# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 TTATTTATTTATTTATTTATTT MEME-1 TTATTTATTTATTTATTTATTT 8.3e-444 1.1e-446 -1026.86 0.0 39 479 460 495 0.08142 4.6e-449 239 1 ATAAATAAATAAATAA MEME-2 ATAAATAAATAAATAA 7.2e-433 9.6e-436 -1001.66 0.0 43 485 464 497 0.08866 4.0e-438 242 1 GYGAGACTCYRTCTCA MEME-3 GYGAGACTCYRTCTCA 5.3e-098 7.1e-101 -230.60 0.0 93 485 306 474 0.19175 2.9e-103 242 1 AWAAATAAAWAA MEME-4 AWAAATAAAWAA 5.0e-371 6.7e-374 -859.26 0.0 45 489 465 560 0.09202 2.8e-376 244 1 CTGGGYGACAGA MEME-5 CTGGGYGACAGA 3.3e-106 4.3e-109 -249.51 0.0 123 489 340 448 0.25153 1.8e-111 244 1 GCYRGGYRYGGTGGCKCAYGCC MEME-6 GCYRGGYRYGGTGGCKCAYGCC 7.4e-011 9.9e-014 -29.94 0.0 367 479 403 441 0.76618 4.1e-016 239 1 GGYGACAGA MEME-7 GGYGACAGA 1.6e-074 2.2e-077 -176.53 0.0 120 492 277 400 0.24390 8.8e-080 245 1 GACTCYGTCTCAAAAW MEME-8 GACTCYGTCTCAAAAW 5.6e-165 7.5e-168 -384.82 0.0 87 485 332 410 0.17938 3.1e-170 242 1 TTATTTATT MEME-9 TTATTTATT 3.7e-363 4.9e-366 -841.16 0.0 50 492 465 545 0.10163 2.0e-368 245 1 RGCCRGGCRYGGTGGC MEME-10 RGCCRGGCRYGGTGGC 5.6e-012 7.5e-015 -32.52 0.0 375 485 421 457 0.77320 3.1e-017 242 2 TAAATAAA DREME-1 TAAATAAA 1.7e-401 2.2e-404 -929.44 0.0 51 493 467 503 0.10345 9.1e-407 246 2 DGAGWC DREME-2 TGAGWC 2.7e-037 3.7e-040 -90.81 0.0 89 495 236 546 0.17980 1.5e-042 247 2 CTCTGY DREME-3 CTCTGT 1.5e-053 2.0e-056 -128.25 0.0 113 495 270 469 0.22828 8.1e-059 247 2 CTGKS DREME-4 CTGKS 4.1e0000 5.4e-003 -5.22 0.0 356 496 473 598 0.71774 2.2e-005 247 2 ATCTCAAA DREME-5 ATCTCAAA 5.9e-037 7.8e-040 -90.05 0.0 81 493 77 97 0.16430 3.2e-042 246 2 GAGCVA DREME-6 GAGCVA 4.1e-016 5.5e-019 -42.05 0.0 183 495 257 432 0.36970 2.2e-021 247 2 CTCCAKC DREME-7 CTCCAKC 1.1e-067 1.4e-070 -160.84 0.0 144 494 282 382 0.29150 5.7e-073 246 2 CACHC DREME-8 CACHC 3.1e-023 4.2e-026 -58.44 0.0 148 496 306 593 0.29839 1.7e-028 247 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 1.0e-100 1.4e-103 -236.85 0.0 60 490 291 594 0.12245 5.6e-106 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 9.1e-028 1.2e-030 -68.89 0.0 66 492 182 544 0.13415 4.9e-033 245 3 M0216_1.02 (NHLH2)_(Mus_musculus)_(DBD_1.00) NGCAGCTGYN 1.7e-001 2.3e-004 -8.37 0.0 359 491 479 587 0.73116 9.5e-007 245 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 1.8e-037 2.4e-040 -91.23 0.0 148 490 332 574 0.30204 9.9e-043 244 3 M0422_1.02 (ZIC5)_(Mus_musculus)_(DBD_0.99) SYRGGGGGTM 4.1e0000 5.4e-003 -5.22 0.0 237 491 339 597 0.48269 2.2e-005 245 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNN 1.7e-006 2.3e-009 -19.89 0.0 123 491 224 596 0.25051 9.4e-012 245 3 M0431_1.02 (OSR1)_(Mus_musculus)_(DBD_1.00) MCRGTAGCN 3.6e0000 4.8e-003 -5.35 0.0 328 492 447 600 0.66667 1.9e-005 245 3 M0432_1.02 (ZFP161)_(Mus_musculus)_(DBD_1.00) NNCGYGCHH 1.9e0000 2.5e-003 -6.00 0.0 360 492 373 456 0.73171 1.0e-005 245 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 4.1e-134 5.4e-137 -313.76 0.0 63 491 336 599 0.12831 2.2e-139 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 6.3e-038 8.4e-041 -92.28 0.0 200 492 411 599 0.40650 3.4e-043 245 3 M0610_1.02 TET1 NNYRCGYWN 1.1e-002 1.5e-005 -11.11 0.0 356 492 395 477 0.72358 6.1e-008 245 3 M0629_1.02 DMRT3 MATGTATCAAN 8.7e0000 1.2e-002 -4.46 0.0 90 490 128 500 0.18367 4.8e-005 244 3 M0633_1.02 DMRT2 KAATKTATWN 1.7e-205 2.2e-208 -478.13 0.0 59 491 394 595 0.12016 9.2e-211 245 3 M0718_1.02 FOXK1 DNRTMAACAH 9.2e-025 1.2e-027 -61.97 0.0 57 491 172 598 0.11609 5.0e-030 245 3 M0719_1.02 FOXG1 RTAAACAW 4.1e-057 5.5e-060 -136.46 0.0 47 493 206 596 0.09533 2.2e-062 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 5.7e-125 7.6e-128 -292.70 0.0 49 489 294 598 0.10020 3.1e-130 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 2.6e-031 3.5e-034 -77.04 0.0 51 493 173 598 0.10345 1.4e-036 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 5.9e-275 7.8e-278 -638.06 0.0 47 491 420 598 0.09572 3.2e-280 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 3.2e-211 4.2e-214 -491.31 0.0 69 491 423 600 0.14053 1.7e-216 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 6.8e0000 9.1e-003 -4.70 0.0 122 492 173 532 0.24797 3.7e-005 245 3 M0893_1.02 ZFHX2 NNTAATTANN 5.6e0000 7.4e-003 -4.91 0.0 395 491 464 532 0.80448 3.0e-005 245 3 M0896_1.02 VENTX TTAATTAG 3.0e-048 4.0e-051 -116.04 0.0 43 493 184 597 0.08722 1.6e-053 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 1.4e-002 1.9e-005 -10.88 0.0 135 491 205 538 0.27495 7.7e-008 245 3 M0900_1.02 SHOX HTAATTRV 7.7e0000 1.0e-002 -4.58 0.0 401 493 505 577 0.81339 4.2e-005 246 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 4.2e-008 5.6e-011 -23.60 0.0 65 491 128 504 0.13238 2.3e-013 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 3.6e0000 4.8e-003 -5.33 0.0 408 492 497 557 0.82927 2.0e-005 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.3e-001 1.7e-004 -8.67 0.0 379 493 458 537 0.76876 7.0e-007 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 5.0e-002 6.7e-005 -9.62 0.0 390 494 513 589 0.78947 2.7e-007 246 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 2.3e0000 3.1e-003 -5.79 0.0 392 492 490 566 0.79675 1.3e-005 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 1.5e-002 1.9e-005 -10.85 0.0 298 492 424 598 0.60569 8.0e-008 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 9.0e-004 1.2e-006 -13.63 0.0 71 491 123 509 0.14460 4.9e-009 245 3 M1528_1.02 (RFX6)_(Mus_musculus)_(DBD_0.66) NCNTRGYWAC 2.2e-021 2.9e-024 -54.20 0.0 125 491 274 600 0.25458 1.2e-026 245 3 M1545_1.02 GMEB1 NNNRCGTNN 6.9e0000 9.2e-003 -4.69 0.0 372 492 381 457 0.75610 3.8e-005 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 2.4e-110 3.2e-113 -259.03 0.0 48 490 272 584 0.09796 1.3e-115 244 3 M1583_1.02 (BBX)_(Mus_musculus)_(DBD_0.99) TTCATTGA 3.1e-002 4.2e-005 -10.09 0.0 77 493 62 208 0.15619 1.7e-007 246 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 2.0e0000 2.6e-003 -5.93 0.0 415 491 541 597 0.84521 1.1e-005 245 3 M1605_1.02 (SOX1)_(Mus_musculus)_(DBD_1.00) ATTSWHNNNN 1.2e-002 1.6e-005 -11.04 0.0 285 491 397 577 0.58045 6.6e-008 245 3 M1668_1.02 PRKRIR NYCVNVSKRNNN 1.8e-023 2.4e-026 -58.99 0.0 137 489 295 595 0.28016 9.8e-029 244 3 M1882_1.02 IRF1 AAANHGAAAGTGAAASYRRRN 1.7e-004 2.2e-007 -15.33 0.0 92 480 149 486 0.19167 9.2e-010 239 3 M1884_1.02 MEF2A DKCTAAAAATAGMHH 1.4e-010 1.9e-013 -29.30 0.0 64 486 150 585 0.13169 7.7e-016 242 3 M1906_1.02 SP1 RGGGGMGGGGC 3.0e-005 4.0e-008 -17.05 0.0 276 490 393 568 0.56327 1.6e-010 244 3 M1915_1.02 (ZNF76)_(Xenopus_laevis)_(DBD_0.84) KCRWKGMATBMTGGGARDTV 9.9e-001 1.3e-003 -6.63 0.0 347 481 429 533 0.72141 5.5e-006 240 3 M1963_1.02 (ZFY)_(Mus_musculus)_(DBD_0.97) SSSGSCBVGGCCTS 6.4e-007 8.5e-010 -20.88 0.0 289 487 417 569 0.59343 3.5e-012 243 3 M2267_1.02 CDX2 TTTTATKRCHB 8.9e-001 1.2e-003 -6.73 0.0 74 490 118 522 0.15102 4.9e-006 244 3 M2273_1.02 E2F6 RGGCGGGARRV 5.2e-004 6.9e-007 -14.19 0.0 282 490 406 585 0.57551 2.8e-009 244 3 M2278_1.02 FOS DVTGASTCATB 3.0e-005 3.9e-008 -17.05 0.0 288 490 382 531 0.58776 1.6e-010 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 2.8e-154 3.7e-157 -360.19 0.0 60 486 351 596 0.12346 1.5e-159 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 1.2e-068 1.6e-071 -163.04 0.0 66 488 250 550 0.13525 6.4e-074 243 3 M2292_1.02 JUND DRTGASTCATS 1.3e-001 1.8e-004 -8.63 0.0 316 490 384 516 0.64490 7.3e-007 244 3 M2303_1.02 NR2C2 TGACCTYTGACCYCB 7.0e-003 9.3e-006 -11.58 0.0 220 486 319 563 0.45267 3.9e-008 242 3 M2307_1.02 PRDM1 DRAAAGTGAAAGTRA 1.0e0000 1.4e-003 -6.60 0.0 98 486 152 540 0.20165 5.6e-006 242 3 M2314_1.02 SP2 SSVVRGRGGCGGGRC 1.2e-005 1.6e-008 -17.95 0.0 276 486 395 564 0.56790 6.6e-011 242 3 M2323_1.02 ZBTB33 SARVTCTCGCGAGAV 8.2e0000 1.1e-002 -4.51 0.0 290 486 251 359 0.59671 4.6e-005 242 3 M2385_1.02 FOXP2 RWGTAAACAVR 1.6e-113 2.1e-116 -266.35 0.0 48 490 279 595 0.09796 8.7e-119 244 3 M2387_1.02 SREBF1 RTGGGGTGAB 3.0e-003 4.0e-006 -12.43 0.0 233 491 340 575 0.47454 1.6e-008 245 3 M2388_1.02 SREBF2 RTGGGGTGAY 1.9e-004 2.5e-007 -15.21 0.0 299 491 421 577 0.60896 1.0e-009 245 3 M2392_1.02 RFX2 GTYDCCATGGCAACVRNNN 1.2e-002 1.6e-005 -11.05 0.0 124 482 186 511 0.25726 6.6e-008 240 3 M4344_1.02 (ARID2)_(Saccharomyces_cerevisiae)_(DBD_0.26) SGTTGCYA 5.0e-003 6.6e-006 -11.92 0.0 189 493 282 567 0.38337 2.7e-008 246 3 M4452_1.02 BATF TYYYRWWATGASTCA 2.9e-011 3.9e-014 -30.88 0.0 80 486 166 541 0.16461 1.6e-016 242 3 M4459_1.02 EGR1 SBGCGKGGGCGGVRGSGSGG 3.1e-003 4.1e-006 -12.41 0.0 357 481 434 514 0.74220 1.7e-008 240 3 M4467_1.02 MEF2C DDKCYAAAAATAGMH 2.0e-033 2.6e-036 -81.92 0.0 70 486 212 589 0.14403 1.1e-038 242 3 M4471_1.02 PAX5 BCAGYSRAGCGTGAC 2.0e-008 2.7e-011 -24.34 0.0 184 486 313 592 0.37860 1.1e-013 242 3 M4476_1.02 RFX5 TCABYWGTTGCYRGG 1.7e-005 2.2e-008 -17.62 0.0 314 486 451 586 0.64609 9.2e-011 242 3 M4509_1.02 POU5F1 ATYTGCATRACAAWGRV 1.8e-002 2.4e-005 -10.63 0.0 96 484 142 474 0.19835 1.0e-007 241 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 5.9e-014 7.9e-017 -37.08 0.0 294 486 441 565 0.60494 3.2e-019 242 3 M4537_1.02 E2F4 GGCGGGAARWTBVRR 1.8e-001 2.5e-004 -8.31 0.0 320 486 421 559 0.65844 1.0e-006 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 6.0e-031 7.9e-034 -76.22 0.0 154 484 228 354 0.31818 3.3e-036 241 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 8.3e-009 1.1e-011 -25.23 0.0 321 487 440 547 0.65914 4.5e-014 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 1.5e-134 2.0e-137 -314.74 0.0 60 486 332 599 0.12346 8.4e-140 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 4.2e-016 5.6e-019 -42.03 0.0 290 486 408 514 0.59671 2.3e-021 242 3 M4604_1.02 ZNF263 RRGGAGGASGVVGRGGRGGRG 6.5e-006 8.7e-009 -18.56 0.0 286 480 410 563 0.59583 3.6e-011 239 3 M4612_1.02 CTCFL CCRSCAGGGGGCGCY 2.9e-006 3.8e-009 -19.38 0.0 236 486 307 481 0.48560 1.6e-011 242 3 M4619_1.02 FOSL1 BGGTGASTCAT 1.6e-006 2.1e-009 -20.00 0.0 322 490 414 523 0.65714 8.5e-012 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 1.8e-004 2.4e-007 -15.23 0.0 314 486 413 538 0.64609 1.0e-009 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 9.7e-010 1.3e-012 -27.38 0.0 276 484 365 494 0.57025 5.3e-015 241 3 M4636_1.02 THAP1 YTGCCCDBANYMAAGATGGCG 4.1e-001 5.4e-004 -7.52 0.0 202 480 157 281 0.42083 2.3e-006 239 3 M4681_1.02 BACH2 TGCTGAGTCA 1.3e-011 1.8e-014 -31.66 0.0 289 491 394 517 0.58859 7.3e-017 245 3 M4692_1.02 SIX5 ACTACAAYTC 9.3e-004 1.2e-006 -13.60 0.0 89 491 144 500 0.18126 5.1e-009 245 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 1.7e-013 2.3e-016 -36.00 0.0 172 486 311 584 0.35391 9.6e-019 242 3 M4708_1.02 TBP TATGCAAATA 3.9e-004 5.2e-007 -14.48 0.0 433 491 563 591 0.88187 2.1e-009 245 3 M5284_1.02 ALX3 BNTAATTRGY 8.6e-003 1.1e-005 -11.38 0.0 403 491 511 566 0.82077 4.7e-008 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 1.0e-270 1.3e-273 -628.31 0.0 48 488 418 590 0.09836 5.6e-276 243 3 M5291_1.02 ARX YTAATTNRATTAN 1.2e-311 1.7e-314 -722.51 0.0 48 488 445 586 0.09836 6.8e-317 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 1.9e-007 2.5e-010 -22.09 0.0 59 491 119 511 0.12016 1.0e-012 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 1.6e-012 2.1e-015 -33.77 0.0 72 484 133 424 0.14876 8.9e-018 241 3 M5322_1.02 CPEB1 TTTTTATT 9.6e-060 1.3e-062 -142.52 0.0 65 493 247 598 0.13185 5.2e-065 246 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 3.1e-364 4.1e-367 -843.64 0.0 45 483 440 510 0.09317 1.7e-369 241 3 M5339_1.02 DLX1 NNTAATTRNN 4.0e-004 5.3e-007 -14.45 0.0 403 491 529 582 0.82077 2.2e-009 245 3 M5343_1.02 DLX5 NTAATTRN 8.4e0000 1.1e-002 -4.49 0.0 401 493 506 579 0.81339 4.6e-005 246 3 M5348_1.02 DRGX NTAATYHAATTAN 3.6e-203 4.8e-206 -472.77 0.0 44 488 352 587 0.09016 2.0e-208 243 3 M5377_1.02 ELF4 AACCCGGAAGTR 1.3e-002 1.7e-005 -10.96 0.0 281 489 303 433 0.57464 7.1e-008 244 3 M5388_1.02 EMX2 NYTAATTAVB 1.5e0000 2.0e-003 -6.22 0.0 403 491 490 551 0.82077 8.1e-006 245 3 M5390_1.02 EN1 VBTAATTRSB 8.0e-002 1.1e-004 -9.15 0.0 395 491 501 567 0.80448 4.3e-007 245 3 M5414_1.02 ESX1 DNTAATTRRN 6.3e0000 8.3e-003 -4.79 0.0 401 491 505 574 0.81670 3.4e-005 245 3 M5425_1.02 ETV6 CCGGAASCGGAAGTR 8.0e-004 1.1e-006 -13.75 0.0 284 486 298 412 0.58436 4.4e-009 242 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 5.8e-006 7.7e-009 -18.68 0.0 121 487 169 431 0.24846 3.2e-011 243 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 2.2e-018 3.0e-021 -47.26 0.0 65 487 165 555 0.13347 1.2e-023 243 3 M5446_1.02 FOXD4L2 RTAAACA 1.3e-185 1.7e-188 -432.34 0.0 48 494 350 599 0.09717 7.0e-191 246 3 M5460_1.02 FOXL1 RTAAACA 2.1e-242 2.8e-245 -563.11 0.0 48 494 398 599 0.09717 1.1e-247 246 3 M5480_1.02 GBX1 RBTAATTRGB 3.4e-002 4.5e-005 -10.00 0.0 423 491 501 537 0.86151 1.9e-007 245 3 M5481_1.02 GBX2 NYTAATTRSB 1.7e-004 2.3e-007 -15.27 0.0 403 491 517 567 0.82077 9.5e-010 245 3 M5500_1.02 GSC VYTAATCCBH 2.0e0000 2.6e-003 -5.94 0.0 387 491 497 579 0.78819 1.1e-005 245 3 M5501_1.02 GSC2 NYTAATCCBH 5.4e-001 7.2e-004 -7.24 0.0 325 491 444 593 0.66191 2.9e-006 245 3 M5504_1.02 HES5 YGGCACGTGYCR 1.8e0000 2.4e-003 -6.05 0.0 413 489 274 295 0.84458 9.7e-006 244 3 M5542_1.02 HOXB3 NYTAATKRNN 6.2e0000 8.3e-003 -4.80 0.0 405 491 509 574 0.82485 3.4e-005 245 3 M5544_1.02 HOXC10 DTTTWATKDB 2.6e-064 3.4e-067 -153.05 0.0 69 491 262 598 0.14053 1.4e-069 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 2.4e-001 3.2e-004 -8.06 0.0 78 490 111 451 0.15918 1.3e-006 244 3 M5553_1.02 HOXC13 CYAATAAAAH 8.1e-004 1.1e-006 -13.74 0.0 67 491 133 590 0.13646 4.4e-009 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 1.1e-009 1.4e-012 -27.27 0.0 95 491 156 445 0.19348 5.9e-015 245 3 M5563_1.02 HOXD8 VHWAATTADV 1.3e-007 1.8e-010 -22.46 0.0 395 491 544 598 0.80448 7.2e-013 245 3 M5583_1.02 ISL2 YTAAKTGC 2.8e-001 3.8e-004 -7.88 0.0 177 493 268 590 0.35903 1.5e-006 246 3 M5584_1.02 ISX YTAATCTAATTAR 3.7e-267 5.0e-270 -620.09 0.0 48 488 408 569 0.09836 2.1e-272 243 3 M5604_1.02 LMX1A YTAATTAA 1.1e-005 1.4e-008 -18.08 0.0 63 493 133 594 0.12779 5.7e-011 246 3 M5605_1.02 LMX1B TTAATTRN 4.5e-009 6.0e-012 -25.85 0.0 63 493 144 597 0.12779 2.4e-014 246 3 M5616_1.02 MEF2B RCTAWAAATAGM 3.2e-003 4.3e-006 -12.35 0.0 423 489 482 512 0.86503 1.8e-008 244 3 M5621_1.02 MEIS3 SCTGTCAH 4.1e-008 5.5e-011 -23.63 0.0 139 493 251 595 0.28195 2.2e-013 246 3 M5628_1.02 MGA AGGTGTGA 5.2e-001 6.9e-004 -7.28 0.0 357 493 469 581 0.72414 2.8e-006 246 3 M5631_1.02 MIXL1 NBTAATTRVN 1.3e-002 1.8e-005 -10.95 0.0 389 491 506 577 0.79226 7.2e-008 245 3 M5635_1.02 MNX1 TTTAATTRNH 1.7e-034 2.3e-037 -84.36 0.0 51 491 179 597 0.10387 9.4e-040 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 4.5e-069 6.0e-072 -163.99 0.0 53 483 230 562 0.10973 2.5e-074 241 3 M5672_1.02 NOTO NBTAATTARN 4.3e-001 5.8e-004 -7.46 0.0 387 491 489 566 0.78819 2.4e-006 245 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 3.5e-277 4.6e-280 -643.19 0.0 61 487 450 578 0.12526 1.9e-282 243 3 M5702_1.02 PAX1 DKCANTCAWGCGTGACG 3.3e0000 4.3e-003 -5.44 0.0 358 484 265 316 0.73967 1.8e-005 241 3 M5704_1.02 PAX3 TAATYRATTA 5.0e0000 6.7e-003 -5.01 0.0 71 491 59 241 0.14460 2.7e-005 245 3 M5705_1.02 PAX4 YTAATTAR 8.6e0000 1.1e-002 -4.47 0.0 403 493 492 559 0.81744 4.7e-005 246 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 4.0e-013 5.4e-016 -35.16 0.0 188 484 178 274 0.38843 2.2e-018 241 3 M5714_1.02 PHOX2A TAATYYAATTA 8.4e-171 1.1e-173 -398.23 0.0 48 490 334 589 0.09796 4.6e-176 244 3 M5715_1.02 PHOX2B TAATYYAATTA 1.2e-153 1.6e-156 -358.76 0.0 48 490 319 590 0.09796 6.4e-159 244 3 M5717_1.02 PITX1 NHTAATCCC 3.3e-001 4.4e-004 -7.73 0.0 330 492 443 584 0.67073 1.8e-006 245 3 M5720_1.02 PITX3 NHTAATCCC 1.2e-001 1.6e-004 -8.73 0.0 330 492 443 581 0.67073 6.6e-007 245 3 M5735_1.02 POU3F3 WAATTWGCATAWW 4.0e-006 5.3e-009 -19.05 0.0 66 488 120 486 0.13525 2.2e-011 243 3 M5740_1.02 POU4F1 ATGMATAATTAATG 2.9e-299 3.8e-302 -694.03 0.0 47 487 434 586 0.09651 1.6e-304 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 1.7e-294 2.3e-297 -683.05 0.0 49 485 436 583 0.10103 9.4e-300 242 3 M5746_1.02 POU6F2 WTAATKAGST 9.7e0000 1.3e-002 -4.35 0.0 379 491 475 567 0.77189 5.3e-005 245 3 M5753_1.02 PROX1 YAAGACGYCTTA 2.4e-017 3.3e-020 -44.87 0.0 97 489 137 309 0.19836 1.3e-022 244 3 M5771_1.02 RAX DYTAATTRRY 2.4e-002 3.2e-005 -10.35 0.0 403 491 519 577 0.82077 1.3e-007 245 3 M5772_1.02 RAX2 BTAATTRR 2.0e0000 2.6e-003 -5.95 0.0 377 493 481 574 0.76471 1.1e-005 246 3 M5777_1.02 RFX4 NGTWRCCATGGYWACS 5.7e-005 7.5e-008 -16.40 0.0 327 485 361 447 0.67423 3.1e-010 242 3 M5807_1.02 SHOX2 YTAATTRR 2.2e-002 3.0e-005 -10.43 0.0 419 493 531 576 0.84990 1.2e-007 246 3 M5889_1.02 TBX21 GGTGTGAHWTCACACC 4.4e-001 5.9e-004 -7.43 0.0 341 485 246 300 0.70309 2.4e-006 242 3 M5896_1.02 TBX4 AGGTGTGA 1.8e-002 2.4e-005 -10.65 0.0 357 493 481 588 0.72414 9.7e-008 246 3 M5941_1.02 UNCX NTAATYBAATTAN 2.2e-098 2.9e-101 -231.48 0.0 48 488 263 598 0.09836 1.2e-103 243 3 M5949_1.02 VSX1 YTAATTAN 2.1e-001 2.8e-004 -8.18 0.0 395 493 497 566 0.80122 1.1e-006 246 3 M5972_1.02 ZNF410 GANTATTATGGGATGKM 2.0e-002 2.6e-005 -10.55 0.0 72 484 42 124 0.14876 1.1e-007 241 3 M5974_1.02 ZNF524 GGGTTCRAGGGT 2.1e-004 2.8e-007 -15.07 0.0 251 489 303 465 0.51329 1.2e-009 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 3.2e-224 4.2e-227 -521.24 0.0 61 491 416 600 0.12424 1.7e-229 245 3 M6115_1.02 TP73 CATGYCWGRRCWTGY 1.7e-009 2.3e-012 -26.80 0.0 302 486 454 589 0.62140 9.5e-015 242 3 M6123_1.02 (ZNF281)_(Mus_musculus)_(DBD_1.00) GRGKTGGGGGAGGGG 2.0e-003 2.7e-006 -12.82 0.0 340 486 436 540 0.69959 1.1e-008 242 3 M6139_1.02 AHR KCACGCRAH 4.1e-005 5.5e-008 -16.73 0.0 374 492 499 576 0.76016 2.2e-010 245 3 M6141_1.02 ALX1 TAATBYAATTAY 2.1e-061 2.8e-064 -146.35 0.0 45 489 208 593 0.09202 1.1e-066 244 3 M6144_1.02 TFAP2B BCCCBCRGGC 3.5e-004 4.7e-007 -14.57 0.0 279 491 403 586 0.56823 1.9e-009 245 3 M6146_1.02 TFAP2D ACGNGCCBCRGGCK 1.9e-018 2.5e-021 -47.42 0.0 291 487 402 498 0.59754 1.0e-023 243 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 9.3e-286 1.2e-288 -662.93 0.0 49 479 432 584 0.10230 5.2e-291 239 3 M6150_1.02 ARNT2 GYSYSCCACGNC 1.2e0000 1.5e-003 -6.47 0.0 371 489 487 584 0.75869 6.3e-006 244 3 M6184_1.02 CUX1 RBRSNDATCGATSK 6.2e0000 8.2e-003 -4.80 0.0 333 487 384 501 0.68378 3.4e-005 243 3 M6187_1.02 DDIT3 GGGGATTGCABBB 2.1e-017 2.8e-020 -45.04 0.0 232 488 393 581 0.47541 1.1e-022 243 3 M6189_1.02 DLX3 GMTAATTRSW 3.2e-002 4.3e-005 -10.06 0.0 403 491 506 563 0.82077 1.8e-007 245 3 M6201_1.02 EGR4 GGSGGYRGGGM 8.7e-001 1.2e-003 -6.77 0.0 368 490 452 544 0.75102 4.7e-006 244 3 M6211_1.02 EOMES CGGGGATACGAAAT 4.6e-005 6.1e-008 -16.61 0.0 197 487 123 195 0.40452 2.5e-010 243 3 M6221_1.02 ETS2 VMVGGAAGTKS 8.7e-007 1.2e-009 -20.57 0.0 298 490 444 599 0.60816 4.8e-012 244 3 M6228_1.02 FOSB CTGACTCAYV 2.0e-001 2.6e-004 -8.24 0.0 279 491 393 592 0.56823 1.1e-006 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 5.9e-256 7.8e-259 -594.31 0.0 58 488 434 595 0.11885 3.2e-261 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 5.2e-114 7.0e-117 -267.46 0.0 60 486 306 588 0.12346 2.9e-119 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 7.3e-006 9.7e-009 -18.45 0.0 418 486 534 564 0.86008 4.0e-011 242 3 M6237_1.02 FOXD3 AAACAAACA 7.9e-211 1.1e-213 -490.40 0.0 46 492 367 600 0.09350 4.3e-216 245 3 M6238_1.02 FOXF1 WAAATAAACAW 1.7e-273 2.3e-276 -634.70 0.0 60 490 452 598 0.12245 9.3e-279 244 3 M6239_1.02 FOXF2 HWADGTAAACA 7.7e-219 1.0e-221 -508.84 0.0 62 490 412 594 0.12653 4.2e-224 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 1.6e-325 2.1e-328 -754.52 0.0 47 491 456 598 0.09572 8.4e-331 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 4.7e-159 6.3e-162 -371.18 0.0 54 488 339 591 0.11066 2.6e-164 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 2.9e-166 3.9e-169 -387.78 0.0 60 488 363 600 0.12295 1.6e-171 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 8.2e-185 1.1e-187 -430.50 0.0 53 485 364 597 0.10928 4.5e-190 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 8.4e-193 1.1e-195 -448.89 0.0 50 488 363 598 0.10246 4.6e-198 243 3 M6247_1.02 FOXO4 MRTAAACAA 1.1e-080 1.5e-083 -190.74 0.0 52 492 250 599 0.10569 5.9e-086 245 3 M6249_1.02 FOXP3 AAWCAMATT 9.6e-001 1.3e-003 -6.66 0.0 428 492 554 598 0.86992 5.2e-006 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 4.7e-171 6.3e-174 -398.82 0.0 53 489 347 587 0.10838 2.6e-176 244 3 M6262_1.02 GFI1B WGCMGTGATTT 2.1e-005 2.8e-008 -17.38 0.0 304 490 437 586 0.62041 1.2e-010 244 3 M6263_1.02 GFI1 RCWSTGATTT 1.7e-005 2.3e-008 -17.59 0.0 305 491 439 589 0.62118 9.3e-011 245 3 M6269_1.02 HBP1 AYYCATTGA 5.1e-004 6.8e-007 -14.20 0.0 256 492 381 595 0.52033 2.8e-009 245 3 M6271_1.02 HES1 KGKCKCGTGBCKB 1.4e-001 1.9e-004 -8.59 0.0 352 488 472 584 0.72131 7.6e-007 243 3 M6274_1.02 HIC1 GGGKTGCCC 1.2e0000 1.6e-003 -6.41 0.0 122 492 192 584 0.24797 6.7e-006 245 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 1.2e-008 1.6e-011 -24.84 0.0 221 485 246 381 0.45567 6.8e-014 242 3 M6279_1.02 HMGA1 AAAATWN 6.2e-002 8.3e-005 -9.40 0.0 412 494 541 597 0.83401 3.4e-007 246 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 1.6e-016 2.1e-019 -42.99 0.0 54 486 148 588 0.11111 8.8e-022 242 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 3.0e-269 4.0e-272 -624.92 0.0 57 487 440 591 0.11704 1.6e-274 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 6.8e-056 9.1e-059 -133.64 0.0 67 489 246 599 0.13701 3.7e-061 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 7.7e-009 1.0e-011 -25.30 0.0 324 490 463 577 0.66122 4.2e-014 244 3 M6293_1.02 HOXA7 KCCAATCKATYGAKB 2.5e-007 3.3e-010 -21.83 0.0 264 486 400 583 0.54321 1.4e-012 242 3 M6296_1.02 HOXB6 KKCATMAATCAWT 3.8e-003 5.1e-006 -12.19 0.0 86 488 101 337 0.17623 2.1e-008 243 3 M6297_1.02 HOXB7 MATYAATCAA 4.9e-233 6.6e-236 -541.52 0.0 49 491 390 587 0.09980 2.7e-238 245 3 M6298_1.02 HOXB8 BMATTAATCAA 2.2e-190 3.0e-193 -443.31 0.0 52 490 362 587 0.10612 1.2e-195 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 7.5e-309 1.0e-311 -716.10 0.0 58 486 459 564 0.11934 4.2e-314 242 3 M6301_1.02 HOXD10 AATTAAARCA 3.7e-044 5.0e-047 -106.62 0.0 67 491 224 587 0.13646 2.0e-049 245 3 M6302_1.02 HOXD13 TCYCTAATAAA 3.5e-003 4.6e-006 -12.28 0.0 428 490 564 598 0.87347 1.9e-008 244 3 M6304_1.02 HOXD9 HMATNAAWYT 3.1e-031 4.1e-034 -76.87 0.0 59 491 183 569 0.12016 1.7e-036 245 3 M6312_1.02 IRF7 GAAASYGAAA 3.1e-004 4.1e-007 -14.70 0.0 79 491 151 586 0.16090 1.7e-009 245 3 M6314_1.02 IRF9 GAAAGCGAAAYT 1.9e-004 2.5e-007 -15.21 0.0 105 489 134 382 0.21472 1.0e-009 244 3 M6321_1.02 KLF15 RSMKGGGAGDKGGGGSS 5.5e-001 7.3e-004 -7.22 0.0 358 484 467 569 0.73967 3.0e-006 241 3 M6322_1.02 KLF1 CAGGGTGKGGC 1.6e-001 2.1e-004 -8.47 0.0 358 490 467 571 0.73061 8.6e-007 244 3 M6323_1.02 KLF3 HRCYWGGGTGKGGCT 3.9e-002 5.1e-005 -9.87 0.0 364 486 474 565 0.74897 2.1e-007 242 3 M6325_1.02 KLF6 GGGGGCKG 3.5e0000 4.7e-003 -5.36 0.0 335 493 447 590 0.67951 1.9e-005 246 3 M6328_1.02 LHX2 YRSDTTYAATWAG 6.3e-003 8.4e-006 -11.69 0.0 200 488 292 556 0.40984 3.4e-008 243 3 M6329_1.02 LHX3 AAAATTAATTARY 3.0e-192 3.9e-195 -447.63 0.0 62 488 386 583 0.12705 1.6e-197 243 3 M6330_1.02 MAFA BTGCTGACBMYGCARYHTYCV 2.7e-006 3.6e-009 -19.43 0.0 296 480 437 584 0.61667 1.5e-011 239 3 M6331_1.02 MAFB WGCTGACDS 1.8e0000 2.4e-003 -6.05 0.0 300 492 416 599 0.60976 9.6e-006 245 3 M6336_1.02 MAZ DGGGDRGGGAGGGRGGG 5.6e-001 7.5e-004 -7.20 0.0 354 484 462 568 0.73140 3.1e-006 241 3 M6339_1.02 MECP2 YYCCGGS 5.7e0000 7.5e-003 -4.89 0.0 352 494 466 593 0.71255 3.1e-005 246 3 M6342_1.02 MEF2D BCTAWAAATAGC 3.6e-002 4.7e-005 -9.96 0.0 63 489 118 571 0.12883 1.9e-007 244 3 M6347_1.02 MSX2 TAATTNK 1.7e0000 2.3e-003 -6.09 0.0 394 494 512 591 0.79757 9.2e-006 246 3 M6348_1.02 MTF1 MGKGCCGTGTGCAAADS 6.3e-025 8.3e-028 -62.35 0.0 148 484 265 473 0.30579 3.5e-030 241 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 6.8e-010 9.0e-013 -27.73 0.0 283 489 434 591 0.57873 3.7e-015 244 3 M6374_1.02 NKX2-1 STCAAGKGCH 6.7e-009 8.9e-012 -25.45 0.0 145 491 264 599 0.29532 3.6e-014 245 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 2.4e-001 3.2e-004 -8.03 0.0 273 489 358 544 0.55828 1.3e-006 244 3 M6377_1.02 NKX2-8 TTCAAGKRC 7.0e-002 9.4e-005 -9.28 0.0 276 492 386 582 0.56098 3.8e-007 245 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 4.6e-331 6.1e-334 -767.26 0.0 46 488 454 589 0.09426 2.5e-336 243 3 M6379_1.02 NKX3-2 ARYTAAGTGGV 5.0e-003 6.7e-006 -11.91 0.0 160 490 252 577 0.32653 2.8e-008 244 3 M6385_1.02 NR1I2 VTGAACTYNNTTRACCYHH 2.5e0000 3.3e-003 -5.70 0.0 210 482 291 554 0.43568 1.4e-005 240 3 M6387_1.02 NR1I3 HTGAACTYBBYTGACCYY 8.9e0000 1.2e-002 -4.43 0.0 251 483 321 530 0.51967 5.0e-005 241 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 7.6e-308 1.0e-310 -713.79 0.0 62 480 471 570 0.12917 4.2e-313 239 3 M6400_1.02 OTX1 BTAATCCT 3.5e-008 4.7e-011 -23.79 0.0 321 493 468 594 0.65112 1.9e-013 246 3 M6401_1.02 OTX2 HYYTAATCCBWKHDM 2.6e-007 3.4e-010 -21.80 0.0 318 486 456 578 0.65432 1.4e-012 242 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 6.2e-001 8.3e-004 -7.10 0.0 369 483 481 571 0.76398 3.4e-006 241 3 M6410_1.02 PAX6 TSAWGCGTRAA 3.4e-004 4.5e-007 -14.61 0.0 302 490 424 578 0.61633 1.9e-009 244 3 M6411_1.02 PAX8 BTVAYTSRMGYRKR 6.0e-005 8.0e-008 -16.34 0.0 315 487 453 592 0.64682 3.3e-010 243 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 4.5e-103 6.0e-106 -242.28 0.0 68 486 313 599 0.13992 2.5e-108 242 3 M6417_1.02 POU1F1 RWATATTCATKAR 1.9e-029 2.6e-032 -72.74 0.0 50 488 169 598 0.10246 1.1e-034 243 3 M6418_1.02 PITX2 DBTAATCCMA 6.4e-006 8.5e-009 -18.59 0.0 331 491 474 596 0.67413 3.5e-011 245 3 M6426_1.02 POU3F2 CATRAATWWT 1.2e-227 1.6e-230 -529.10 0.0 47 491 384 599 0.09572 6.7e-233 245 3 M6429_1.02 POU6F1 CATAAWTTATGCR 2.2e-002 2.9e-005 -10.45 0.0 402 488 340 370 0.82377 1.2e-007 243 3 M6432_1.02 PPARD TGACCTTTNNCCTR 9.6e0000 1.3e-002 -4.35 0.0 147 487 215 566 0.30185 5.3e-005 243 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 1.6e-062 2.1e-065 -148.94 0.0 64 486 251 596 0.13169 8.6e-068 242 3 M6440_1.02 PRRX2 YTAATTR 3.7e-001 5.0e-004 -7.61 0.0 404 494 495 556 0.81781 2.0e-006 246 3 M6442_1.02 PURA CCMBGCCCNCCMMYWCC 3.7e-007 4.9e-010 -21.43 0.0 324 484 467 584 0.66942 2.0e-012 241 3 M6462_1.02 RXRG DTGACCTTTGACC 8.2e0000 1.1e-002 -4.51 0.0 462 488 341 345 0.94672 4.5e-005 243 3 M6465_1.02 SMAD3 STGTCTGBCY 6.9e0000 9.2e-003 -4.68 0.0 139 491 215 599 0.28310 3.8e-005 245 3 M6471_1.02 SOX13 YATTGTTY 6.4e-002 8.6e-005 -9.36 0.0 67 493 123 582 0.13590 3.5e-007 246 3 M6476_1.02 SOX4 GAGAACAAAGSG 8.6e-003 1.1e-005 -11.38 0.0 141 489 211 530 0.28834 4.7e-008 244 3 M6482_1.02 SP3 VGVVGGGGGCGGGGCBRGSS 2.3e-001 3.1e-004 -8.09 0.0 337 481 437 553 0.70062 1.3e-006 240 3 M6503_1.02 TBX2 GKSRCDYYTCACACCTVTGWWKBCA 1.4e-002 1.9e-005 -10.89 0.0 326 476 396 500 0.68487 7.8e-008 237 3 M6505_1.02 TBX5 AGGTGTGA 1.7e0000 2.3e-003 -6.08 0.0 399 493 525 599 0.80933 9.3e-006 246 3 M6509_1.02 TEAD4 AAAAAYAKCYCT 1.5e0000 2.0e-003 -6.21 0.0 67 489 115 563 0.13701 8.3e-006 244 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.6e-080 2.2e-083 -190.34 0.0 63 487 273 593 0.12936 9.0e-086 243 3 M6515_1.02 TFDP1 AWWKRGCGGGAAAY 3.1e0000 4.1e-003 -5.49 0.0 363 487 389 470 0.74538 1.7e-005 243 3 M6534_1.02 VSX2 WDAGCTAATTA 3.5e-004 4.7e-007 -14.58 0.0 382 490 461 523 0.77959 1.9e-009 244 3 M6535_1.02 WT1 GMGGGGGCGKGGG 4.3e0000 5.7e-003 -5.17 0.0 336 488 424 552 0.68852 2.3e-005 243 3 M6542_1.02 ZBTB6 VGRTGATRGAGCC 5.9e-004 7.8e-007 -14.06 0.0 220 488 321 559 0.45082 3.2e-009 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 7.7e-305 1.0e-307 -706.87 0.0 50 490 443 580 0.10204 4.2e-310 244 3 M6547_1.02 ZFX SVGSSSSSCAGGCCBVGSC 1.2e0000 1.7e-003 -6.40 0.0 358 482 459 559 0.74274 6.9e-006 240 3 M6552_1.02 ZNF148 KGVGKGGGGGAGGGG 1.7e-003 2.2e-006 -13.03 0.0 366 486 474 556 0.75309 9.1e-009 242 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).