTGTGTGTGTGTG 1 chr7:100478129-100478629 ( 23) TGTGTGTGTGTGTGTGTGTGTG 1 chr17:6069531-6070031 ( 45) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:10793941-10794441 ( 37) TGTGTGTGTGTGTGTGTGTGTG 1 chr9:129607281-129607781 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr16:323566-324066 ( 13) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:166008638-166009138 ( 24) TGTGTGTATGTGTGTGTGTGTG 1 chr10:122703391-12270389 ( 56) TGTGTGTGTGTTTGTGTGTGTG 1 chr12:580706-581206 ( 49) TGTGTGTTTGTGTGTATGTGTG 1 chr16:75233826-75234326 ( 72) TGTGCTTGTGTGTGTGTGTGTG 1 chr8:37513911-37514411 ( 14) TGTGTCTGTGTATGTGTGTGTG 1 chr12:6829010-6829510 ( 62) TGTGCGTGGGTGTGTGTGTGTG 1 chr2:234969697-234970197 ( 63) TGTGTGTGAGAGTGTGTGTGTG 1 chr12:5796193-5796693 ( 40) TGTGTGTGTGAGTGCATGTGTG 1 chr19:39157985-39158485 ( 31) TGTGCGTGTGTGTGCATGTGTG 1 chr19:12984352-12984852 ( 4) TGTGTGTATGGGTGTATGTGTG 1 chr18:63198247-63198747 ( 66) TGTGTGTCTGTGTCTATGTGTG 1 chr22:27093398-27093898 ( 60) TGTGCATGTATGTGTGTGTGTG 1 chr1:228781979-228782479 ( 16) AGTGTGTGTGTGTGTGTGTGTA 1 chr8:142816933-142817433 ( 59) TGTGTGTGAGTGTGCATGTGTG 1 chr15:70530162-70530662 ( 60) TGTGTCTGTGTGTCCGTGTGTG 1 chr19:33249636-33250136 ( 47) TGTGTATCTATGTGTGTGTGTG 1 chr7:100650171-100650671 ( 51) TGTGAGTGTGTTTGCATGTGTG 1 chr12:6778630-6779130 ( 79) TGTGTGTGTGTGTGCGTGTGCG 1 chr17:15465225-15465725 ( 17) TGTGTGTCTGTGTGTTGGTGTG 1 chr17:82281389-82281889 ( 15) TGTGCGTGTGTGCCTGTGTGTG 1 chr8:37785267-37785767 ( 37) TGTGTAGGTATGTGTATGTGTG 1 chr16:11171687-11172187 ( 36) TGTATGTGTGAGTGTGTATGTG 1 chr16:57628626-57629126 ( 67) AGTGTGTGAGTGTGAGTGTGTG 1 chr7:104932901-104933401 ( 26) TGTGTGTATGCGTGTGTGTATG 1 chr19:38111784-38112284 ( 14) TGTGCATGTGTGTGCCTGTGTG 1 chr19:30375663-30376163 ( 7) CGTGTGTGTGCGTGTGTGTGTT 1 chr19:28427436-28427936 ( 29) TGTGAGTCTGTGTGAGGGTGTG 1 chrX:118218024-118218524 ( 42) TGTACGTGTGCGTATGTGTGTG 1 chr15:66932591-66933091 ( 4) TGTGAGCGTGTGTGAGCGTGTG 1 chr19:33778321-33778821 ( 70) TGTGCGTCTGTGCCTGTGTGTG 1 chr10:46525211-46525711 ( 49) ATTGTGTGTGGTTGTGTGTGTG 1 chr1:21651290-21651790 ( 79) TGTTTCTGTGTCTGTGTGTGTT 1 chr17:44590595-44591095 ( 7) TGTGTTCATGTGTGTTTGTGTA 1 chr16:2027327-2027827 ( 25) TGGGTGTGTGTGTACACGTGTG 1 chr1:27528322-27528822 ( 51) GGGGTGTGTGTGTGTCCGTGTG 1 chr6:150016345-150016845 ( 31) TGTTTCTGTGTGTCTTTTTGTG 1 chr8:28401254-28401754 ( 9) GGTGCGCGAGTGTGTATGTGTG 1 chr14:102776614-10277711 ( 44) GGTGTTGGTGAGCGTGTGTGTG 1 chr14:19374373-19374873 ( 3) TGTTCATGTGTGTGATGGTGTG 1 chr10:21173421-21173921 ( 28) TGGGTCGGTGCGTGTGCGTGTG 1 chr19:37371322-37371822 ( 31) TGTTTGTGTAAATGCATGTGTG 1 chr18:49019533-49020033 ( 49) TGTGAGTGAATGAGAGTGTGTG 1 chr2:172098537-172099037 ( 10) TGTGACGGTGTTCGAGTGTGTG 1 chr1:47591840-47592340 ( 39) GGTGAAGGTGAGTGTGCGTGTG 1 chr9:135967494-135967994 ( 79) AGTGTGCAGGCGTGTGTGTGTG 1 chr11:73376983-73377483 ( 78) GTGGTGTCAGTGTGTGTGTGTG 1 chr19:2524521-2525021 ( 10) CGTGTGTATGTGCACGTGTGTG 1 chr7:150003326-150003826 ( 76) TGTTATCTGGTGTGTGTGTGTG 1 chr16:85522838-85523338 ( 10) TGTGTGGCTATGTGTGCATGTG 1 chr18:33577680-33578180 ( 6) TGTGAGTGAGTGTGCACGCGTG 1 chr16:85245683-85246183 ( 13) TGTGTCGAGGTGTCTACGTGTG 1 chr2:241864216-241864716 ( 18) GTGTACTGTGTGTGTTTGTGTG 1 chr19:36214000-36214500 ( 44) TGTGCGTGGTTTTGGTTGTGTG 1 chr5:1929088-1929588 ( 24) TTTGTTGTGTTTTGTGTGTGTG 1 chr3:14403086-14403586 ( 64) TGTCTGCATGAATCTGTGTGTG 1 chr19:37293451-37293951 ( 16) TGTCCGTCTGTGTGTGCGTGCG 1 chr5:171493868-171494368 ( 61) TGTGTTGTGTGTTGTGTGTGTG 1 chr19:36528838-36529338 ( 17) TGTAACGCTGTGTGAGGGTGTG 1 chr15:70097501-70098001 ( 78) CGTGCGCGCGTGTGTGTGTGTT 1 chr1:3321686-3322186 ( 7) TGTGTTTGTAGGAGCACGTGTG 1 chr16:57802617-57803117 ( 54) TGTATGTGTGAGTACTCGCGTG 1 chr8:28254105-28254605 ( 2) TGTACGTGTGGATGCATGTATG 1 chr18:33578952-33579452 ( 45) TAGGTGGTTGCGTGTCTGTGTG 1 chr1:223558454-223558954 ( 44) TGTGAATGGTGTACTGTGTGTG 1 chr16:86932041-86932541 ( 35) TGTGTGTGTGAGGTATGGTGTG 1 chr5:10548560-10549060 ( 35) TCGGCATGTGTTAGCATGTGTG 1 chr19:36686865-36687365 ( 40) GGTCTGTGGTGTTGTGTGTGTA 1 chr1:228782288-228782788 ( 71) ATGGTCTTTGTGTGTGTGTGGT 1 chrX:153382858-153383358 ( 65) GGGGTGTGTTTTCGTGTGTGGT 1 chr12:132597532-13259803 ( 22) TCTCTGTCTCTGTCTTTGTGTG 1 chr19:6229582-6230082 ( 50) GTGTCATGTGTATGTACGTGTG 1 chr19:36849658-36850158 ( 15) GGGTCAGATTGGTGTGTGTGTG 1 chr1:29236975-29237475 ( 76) CGTGTACATGTGTGAAGGCGTG 1 chr19:29715312-29715812 ( 13) TGTGATCATGCGTGCGCGTGGG 1 chr22:50247612-50248112 ( 18) TCTACACCTGTGCCTGTGTGTG 1 chr1:8026665-8027165 ( 4) TGGACCGGTGAGCGACTGTGTG 1 chr16:86224535-86225035 ( 31) TGTTTTTGGTAGTGACGGTGTT 1 chr6:38702509-38703009 ( 18) TTTGAATTGGCTTGTTTATGTT 1 chr16:30065813-30066313 ( 38) GGGGCCGGGGAGCCTGTGTGTG 1 chr18:2656035-2656535 ( 1) CGGGATTTCGCGCGTGTGTGTG 1 chr12:5865357-5865857 ( 69) GGTGTGATGGTATGATGGTGTG 1 chr22:50675322-50675822 ( 2) GGGCAGTGTGCGAGCATGTGTA 1 chr19:37779124-37779624 ( 5) AGGGTATTTGAGTGCGCACGTG 1 chr1:226309344-226309844 ( 61) TGTGAGTATTTCACTTTGCGTA 1 chr5:856472-856972 ( 43) TGTATTGTGTGGTCCCTGTGTG 1 chr16:68264650-68265150 ( 32) TGTGAGGGAGACCGGGGGTGTG 1 chr4:189234913-189235413 ( 59) TTGGTGTAGTTGCATTTGTGCT 1 chr1:40783172-40783672 ( 35) TGGAACGGCGTCTACTTGTGTG 1 chr3:12841172-12841672 ( 11) AGTGTCTGTGGGTATTGTTATT 1 chr16:31179920-31180420 ( 70) CTTGCCTGTGCGCGCGTGCGCG 1 chrUn_KI270467v1:2926-34 ( 72) AGTATATAATATTTATTTTGTG 1 chr10:102394507-10239500 ( 57) GGTGTACGTACGGGTCCGCGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 8.58869 E= 3.8e-275 -133 -236 -114 188 -433 -336 153 -116 -1332 -1332 -78 206 -101 -262 134 -116 -16 -55 -1332 164 -33 -104 96 -87 -433 -149 -86 186 -53 -149 110 -87 -116 -336 -104 189 -133 -494 139 -75 -43 -136 -162 169 -175 -295 136 -63 -175 -125 -394 201 -153 -125 138 -333 -63 -55 -394 171 -9 -214 96 -33 -1332 -104 -162 193 -233 -1332 162 -275 -1332 -214 -1332 224 -275 -1332 168 -1332 -1332 -295 -336 224 -175 -1332 150 -116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 102 E= 3.8e-275 0.078431 0.058824 0.137255 0.725490 0.009804 0.029412 0.872549 0.088235 0.000000 0.000000 0.176471 0.823529 0.098039 0.049020 0.764706 0.088235 0.176471 0.205882 0.000000 0.617647 0.156863 0.147059 0.588235 0.107843 0.009804 0.107843 0.166667 0.715686 0.137255 0.107843 0.647059 0.107843 0.088235 0.029412 0.147059 0.735294 0.078431 0.009804 0.794118 0.117647 0.147059 0.117647 0.098039 0.637255 0.058824 0.039216 0.774510 0.127451 0.058824 0.127451 0.019608 0.794118 0.068627 0.127451 0.784314 0.019608 0.127451 0.205882 0.019608 0.647059 0.186275 0.068627 0.588235 0.156863 0.000000 0.147059 0.098039 0.754902 0.039216 0.000000 0.931373 0.029412 0.000000 0.068627 0.000000 0.931373 0.029412 0.000000 0.970588 0.000000 0.000000 0.039216 0.029412 0.931373 0.058824 0.000000 0.852941 0.088235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- TGTG[TC]GTGTGTGTG[TC]GTGTGTG -------------------------------------------------------------------------------- Time 417.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CACASACACACANRCACACRCA MEME-2 width = 22 sites = 65 llr = 953 E-value = 9.9e-124 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:9:7171627241a:a:518 pos.-specific C 8:8:5171617:318:9:7:81 probability G 1::1311:22::231::::3:: matrix T 1:2:21112112221:1:311: bits 2.3 * * 2.1 * * * 1.9 * * * 1.6 * * * * Relative 1.4 * * * * Entropy 1.2 * * * *** * (21.2 bits) 0.9 * * * * * **** ** 0.7 **** *** *** ******** 0.5 **** *** *** ******** 0.2 ************ ********* 0.0 ---------------------- Multilevel CACACACACACACACACACACA consensus G G TGG TG sequence TT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr8:37701159-37701659 - 51 8.08e-14 CACACACACA CACACACACACAAACACACACA CACACACACA chr7:100478129-100478629 - 45 8.08e-14 GTTTCACACA CACACACACACACACACACACA CACACACACA chr6:166008638-166009138 - 78 1.76e-12 G CACATACACACATGCACACACA GGCACATGCA chr12:580706-581206 - 19 4.42e-12 CATGAATACA CACAGACACACAGGCACACACA CACAAACATA chr8:37513911-37514411 + 60 1.00e-11 cagagataca cacagatacacagacacacaca gagacacaca chr10:122703391-12270389 + 18 2.20e-11 tacacaaatg catacatacacatacacataca tatacacaca chr15:66932591-66933091 + 50 4.52e-11 cacacatgct cacacacatgcattcacacaca tggtcacaca chr1:10793941-10794441 - 9 6.38e-11 CACACGCATA CACATACAAACACGCACACACA CGCGCACA chr17:15465225-15465725 + 65 7.58e-11 caacaccaga catacaaacacagacacacaca acacagaccc chr18:63198247-63198747 + 42 1.25e-10 cagagacaca cacagacacacattgacacaca gacacacata chr19:33273953-33274453 - 74 1.72e-10 CACCC CACACCCACACAGACACACGCA CGCACACACA chr8:37785267-37785767 + 59 3.73e-10 tacctacaca tacacacacatatgcacataca caCACATACT chr7:100650171-100650671 + 4 3.73e-10 aga cacacataaacacacacatgca ttcacactat chr7:104932901-104933401 + 74 5.02e-10 catgcacatg cacacatatacacatacacgca tacat chr19:33249636-33250136 + 13 5.02e-10 acacaccaca cacagacacacagatacacacc tcacacacac chr17:82281389-82281889 - 65 5.81e-10 CACAGGAACA CACAGGCACACATGCACACATA CGGACATAGG chr8:142816933-142817433 + 33 7.75e-10 cttacacaag cacatgcacacatgtacacaca ctcccacaca chrX:118218024-118218524 - 18 8.93e-10 CACGTACATA CACATACATGCACACATACACA CCCCCCATAT chr12:5796193-5796693 + 72 1.18e-09 cccactcttg cacatacacacacacaaactca caacaca chr2:234969697-234970197 + 23 1.35e-09 cactctgtca cacacacacatttgcatacaca cacactccct chr16:57628626-57629126 - 21 3.01e-09 CTCACGCTCA CACACTCACACTCTCACACTCA CACTATTCCC chr19:38111784-38112284 + 69 3.88e-09 tccacacatg cacacacacgtatgcacacacc atgcgtccgc chr15:70530162-70530662 + 27 6.38e-09 aacacacact cacagacacacagatacacaac acacacagac chr12:6778630-6779130 + 53 8.13e-09 cgcacgtgca cacacacatgcacacacacgcg cgcgcgcaca chr2:172098537-172099037 - 64 1.03e-08 CATACTGATA CACACTCTCACAGTCACACTCA TGCTCAAATA chr16:85522838-85523338 - 63 1.16e-08 ACACAGGCCA CACACAACCACAACCACACGCA CACAACACAC chr17:44590595-44591095 - 35 1.84e-08 CACTAGACAC AATACACACACATGCACACACT AGACAATACA chr16:75233826-75234326 + 48 2.06e-08 cacgtggacg cacacacacactagcacacgtg gacacacaca chr6:150016345-150016845 + 3 2.57e-08 ta cagacacagccatgcacataca cgggcacaca chr18:49019533-49020033 - 79 3.97e-08 . CACATGCTCATTCACACACGCA CGCCACATCA chr19:12984352-12984852 - 52 3.97e-08 ACAACATTCA CACAAACTCACAATCACACCCA ACAACACAGC chr8:28254105-28254605 + 42 4.41e-08 tatgcacata aacatgcatgcatgcaCACACA CGATTCCCTA chr19:30375663-30376163 - 60 4.90e-08 AACACACGTG CACAGGCACATGAGCACACACA GTCACACTAA chr16:11171687-11172187 + 68 5.44e-08 agtgtgcatg catagtcacactcccacacata cacaatcaca chr1:21651290-21651790 + 52 6.03e-08 CTCACCTCCC cacacatgcacatggacacgca atgggaacac chr19:36528838-36529338 - 67 6.03e-08 AACATATGGT CACAGAGTTACAATCACACACC CACCGCGGGC chr19:2524521-2525021 - 74 7.41e-08 GCATG CACACACCCATAGTGACATGCA TGCCCACACA chr19:39157985-39158485 - 9 7.41e-08 CACACGCACA CCCACACATGCACATACATGCA CGCTCACA chr19:36214000-36214500 + 2 1.48e-07 C CAcacagtcacaggcacaggca attgcacacg chr5:10548560-10549060 - 59 1.63e-07 AACACATGCC GACACACATGCTAACACATGCC GACACACATG chr1:47591840-47592340 - 77 1.79e-07 CT CACAGACCCACACGCACATTAC ACACACAACA chr9:129607281-129607781 - 24 2.60e-07 GTTCGCCTAG CCAAGATAGACACACACACACA CACACACACA chr8:28401254-28401754 - 42 2.85e-07 CGAGTGCACT CACACGTGCGCATACACACGTA CACACGCGTC chr19:36488778-36489278 + 79 4.46e-07 tgtaccgggt cacagtcacgatcacacattaa chr19:33778321-33778821 + 44 4.46e-07 aacacgaacg cacacgcgcaaacacaaatgca tgcacacaca chr1:3321686-3322186 - 65 5.30e-07 CCCACACAAA TATACAGTCTCATGTACATACA TGCATGCCAA chr14:102776614-10277711 - 3 5.78e-07 CGTACCAGGC CACGCACCCTCGCGCACACGCA GG chr19:28427436-28427936 + 1 6.29e-07 . cacacccattctccaacatgca gagccacaca chr19:17246141-17246641 + 79 6.29e-07 ACACGCGCGC GCGAGACAGACAGacacacaca chr14:19374373-19374873 - 62 9.55e-07 GACATCACCA CATGGACACACTGTCACACTAC CACAGGGACA chr1:27528322-27528822 - 14 1.43e-06 CTCGTACAGA CACAGATACAGAGGCACAGGTA CGCTCGGTTA chr1:94022047-94022547 - 32 1.54e-06 AGCTAGCAGC CATGCAAAGGCAGAGACATGCA GGCAGTCTGG chr10:46525211-46525711 + 7 2.27e-06 ataact cacaccctctatactacacata ccccacacac chr7:150003326-150003826 - 51 2.27e-06 GATAACATAC CACACACTACATACCACATGTA CCACACACAA chr1:228867808-228868308 - 34 3.79e-06 CCACAGAAAT CACAGCGAGCCTATCACATAAA CACAGCATGG chr5:171493868-171494368 + 2 4.07e-06 a cacaacacaacacacacacgcc agggagcaca chr16:85245683-85246183 - 74 4.07e-06 ACCCA GACAGCCCCCCACACACACACG CCCTGCTCCC chr3:14403086-14403586 - 34 5.02e-06 CACAAACGGG GACACACAAGAGCACACATCCA AAGACAGCAC chr17:8118298-8118798 + 58 8.05e-06 TCATAAATCA CACGTGACTGCAGCCACACGCA GGTGAGTCGC chrUn_KI270467v1:3138-36 + 62 9.78e-06 tttgatattt tatggacagtatataatacaca gtttgggtac chr12:111599637-11160013 - 73 1.26e-05 GTGCTT TACACGTAGCAAGACACATTCT CCGCCCCAAG chrUn_KI270467v1:2090-25 + 65 1.34e-05 tttgatatat tatgtacagtatataatataca gtttgggtac chr16:2027327-2027827 - 63 1.42e-05 GCTGACCCCA AAGGGACCTGCATACACACGCC CAGCTGTGTT chr4:49709150-49709650 - 29 2.29e-05 TTTGATATTT TATGTACAGTATATAATACATA CTTTGGGTAC chrUn_KI270467v1:2926-34 + 23 3.39e-05 tttgatattt tatgtacagtatgtaatatata ttttgagtat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:37701159-37701659 8.1e-14 50_[-2]_28 chr7:100478129-100478629 8.1e-14 44_[-2]_34 chr6:166008638-166009138 1.8e-12 77_[-2]_1 chr12:580706-581206 4.4e-12 18_[-2]_60 chr8:37513911-37514411 1e-11 59_[+2]_19 chr10:122703391-12270389 2.2e-11 17_[+2]_61 chr15:66932591-66933091 4.5e-11 49_[+2]_29 chr1:10793941-10794441 6.4e-11 8_[-2]_70 chr17:15465225-15465725 7.6e-11 64_[+2]_14 chr18:63198247-63198747 1.2e-10 41_[+2]_37 chr19:33273953-33274453 1.7e-10 73_[-2]_5 chr8:37785267-37785767 3.7e-10 58_[+2]_20 chr7:100650171-100650671 3.7e-10 3_[+2]_75 chr7:104932901-104933401 5e-10 73_[+2]_5 chr19:33249636-33250136 5e-10 12_[+2]_66 chr17:82281389-82281889 5.8e-10 64_[-2]_14 chr8:142816933-142817433 7.8e-10 32_[+2]_46 chrX:118218024-118218524 8.9e-10 17_[-2]_61 chr12:5796193-5796693 1.2e-09 71_[+2]_7 chr2:234969697-234970197 1.4e-09 22_[+2]_56 chr16:57628626-57629126 3e-09 20_[-2]_58 chr19:38111784-38112284 3.9e-09 68_[+2]_10 chr15:70530162-70530662 6.4e-09 26_[+2]_52 chr12:6778630-6779130 8.1e-09 52_[+2]_26 chr2:172098537-172099037 1e-08 63_[-2]_15 chr16:85522838-85523338 1.2e-08 62_[-2]_16 chr17:44590595-44591095 1.8e-08 34_[-2]_44 chr16:75233826-75234326 2.1e-08 47_[+2]_31 chr6:150016345-150016845 2.6e-08 2_[+2]_76 chr18:49019533-49020033 4e-08 78_[-2] chr19:12984352-12984852 4e-08 51_[-2]_27 chr8:28254105-28254605 4.4e-08 41_[+2]_37 chr19:30375663-30376163 4.9e-08 59_[-2]_19 chr16:11171687-11172187 5.4e-08 67_[+2]_11 chr1:21651290-21651790 6e-08 51_[+2]_27 chr19:36528838-36529338 6e-08 66_[-2]_12 chr19:2524521-2525021 7.4e-08 73_[-2]_5 chr19:39157985-39158485 7.4e-08 8_[-2]_70 chr19:36214000-36214500 1.5e-07 1_[+2]_77 chr5:10548560-10549060 1.6e-07 58_[-2]_20 chr1:47591840-47592340 1.8e-07 76_[-2]_2 chr9:129607281-129607781 2.6e-07 23_[-2]_55 chr8:28401254-28401754 2.8e-07 41_[-2]_37 chr19:36488778-36489278 4.5e-07 78_[+2] chr19:33778321-33778821 4.5e-07 43_[+2]_35 chr1:3321686-3322186 5.3e-07 64_[-2]_14 chr14:102776614-10277711 5.8e-07 2_[-2]_76 chr19:28427436-28427936 6.3e-07 [+2]_78 chr19:17246141-17246641 6.3e-07 78_[+2] chr14:19374373-19374873 9.6e-07 61_[-2]_17 chr1:27528322-27528822 1.4e-06 13_[-2]_65 chr1:94022047-94022547 1.5e-06 31_[-2]_47 chr10:46525211-46525711 2.3e-06 6_[+2]_72 chr7:150003326-150003826 2.3e-06 50_[-2]_28 chr1:228867808-228868308 3.8e-06 33_[-2]_45 chr5:171493868-171494368 4.1e-06 1_[+2]_77 chr16:85245683-85246183 4.1e-06 73_[-2]_5 chr3:14403086-14403586 5e-06 33_[-2]_45 chr17:8118298-8118798 8e-06 57_[+2]_21 chrUn_KI270467v1:3138-36 9.8e-06 61_[+2]_17 chr12:111599637-11160013 1.3e-05 72_[-2]_6 chrUn_KI270467v1:2090-25 1.3e-05 64_[+2]_14 chr16:2027327-2027827 1.4e-05 62_[-2]_16 chr4:49709150-49709650 2.3e-05 28_[-2]_50 chrUn_KI270467v1:2926-34 3.4e-05 22_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACASACACACANRCACACRCA width=22 seqs=65 chr8:37701159-37701659 ( 51) CACACACACACAAACACACACA 1 chr7:100478129-100478629 ( 45) CACACACACACACACACACACA 1 chr6:166008638-166009138 ( 78) CACATACACACATGCACACACA 1 chr12:580706-581206 ( 19) CACAGACACACAGGCACACACA 1 chr8:37513911-37514411 ( 60) CACAGATACACAGACACACACA 1 chr10:122703391-12270389 ( 18) CATACATACACATACACATACA 1 chr15:66932591-66933091 ( 50) CACACACATGCATTCACACACA 1 chr1:10793941-10794441 ( 9) CACATACAAACACGCACACACA 1 chr17:15465225-15465725 ( 65) CATACAAACACAGACACACACA 1 chr18:63198247-63198747 ( 42) CACAGACACACATTGACACACA 1 chr19:33273953-33274453 ( 74) CACACCCACACAGACACACGCA 1 chr8:37785267-37785767 ( 59) TACACACACATATGCACATACA 1 chr7:100650171-100650671 ( 4) CACACATAAACACACACATGCA 1 chr7:104932901-104933401 ( 74) CACACATATACACATACACGCA 1 chr19:33249636-33250136 ( 13) CACAGACACACAGATACACACC 1 chr17:82281389-82281889 ( 65) CACAGGCACACATGCACACATA 1 chr8:142816933-142817433 ( 33) CACATGCACACATGTACACACA 1 chrX:118218024-118218524 ( 18) CACATACATGCACACATACACA 1 chr12:5796193-5796693 ( 72) CACATACACACACACAAACTCA 1 chr2:234969697-234970197 ( 23) CACACACACATTTGCATACACA 1 chr16:57628626-57629126 ( 21) CACACTCACACTCTCACACTCA 1 chr19:38111784-38112284 ( 69) CACACACACGTATGCACACACC 1 chr15:70530162-70530662 ( 27) CACAGACACACAGATACACAAC 1 chr12:6778630-6779130 ( 53) CACACACATGCACACACACGCG 1 chr2:172098537-172099037 ( 64) CACACTCTCACAGTCACACTCA 1 chr16:85522838-85523338 ( 63) CACACAACCACAACCACACGCA 1 chr17:44590595-44591095 ( 35) AATACACACACATGCACACACT 1 chr16:75233826-75234326 ( 48) CACACACACACTAGCACACGTG 1 chr6:150016345-150016845 ( 3) CAGACACAGCCATGCACATACA 1 chr18:49019533-49020033 ( 79) CACATGCTCATTCACACACGCA 1 chr19:12984352-12984852 ( 52) CACAAACTCACAATCACACCCA 1 chr8:28254105-28254605 ( 42) AACATGCATGCATGCACACACA 1 chr19:30375663-30376163 ( 60) CACAGGCACATGAGCACACACA 1 chr16:11171687-11172187 ( 68) CATAGTCACACTCCCACACATA 1 chr1:21651290-21651790 ( 52) CACACATGCACATGGACACGCA 1 chr19:36528838-36529338 ( 67) CACAGAGTTACAATCACACACC 1 chr19:2524521-2525021 ( 74) CACACACCCATAGTGACATGCA 1 chr19:39157985-39158485 ( 9) CCCACACATGCACATACATGCA 1 chr19:36214000-36214500 ( 2) CACACAGTCACAGGCACAGGCA 1 chr5:10548560-10549060 ( 59) GACACACATGCTAACACATGCC 1 chr1:47591840-47592340 ( 77) CACAGACCCACACGCACATTAC 1 chr9:129607281-129607781 ( 24) CCAAGATAGACACACACACACA 1 chr8:28401254-28401754 ( 42) CACACGTGCGCATACACACGTA 1 chr19:36488778-36489278 ( 79) CACAGTCACGATCACACATTAA 1 chr19:33778321-33778821 ( 44) CACACGCGCAAACACAAATGCA 1 chr1:3321686-3322186 ( 65) TATACAGTCTCATGTACATACA 1 chr14:102776614-10277711 ( 3) CACGCACCCTCGCGCACACGCA 1 chr19:28427436-28427936 ( 1) CACACCCATTCTCCAACATGCA 1 chr19:17246141-17246641 ( 79) GCGAGACAGACAGACACACACA 1 chr14:19374373-19374873 ( 62) CATGGACACACTGTCACACTAC 1 chr1:27528322-27528822 ( 14) CACAGATACAGAGGCACAGGTA 1 chr1:94022047-94022547 ( 32) CATGCAAAGGCAGAGACATGCA 1 chr10:46525211-46525711 ( 7) CACACCCTCTATACTACACATA 1 chr7:150003326-150003826 ( 51) CACACACTACATACCACATGTA 1 chr1:228867808-228868308 ( 34) CACAGCGAGCCTATCACATAAA 1 chr5:171493868-171494368 ( 2) CACAACACAACACACACACGCC 1 chr16:85245683-85246183 ( 74) GACAGCCCCCCACACACACACG 1 chr3:14403086-14403586 ( 34) GACACACAAGAGCACACATCCA 1 chr17:8118298-8118798 ( 58) CACGTGACTGCAGCCACACGCA 1 chrUn_KI270467v1:3138-36 ( 62) TATGGACAGTATATAATACACA 1 chr12:111599637-11160013 ( 73) TACACGTAGCAAGACACATTCT 1 chrUn_KI270467v1:2090-25 ( 65) TATGTACAGTATATAATATACA 1 chr16:2027327-2027827 ( 63) AAGGGACCTGCATACACACGCC 1 chr4:49709150-49709650 ( 29) TATGTACAGTATATAATACATA 1 chrUn_KI270467v1:2926-34 ( 23) TATGTACAGTATGTAATATATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.2609 E= 9.9e-124 -210 138 -230 -88 227 -271 -1267 -1267 -368 135 -271 -22 212 -1267 -113 -1267 -268 75 -5 -22 184 -171 -113 -168 -136 126 -230 -51 184 -130 -271 -68 -136 99 -97 -22 160 -197 -60 -68 -36 129 -429 -110 184 -1267 -271 32 2 3 -30 32 107 -171 -5 2 -136 132 -230 -88 234 -1267 -1267 -1267 -268 154 -1267 -110 234 -1267 -1267 -1267 -1267 116 -329 56 140 -329 16 -88 -136 138 -1267 -51 199 -113 -271 -268 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 65 E= 9.9e-124 0.046154 0.784615 0.061538 0.107692 0.953846 0.046154 0.000000 0.000000 0.015385 0.769231 0.046154 0.169231 0.861538 0.000000 0.138462 0.000000 0.030769 0.507692 0.292308 0.169231 0.707692 0.092308 0.138462 0.061538 0.076923 0.723077 0.061538 0.138462 0.707692 0.123077 0.046154 0.123077 0.076923 0.600000 0.153846 0.169231 0.600000 0.076923 0.200000 0.123077 0.153846 0.738462 0.015385 0.092308 0.707692 0.000000 0.046154 0.246154 0.200000 0.307692 0.246154 0.246154 0.415385 0.092308 0.292308 0.200000 0.076923 0.753846 0.061538 0.107692 1.000000 0.000000 0.000000 0.000000 0.030769 0.876923 0.000000 0.092308 1.000000 0.000000 0.000000 0.000000 0.000000 0.676923 0.030769 0.292308 0.523077 0.030769 0.338462 0.107692 0.076923 0.784615 0.000000 0.138462 0.784615 0.138462 0.046154 0.030769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 regular expression -------------------------------------------------------------------------------- CACA[CG]ACAC[AG]C[AT][CGTA][AGT]CACA[CT][AG]CA -------------------------------------------------------------------------------- Time 796.84 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 width = 43 sites = 17 llr = 668 E-value = 1.1e-134 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 42:5:16::1:14::6::1:16:15:16:12::1:24::41:2 pos.-specific C 1::::11::11::::1::1::1::2::1::1::11:2::1:11 probability G 5:951812a8:95:a4:98:93:92191:97:a8184295186 matrix T :8119118:19:1a::a1:a::a:1911a:1a:19::81:91: bits 2.3 * * * * * * 2.1 * * * * * * 1.9 * * * * * * * 1.6 * * ** * ** * * * * * ** * * Relative 1.4 ** * ** * ** ** ** ** * ** ** * ** * Entropy 1.2 ** * ** ** ** ** ** ** ** ** ** ** ** * (56.7 bits) 0.9 ** * ***** *********** ** ** ** ** ** ** 0.7 *********************** *********** ** *** 0.5 ************************ ****************** 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GTGATGATGGTGGTGATGGTGATGATGATGGTGGTGATGGTGG consensus A G A G G C AGG A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr16:89068627-89069127 + 55 1.44e-25 gatggtggtg atgatgatggtggtgatggtgatgatgatggtggtgatggtga tga chr16:86588029-86588529 - 4 1.07e-22 GATGGTGATG GTGGTGAGGGTGATGATGGTGATGATGATGATGGTGATGATGA TGG chr16:85823166-85823666 - 1 1.67e-22 GATGTTGATG GTGATGATGATGTTGATGGTGATGATGATGATGGTGATGATGG chr19:30435112-30435612 + 14 2.58e-22 gatggtggtg atgatgatggtgatggtggtgatgctgatgctggtgatggtgg tgatgatgat chr17:81531588-81532088 + 7 5.96e-22 gtgatg atgataatggtgatgatggtggtggtgatggtggtggtggtga tggtggtgat chr17:81253420-81253920 - 11 1.51e-21 GGTAGGGATG GAGATGATGGTGATGATGGTGATGTTGATGGTGGTAGGGATGG AGATGATGGT chr5:176591612-176592112 + 42 5.94e-21 tgttggtgtt gaggtgatggtgatggttgtgatggtgatggtggtgatgatgg tgttggtgtt chr12:131540125-13154062 + 4 1.52e-20 gcg atgatgatggtagtgatggtgatgatggtaatggtggtggtgg tggtgatgtt chr22:39565423-39565923 + 7 2.38e-20 atgatg atggtgttggtggtggtggtgatgatgttggtgttagtgatgg cgatggtggt chr19:30338103-30338603 + 47 4.13e-20 agtaatgatg gtggtgatggcgatgatggtgataataatggtggtgatgatgg tggtgatgat chr12:115177837-11517833 - 4 3.21e-19 CGTGATGATG ATGGTTATGGTGGTGATGATGATGGTTATGGTGGTAATGATGC TGA chr4:1514078-1514578 + 42 6.25e-19 gacgttggta atgatggtggtagtgatggtagtgatgatggtgatggtggttg atggtgatgg chr18:57436019-57436519 - 7 2.63e-18 ACAGGCGCTG GTGGTGGTGGTGGTGGTGGTGGTGCGGATGGTGGTGCGGGTGA GGGTGG chr14:100239204-10023970 - 47 1.71e-16 GCAGAGCGAT CATGGGCGGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGG CCGGCGTGCC chr6:156777902-156778402 - 58 1.67e-14 . GTGGGCATGGTGGTGGTGGTGGTGCTGCTGGTGGGGCGGCGCG GCGGGGGCTT chr17:81424567-81425067 + 45 1.65e-13 ATAGTGCTGG GTGATATGGTTGGTGATGATGATGTGGTTGGTGACAGGTGATG TGGTTGGTGG chr16:67842641-67843141 - 22 2.78e-13 GCTGCTGCTG CTGTTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGC CTGCGGCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89068627-89069127 1.4e-25 54_[+3]_3 chr16:86588029-86588529 1.1e-22 3_[-3]_54 chr16:85823166-85823666 1.7e-22 [-3]_57 chr19:30435112-30435612 2.6e-22 13_[+3]_44 chr17:81531588-81532088 6e-22 6_[+3]_51 chr17:81253420-81253920 1.5e-21 10_[-3]_47 chr5:176591612-176592112 5.9e-21 41_[+3]_16 chr12:131540125-13154062 1.5e-20 3_[+3]_54 chr22:39565423-39565923 2.4e-20 6_[+3]_51 chr19:30338103-30338603 4.1e-20 46_[+3]_11 chr12:115177837-11517833 3.2e-19 3_[-3]_54 chr4:1514078-1514578 6.2e-19 41_[+3]_16 chr18:57436019-57436519 2.6e-18 6_[-3]_51 chr14:100239204-10023970 1.7e-16 46_[-3]_11 chr6:156777902-156778402 1.7e-14 57_[-3] chr17:81424567-81425067 1.7e-13 44_[+3]_13 chr16:67842641-67843141 2.8e-13 21_[-3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG width=43 seqs=17 chr16:89068627-89069127 ( 55) ATGATGATGGTGGTGATGGTGATGATGATGGTGGTGATGGTGA 1 chr16:86588029-86588529 ( 4) GTGGTGAGGGTGATGATGGTGATGATGATGATGGTGATGATGA 1 chr16:85823166-85823666 ( 1) GTGATGATGATGTTGATGGTGATGATGATGATGGTGATGATGG 1 chr19:30435112-30435612 ( 14) ATGATGATGGTGATGGTGGTGATGCTGATGCTGGTGATGGTGG 1 chr17:81531588-81532088 ( 7) ATGATAATGGTGATGATGGTGGTGGTGATGGTGGTGGTGGTGA 1 chr17:81253420-81253920 ( 11) GAGATGATGGTGATGATGGTGATGTTGATGGTGGTAGGGATGG 1 chr5:176591612-176592112 ( 42) GAGGTGATGGTGATGGTTGTGATGGTGATGGTGGTGATGATGG 1 chr12:131540125-13154062 ( 4) ATGATGATGGTAGTGATGGTGATGATGGTAATGGTGGTGGTGG 1 chr22:39565423-39565923 ( 7) ATGGTGTTGGTGGTGGTGGTGATGATGTTGGTGTTAGTGATGG 1 chr19:30338103-30338603 ( 47) GTGGTGATGGCGATGATGGTGATAATAATGGTGGTGATGATGG 1 chr12:115177837-11517833 ( 4) ATGGTTATGGTGGTGATGATGATGGTTATGGTGGTAATGATGC 1 chr4:1514078-1514578 ( 42) ATGATGGTGGTAGTGATGGTAGTGATGATGGTGATGGTGGTTG 1 chr18:57436019-57436519 ( 7) GTGGTGGTGGTGGTGGTGGTGGTGCGGATGGTGGTGCGGGTGA 1 chr14:100239204-10023970 ( 47) CATGGGCGGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGG 1 chr6:156777902-156778402 ( 58) GTGGGCATGGTGGTGGTGGTGGTGCTGCTGGTGGGGCGGCGCG 1 chr17:81424567-81425067 ( 45) GTGATATGGTTGGTGATGATGATGTGGTTGGTGACAGGTGATG 1 chr16:67842641-67843141 ( 22) CTGTTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 12.3641 E= 1.1e-134 106 -136 64 -1073 -16 -1073 -1073 206 -1073 -1073 164 -175 125 -1073 64 -175 -1073 -1073 -136 216 -75 -236 134 -175 171 -136 -136 -75 -1073 -1073 -78 206 -1073 -1073 173 -1073 -175 -236 145 -175 -1073 -236 -1073 225 -75 -1073 154 -1073 84 -1073 81 -75 -1073 -1073 -1073 234 -1073 -1073 173 -1073 157 -236 22 -1073 -1073 -1073 -1073 234 -1073 -1073 164 -175 -75 -236 145 -1073 -1073 -1073 -1073 234 -175 -1073 164 -1073 171 -236 -4 -1073 -1073 -1073 -1073 234 -175 -1073 164 -1073 125 -36 -78 -75 -1073 -1073 -136 216 -175 -1073 154 -175 171 -136 -136 -75 -1073 -1073 -1073 234 -175 -1073 164 -1073 -16 -236 122 -175 -1073 -1073 -1073 234 -1073 -1073 173 -1073 -75 -236 134 -175 -1073 -236 -236 216 25 -1073 134 -1073 106 -78 45 -1073 -1073 -1073 -36 195 -1073 -1073 164 -175 106 -136 64 -1073 -175 -1073 -236 216 -1073 -236 145 -75 25 -136 110 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 17 E= 1.1e-134 0.411765 0.117647 0.470588 0.000000 0.176471 0.000000 0.000000 0.823529 0.000000 0.000000 0.941176 0.058824 0.470588 0.000000 0.470588 0.058824 0.000000 0.000000 0.117647 0.882353 0.117647 0.058824 0.764706 0.058824 0.647059 0.117647 0.117647 0.117647 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 1.000000 0.000000 0.058824 0.058824 0.823529 0.058824 0.000000 0.058824 0.000000 0.941176 0.117647 0.000000 0.882353 0.000000 0.352941 0.000000 0.529412 0.117647 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.588235 0.058824 0.352941 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.941176 0.058824 0.117647 0.058824 0.823529 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.941176 0.000000 0.647059 0.058824 0.294118 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.941176 0.000000 0.470588 0.235294 0.176471 0.117647 0.000000 0.000000 0.117647 0.882353 0.058824 0.000000 0.882353 0.058824 0.647059 0.117647 0.117647 0.117647 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.941176 0.000000 0.176471 0.058824 0.705882 0.058824 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.058824 0.764706 0.058824 0.000000 0.058824 0.058824 0.882353 0.235294 0.000000 0.764706 0.000000 0.411765 0.176471 0.411765 0.000000 0.000000 0.000000 0.235294 0.764706 0.000000 0.000000 0.941176 0.058824 0.411765 0.117647 0.470588 0.000000 0.058824 0.000000 0.058824 0.882353 0.000000 0.058824 0.823529 0.117647 0.235294 0.117647 0.647059 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 regular expression -------------------------------------------------------------------------------- [GA]TG[AG]TGATGGTG[GA]TG[AG]TGGTG[AG]TG[AC]TGATGGTGGT[GA][AG][TG]G[GA]TG[GA] -------------------------------------------------------------------------------- Time 1136.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 width = 41 sites = 10 llr = 429 E-value = 4.8e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:::6:1:::::aa::::a::63::111:a1::::a:2:8: pos.-specific C :a:6:6:aa:::::2aa9::a17411::::::a4::1:9:: probability G 9:414:9:::a::::::::a::::1299a:8a:29:98:2a matrix T ::63:4:::a:a::8::1:::3:686::::1::41:::1:: bits 2.3 * *** * * * 2.1 * *** * * * 1.9 * *** * * * 1.6 * ******* ** *** ** ** * * Relative 1.4 ** *************** * **** ** ** *** Entropy 1.2 *** * *************** ** **** ** ******* (61.9 bits) 0.9 *** ********************* ******* ******* 0.7 ************************* ******* ******* 0.5 ***************************************** 0.2 ***************************************** 0.0 ----------------------------------------- Multilevel GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAG consensus GTGT C TAC G T A G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------- chr12:8237627-8238127 + 51 3.55e-24 aggtgcagtg gctcatgcctgtaatcccagcactttgggaggccgaggcag gcggatcac chr19:38234162-38234662 + 13 5.41e-22 cagtgcggtg gctcacgcctgtaaccccagcactttgggaggcggaggcag gcggatcacc chr19:34133679-34134179 + 19 2.31e-21 gggagtggtg gcgtgcgcctgtaatcccagctacttgggaggctgaggcag gagaatcgct chr19:44215507-44216007 + 13 1.80e-20 aggtgcggtg gctcatgcctgtaatcccagcacttggggaggcctaggcgg gtggatcacc chr17:2282691-2283191 + 12 3.88e-20 tggtgtggtg gctcacgcctgtaatcccagcacttagagatgcggaggcag gcggatcact chr6:1810301-1810801 - 27 4.79e-20 AGGTGTGGTG GCTCACGCCTGTAACCCTAGCACTCTGGGAGGCCGAGGCAG GTGGATCACC chr16:30558751-30559251 + 27 9.52e-20 aggtgtggtg gcgtgcacctgtaatcccagctactggggaggctgaggcag gagtatcgct chr12:2812926-2813426 - 21 2.47e-19 GGGCGTGGTG GCGGGCGCCTGTAATCCCAGCCCCTTGGGAGGCTGAGGTAG GAGAATCGCT chr17:47280346-47280846 - 56 6.57e-19 GATG ACTCATGCCTGTAATCCCAGCACTGTGGGAGGCCGACACGG GTGGATAACT chr5:43064241-43064741 + 40 1.17e-18 ggcagtggtg gcgtgtgcctgtaatcccagctactcaggaagctgagacag gagaatcgct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:8237627-8238127 3.5e-24 50_[+4]_9 chr19:38234162-38234662 5.4e-22 12_[+4]_47 chr19:34133679-34134179 2.3e-21 18_[+4]_41 chr19:44215507-44216007 1.8e-20 12_[+4]_47 chr17:2282691-2283191 3.9e-20 11_[+4]_48 chr6:1810301-1810801 4.8e-20 26_[-4]_33 chr16:30558751-30559251 9.5e-20 26_[+4]_33 chr12:2812926-2813426 2.5e-19 20_[-4]_39 chr17:47280346-47280846 6.6e-19 55_[-4]_4 chr5:43064241-43064741 1.2e-18 39_[+4]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG width=41 seqs=10 chr12:8237627-8238127 ( 51) GCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAG 1 chr19:38234162-38234662 ( 13) GCTCACGCCTGTAACCCCAGCACTTTGGGAGGCGGAGGCAG 1 chr19:34133679-34134179 ( 19) GCGTGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAG 1 chr19:44215507-44216007 ( 13) GCTCATGCCTGTAATCCCAGCACTTGGGGAGGCCTAGGCGG 1 chr17:2282691-2283191 ( 12) GCTCACGCCTGTAATCCCAGCACTTAGAGATGCGGAGGCAG 1 chr6:1810301-1810801 ( 27) GCTCACGCCTGTAACCCTAGCACTCTGGGAGGCCGAGGCAG 1 chr16:30558751-30559251 ( 27) GCGTGCACCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAG 1 chr12:2812926-2813426 ( 21) GCGGGCGCCTGTAATCCCAGCCCCTTGGGAGGCTGAGGTAG 1 chr17:47280346-47280846 ( 56) ACTCATGCCTGTAATCCCAGCACTGTGGGAGGCCGACACGG 1 chr5:43064241-43064741 ( 40) GCGTGTGCCTGTAATCCCAGCTACTCAGGAAGCTGAGACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 36000 bayes= 12.065 E= 4.8e-069 -98 -997 157 -997 -997 172 -997 -997 -997 -997 40 160 -997 99 -159 60 160 -997 40 -997 -997 99 -997 102 -98 -997 157 -997 -997 172 -997 -997 -997 172 -997 -997 -997 -997 -997 234 -997 -997 172 -997 -997 -997 -997 234 234 -997 -997 -997 234 -997 -997 -997 -997 -60 -997 202 -997 172 -997 -997 -997 172 -997 -997 -997 157 -997 -98 234 -997 -997 -997 -997 -997 172 -997 -997 172 -997 -997 160 -159 -997 60 60 121 -997 -997 -997 40 -997 160 -997 -159 -159 202 -98 -159 -60 160 -98 -997 157 -997 -98 -997 157 -997 -997 -997 172 -997 234 -997 -997 -997 -98 -997 140 -98 -997 -997 172 -997 -997 172 -997 -997 -997 40 -60 102 -997 -997 157 -98 234 -997 -997 -997 -997 -159 157 -997 2 -997 140 -997 -997 157 -997 -98 202 -997 -60 -997 -997 -997 172 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 10 E= 4.8e-069 0.100000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.600000 0.100000 0.300000 0.600000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.400000 0.100000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.100000 0.000000 0.300000 0.300000 0.700000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.100000 0.100000 0.800000 0.100000 0.100000 0.200000 0.600000 0.100000 0.000000 0.900000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.800000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.200000 0.400000 0.000000 0.000000 0.900000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.900000 0.000000 0.100000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYRYGCCTGTAATCCCAGCWCYTTGGGAGGCBGAGGCAG MEME-4 regular expression -------------------------------------------------------------------------------- GC[TG][CT][AG][CT]GCCTGTAA[TC]CCCAGC[AT][CA][TC]T[TG]GGGAGGC[CTG]GAG[GA]C[AG]G -------------------------------------------------------------------------------- Time 1469.41 secs. ******************************************************************************** ******************************************************************************** MOTIF TGDTGTKTGTGGTGWKKGTGDT MEME-5 width = 22 sites = 52 llr = 708 E-value = 7.6e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 113:13112:221:3:22:221 pos.-specific C ::1::::::::111:11:1:1: probability G 162272538:75171438:842 matrix T 83482547:a1282645:9:37 bits 2.3 2.1 * 1.9 * 1.6 * * Relative 1.4 * * * Entropy 1.2 * * ** *** (19.6 bits) 0.9 * ** **** * * *** * 0.7 ** *** **** *** *** * 0.5 *********** ******** * 0.2 ********************** 0.0 ---------------------- Multilevel TGTTGTGTGTGGTGTGTGTGGT consensus TAGTATGA A ATGA ATG sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr18:49019533-49020033 + 20 1.09e-12 cgagcatgtg tgatgtgtgtggtgtgtgtggt atgtgagtgt chr2:241864216-241864716 + 58 4.63e-10 gtgtgctgtg tgtggtgtgtggtgtgtgtgta gtgtatgtgg chrX:153382858-153383358 - 19 6.56e-10 TGTTCAAGTG AGGTGTGTGTGGTGTGTGTGTT CATGCAGGGA chr17:81253420-81253920 - 61 7.74e-10 ATGGTGATGG TGATGATGGTGATGTTGGTGGT AGGGATGGAG chr22:39565423-39565923 + 59 9.13e-10 gcgatggtgg tgatgatgatggtgttggtggt ggtggtgatg chr12:115177837-11517833 - 72 1.08e-09 CTGATGG TGATGATGGTGGTGATAGTGAT GGTGAGGATG chr16:86224535-86225035 + 4 1.48e-09 tag tgatggtgatggtgttggtgtt gctgttgttt chr1:47591840-47592340 + 12 2.01e-09 cataactgtg ttgtgtgtgtagtgtgtgtgag tctgaggtga chr16:86588029-86588529 - 54 2.35e-09 GTGAAGATGA TGATGATGGTGGTGATGATGAT GGTGATGGTG chr16:85823166-85823666 - 51 2.73e-09 GTGATGTTGA TGATGAGGATGGTGATGGTGAT GTTGATGGTG chr5:176591612-176592112 + 14 3.16e-09 gttgtgatgg tgatggtggtgatgatggtgtt ggtgttgagg chr7:150003326-150003826 + 5 3.66e-09 ggta tgtggtatgtgctgtgtgtggt atgtaggatg chr16:89068627-89069127 + 29 5.60e-09 atgatgacga tgatgatggtgatgatgatggt ggtgatgatg chr17:81424567-81425067 + 21 7.39e-09 TGGTGGGTGA TGTGGTTTGTGGTGATAGTGCT GGGTGATATG chr12:130764505-13076500 + 24 1.11e-08 TGTCGTGATG TTATTGATGTGGTGTTGATGAT GTCACAGTGT chr19:30435112-30435612 + 77 2.10e-08 gatgatggtg tgatgatgatgctgttgatggt ga chr1:223558454-223558954 + 71 2.10e-08 gtgtgtactg tatgatgtgtgatgtgtgtggt gtgcacat chr16:85522838-85523338 + 36 2.10e-08 catgtgactg tgttgtgtgtggcctgtgtgtg ttgtgtgcgt chr17:81531588-81532088 + 50 2.10e-08 gtggtggtga tggtggtgatggtgatggtggt gatggcgatg chr12:131540125-13154062 + 53 6.85e-08 gtggtggtga tgttggtgatggtgatcatgat agtgaggatg chr1:228781979-228782479 + 70 9.54e-08 tgtgtagtct gtgtgtatgtggtctgtgtggt ccgtgtata chr12:2812926-2813426 + 75 9.54e-08 cacgcccgac taatttttgtgtttttagtaga ggtg chr19:30338103-30338603 + 12 1.06e-07 aatgataata tgatgatgatgatgacaatgtt gatagtaatg chr1:228782288-228782788 + 20 1.18e-07 tgtgtgtagt gtgtgtgtgtggtctgtgtgta tggtccgggt chr17:44590595-44591095 + 75 1.18e-07 tgtgcatgtg tgtgtattgtgtctagtgtgtt catg chr1:235505702-235506202 - 25 1.99e-07 TACGCCAGAC TAATTTTTGTATTTTTAGTAGA GACAGGGTTT chr4:189234913-189235413 + 22 2.44e-07 TCTGTGGTGG TGTTTGGTGTAGTTGTAGTAGT GCTCTGTGGT chr4:189233708-189234208 + 3 2.44e-07 GG TGTTTGGTGTAGTTGTAGTAGT GCTCTGTGGT chr5:171493868-171494368 - 28 2.69e-07 GCTCACAAGC ATGTGTGTGTTGTGTGTGTGCT CCCTGGCGTG chr4:1514078-1514578 + 1 3.61e-07 . tgatggtgatagtgacaatgat gatggaggtg chr19:40284444-40284944 - 2 3.97e-07 AACCCAAATC AGAGGACTGTGATGTTTGTGAT C chr16:86932262-86932762 + 10 4.36e-07 gagtgtgag gtttgagtgtgaggtgtgtgaa tgtgaagtgt chr5:856472-856972 - 79 4.79e-07 . TGTGGTGTGTATTCTGTGTGCG TGATGTGTAT chr5:43064241-43064741 - 5 5.77e-07 CACTGCCACC TAATTTTTGTATTTTTCGTAGA GACA chr10:46525211-46525711 - 74 6.92e-07 GTGTG TGATGTGTGTGTGTGGGGTGTA TGTATTGTGT chr17:6069531-6070031 + 72 7.57e-07 gtgtgtgtgc gtgcgtgtgtggtgtgtgtgtg tATTAGA chr19:33249636-33250136 - 72 8.27e-07 TCTGTGT GTCTGTGTGTGGTGTGTGCGTG TGGTGTGTAT chr15:70097501-70098001 - 56 8.27e-07 TGTGTGTGTT GGGTGTGTGTGTTTTGGGGGTT TGCCGGGGCG chr1:228867808-228868308 + 66 9.03e-07 ATTTCTGTGG TGTGGAGAGTGGTGAGCGTGGG GTCGGATATT chr1:241640627-241641127 - 2 1.27e-06 TTTTCTTTGC TTTTGTTTACATTGAGTGTATG A chr12:57111934-57112434 - 72 1.64e-06 GTGTGTG TGTGTGGTGTTGTGATTGCAAT GGGCTCTGTT chr16:86932041-86932541 + 72 2.09e-06 tgtgagcata atgggtgtgtgaggtgtgtggg ttggagt chr5:1929088-1929588 + 51 2.26e-06 gtgtggtgtg tgttgtgtgtgtctggcatgtg tatgtgttgt chr19:6229582-6230082 - 72 2.26e-06 CGTGTTG TGTGTCGTGTGCGGTGTGTGGT GTGTCATGTG chr16:2182127-2182627 - 73 3.33e-06 TGGCAC GTGTGTGTGTTGTGGCTGTGTG GCATGTGTGT chr19:44261730-44262230 + 34 3.87e-06 ATGATTTCAC TTTTAAGGATGACCTTGATGTT GCTTGAGCAA chr1:26788218-26788718 - 78 5.99e-06 T TGCTAGGTATGCTTAGGGTAGT TGGGCCCTAT chrUn_KI270467v1:3138-36 + 15 6.89e-06 gctactttga tattttatgtacagtttacaat atatattttg chr8:142816933-142817433 - 10 7.38e-06 GTGCATGTGC TTGTGTAAGTAACGTCTATGTG TGTGAATGT chr4:49709150-49709650 - 76 8.46e-06 TGA TATTTTATGTACAGTATATAAT ACATACTTTG chrX:135051119-135051619 + 16 1.52e-05 GTTGGTGAGA TGCGGTGGATGGCGATGGCAGT GGTAGCGTAG chr5:139274479-139274979 - 79 2.32e-05 . TATTTTTAGTAGAGACGGGGTT TCACCATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:49019533-49020033 1.1e-12 19_[+5]_59 chr2:241864216-241864716 4.6e-10 57_[+5]_21 chrX:153382858-153383358 6.6e-10 18_[-5]_60 chr17:81253420-81253920 7.7e-10 60_[-5]_18 chr22:39565423-39565923 9.1e-10 58_[+5]_20 chr12:115177837-11517833 1.1e-09 71_[-5]_7 chr16:86224535-86225035 1.5e-09 3_[+5]_75 chr1:47591840-47592340 2e-09 11_[+5]_67 chr16:86588029-86588529 2.3e-09 53_[-5]_25 chr16:85823166-85823666 2.7e-09 50_[-5]_28 chr5:176591612-176592112 3.2e-09 13_[+5]_65 chr7:150003326-150003826 3.7e-09 4_[+5]_74 chr16:89068627-89069127 5.6e-09 28_[+5]_50 chr17:81424567-81425067 7.4e-09 20_[+5]_58 chr12:130764505-13076500 1.1e-08 23_[+5]_55 chr19:30435112-30435612 2.1e-08 76_[+5]_2 chr1:223558454-223558954 2.1e-08 70_[+5]_8 chr16:85522838-85523338 2.1e-08 35_[+5]_43 chr17:81531588-81532088 2.1e-08 49_[+5]_29 chr12:131540125-13154062 6.9e-08 52_[+5]_26 chr1:228781979-228782479 9.5e-08 69_[+5]_9 chr12:2812926-2813426 9.5e-08 74_[+5]_4 chr19:30338103-30338603 1.1e-07 11_[+5]_67 chr1:228782288-228782788 1.2e-07 19_[+5]_59 chr17:44590595-44591095 1.2e-07 74_[+5]_4 chr1:235505702-235506202 2e-07 24_[-5]_54 chr4:189234913-189235413 2.4e-07 21_[+5]_57 chr4:189233708-189234208 2.4e-07 2_[+5]_76 chr5:171493868-171494368 2.7e-07 27_[-5]_51 chr4:1514078-1514578 3.6e-07 [+5]_78 chr19:40284444-40284944 4e-07 1_[-5]_77 chr16:86932262-86932762 4.4e-07 9_[+5]_69 chr5:856472-856972 4.8e-07 78_[-5] chr5:43064241-43064741 5.8e-07 4_[-5]_74 chr10:46525211-46525711 6.9e-07 73_[-5]_5 chr17:6069531-6070031 7.6e-07 71_[+5]_7 chr19:33249636-33250136 8.3e-07 71_[-5]_7 chr15:70097501-70098001 8.3e-07 55_[-5]_23 chr1:228867808-228868308 9e-07 65_[+5]_13 chr1:241640627-241641127 1.3e-06 1_[-5]_77 chr12:57111934-57112434 1.6e-06 71_[-5]_7 chr16:86932041-86932541 2.1e-06 71_[+5]_7 chr5:1929088-1929588 2.3e-06 50_[+5]_28 chr19:6229582-6230082 2.3e-06 71_[-5]_7 chr16:2182127-2182627 3.3e-06 72_[-5]_6 chr19:44261730-44262230 3.9e-06 33_[+5]_45 chr1:26788218-26788718 6e-06 77_[-5]_1 chrUn_KI270467v1:3138-36 6.9e-06 14_[+5]_64 chr8:142816933-142817433 7.4e-06 9_[-5]_69 chr4:49709150-49709650 8.5e-06 75_[-5]_3 chrX:135051119-135051619 1.5e-05 15_[+5]_63 chr5:139274479-139274979 2.3e-05 78_[-5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGDTGTKTGTGGTGWKKGTGDT width=22 seqs=52 chr18:49019533-49020033 ( 20) TGATGTGTGTGGTGTGTGTGGT 1 chr2:241864216-241864716 ( 58) TGTGGTGTGTGGTGTGTGTGTA 1 chrX:153382858-153383358 ( 19) AGGTGTGTGTGGTGTGTGTGTT 1 chr17:81253420-81253920 ( 61) TGATGATGGTGATGTTGGTGGT 1 chr22:39565423-39565923 ( 59) TGATGATGATGGTGTTGGTGGT 1 chr12:115177837-11517833 ( 72) TGATGATGGTGGTGATAGTGAT 1 chr16:86224535-86225035 ( 4) TGATGGTGATGGTGTTGGTGTT 1 chr1:47591840-47592340 ( 12) TTGTGTGTGTAGTGTGTGTGAG 1 chr16:86588029-86588529 ( 54) TGATGATGGTGGTGATGATGAT 1 chr16:85823166-85823666 ( 51) TGATGAGGATGGTGATGGTGAT 1 chr5:176591612-176592112 ( 14) TGATGGTGGTGATGATGGTGTT 1 chr7:150003326-150003826 ( 5) TGTGGTATGTGCTGTGTGTGGT 1 chr16:89068627-89069127 ( 29) TGATGATGGTGATGATGATGGT 1 chr17:81424567-81425067 ( 21) TGTGGTTTGTGGTGATAGTGCT 1 chr12:130764505-13076500 ( 24) TTATTGATGTGGTGTTGATGAT 1 chr19:30435112-30435612 ( 77) TGATGATGATGCTGTTGATGGT 1 chr1:223558454-223558954 ( 71) TATGATGTGTGATGTGTGTGGT 1 chr16:85522838-85523338 ( 36) TGTTGTGTGTGGCCTGTGTGTG 1 chr17:81531588-81532088 ( 50) TGGTGGTGATGGTGATGGTGGT 1 chr12:131540125-13154062 ( 53) TGTTGGTGATGGTGATCATGAT 1 chr1:228781979-228782479 ( 70) GTGTGTATGTGGTCTGTGTGGT 1 chr12:2812926-2813426 ( 75) TAATTTTTGTGTTTTTAGTAGA 1 chr19:30338103-30338603 ( 12) TGATGATGATGATGACAATGTT 1 chr1:228782288-228782788 ( 20) GTGTGTGTGTGGTCTGTGTGTA 1 chr17:44590595-44591095 ( 75) TGTGTATTGTGTCTAGTGTGTT 1 chr1:235505702-235506202 ( 25) TAATTTTTGTATTTTTAGTAGA 1 chr4:189234913-189235413 ( 22) TGTTTGGTGTAGTTGTAGTAGT 1 chr4:189233708-189234208 ( 3) TGTTTGGTGTAGTTGTAGTAGT 1 chr5:171493868-171494368 ( 28) ATGTGTGTGTTGTGTGTGTGCT 1 chr4:1514078-1514578 ( 1) TGATGGTGATAGTGACAATGAT 1 chr19:40284444-40284944 ( 2) AGAGGACTGTGATGTTTGTGAT 1 chr16:86932262-86932762 ( 10) GTTTGAGTGTGAGGTGTGTGAA 1 chr5:856472-856972 ( 79) TGTGGTGTGTATTCTGTGTGCG 1 chr5:43064241-43064741 ( 5) TAATTTTTGTATTTTTCGTAGA 1 chr10:46525211-46525711 ( 74) TGATGTGTGTGTGTGGGGTGTA 1 chr17:6069531-6070031 ( 72) GTGCGTGTGTGGTGTGTGTGTG 1 chr19:33249636-33250136 ( 72) GTCTGTGTGTGGTGTGTGCGTG 1 chr15:70097501-70098001 ( 56) GGGTGTGTGTGTTTTGGGGGTT 1 chr1:228867808-228868308 ( 66) TGTGGAGAGTGGTGAGCGTGGG 1 chr1:241640627-241641127 ( 2) TTTTGTTTACATTGAGTGTATG 1 chr12:57111934-57112434 ( 72) TGTGTGGTGTTGTGATTGCAAT 1 chr16:86932041-86932541 ( 72) ATGGGTGTGTGAGGTGTGTGGG 1 chr5:1929088-1929588 ( 51) TGTTGTGTGTGTCTGGCATGTG 1 chr19:6229582-6230082 ( 72) TGTGTCGTGTGCGGTGTGTGGT 1 chr16:2182127-2182627 ( 73) GTGTGTGTGTTGTGGCTGTGTG 1 chr19:44261730-44262230 ( 34) TTTTAAGGATGACCTTGATGTT 1 chr1:26788218-26788718 ( 78) TGCTAGGTATGCTTAGGGTAGT 1 chrUn_KI270467v1:3138-36 ( 15) TATTTTATGTACAGTTTACAAT 1 chr8:142816933-142817433 ( 10) TTGTGTAAGTAACGTCTATGTG 1 chr4:49709150-49709650 ( 76) TATTTTATGTACAGTATATAAT 1 chrX:135051119-135051619 ( 16) TGCGGTGGATGGCGATGGCAGT 1 chr5:139274479-139274979 ( 79) TATTTTTAGTAGAGACGGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.9958 E= 7.6e-063 -136 -1234 -117 200 -55 -1234 103 34 81 -239 -51 96 -1234 -397 -39 192 -178 -1234 123 22 34 -397 -65 145 -78 -397 73 89 -178 -1234 -7 173 22 -1234 135 -1234 -1234 -397 -1234 231 22 -1234 123 -178 -4 -139 78 -19 -178 -139 -197 192 -1234 -165 123 -4 73 -1234 -165 154 -336 -165 55 116 -36 -197 3 122 22 -1234 135 -1234 -1234 -197 -297 216 10 -1234 138 -1234 22 -239 27 81 -55 -1234 -51 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 52 E= 7.6e-063 0.076923 0.000000 0.134615 0.788462 0.134615 0.000000 0.615385 0.250000 0.346154 0.057692 0.211538 0.384615 0.000000 0.019231 0.230769 0.750000 0.057692 0.000000 0.711538 0.230769 0.250000 0.019231 0.192308 0.538462 0.115385 0.019231 0.500000 0.365385 0.057692 0.000000 0.288462 0.653846 0.230769 0.000000 0.769231 0.000000 0.000000 0.019231 0.000000 0.980769 0.230769 0.000000 0.711538 0.057692 0.192308 0.115385 0.519231 0.173077 0.057692 0.115385 0.076923 0.750000 0.000000 0.096154 0.711538 0.192308 0.326923 0.000000 0.096154 0.576923 0.019231 0.096154 0.442308 0.442308 0.153846 0.076923 0.307692 0.461538 0.230769 0.000000 0.769231 0.000000 0.000000 0.076923 0.038462 0.884615 0.211538 0.000000 0.788462 0.000000 0.230769 0.057692 0.365385 0.346154 0.134615 0.000000 0.211538 0.653846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDTGTKTGTGGTGWKKGTGDT MEME-5 regular expression -------------------------------------------------------------------------------- T[GT][TAG][TG][GT][TA][GT][TG][GA]T[GA]GTG[TA][GT][TG][GA]T[GA][GTA][TG] -------------------------------------------------------------------------------- Time 1802.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 width = 31 sites = 12 llr = 306 E-value = 2.2e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 Description -------------------------------------------------------------------------------- Simplified A :5:49:2311::95:215:19:::119:61: pos.-specific C :2::::6:92::::738:1:1::421::137 probability G a:a5:137:::a15311499:951681a3:: matrix T :3:119:::8a::::411:::15521::163 bits 2.3 * 2.1 * 1.9 ** * * * * 1.6 * * ** *** * ** Relative 1.4 * * ** * *** **** ** Entropy 1.2 * * ** ***** **** ** (36.8 bits) 0.9 * * ** ******* ***** ** ** 0.7 ****** ******** ******** *** ** 0.5 *************** ******** ****** 0.2 ******************************* 0.0 ------------------------------- Multilevel GAGGATCGCTTGAACTCAGGAGGTGGAGATC consensus T A GA GGC G TC GCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:48717104-48717604 + 28 2.24e-16 gctgaggcag gagaatcgcttgaacccgggaggcggagatc gcagtgagcc chr19:34133679-34134179 + 60 6.79e-15 gctgaggcag gagaatcgcttgaacacgggaggcggaggtt gagccgagat chr17:2282691-2283191 + 53 2.52e-14 gcggaggcag gcggatcacttgaggtcaggagtttgagacc agcctgacca chr19:44215507-44216007 + 54 4.61e-14 gcctaggcgg gtggatcacctgaagtcaggagtttgagacc agcctggcca chr21:43660211-43660711 + 59 5.84e-14 gctgaggcag gagaatcgcttgaacctgggaggcggaggtt gcggtgagcc chr19:40349663-40350163 + 3 1.42e-13 ag gagaatggcttgaaccggggaggtggaggtt gcagtgagcc chr19:33372942-33373442 - 31 2.16e-13 GCCGAGGCGG GAGAATGGCTTGAGCCCAGGCGTTGGAGAAC CAGCCTGGAC chr19:38234162-38234662 + 54 2.63e-12 gcggaggcag gcggatcacctgaggtcaggagttcaagacc agcctggcca chr17:47280346-47280846 - 25 3.95e-12 GCCGACACGG GTGGATAACTTGAGCTCAGGAGTTCCGGACC ACCCTGGGCC chr16:30558751-30559251 + 68 5.02e-12 gctgaggcag gagtatcgcttgaacgcgcgaggcggagttt gc chr12:52372872-52373372 + 50 5.26e-10 cagcacagtg gtggtgagcatgggctcaggagtcagagctc ctgtgcctca chr19:30068782-30069282 - 1 7.59e-10 CTTGGGATGG GTGGATGGATTGAGGAATGAATGGGTAGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:48717104-48717604 2.2e-16 27_[+6]_42 chr19:34133679-34134179 6.8e-15 59_[+6]_10 chr17:2282691-2283191 2.5e-14 52_[+6]_17 chr19:44215507-44216007 4.6e-14 53_[+6]_16 chr21:43660211-43660711 5.8e-14 58_[+6]_11 chr19:40349663-40350163 1.4e-13 2_[+6]_67 chr19:33372942-33373442 2.2e-13 30_[-6]_39 chr19:38234162-38234662 2.6e-12 53_[+6]_16 chr17:47280346-47280846 3.9e-12 24_[-6]_45 chr16:30558751-30559251 5e-12 67_[+6]_2 chr12:52372872-52373372 5.3e-10 49_[+6]_20 chr19:30068782-30069282 7.6e-10 [-6]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGRATCRCTTGARSYCRGGAGKYGGAGAYY width=31 seqs=12 chr12:48717104-48717604 ( 28) GAGAATCGCTTGAACCCGGGAGGCGGAGATC 1 chr19:34133679-34134179 ( 60) GAGAATCGCTTGAACACGGGAGGCGGAGGTT 1 chr17:2282691-2283191 ( 53) GCGGATCACTTGAGGTCAGGAGTTTGAGACC 1 chr19:44215507-44216007 ( 54) GTGGATCACCTGAAGTCAGGAGTTTGAGACC 1 chr21:43660211-43660711 ( 59) GAGAATCGCTTGAACCTGGGAGGCGGAGGTT 1 chr19:40349663-40350163 ( 3) GAGAATGGCTTGAACCGGGGAGGTGGAGGTT 1 chr19:33372942-33373442 ( 31) GAGAATGGCTTGAGCCCAGGCGTTGGAGAAC 1 chr19:38234162-38234662 ( 54) GCGGATCACCTGAGGTCAGGAGTTCAAGACC 1 chr17:47280346-47280846 ( 25) GTGGATAACTTGAGCTCAGGAGTTCCGGACC 1 chr16:30558751-30559251 ( 68) GAGTATCGCTTGAACGCGCGAGGCGGAGTTT 1 chr12:52372872-52373372 ( 50) GTGGTGAGCATGGGCTCAGGAGTCAGAGCTC 1 chr19:30068782-30069282 ( 1) GTGGATGGATTGAGGAATGAATGGGTAGATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 11.4316 E= 2.2e-027 -1023 -1023 173 -1023 134 -86 -1023 75 -1023 -1023 173 -1023 107 -1023 73 -124 221 -1023 -1023 -124 -1023 -1023 -186 221 -25 95 -27 -1023 75 -1023 114 -1023 -124 160 -1023 -1023 -124 -86 -1023 192 -1023 -1023 -1023 234 -1023 -1023 173 -1023 221 -1023 -186 -1023 134 -1023 73 -1023 -1023 114 14 -1023 -25 14 -186 107 -124 131 -186 -124 134 -1023 46 -124 -1023 -186 160 -1023 -124 -1023 160 -1023 221 -186 -1023 -1023 -1023 -1023 160 -124 -1023 -1023 73 134 -1023 46 -186 134 -124 -86 95 -25 -124 -186 131 -124 221 -1023 -186 -1023 -1023 -1023 173 -1023 156 -186 -27 -124 -124 14 -1023 156 -1023 114 -1023 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 12 E= 2.2e-027 0.000000 0.000000 1.000000 0.000000 0.500000 0.166667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.416667 0.000000 0.500000 0.083333 0.916667 0.000000 0.000000 0.083333 0.000000 0.000000 0.083333 0.916667 0.166667 0.583333 0.250000 0.000000 0.333333 0.000000 0.666667 0.000000 0.083333 0.916667 0.000000 0.000000 0.083333 0.166667 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.666667 0.333333 0.000000 0.166667 0.333333 0.083333 0.416667 0.083333 0.750000 0.083333 0.083333 0.500000 0.000000 0.416667 0.083333 0.000000 0.083333 0.916667 0.000000 0.083333 0.000000 0.916667 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.500000 0.500000 0.000000 0.416667 0.083333 0.500000 0.083333 0.166667 0.583333 0.166667 0.083333 0.083333 0.750000 0.083333 0.916667 0.000000 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.583333 0.083333 0.250000 0.083333 0.083333 0.333333 0.000000 0.583333 0.000000 0.666667 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRATCRCTTGARSYCRGGAGKYGGAGAYY MEME-6 regular expression -------------------------------------------------------------------------------- G[AT]G[GA]AT[CG][GA]CTTGA[AG][CG][TC]C[AG]GGAG[GT][TC]GGAG[AG][TC][CT] -------------------------------------------------------------------------------- Time 2130.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 width = 30 sites = 53 llr = 677 E-value = 1.7e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 Description -------------------------------------------------------------------------------- Simplified A 1:1:3::131::211211:21:212::12: pos.-specific C 535533844377617635816565539523 probability G 1:2::2::::1:11114::121::21::21 matrix T 262446253633172224261424261436 bits 2.3 2.1 1.9 1.6 Relative 1.4 Entropy 1.2 * * (18.4 bits) 0.9 * * * * * * * 0.7 * * *** *** * *** *** *** * 0.5 * ************ *** *** *** * 0.2 **************** ******* *** * 0.0 ------------------------------ Multilevel CTCCTTCTCTCCCTCCGCCTCCCCCTCCTT consensus TCGTAC CTCTTA TCTTA TTTAC TAC sequence T C A T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr1:161097425-161097925 + 59 8.44e-14 ctctctctct ctctatctctctctctctctctctctctct ctctctctct chr16:981035-981535 - 70 3.66e-13 T CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CACACACACA chr19:37293451-37293951 - 70 1.70e-11 T CTCTCTCTCTCTCTCTGTCTCTCTCCCTTC TCGCTCTTTC chr12:132597532-13259803 + 71 2.95e-10 ctgactgtct ctccttctctgtctctgcctctccttctct chr19:30067614-30068114 + 19 2.95e-10 ccatccatcc atccatccatccatccatctatccatccat ccctccattc chr14:21070396-21070896 + 11 1.30e-09 CTCACCCTTt cttcctcctctcctccgcctcctcccccat cctcccttgg chr12:10722136-10722636 + 7 4.30e-09 AAGCTT TTCTATCTTTCCCTCCCCGTCTCCTTCTAG CGCCCTCCTC chr19:34057085-34057585 - 70 5.72e-09 C ATTCATCCATCCATCCATCTACCCACCCAT CCACTCATCC chr16:54286403-54286903 + 21 1.49e-08 GGTCCGTTCC CTTCACTTCTTCCTTTCTCACTACTTCTAT TTTGTAAATC chr16:57735892-57736392 - 39 1.69e-08 TCGCGGGGTC TCCCATTCATTCATTCTCCTACTTCTCTTC TCCCTATTCA chr12:6723423-6723923 + 68 2.19e-08 TCCTCATCCC GTTTTTTTCCCTCTTCTTCACTCCTTCCGT TAC chr15:69761093-69761593 + 20 2.83e-08 ccatccattt atgcatccatccatccatccatccatccat ccatccatcc chr1:161131954-161132454 + 14 2.83e-08 CAGCCCCCTT CCCCTTCACACCCTCAGCCTCTCCCTCCTG CTCCTACCCC chr19:3210498-3210998 - 23 3.20e-08 ACAACCTGCC CTGTCCCTTCCCCACCCTCACTCCCTCTGC TCGAGCCACA chr5:43074070-43074570 - 23 4.10e-08 TCAGCAGTAT CTGCTTCTTTTCCTACACCGCCCCCTCCTC AGGACAATTC chr1:85707840-85708340 + 56 4.62e-08 TTTGTCCACT TCCTTCCTCTCCATCCCCTATCTCCTTTAT CCCTGTCAGC chr16:30806051-30806551 + 47 5.22e-08 CAGTTTTTCT CTCCTGCTTTCCGTCCGCTTCCCTCGTCCT CCCTTGACCA chr17:44087285-44087785 + 17 9.36e-08 tgcaatcctc ctcctcctccccatcgtcttcctcgtcctc ctcctccAGG chr7:143362032-143362532 - 59 1.64e-07 GCGCGGTCCT CTCCATCCTCTCCATCGCCCTCCTCTCCTC TGCCTCTCGG chr12:6904974-6905474 - 53 2.52e-07 CTCCAATCTT CCCTACCAATTCCTCCTCCTCTCCTCTCAG CTCCCATTGC chr1:52726704-52727204 + 41 2.79e-07 GTGACAGCCT TTTTCGCATTCCCTTTGTCGCCCACTCCTT GTCCTTTAAC chr1:231527718-231528218 - 4 3.10e-07 ATGAAGCACG CAACTTCTCTGCCTCAGTTTCCTTATCTGT AAC chr10:100655878-10065637 + 15 3.44e-07 GGCAGTGGAG CCCCATTCTCCTCTCCCCCATCCCACCTCC AAGGGTCCCC chr1:31413654-31414154 + 13 4.66e-07 ctttgtccgt ctgctgtcttctgtccgtctgcccgtccgc ccgtccgtcc chr12:6927361-6927861 + 69 4.66e-07 AACTCGCGCT GCGCCTCCCCCTCTCCGGCTCCCCCTCTCT CC chr18:59358709-59359209 - 59 5.14e-07 GGCCGGGTTC CTCTCCCCCTTCTGCTGCCTCTTCGCCTTT CATCCGCGGC chr18:50878489-50878989 + 2 5.68e-07 T CTCCTGCCCTCCCGTTCTCCCCCTTCCTCT GTGGCTCAGG chr19:38800818-38801318 - 11 1.01e-06 ACATGCAACT ATTCATCTACTCACCAGTCTGTCTAGCTCT ATCCAGCTGT chr12:57220655-57221155 + 57 1.01e-06 TGCCTGTCCC CTGTGCTTATCCCTCATCCACCATTCCTGT CCCCATGCTG chr17:7836675-7837175 + 37 1.11e-06 AATGAGGCTT CCTCCCCCTTCTATTCCCTCCCACCTCTGC CCCGAGTCCA chr19:43503614-43504114 + 6 1.11e-06 CTGGT TTCCCTCTACCTGTCTACCTGTCTGGCCAC CTGTTTGGGT chr17:31008667-31009167 - 30 1.11e-06 AACTAGGCCT TCCCATTCCTCCAACCCCCAACTCACCATT GATCGCGATC chr19:33081226-33081726 - 51 1.74e-06 CGTCATTTTC TTGTTTCTATCTCGCCGCCCCCTTGTTCGG CCACGCTTGT chr6:170398613-170399113 - 69 1.89e-06 AG TTCTACCTTTCCCACTCACTCCTAAGTTAT GACATAGTTC chr1:147599061-147599561 - 17 2.07e-06 TTCCTGTCCC TTCTCTCCACCTCTGAGTCTGCACCGCCTG GGCCATGGCC chr16:58392289-58392789 + 16 2.67e-06 GACCCCAACC ATCCTGCCCAGTCTCCGCTTCCCCGTCTTG TACACCCCTA chr12:109879794-10988029 - 39 2.67e-06 GTCACATCCT GCCTGTCCTCCCCAAATCCTCCCTCTCCCT AGACACCTCA chr18:24015028-24015528 + 65 2.91e-06 CGCCCGCAGT CCCCCTCTCACTTTCTCCCAGCCTCGCCCT CCCACA chr15:70097501-70098001 + 12 2.91e-06 CTCTACGGCT TCCTTCCTTCCCCTCGGCCCGGCTCTCCTC TCCGCGCCCC chr1:161117558-161118058 + 10 3.16e-06 AGGCGTGGC TCTCACCTACCCACCCGTCTACCTCTCCGA AGGGGTTCGG chr1:224013060-224013560 - 23 3.16e-06 CCATTCGCAT CCATTTCATTCCATTACATTCCATTCCATT CGAGTCCATT chr1:241640627-241641127 - 66 3.43e-06 CACCT GTCTATCAATTTGTTGTTTTTCTTCTCAGT TTTCCGGTAA chr12:6914652-6915152 + 9 3.72e-06 CTCTGCGC GCCTATCTCTAACTGCGCCTCTCCACCCTT GCCTGCCTCT chr1:226703066-226703566 + 30 4.04e-06 GGAACCAGGC GTGCCTCCATTTCTCACTCGATTTGTTTAC AATGAACGGA chr18:9708387-9708887 + 44 5.55e-06 GTCCGTGCGC CCCTCGCTCTCCGCGCCCCTCGCTCTCCGC ACCCCGCCTG chr11:73376983-73377483 - 5 6.48e-06 CTCGGCTCGT TCTCAGTCACTTGGGCTCCTCTCCCTCTAT TTCA chr10:41882324-41882824 - 45 8.75e-06 CCATTCCACT TTGGTTCATTCCATTCCATTCCATTCCATT CCACTGTGGT chr17:17693838-17694338 + 10 1.17e-05 AGTCAGTGT CTGCTCTCATCCTACCCTTGTCCCGTCATT GCTGGCAGGA chr19:43640045-43640545 - 43 1.26e-05 CACCTTTCCC ACGTCGCACTCCCTCCCTTACGCTCCCCCG TCACGCTGGC chr12:401642-402142 - 67 1.35e-05 TCCC GTACTCCTTTTCCCACTTCATCCCATTCTC GACCGCCTCA chr5:180810214-180810714 - 8 1.45e-05 TGGCCAGTCT CTTCTGCCCCTCCCCCTCCTGTACGGCCGC TACTCTG chr1:32205810-32206310 + 19 1.55e-05 CACAGCCCAC CTATCCTTTCCCCGCCGTCAGGTCCCCTCT TGCATTCGCC chr7:116592551-116593051 - 37 1.55e-05 ACAATGGATT CATTTTCCCTTCAAGGTCTTCTAAATCTAT CACCTCTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161097425-161097925 8.4e-14 58_[+7]_12 chr16:981035-981535 3.7e-13 69_[-7]_1 chr19:37293451-37293951 1.7e-11 69_[-7]_1 chr12:132597532-13259803 2.9e-10 70_[+7] chr19:30067614-30068114 2.9e-10 18_[+7]_52 chr14:21070396-21070896 1.3e-09 10_[+7]_60 chr12:10722136-10722636 4.3e-09 6_[+7]_64 chr19:34057085-34057585 5.7e-09 69_[-7]_1 chr16:54286403-54286903 1.5e-08 20_[+7]_50 chr16:57735892-57736392 1.7e-08 38_[-7]_32 chr12:6723423-6723923 2.2e-08 67_[+7]_3 chr15:69761093-69761593 2.8e-08 19_[+7]_51 chr1:161131954-161132454 2.8e-08 13_[+7]_57 chr19:3210498-3210998 3.2e-08 22_[-7]_48 chr5:43074070-43074570 4.1e-08 22_[-7]_48 chr1:85707840-85708340 4.6e-08 55_[+7]_15 chr16:30806051-30806551 5.2e-08 46_[+7]_24 chr17:44087285-44087785 9.4e-08 16_[+7]_54 chr7:143362032-143362532 1.6e-07 58_[-7]_12 chr12:6904974-6905474 2.5e-07 52_[-7]_18 chr1:52726704-52727204 2.8e-07 40_[+7]_30 chr1:231527718-231528218 3.1e-07 3_[-7]_67 chr10:100655878-10065637 3.4e-07 14_[+7]_56 chr1:31413654-31414154 4.7e-07 12_[+7]_58 chr12:6927361-6927861 4.7e-07 68_[+7]_2 chr18:59358709-59359209 5.1e-07 58_[-7]_12 chr18:50878489-50878989 5.7e-07 1_[+7]_69 chr19:38800818-38801318 1e-06 10_[-7]_60 chr12:57220655-57221155 1e-06 56_[+7]_14 chr17:7836675-7837175 1.1e-06 36_[+7]_34 chr19:43503614-43504114 1.1e-06 5_[+7]_65 chr17:31008667-31009167 1.1e-06 29_[-7]_41 chr19:33081226-33081726 1.7e-06 50_[-7]_20 chr6:170398613-170399113 1.9e-06 68_[-7]_2 chr1:147599061-147599561 2.1e-06 16_[-7]_54 chr16:58392289-58392789 2.7e-06 15_[+7]_55 chr12:109879794-10988029 2.7e-06 38_[-7]_32 chr18:24015028-24015528 2.9e-06 64_[+7]_6 chr15:70097501-70098001 2.9e-06 11_[+7]_59 chr1:161117558-161118058 3.2e-06 9_[+7]_61 chr1:224013060-224013560 3.2e-06 22_[-7]_48 chr1:241640627-241641127 3.4e-06 65_[-7]_5 chr12:6914652-6915152 3.7e-06 8_[+7]_62 chr1:226703066-226703566 4e-06 29_[+7]_41 chr18:9708387-9708887 5.5e-06 43_[+7]_27 chr11:73376983-73377483 6.5e-06 4_[-7]_66 chr10:41882324-41882824 8.8e-06 44_[-7]_26 chr17:17693838-17694338 1.2e-05 9_[+7]_61 chr19:43640045-43640545 1.3e-05 42_[-7]_28 chr12:401642-402142 1.3e-05 66_[-7]_4 chr5:180810214-180810714 1.4e-05 7_[-7]_63 chr1:32205810-32206310 1.5e-05 18_[+7]_52 chr7:116592551-116593051 1.5e-05 36_[-7]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY width=30 seqs=53 chr1:161097425-161097925 ( 59) CTCTATCTCTCTCTCTCTCTCTCTCTCTCT 1 chr16:981035-981535 ( 70) CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1 chr19:37293451-37293951 ( 70) CTCTCTCTCTCTCTCTGTCTCTCTCCCTTC 1 chr12:132597532-13259803 ( 71) CTCCTTCTCTGTCTCTGCCTCTCCTTCTCT 1 chr19:30067614-30068114 ( 19) ATCCATCCATCCATCCATCTATCCATCCAT 1 chr14:21070396-21070896 ( 11) CTTCCTCCTCTCCTCCGCCTCCTCCCCCAT 1 chr12:10722136-10722636 ( 7) TTCTATCTTTCCCTCCCCGTCTCCTTCTAG 1 chr19:34057085-34057585 ( 70) ATTCATCCATCCATCCATCTACCCACCCAT 1 chr16:54286403-54286903 ( 21) CTTCACTTCTTCCTTTCTCACTACTTCTAT 1 chr16:57735892-57736392 ( 39) TCCCATTCATTCATTCTCCTACTTCTCTTC 1 chr12:6723423-6723923 ( 68) GTTTTTTTCCCTCTTCTTCACTCCTTCCGT 1 chr15:69761093-69761593 ( 20) ATGCATCCATCCATCCATCCATCCATCCAT 1 chr1:161131954-161132454 ( 14) CCCCTTCACACCCTCAGCCTCTCCCTCCTG 1 chr19:3210498-3210998 ( 23) CTGTCCCTTCCCCACCCTCACTCCCTCTGC 1 chr5:43074070-43074570 ( 23) CTGCTTCTTTTCCTACACCGCCCCCTCCTC 1 chr1:85707840-85708340 ( 56) TCCTTCCTCTCCATCCCCTATCTCCTTTAT 1 chr16:30806051-30806551 ( 47) CTCCTGCTTTCCGTCCGCTTCCCTCGTCCT 1 chr17:44087285-44087785 ( 17) CTCCTCCTCCCCATCGTCTTCCTCGTCCTC 1 chr7:143362032-143362532 ( 59) CTCCATCCTCTCCATCGCCCTCCTCTCCTC 1 chr12:6904974-6905474 ( 53) CCCTACCAATTCCTCCTCCTCTCCTCTCAG 1 chr1:52726704-52727204 ( 41) TTTTCGCATTCCCTTTGTCGCCCACTCCTT 1 chr1:231527718-231528218 ( 4) CAACTTCTCTGCCTCAGTTTCCTTATCTGT 1 chr10:100655878-10065637 ( 15) CCCCATTCTCCTCTCCCCCATCCCACCTCC 1 chr1:31413654-31414154 ( 13) CTGCTGTCTTCTGTCCGTCTGCCCGTCCGC 1 chr12:6927361-6927861 ( 69) GCGCCTCCCCCTCTCCGGCTCCCCCTCTCT 1 chr18:59358709-59359209 ( 59) CTCTCCCCCTTCTGCTGCCTCTTCGCCTTT 1 chr18:50878489-50878989 ( 2) CTCCTGCCCTCCCGTTCTCCCCCTTCCTCT 1 chr19:38800818-38801318 ( 11) ATTCATCTACTCACCAGTCTGTCTAGCTCT 1 chr12:57220655-57221155 ( 57) CTGTGCTTATCCCTCATCCACCATTCCTGT 1 chr17:7836675-7837175 ( 37) CCTCCCCCTTCTATTCCCTCCCACCTCTGC 1 chr19:43503614-43504114 ( 6) TTCCCTCTACCTGTCTACCTGTCTGGCCAC 1 chr17:31008667-31009167 ( 30) TCCCATTCCTCCAACCCCCAACTCACCATT 1 chr19:33081226-33081726 ( 51) TTGTTTCTATCTCGCCGCCCCCTTGTTCGG 1 chr6:170398613-170399113 ( 69) TTCTACCTTTCCCACTCACTCCTAAGTTAT 1 chr1:147599061-147599561 ( 17) TTCTCTCCACCTCTGAGTCTGCACCGCCTG 1 chr16:58392289-58392789 ( 16) ATCCTGCCCAGTCTCCGCTTCCCCGTCTTG 1 chr12:109879794-10988029 ( 39) GCCTGTCCTCCCCAAATCCTCCCTCTCCCT 1 chr18:24015028-24015528 ( 65) CCCCCTCTCACTTTCTCCCAGCCTCGCCCT 1 chr15:70097501-70098001 ( 12) TCCTTCCTTCCCCTCGGCCCGGCTCTCCTC 1 chr1:161117558-161118058 ( 10) TCTCACCTACCCACCCGTCTACCTCTCCGA 1 chr1:224013060-224013560 ( 23) CCATTTCATTCCATTACATTCCATTCCATT 1 chr1:241640627-241641127 ( 66) GTCTATCAATTTGTTGTTTTTCTTCTCAGT 1 chr12:6914652-6915152 ( 9) GCCTATCTCTAACTGCGCCTCTCCACCCTT 1 chr1:226703066-226703566 ( 30) GTGCCTCCATTTCTCACTCGATTTGTTTAC 1 chr18:9708387-9708887 ( 44) CCCTCGCTCTCCGCGCCCCTCGCTCTCCGC 1 chr11:73376983-73377483 ( 5) TCTCAGTCACTTGGGCTCCTCTCCCTCTAT 1 chr10:41882324-41882824 ( 45) TTGGTTCATTCCATTCCATTCCATTCCATT 1 chr17:17693838-17694338 ( 10) CTGCTCTCATCCTACCCTTGTCCCGTCATT 1 chr19:43640045-43640545 ( 43) ACGTCGCACTCCCTCCCTTACGCTCCCCCG 1 chr12:401642-402142 ( 67) GTACTCCTTTTCCCACTTCATCCCATTCTC 1 chr5:180810214-180810714 ( 8) CTTCTGCCCCTCCCCCTCCTGTACGGCCGC 1 chr1:32205810-32206310 ( 19) CTATCCTTTCCCCGCCGTCAGGTCCCCTCT 1 chr7:116592551-116593051 ( 37) CATTTTCCCTTCAAGGTCTTCTAAATCTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.2905 E= 1.7e-028 -80 75 -119 31 -239 9 -1237 170 -139 75 -54 7 -1237 86 -400 113 70 -10 -300 86 -1237 -19 -83 152 -1237 142 -1237 -7 -58 39 -1237 125 52 39 -1237 70 -180 0 -1237 170 -339 113 -242 42 -339 113 -1237 70 31 95 -142 -180 -58 -168 -168 178 -180 113 -168 -7 -39 90 -200 7 -107 17 25 7 -180 75 -400 107 -1237 132 -400 20 7 -142 -200 161 -58 100 -100 -80 -1237 86 -200 93 -39 104 -1237 20 -180 81 -1237 107 7 58 -83 -22 -1237 -19 -119 161 -1237 152 -1237 -58 -107 64 -1237 113 31 -42 -54 70 -339 -10 -119 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 53 E= 1.7e-028 0.113208 0.509434 0.132075 0.245283 0.037736 0.320755 0.000000 0.641509 0.075472 0.509434 0.207547 0.207547 0.000000 0.547170 0.018868 0.433962 0.320755 0.283019 0.037736 0.358491 0.000000 0.264151 0.169811 0.566038 0.000000 0.811321 0.000000 0.188679 0.132075 0.396226 0.000000 0.471698 0.283019 0.396226 0.000000 0.320755 0.056604 0.301887 0.000000 0.641509 0.018868 0.660377 0.056604 0.264151 0.018868 0.660377 0.000000 0.320755 0.245283 0.584906 0.113208 0.056604 0.132075 0.094340 0.094340 0.679245 0.056604 0.660377 0.094340 0.188679 0.150943 0.566038 0.075472 0.207547 0.094340 0.339623 0.358491 0.207547 0.056604 0.509434 0.018868 0.415094 0.000000 0.754717 0.018868 0.226415 0.207547 0.113208 0.075472 0.603774 0.132075 0.603774 0.150943 0.113208 0.000000 0.547170 0.075472 0.377358 0.150943 0.622642 0.000000 0.226415 0.056604 0.528302 0.000000 0.415094 0.207547 0.452830 0.169811 0.169811 0.000000 0.264151 0.132075 0.603774 0.000000 0.867925 0.000000 0.132075 0.094340 0.471698 0.000000 0.433962 0.245283 0.226415 0.207547 0.320755 0.018868 0.283019 0.132075 0.566038 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYHTCYHTCCCTCCBYCTCYCYCTCYNY MEME-7 regular expression -------------------------------------------------------------------------------- [CT][TC][CGT][CT][TAC][TC]C[TC][CTA][TC][CT][CT][CA]TC[CT][GCT][CT][CT][TA]C[CT][CT][CT][CA][TC]C[CT][TACG][TC] -------------------------------------------------------------------------------- Time 2457.04 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTRTGTGTG MEME-8 width = 16 sites = 45 llr = 533 E-value = 7.0e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 Description -------------------------------------------------------------------------------- Simplified A 2:::::2::312:32: pos.-specific C 122::1113::12::1 probability G 28:918:9:6:7:619 matrix T 5:8:818:719:817: bits 2.3 2.1 1.9 1.6 * * Relative 1.4 * * * * Entropy 1.2 *** *** * * ** (17.1 bits) 0.9 ******* * * ** 0.7 ********** **** 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel TGTGTGTGTGTGTGTG consensus G CA AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr8:37701159-37701659 + 73 1.63e-10 tgtgtgtgtg tgtgtgtgtgtgtgtg tgtgtgtgtg chr10:122703391-12270389 - 80 7.33e-10 GTATA TGTGTGTGTATATGTG TCTGTGTGTG chr18:63198247-63198747 - 12 8.12e-09 TCTCTGTCAG TGTGTGTCTGTGTGTG TCTCTGTGTC chrX:118218024-118218524 + 66 1.46e-08 tgtgtgtgca tgtgtctgtatgtgtg agcatatgtg chr15:70530162-70530662 - 11 2.74e-08 TGTGTCTGTG AGTGTGTGTTTATGTG ACTGTGAGTG chr10:46525211-46525711 - 32 3.36e-08 GTGTGTGTGA TGTGTGTTTGTGTGTG GGGTATGTGT chr17:82281389-82281889 + 39 4.57e-08 tgtgtgtgca tgtgtgtccgtgtgtg cctatgtccg chr2:234969697-234970197 - 1 5.17e-08 TGTGTGACAG AGTGTGTGTAAGTGTG chr7:104932901-104933401 - 50 7.18e-08 TGCATGTGCA TGTGTGCGTGTATATG CCTGTGTGTA chr12:580706-581206 + 1 1.03e-07 . tgtgtctgtatgtttg tgtgtgtgtg chr16:11171687-11172187 - 12 1.25e-07 TGTACTGGTG TGTGTGACTATGTATG CACATTTGTA chr8:37785267-37785767 - 1 1.54e-07 TGTGCATGTT TTTGTGTGTATATATG chr16:75233826-75234326 - 26 1.73e-07 TGTGCGTCCA CGTGTGCGTGTGTGTG CGCGCACACG chr5:10548560-10549060 + 85 1.97e-07 TGTGTCGGCA TGTGTTAGCATGTGTG chr8:28401254-28401754 + 76 2.22e-07 tgcactcggg tgtatgtgcttgtgtg cacgcgcgc chr12:5796193-5796693 - 8 2.53e-07 TAAGAGTATG AGAGTGTGTGTGTGTG CCAGAGA chr8:37513911-37514411 - 36 2.87e-07 TGTGTATCTC TGTGTCTGTGTGCATG TGTGTCTGTG chr1:21651290-21651790 - 9 3.20e-07 TGGACATTGC TGTGTTTGTGTCTAAG CACATGAT chr19:28427436-28427936 - 58 3.98e-07 ACCCACGCTG AGTGTGTGTGACTGTG CTGCATGTGT chr19:39157985-39158485 + 61 4.36e-07 tgtgcGCGCA TGTGTGAGCATGCATG TGTTGCGGGA chr6:2244842-2245342 - 45 5.84e-07 TTCTCTGGGG GCTGTGAGCGTGTGTG CCGCGCGGGA chr19:38111784-38112284 - 38 6.47e-07 GTGGACGCAT GGTGTGTGCATACGTG TGTGTGCATG chr16:57628626-57629126 + 45 9.91e-07 tgagtgtgtg agcgtgagtgtgtgag agtgtgagtg chr1:228782288-228782788 + 45 9.91e-07 gtgtgtatgg tccgggtgtgtgtgtg gtctgtatgt chr19:36772282-36772782 - 66 1.10e-06 GCGCGCCCGG AGTGGGTGTGTGTGTC CTGGACGACC chr22:27093398-27093898 - 83 1.10e-06 GT GGTGTGTGTGTATTGG GTGTGCATGT chr15:66932591-66933091 - 74 1.10e-06 TGTGAATGCA TGTGGGTGTGTGTGAC CATGTGTGTG chr22:19479939-19480439 + 54 1.22e-06 ACGTGGATGC TCTGTGTGCGTGCAAG ATCCTTCAGG chr1:223558454-223558954 + 1 2.79e-06 . gctgtgtgattgtgtg gagtgtgtgc chr18:33578952-33579452 + 28 3.06e-06 GGACTTGTGG GGCGTGTGCATGTGGG CTAGGTGGTT chrX:153382858-153383358 - 43 3.06e-06 TGGTGTATGT GGTGTGTGTGTTCAAG TGAGGTGTGT chr12:6767730-6768230 + 62 3.36e-06 CTCCTCTCTA Actgtgtctgtgcatg gctgtcggcc chr2:172098537-172099037 + 36 3.67e-06 TGTGTGTCAT TGTGTGTGCGCCTGAG AATATTTGAG chr1:29236975-29237475 + 57 3.99e-06 GCGTGTGTGG CGTGTGTGCTTTTGAG ATCCGTGTAC chr1:3321686-3322186 + 42 6.04e-06 agggcacaca tatgcgtgtatgtttg gcatgcatgt chr16:85245683-85246183 + 45 6.58e-06 tgtggggagg tgtctgcgtgtgttag ttggggagca chr19:36488778-36489278 - 32 7.16e-06 ACTGTGACAA TGTGGTTGTGACTGTG ACTGCCTCCT chr1:228781979-228782479 + 50 8.48e-06 ctgtgtgtat ggtctgagtgtgtgta gtctgtgtgt chr7:100650171-100650671 - 33 9.21e-06 CATGTGTGAC CGTGAGTGTATGTATA GTGTGAATGC chr5:140363261-140363761 - 56 1.35e-05 GCAACTCCGG GCTGTGTGCGTGTGGC CCATGGCGGT chr5:34189619-34190119 - 25 2.48e-05 ATGTCGAGTG TCCGGGTGTTTGTAGG ATGGCCTGCC chr12:6914652-6915152 + 76 2.86e-05 CATCTACGGT TCTATTTGTTTCTAAG TTGGGAGCC chr12:6778630-6779130 - 29 6.48e-05 TGTGCACGTG CGCGCGAGCATATGTG CGCATCTGCT chr17:42567142-42567642 + 3 7.36e-05 GA GGCGTGTGCGCGCGAG TCGGGGGAAC chr3:62318713-62319213 + 39 7.36e-05 CCGCGCGCCG CGCGTGCGCAAATATG GTAACGTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:37701159-37701659 1.6e-10 72_[+8]_12 chr10:122703391-12270389 7.3e-10 79_[-8]_5 chr18:63198247-63198747 8.1e-09 11_[-8]_73 chrX:118218024-118218524 1.5e-08 65_[+8]_19 chr15:70530162-70530662 2.7e-08 10_[-8]_74 chr10:46525211-46525711 3.4e-08 31_[-8]_53 chr17:82281389-82281889 4.6e-08 38_[+8]_46 chr2:234969697-234970197 5.2e-08 [-8]_84 chr7:104932901-104933401 7.2e-08 49_[-8]_35 chr12:580706-581206 1e-07 [+8]_84 chr16:11171687-11172187 1.3e-07 11_[-8]_73 chr8:37785267-37785767 1.5e-07 [-8]_84 chr16:75233826-75234326 1.7e-07 25_[-8]_59 chr5:10548560-10549060 2e-07 84_[+8] chr8:28401254-28401754 2.2e-07 75_[+8]_9 chr12:5796193-5796693 2.5e-07 7_[-8]_77 chr8:37513911-37514411 2.9e-07 35_[-8]_49 chr1:21651290-21651790 3.2e-07 8_[-8]_76 chr19:28427436-28427936 4e-07 57_[-8]_27 chr19:39157985-39158485 4.4e-07 60_[+8]_24 chr6:2244842-2245342 5.8e-07 44_[-8]_40 chr19:38111784-38112284 6.5e-07 37_[-8]_47 chr16:57628626-57629126 9.9e-07 44_[+8]_40 chr1:228782288-228782788 9.9e-07 44_[+8]_40 chr19:36772282-36772782 1.1e-06 65_[-8]_19 chr22:27093398-27093898 1.1e-06 82_[-8]_2 chr15:66932591-66933091 1.1e-06 73_[-8]_11 chr22:19479939-19480439 1.2e-06 53_[+8]_31 chr1:223558454-223558954 2.8e-06 [+8]_84 chr18:33578952-33579452 3.1e-06 27_[+8]_57 chrX:153382858-153383358 3.1e-06 42_[-8]_42 chr12:6767730-6768230 3.4e-06 61_[+8]_23 chr2:172098537-172099037 3.7e-06 35_[+8]_49 chr1:29236975-29237475 4e-06 56_[+8]_28 chr1:3321686-3322186 6e-06 41_[+8]_43 chr16:85245683-85246183 6.6e-06 44_[+8]_40 chr19:36488778-36489278 7.2e-06 31_[-8]_53 chr1:228781979-228782479 8.5e-06 49_[+8]_35 chr7:100650171-100650671 9.2e-06 32_[-8]_52 chr5:140363261-140363761 1.4e-05 55_[-8]_29 chr5:34189619-34190119 2.5e-05 24_[-8]_60 chr12:6914652-6915152 2.9e-05 75_[+8]_9 chr12:6778630-6779130 6.5e-05 28_[-8]_56 chr17:42567142-42567642 7.4e-05 2_[+8]_82 chr3:62318713-62319213 7.4e-05 38_[+8]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTRTGTGTG width=16 seqs=45 chr8:37701159-37701659 ( 73) TGTGTGTGTGTGTGTG 1 chr10:122703391-12270389 ( 80) TGTGTGTGTATATGTG 1 chr18:63198247-63198747 ( 12) TGTGTGTCTGTGTGTG 1 chrX:118218024-118218524 ( 66) TGTGTCTGTATGTGTG 1 chr15:70530162-70530662 ( 11) AGTGTGTGTTTATGTG 1 chr10:46525211-46525711 ( 32) TGTGTGTTTGTGTGTG 1 chr17:82281389-82281889 ( 39) TGTGTGTCCGTGTGTG 1 chr2:234969697-234970197 ( 1) AGTGTGTGTAAGTGTG 1 chr7:104932901-104933401 ( 50) TGTGTGCGTGTATATG 1 chr12:580706-581206 ( 1) TGTGTCTGTATGTTTG 1 chr16:11171687-11172187 ( 12) TGTGTGACTATGTATG 1 chr8:37785267-37785767 ( 1) TTTGTGTGTATATATG 1 chr16:75233826-75234326 ( 26) CGTGTGCGTGTGTGTG 1 chr5:10548560-10549060 ( 85) TGTGTTAGCATGTGTG 1 chr8:28401254-28401754 ( 76) TGTATGTGCTTGTGTG 1 chr12:5796193-5796693 ( 8) AGAGTGTGTGTGTGTG 1 chr8:37513911-37514411 ( 36) TGTGTCTGTGTGCATG 1 chr1:21651290-21651790 ( 9) TGTGTTTGTGTCTAAG 1 chr19:28427436-28427936 ( 58) AGTGTGTGTGACTGTG 1 chr19:39157985-39158485 ( 61) TGTGTGAGCATGCATG 1 chr6:2244842-2245342 ( 45) GCTGTGAGCGTGTGTG 1 chr19:38111784-38112284 ( 38) GGTGTGTGCATACGTG 1 chr16:57628626-57629126 ( 45) AGCGTGAGTGTGTGAG 1 chr1:228782288-228782788 ( 45) TCCGGGTGTGTGTGTG 1 chr19:36772282-36772782 ( 66) AGTGGGTGTGTGTGTC 1 chr22:27093398-27093898 ( 83) GGTGTGTGTGTATTGG 1 chr15:66932591-66933091 ( 74) TGTGGGTGTGTGTGAC 1 chr22:19479939-19480439 ( 54) TCTGTGTGCGTGCAAG 1 chr1:223558454-223558954 ( 1) GCTGTGTGATTGTGTG 1 chr18:33578952-33579452 ( 28) GGCGTGTGCATGTGGG 1 chrX:153382858-153383358 ( 43) GGTGTGTGTGTTCAAG 1 chr12:6767730-6768230 ( 62) ACTGTGTCTGTGCATG 1 chr2:172098537-172099037 ( 36) TGTGTGTGCGCCTGAG 1 chr1:29236975-29237475 ( 57) CGTGTGTGCTTTTGAG 1 chr1:3321686-3322186 ( 42) TATGCGTGTATGTTTG 1 chr16:85245683-85246183 ( 45) TGTCTGCGTGTGTTAG 1 chr19:36488778-36489278 ( 32) TGTGGTTGTGACTGTG 1 chr1:228781979-228782479 ( 50) GGTCTGAGTGTGTGTA 1 chr7:100650171-100650671 ( 33) CGTGAGTGTATGTATA 1 chr5:140363261-140363761 ( 56) GCTGTGTGCGTGTGGC 1 chr5:34189619-34190119 ( 25) TCCGGGTGTTTGTAGG 1 chr12:6914652-6915152 ( 76) TCTATTTGTTTCTAAG 1 chr12:6778630-6779130 ( 29) CGCGCGAGCATATGTG 1 chr17:42567142-42567642 ( 3) GGCGTGTGCGCGCGAG 1 chr3:62318713-62319213 ( 39) CGCGTGCGCAAATATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.5245 E= 7.0e-024 -35 -144 -60 143 -315 -77 136 -315 -315 -96 -1214 206 -215 -276 159 -1214 -315 -276 -144 206 -1214 -218 148 -115 -35 -177 -1214 193 -1214 -177 156 -315 -315 4 -1214 175 65 -1214 88 -57 -115 -276 -1214 213 -15 -144 114 -215 -1214 -96 -1214 209 55 -1214 104 -115 17 -1214 -177 180 -215 -218 156 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 45 E= 7.0e-024 0.155556 0.111111 0.200000 0.533333 0.022222 0.177778 0.777778 0.022222 0.022222 0.155556 0.000000 0.822222 0.044444 0.044444 0.911111 0.000000 0.022222 0.044444 0.111111 0.822222 0.000000 0.066667 0.844444 0.088889 0.155556 0.088889 0.000000 0.755556 0.000000 0.088889 0.888889 0.022222 0.022222 0.311111 0.000000 0.666667 0.311111 0.000000 0.555556 0.133333 0.088889 0.044444 0.000000 0.866667 0.177778 0.111111 0.666667 0.044444 0.000000 0.155556 0.000000 0.844444 0.288889 0.000000 0.622222 0.088889 0.222222 0.000000 0.088889 0.688889 0.044444 0.066667 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTRTGTGTG MEME-8 regular expression -------------------------------------------------------------------------------- [TG]GTGTGTG[TC][GA]TGT[GA][TA]G -------------------------------------------------------------------------------- Time 2770.26 secs. ******************************************************************************** ******************************************************************************** MOTIF WAYTTTDGGTMCTTTKWTATTT MEME-9 width = 22 sites = 9 llr = 191 E-value = 3.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 Description -------------------------------------------------------------------------------- Simplified A 381:::3::14:21::4:82:: pos.-specific C :241:2::2:38::1:::1::: probability G :::1::498:1:2::61::::: matrix T 7:48a821:91269944a18aa bits 2.3 * * ** 2.1 * * ** 1.9 * * ** * ** 1.6 * * ** * *** Relative 1.4 ** ** * * ** * *** Entropy 1.2 ** *** * * * ** ***** (30.7 bits) 0.9 ** *** *** * ********* 0.7 ****** *** *********** 0.5 ********** *********** 0.2 ********************** 0.0 ---------------------- Multilevel TACTTTGGGTACTTTGATATTT consensus ACT CA C CTA TT A sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrUn_KI270467v1:3138-36 + 40 1.52e-14 ttacaatata tattttgggtactttgatattt tatggacagt chrUn_KI270467v1:2090-25 + 4 1.52e-14 ata tattttgggtactttgatattt tatgtacagt chr4:49709150-49709650 - 51 5.05e-14 ATATAATACA TACTTTGGGTACTTTGATATTT TATGTACAGT chrUn_KI270467v1:2926-34 + 1 4.15e-13 . taatttgggtactttgatattt tatgtacagt chr19:34676967-34677467 - 2 7.61e-10 TATGCTGTTC ACCTTCAGGTCTTTTTTTTTTT T chr19:30682710-30683210 + 18 9.18e-10 AGTTCAGGCT TATTTTAGGACCAATTTTCTTT TATTTTAGGG chr1:223844996-223845496 - 17 1.96e-09 CTGGAACGGG TACCTTTGCTTTGTTTTTAATT GAATTTCGAT chr19:44261730-44262230 - 75 3.31e-09 TGTC AATTTCTTCTGCGTTTTTAATT TCATTTGCTT chr1:85707840-85708340 + 15 6.04e-09 CTGCTTCACT ACCGTTAGGTCCATCGGTATTT CCTCTGGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:3138-36 1.5e-14 39_[+9]_39 chrUn_KI270467v1:2090-25 1.5e-14 3_[+9]_75 chr4:49709150-49709650 5e-14 50_[-9]_28 chrUn_KI270467v1:2926-34 4.2e-13 [+9]_78 chr19:34676967-34677467 7.6e-10 1_[-9]_77 chr19:30682710-30683210 9.2e-10 17_[+9]_61 chr1:223844996-223845496 2e-09 16_[-9]_62 chr19:44261730-44262230 3.3e-09 74_[-9]_4 chr1:85707840-85708340 6e-09 14_[+9]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAYTTTDGGTMCTTTKWTATTT width=22 seqs=9 chrUn_KI270467v1:3138-36 ( 40) TATTTTGGGTACTTTGATATTT 1 chrUn_KI270467v1:2090-25 ( 4) TATTTTGGGTACTTTGATATTT 1 chr4:49709150-49709650 ( 51) TACTTTGGGTACTTTGATATTT 1 chrUn_KI270467v1:2926-34 ( 1) TAATTTGGGTACTTTGATATTT 1 chr19:34676967-34677467 ( 2) ACCTTCAGGTCTTTTTTTTTTT 1 chr19:30682710-30683210 ( 18) TATTTTAGGACCAATTTTCTTT 1 chr1:223844996-223845496 ( 17) TACCTTTGCTTTGTTTTTAATT 1 chr19:44261730-44262230 ( 75) AATTTCTTCTGCGTTTTTAATT 1 chr1:85707840-85708340 ( 15) ACCGTTAGGTCCATCGGTATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.2105 E= 3.2e-008 75 -982 -982 175 197 -44 -982 -982 -83 56 -982 117 -982 -144 -144 197 -982 -982 -982 234 -982 -44 -982 197 75 -982 56 17 -982 -982 155 -83 -982 -44 136 -982 -83 -982 -982 217 117 14 -144 -83 -982 136 -982 17 17 -982 -44 149 -83 -982 -982 217 -982 -144 -982 217 -982 -982 88 117 117 -982 -144 117 -982 -982 -982 234 197 -144 -982 -83 17 -982 -982 197 -982 -982 -982 234 -982 -982 -982 234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 9 E= 3.2e-008 0.333333 0.000000 0.000000 0.666667 0.777778 0.222222 0.000000 0.000000 0.111111 0.444444 0.000000 0.444444 0.000000 0.111111 0.111111 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.000000 0.777778 0.333333 0.000000 0.444444 0.222222 0.000000 0.000000 0.888889 0.111111 0.000000 0.222222 0.777778 0.000000 0.111111 0.000000 0.000000 0.888889 0.444444 0.333333 0.111111 0.111111 0.000000 0.777778 0.000000 0.222222 0.222222 0.000000 0.222222 0.555556 0.111111 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.555556 0.444444 0.444444 0.000000 0.111111 0.444444 0.000000 0.000000 0.000000 1.000000 0.777778 0.111111 0.000000 0.111111 0.222222 0.000000 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAYTTTDGGTMCTTTKWTATTT MEME-9 regular expression -------------------------------------------------------------------------------- [TA][AC][CT]TT[TC][GAT]G[GC]T[AC][CT][TAG]TT[GT][AT]TA[TA]TT -------------------------------------------------------------------------------- Time 3074.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 width = 42 sites = 4 llr = 174 E-value = 2.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 Description -------------------------------------------------------------------------------- Simplified A :a:::a:::a3::a:333:::8:::8:::a::3833:a:::8 pos.-specific C a:3aa::8a:358:38:::5a:3aa:38a:5a8::88::383 probability G ::::::3::::3:::::8:::3::::::::::::::::38:: matrix T ::8:::83::533:8:8:a5::8::383::5::38:3:8:3: bits 2.3 * * * * * * * 2.1 * * * * * * * 1.9 * * * * * * * 1.6 ** *** ** * * * * *** ** * ** * Relative 1.4 ******* ** ** * * ******* ** * ** ** * Entropy 1.2 ********** ******* ********** ******** ** (62.7 bits) 0.9 ********** ****************************** 0.7 *********** ****************************** 0.5 ****************************************** 0.2 ****************************************** 0.0 ------------------------------------------ Multilevel CATCCATCCATCCATCTGTCCATCCATCCACCCATCCATGCA consensus C GT AGT CAAA T GC TCT T ATAAT GCTC sequence CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------ chr15:69761093-69761593 + 55 7.47e-21 tccatccatc catccatccatgcatctgtccgtccacccacccatccaggca tgca chr19:34057085-34057585 - 12 1.69e-20 ATCCATCCAT CATCCATCCATCCATCAATTCATCCATCCATCATTCCATCTC CCATCTATCC chr19:38800818-38801318 - 44 3.54e-20 TCTCTCCAAA CATCCAGTCAACCATATGTTCACCCATTCATCCAAACATGCA ACTATTCATC chr19:30067614-30068114 + 58 4.50e-20 tccctccatt cacccatccacttacctgtccatccttccacccatctatgca c -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:69761093-69761593 7.5e-21 54_[+10]_4 chr19:34057085-34057585 1.7e-20 11_[-10]_47 chr19:38800818-38801318 3.5e-20 43_[-10]_15 chr19:30067614-30068114 4.5e-20 57_[+10]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA width=42 seqs=4 chr15:69761093-69761593 ( 55) CATCCATCCATGCATCTGTCCGTCCACCCACCCATCCAGGCA 1 chr19:34057085-34057585 ( 12) CATCCATCCATCCATCAATTCATCCATCCATCATTCCATCTC 1 chr19:38800818-38801318 ( 44) CATCCAGTCAACCATATGTTCACCCATTCATCCAAACATGCA 1 chr19:30067614-30068114 ( 58) CACCCATCCACTTACCTGTCCATCCTTCCACCCATCTATGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 35400 bayes= 13.1113 E= 2.9e-002 -865 172 -865 -865 234 -865 -865 -865 -865 -27 -865 192 -865 172 -865 -865 -865 172 -865 -865 234 -865 -865 -865 -865 -865 -27 192 -865 131 -865 34 -865 172 -865 -865 234 -865 -865 -865 34 -27 -865 134 -865 72 -27 34 -865 131 -865 34 234 -865 -865 -865 -865 -27 -865 192 34 131 -865 -865 34 -865 -865 192 34 -865 131 -865 -865 -865 -865 234 -865 72 -865 134 -865 172 -865 -865 192 -865 -27 -865 -865 -27 -865 192 -865 172 -865 -865 -865 172 -865 -865 192 -865 -865 34 -865 -27 -865 192 -865 131 -865 34 -865 172 -865 -865 234 -865 -865 -865 -865 72 -865 134 -865 172 -865 -865 34 131 -865 -865 192 -865 -865 34 34 -865 -865 192 34 131 -865 -865 -865 131 -865 34 234 -865 -865 -865 -865 -865 -27 192 -865 -27 131 -865 -865 131 -865 34 192 -27 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 4 E= 2.9e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.000000 0.500000 0.000000 0.500000 0.250000 0.250000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.250000 0.000000 0.000000 0.750000 0.250000 0.750000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.000000 0.250000 0.750000 0.250000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATCCAHBCATCTGTYCATCCATCCAYCCATCCATGCA MEME-10 regular expression -------------------------------------------------------------------------------- CA[TC]CCA[TG][CT]CA[TAC][CGT][CT]A[TC][CA][TA][GA]T[CT]C[AG][TC]CC[AT][TC][CT]CA[CT]C[CA][AT][TA][CA][CT]A[TG][GC][CT][AC] -------------------------------------------------------------------------------- Time 3381.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:27800315-27800815 9.60e-01 100 chr21:31557556-31558056 7.11e-01 100 chr20:62386422-62386922 4.86e-01 100 chr8:142816933-142817433 1.11e-17 9_[-5(7.38e-06)]_1_[+2(7.75e-10)]_4_\ [-1(5.33e-11)]_20 chr16:25111858-25112358 4.91e-01 100 chr5:1801231-1801731 9.53e-01 100 chr16:75266060-75266560 9.74e-01 100 chr6:31827688-31828188 8.69e-01 100 chr6:31403577-31404077 8.78e-01 100 chr1:6486219-6486719 1.45e-01 100 chr12:52372872-52373372 1.77e-05 49_[+6(5.26e-10)]_20 chr6:32972727-32973227 7.45e-01 100 chr1:211578077-211578577 9.83e-01 100 chr22:21937933-21938433 9.92e-01 100 chr18:63366597-63367097 8.53e-01 100 chr7:100650171-100650671 1.48e-18 3_[+2(3.73e-10)]_7_[-8(9.21e-06)]_2_\ [-1(8.35e-11)]_[+2(3.41e-07)]_6 chr4:4541812-4542312 2.68e-01 100 chr1:16545745-16546245 5.11e-01 100 chr3:12795955-12796455 2.74e-01 100 chr19:29942641-29943141 1.13e-01 100 chr5:180810214-180810714 4.43e-01 7_[-7(1.45e-05)]_63 chr6:42960854-42961354 9.79e-01 100 chr15:66932591-66933091 8.81e-18 3_[-1(1.74e-09)]_2_[+2(1.95e-06)]_\ [+2(4.52e-11)]_6_[-1(1.73e-07)]_1 chr12:109879794-10988029 2.29e-04 38_[-7(2.67e-06)]_32 chr1:225423318-225423818 3.36e-02 14_[+7(5.46e-05)]_56 chr6:27133074-27133574 1.78e-01 100 chr12:5865357-5865857 2.38e-05 4_[-1(2.55e-05)]_10_[-1(8.53e-06)]_\ 10_[-1(1.06e-05)]_10 chr14:100472145-10047264 2.97e-01 100 chr17:31008667-31009167 1.75e-03 29_[-7(1.11e-06)]_41 chr10:102133109-10213360 6.99e-01 100 chr10:13587859-13588359 9.86e-01 100 chr17:47280346-47280846 8.66e-18 24_[-6(3.95e-12)]_[-4(6.57e-19)]_4 chr1:11736190-11736690 8.72e-01 100 chr11:119094951-11909545 9.21e-01 100 chr5:856472-856972 1.73e-06 26_[-5(6.92e-07)]_5_[-5(5.26e-07)]_\ 3_[-5(4.79e-07)] chr1:44842732-44843232 8.27e-01 100 chr18:33577680-33578180 5.23e-07 5_[+1(7.16e-08)]_73 chr16:181176-181676 9.01e-01 100 chr17:74972986-74973486 8.65e-01 100 chr1:228109594-228110094 5.80e-01 100 chr17:45293510-45294010 4.85e-01 13_[-6(5.58e-05)]_56 chr16:323566-324066 5.85e-30 10_[-1(3.49e-14)]_[-1(6.22e-07)]_46 chr16:75148382-75148882 9.95e-01 100 chr19:10416569-10417069 3.34e-01 100 chr12:57220655-57221155 4.55e-03 6_[+7(3.19e-05)]_20_[+7(1.01e-06)]_\ 14 chr18:2656035-2656535 2.70e-05 [+1(8.53e-06)]_16_[-10(2.61e-05)]_\ 20 chr10:1056978-1057478 9.36e-02 62_[-7(1.17e-05)]_8 chr4:1514078-1514578 3.00e-17 [+5(3.61e-07)]_19_[+3(6.25e-19)]_16 chr1:224013060-224013560 1.22e-03 22_[-7(3.16e-06)]_2_[+6(8.17e-05)]_\ 15 chr16:2182127-2182627 1.80e-04 72_[-5(3.33e-06)]_6 chr19:37654784-37655284 7.34e-02 100 chr17:81531588-81532088 2.75e-18 6_[+3(5.96e-22)]_2_[+3(4.38e-18)]_6 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18_[+4(2.31e-21)]_[+6(6.79e-15)]_10 chr1:155051574-155052074 9.99e-01 100 chr1:45303906-45304406 9.02e-01 100 chr18:50878489-50878989 3.48e-02 1_[+7(5.68e-07)]_69 chr1:223844996-223845496 2.39e-05 16_[-9(1.96e-09)]_32_[-9(2.47e-05)]_\ 8 chr5:140363261-140363761 2.89e-01 55_[-8(1.35e-05)]_29 chr1:241848089-241848589 2.94e-01 100 chr1:155017421-155017921 9.08e-01 100 chr5:1929088-1929588 3.30e-12 32_[+5(1.26e-09)]_9_[+5(5.31e-05)]_\ 15 chr1:40783172-40783672 2.28e-02 34_[-1(3.74e-05)]_44 chr1:223558454-223558954 2.23e-13 3_[+5(1.17e-06)]_18_[+1(8.79e-07)]_\ 5_[+5(2.10e-08)]_8 chr7:101363620-101364120 8.25e-01 100 chr5:34179871-34180371 4.49e-01 100 chr14:22982628-22983128 6.25e-01 100 chr16:86224535-86225035 3.77e-13 5_[+3(7.32e-12)]_3_[+5(1.26e-08)]_\ 27 chr21:25607192-25607692 5.51e-01 100 chr1:228781979-228782479 3.34e-20 15_[+1(5.33e-11)]_12_[+8(8.48e-06)]_\ 4_[+5(9.54e-08)]_9 chr1:229148447-229148947 4.02e-01 100 chr10:17229267-17229767 9.42e-02 100 chr19:13153041-13153541 9.47e-01 100 chr12:12266963-12267463 8.48e-01 100 chr19:38196222-38196722 7.00e-03 100 chr12:6914652-6915152 5.11e-06 8_[+7(3.72e-06)]_37_[+8(2.86e-05)]_\ 9 chr16:87383801-87384301 8.21e-01 26_[+6(7.84e-05)]_43 chr19:34999371-34999871 8.59e-01 100 chr12:130764505-13076500 1.58e-05 23_[+5(1.11e-08)]_55 chr12:6829010-6829510 8.48e-18 61_[+1(1.30e-11)]_17 chr6:3227056-3227556 1.08e-01 19_[-7(3.61e-05)]_51 chr5:109409253-109409753 2.67e-01 100 chr17:76671125-76671625 3.34e-23 69_[+1(3.49e-14)]_9 chr17:45148457-45148957 4.97e-02 9_[-7(8.06e-05)]_61 chr12:580706-581206 2.64e-22 [+8(1.03e-07)]_2_[-2(4.42e-12)]_8_\ [+1(1.32e-12)]_8_[+1(4.74e-06)] chr1:93078929-93079429 3.29e-01 100 chr15:74889935-74890435 7.49e-01 100 chr16:58392289-58392789 3.17e-02 15_[+7(2.67e-06)]_55 chr1:29236975-29237475 1.07e-04 33_[+1(8.53e-06)]_1_[+8(3.99e-06)]_\ 3_[+1(3.23e-06)]_3 chr5:179678142-179678642 4.07e-02 100 chr12:570479-570979 2.82e-01 100 chr17:74872471-74872971 3.34e-01 100 chr21:32392464-32392964 8.62e-01 100 chr19:36772282-36772782 1.78e-04 65_[-8(1.10e-06)]_19 chr1:182391385-182391885 9.37e-01 100 chr16:22297257-22297757 1.00e+00 100 chr1:228458210-228458710 8.63e-01 100 chr4:189234913-189235413 2.73e-07 21_[+5(2.44e-07)]_15_[+1(3.51e-05)]_\ 20 chr17:81253420-81253920 2.83e-21 10_[-3(1.51e-21)]_2_[-3(6.97e-16)]_\ 2 chr7:129054502-129055002 2.11e-02 100 chr15:65869675-65870175 3.31e-02 100 chr19:38800818-38801318 7.02e-18 10_[-7(1.01e-06)]_3_[-10(3.54e-20)]_\ 15 chr19:39397430-39397930 2.89e-01 100 chr22:50675322-50675822 2.32e-03 7_[+8(1.08e-05)]_77 chr16:30874970-30875470 1.00e+00 100 chr17:17693838-17694338 1.26e-02 9_[+7(1.17e-05)]_61 chr19:33778321-33778821 9.36e-13 43_[+2(4.46e-07)]_4_[-1(1.98e-09)]_\ 9 chr1:31413654-31414154 6.13e-05 12_[+7(4.66e-07)]_58 chr8:27310676-27311176 9.16e-01 100 chr16:57628626-57629126 1.24e-17 14_[-2(1.04e-06)]_[+1(4.63e-09)]_8_\ [+1(4.12e-10)]_12 chr1:229625052-229625552 3.66e-01 100 chr1:244451479-244451979 1.08e-01 100 chr15:75368347-75368847 9.93e-01 100 chr19:35557339-35557839 1.45e-02 20_[+3(6.70e-05)]_37 chr16:2459405-2459905 2.84e-05 58_[+7(3.83e-05)]_12 chr1:3321686-3322186 5.82e-10 6_[+1(3.64e-07)]_13_[+8(6.04e-06)]_\ 7_[-2(5.30e-07)]_14 chr17:42567142-42567642 3.20e-02 2_[+8(7.36e-05)]_82 chr1:26788218-26788718 6.49e-02 77_[-5(5.99e-06)]_1 chr8:37513911-37514411 6.82e-19 13_[-1(1.30e-11)]_[-8(2.87e-07)]_8_\ [+2(1.00e-11)]_2_[-8(1.10e-06)]_1 chr5:176591612-176592112 5.86e-20 19_[+5(2.01e-09)]_[+3(5.94e-21)]_16 chr14:19374373-19374873 2.41e-08 2_[+1(1.64e-08)]_37_[-2(9.55e-07)]_\ 17 chr10:88880122-88880622 9.29e-01 100 chr21:36069965-36070465 7.20e-01 100 chr19:40349663-40350163 8.06e-06 2_[+6(1.42e-13)]_67 chr17:58006925-58007425 9.65e-01 100 chr17:76736824-76737324 1.00e+00 100 chr19:39823962-39824462 3.58e-02 100 chr18:49019533-49020033 4.10e-18 19_[+5(1.09e-12)]_7_[+1(2.27e-08)]_\ 8_[-2(3.97e-08)] chr1:8026665-8027165 1.58e-03 3_[+1(4.39e-06)]_75 chr9:133030738-133031238 8.77e-01 100 chr18:63198247-63198747 6.81e-16 11_[-1(2.37e-10)]_8_[+2(1.25e-10)]_\ 2_[-1(3.95e-11)]_13 chr19:36488778-36489278 1.31e-04 31_[-8(7.16e-06)]_31_[+2(4.46e-07)] chr12:5796193-5796693 5.50e-22 7_[-1(4.76e-08)]_10_[-1(1.81e-11)]_\ 12_[-1(2.37e-10)]_5 chr1:163321554-163322054 9.84e-01 100 chr10:93209012-93209512 7.93e-02 40_[+3(2.46e-05)]_17 chr19:37371322-37371822 2.88e-12 16_[+8(1.98e-05)]_[-2(5.64e-09)]_\ [-2(6.65e-05)]_24 chr1:225653510-225654010 8.95e-01 100 chr19:30435112-30435612 3.06e-18 13_[+3(2.58e-22)]_20_[+5(2.10e-08)]_\ 2 chr17:40140253-40140753 3.97e-01 100 chr12:57111934-57112434 3.46e-27 13_[-1(3.49e-14)]_4_[-1(2.01e-06)]_\ 10_[-5(1.64e-06)]_7 chr1:92832044-92832544 1.83e-01 100 chr19:1383486-1383986 2.66e-01 100 chr21:36135193-36135693 9.03e-01 100 chr1:236097031-236097531 9.75e-01 100 chr18:50281096-50281596 8.42e-01 100 chr19:33273953-33274453 3.39e-25 47_[+1(3.49e-14)]_4_[-2(1.72e-10)]_\ 5 chr16:1271720-1272220 7.85e-01 100 chr12:2255729-2256229 1.64e-01 100 chr8:28401254-28401754 9.30e-11 8_[+1(1.17e-08)]_11_[-2(2.85e-07)]_\ 12_[+8(2.22e-07)]_9 chr19:36214000-36214500 3.02e-07 1_[+2(1.48e-07)]_20_[-1(1.18e-07)]_\ 35 chr4:49709150-49709650 8.90e-10 8_[-9(5.05e-14)]_20_[-9(5.05e-14)]_\ 3_[-5(8.46e-06)]_3 chrUn_GL000216v2:243-743 7.68e-02 62_[+7(1.45e-05)]_8 chr19:2524521-2525021 5.53e-09 9_[+1(3.48e-08)]_14_[+1(2.52e-07)]_\ 6_[-2(7.41e-08)]_5 chr19:43640045-43640545 1.31e-02 42_[-7(1.26e-05)]_28 chr17:78558266-78558766 3.78e-02 64_[+6(4.60e-05)]_5 chrUn_KI270467v1:2090-25 6.62e-10 3_[+9(1.52e-14)]_17_[+9(4.33e-07)]_\ [+2(1.34e-05)]_14 chrUn_KI270467v1:3138-36 1.37e-10 14_[+5(6.89e-06)]_3_[+9(1.52e-14)]_\ [+2(9.78e-06)]_17 chrUn_KI270467v1:2926-34 9.25e-11 [+9(4.15e-13)]_20_[+9(1.12e-07)]_36 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************