# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Sun Mar 18 18:28:13 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Sun Mar 18 18:28:13 PDT 2018) # host: surya # when: Sun Mar 18 18:55:52 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.393 C 0.115 G 0.115 T 0.377 MOTIF AATAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AATAAATA TATTTATT 597 128 1.0e-207 2.1e-203 # AATAAATA TATTTATT 597 128 1.0e-207 2.1e-203 letter-probability matrix: alength= 4 w= 8 nsites= 3032 E= 2.1e-203 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWS DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWS SWCTC 469 67 4.4e-132 9.1e-128 # GAGAC GTCTC 363 18 2.2e-117 4.7e-113 # GAGTC GACTC 252 22 1.9e-063 4.0e-059 # GAGTG CACTC 138 12 7.1e-032 1.5e-027 # GAGAG CTCTC 63 26 3.0e-005 6.2e-001 letter-probability matrix: alength= 4 w= 5 nsites= 794 E= 9.1e-128 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.554156 0.000000 0.000000 0.445844 0.000000 0.751889 0.248111 0.000000 MOTIF CWGRG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CWGRG CYCWG 295 72 1.5e-046 2.9e-042 # CAGAG CTCTG 163 21 5.1e-033 9.7e-029 # CTGGG CCCAG 114 24 3.6e-017 6.7e-013 # CAGGG CCCTG 51 19 5.3e-005 1.0e+000 # CTGAG CTCAG 35 14 1.6e-003 3.0e+001 letter-probability matrix: alength= 4 w= 5 nsites= 375 E= 2.9e-042 0.000000 1.000000 0.000000 0.000000 0.594667 0.000000 0.000000 0.405333 0.000000 0.000000 1.000000 0.000000 0.552000 0.000000 0.448000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CATCTCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATCTCA TGAGATG 94 4 3.1e-025 5.4e-021 # CATCTCA TGAGATG 94 4 3.1e-025 5.4e-021 letter-probability matrix: alength= 4 w= 7 nsites= 94 E= 5.4e-021 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGCVA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GAGCVA TBGCTC 85 12 4.8e-016 8.2e-012 # GAGCGA TCGCTC 27 0 5.5e-009 9.5e-005 # GAGCAA TTGCTC 40 9 3.1e-006 5.3e-002 # GAGCCA TGGCTC 20 3 2.2e-004 3.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 89 E= 8.2e-012 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.460674 0.224719 0.314607 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWGKC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CWGKC GMCWG 147 61 2.7e-011 4.6e-007 # CAGGC GCCTG 50 15 4.6e-006 7.8e-002 # CTGTC GACAG 46 18 2.2e-004 3.7e+000 # CAGTC GACTG 33 11 5.1e-004 8.7e+000 # CTGGC GCCAG 48 23 1.5e-003 2.6e+001 letter-probability matrix: alength= 4 w= 5 nsites= 164 E= 4.6e-007 0.000000 1.000000 0.000000 0.000000 0.469512 0.000000 0.000000 0.530488 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.524390 0.475610 0.000000 1.000000 0.000000 0.000000 MOTIF CAMC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CAMC GKTG 247 160 7.3e-008 1.2e-003 # CACC GGTG 129 65 3.2e-007 5.2e-003 # CAAC GTTG 151 105 7.4e-004 1.2e+001 letter-probability matrix: alength= 4 w= 4 nsites= 309 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.543689 0.456311 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 22.87 seconds