******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:28628223-28628723 1.0000 100 chr19:43464145-43464645 1.0000 100 chr1:222711390-222711890 1.0000 100 chr12:53942433-53942933 1.0000 100 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chr19:10194810-10195310 1.0000 100 chr11:86244406-86244906 1.0000 100 chr11:61971494-61971994 1.0000 100 chr3:9792639-9793139 1.0000 100 chrX:53422169-53422669 1.0000 100 chr7:21945800-21946300 1.0000 100 chr19:42302339-42302839 1.0000 100 chr5:1327311-1327811 1.0000 100 chrX:49166316-49166816 1.0000 100 chr19:45406264-45406764 1.0000 100 chr10:97318871-97319371 1.0000 100 chr16:29961592-29962092 1.0000 100 chr17:7686130-7686630 1.0000 100 chr19:47778274-47778774 1.0000 100 chr1:46303252-46303752 1.0000 100 chr11:126062945-12606344 1.0000 100 chr17:51260024-51260524 1.0000 100 chr15:67254500-67255000 1.0000 100 chr6:110179586-110180086 1.0000 100 chr1:19596261-19596761 1.0000 100 chr2:95165692-95166192 1.0000 100 chr3:111859329-111859829 1.0000 100 chr20:54207721-54208221 1.0000 100 chr19:30225181-30225681 1.0000 100 chr5:134371037-134371537 1.0000 100 chr3:170222009-170222509 1.0000 100 chr9:92325543-92326043 1.0000 100 chr16:14974616-14975116 1.0000 100 chr17:35808976-35809476 1.0000 100 chr5:138337771-138338271 1.0000 100 chr17:7440368-7440868 1.0000 100 chr6:82363398-82363898 1.0000 100 chr5:90558387-90558887 1.0000 100 chr7:107563558-107564058 1.0000 100 chr10:104274753-10427525 1.0000 100 chr19:6737183-6737683 1.0000 100 chr5:173917863-173918363 1.0000 100 chr6:109382412-109382912 1.0000 100 chr1:200891142-200891642 1.0000 100 chr17:58513625-58514125 1.0000 100 chr10:92243236-92243736 1.0000 100 chr19:39403243-39403743 1.0000 100 chr3:11272280-11272780 1.0000 100 chr19:49676342-49676842 1.0000 100 chr19:12880467-12880967 1.0000 100 chr17:41734535-41735035 1.0000 100 chr19:46600587-46601087 1.0000 100 chr7:100673346-100673846 1.0000 100 chr1:11012277-11012777 1.0000 100 chr14:92121566-92122066 1.0000 100 chr19:55166705-55167205 1.0000 100 chr1:150272250-150272750 1.0000 100 chr18:3247397-3247897 1.0000 100 chr19:43619506-43620006 1.0000 100 chr16:21952913-21953413 1.0000 100 chr12:52069597-52070097 1.0000 100 chr19:40598103-40598603 1.0000 100 chr17:17237058-17237558 1.0000 100 chr19:38336463-38336963 1.0000 100 chr5:150904880-150905380 1.0000 100 chr22:29267869-29268369 1.0000 100 chr6:113971048-113971548 1.0000 100 chr1:27490196-27490696 1.0000 100 chr14:21103659-21104159 1.0000 100 chr21:42879184-42879684 1.0000 100 chr19:10332809-10333309 1.0000 100 chr1:155688671-155689171 1.0000 100 chr19:3500538-3501038 1.0000 100 chr12:53626007-53626507 1.0000 100 chrX:47218293-47218793 1.0000 100 chr21:33491409-33491909 1.0000 100 chr19:36378822-36379322 1.0000 100 chr12:120302163-12030266 1.0000 100 chr12:109999018-10999951 1.0000 100 chr19:35643433-35643933 1.0000 100 chr21:42973858-42974358 1.0000 100 chr19:35248583-35249083 1.0000 100 chr16:81006804-81007304 1.0000 100 chr3:13648331-13648831 1.0000 100 chr16:31179733-31180233 1.0000 100 chr16:29863163-29863663 1.0000 100 chr10:125823147-12582364 1.0000 100 chr19:35248296-35248796 1.0000 100 chr1:46132552-46133052 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.224 C 0.276 G 0.276 T 0.224 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.208 C 0.292 G 0.292 T 0.208 ******************************************************************************** ******************************************************************************** MOTIF TKWTDNTTTDTTTTTYWKTTTT MEME-1 width = 22 sites = 162 llr = 1600 E-value = 7.8e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3231333:13122121412122 pos.-specific C :2::13:2::122114122111 probability G :32222:12321:1:1:311:1 matrix T 6456437774656773546776 bits 2.3 2.0 1.8 1.6 Relative 1.4 Entropy 1.1 * * (14.2 bits) 0.9 * *** * * ** 0.7 * ** *** * *** * **** 0.5 * *** *** ***** * **** 0.2 ***** **************** 0.0 ---------------------- Multilevel TTTTTATTTTTTTTTCTTTTTT consensus AGA ACA G A ATAG AA sequence GT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:32343457-32343957 + 37 5.62e-12 TCtttctttt tttgtttttgtttttttttttt aacagggtct chr6:29967201-29967701 - 5 7.33e-12 AATATAGACA TTAGATTTTTTTTTTCTTTTTT TAGA chr19:55166705-55167205 + 15 2.05e-11 ATCttatttc ttgttttttgtttttttgtttt cttCATATGC chr9:85943729-85944229 + 59 2.65e-11 CCAttgatgt tttttgtttgtttttgtttttt tggtttgagc chr22:45279694-45280194 - 4 8.60e-11 CACTTTCCTA AGTTTATTTGTTTTTTTCTTTT TTT chr10:93437003-93437503 + 55 7.14e-10 CCGCTTAAAC TGTTttttttttcttctttctt cttcttcttA chr19:34259420-34259920 + 41 1.28e-09 AAGTtttttt tgtttgtttgtttgtttgtttT GTATTTCATT chr1:147170292-147170792 + 78 2.71e-09 TTCTCTGTGA TTATGGTTGgtttttttgtttt t chr10:110210833-11021133 + 35 9.28e-09 GTTTGTTGTG TACGTCtttttttttttttttt tCGGTCACTA chr17:41784981-41785481 - 79 9.28e-09 . TTGTTCTTGTCTTTTTTTTTTT GCCTCTACCC chr6:35263469-35263969 + 77 1.53e-08 cagagactag gttttcttttttcttttctttt cg chr1:150272250-150272750 + 54 1.81e-08 TTCTTGGTAG GCTTATTTTTTATTTTTATTTT GGTAGTGACA chr1:1692630-1693130 + 72 4.00e-08 AACACGCAGT TTTTTTTTTTTTTTTAAGGTCT AGGGTAA chr21:39387731-39388231 + 5 4.00e-08 tctt taTTAATCTATTTTTAAAATTT CGAAACAAAC chr9:134135596-134136096 + 50 4.00e-08 CTTTCCTGTA TGTATTATTATACTTCAGTTTT TAGGAAGTGC chr12:54358178-54358678 - 30 5.44e-08 AAGGTAGGTT TTTGGTTTTTTGTTTGTTTTTA GGGGAGGGAG chr15:88467304-88467804 - 67 7.36e-08 TTAGGTCCAC TGAATATTTTTATTTCCATTTA AATGCTCAAT chr5:181244112-181244612 - 24 7.36e-08 AAGCACAGTT TTAAAGTTTATTTTTAACATTT TAATACTCTA chr14:92121566-92122066 + 43 8.54e-08 TTGACTCCTC TCATTTTTTTTTTTTTTAGCTT CCAAACATTA chr10:92243236-92243736 - 29 8.54e-08 TTGACAAACC AGTTTATTTTTTTCCCTTTTAT TTCAACAACT chr19:12737157-12737657 + 8 9.90e-08 AGTGAAA ATATAATTTATATTTCTCCTAA AAGGCAAGTA chr1:154936879-154937379 - 35 1.33e-07 CTCACTCCAG AGATTTTTTTTCCTAAAGTTTT AGGGCTGCGC chr2:86105797-86106297 - 9 1.33e-07 TTTTCCTAAA TGATTATTTTGATGTCTTATAT ATCTTTGA chrX:23937118-23937618 + 79 1.33e-07 ctgcacatgg gcttgcttttcttttctttttt chr6:124371514-124372014 - 62 1.53e-07 TCACATTTAC AGTGTGTTTTTTTTACCTTTAT AAAAGAAAAC chr6:133241221-133241721 + 42 1.76e-07 GCGCGCTCTC TCATTTTCTTTTCTTCTCCTTT CCCCCCTGTC chr3:11495918-11496418 - 40 2.03e-07 ACCCTTTCTC TGTGGATGTTTTTTTTAGTTAA AGAGCGATAA chr7:105268967-105269467 - 5 2.34e-07 TGTTCAAGAT TTCTTGTTTGTATTTTATTTTG CTAA chr10:125823147-12582364 - 10 2.68e-07 TGCGGTCCCA TCTTGCTTTTTTCTTCCGCTTT CCACCCTCC chr5:64768555-64769055 - 76 2.68e-07 TTT ATGTTATTTGTATTACAATATT AGAAGGGACA chr19:30662365-30662865 + 66 3.08e-07 GGTGACTGAG TAGTAGTTTTTCTCTCTTATTT TTCAATGAAG chr15:85471306-85471806 - 34 3.08e-07 AAAATGGGTG AATTTTATTGTGTTTAAATTAT ACCCTAAATA chr8:95269698-95270198 - 35 3.08e-07 TCTCTCTCGG ATTTAATTAGAATTTCCGTTTT TTCCAACAAA chr18:3520455-3520955 - 37 3.08e-07 TAAACAGGAG AAATTAATTTTCTCACAGTTTT GGAGGCTGGA chr6:24720790-24721290 - 23 4.04e-07 TATTCCGTAC TCTTGATCTGTTTTCCTCTTTT TCGGTAACCT chr10:8158312-8158812 + 26 5.28e-07 ttcctaatag tctttaataaattttctgctta ggctagttag chr12:64691550-64692050 + 54 6.02e-07 TCACAACCTT ATATTATTAGTCTGTCATTTTC AGAGGTGGGA chr10:95756008-95756508 - 73 6.86e-07 TCCTTC TATTTTTTTTTTCTTAAGGATT CAGATCAAAT chr16:29863163-29863663 - 18 8.87e-07 AAAGCAGAGA TTTTTATTCGGTCTTCTCTTTT ACCCTTTCCT chr17:39199947-39200447 + 12 8.87e-07 AACCGATTTC TGATATTTGACTTTTATCATTT CAGGCCTATA chr5:181246057-181246557 + 55 8.87e-07 ACTAGATCAC AGTTACATTTTTTTTCCTTTCG CGAAACCTCA chr1:172532365-172532865 - 51 8.87e-07 GCTTTGGAAC TGTTGCACTGTTTTCCTCTTTT GAGCACAGTT chr10:77756258-77756758 - 1 8.87e-07 GAACAGCCGC TCTTTGATTTGTTGTCTCCTTT chrX:40997052-40997552 - 71 8.87e-07 GCCGGAGG AGGGAATTTTTTTTTTTCTTAG CCAAATTGAA chr3:73236784-73237284 - 1 8.87e-07 AGGTGACAAC TGTTTTTTTTTGGTTTTTGTTT chr8:78515928-78516428 - 46 1.01e-06 CCCCGCGAGG TTGTGGATTGATTTTCTATTAA TGCTTTTACA chr20:46895434-46895934 + 38 1.01e-06 GAAAGTGGGA AATGGAATTGTTTTTTAGTCAT GAAGTCTGGA chr14:73714368-73714868 + 23 1.01e-06 GCGCATTTCC TTTTTCATAATTTAGCATTTTA ACAGTAAACA chr13:75549367-75549867 + 14 1.14e-06 TCTCCCGAAA TAGGAAATTGGCTTATTTTTTT CTCCTCGGCA chr13:75537746-75538246 + 5 1.14e-06 ATAT TTTTTCTTAATTCAACATATAT CTTAGGAGAC chr17:2400698-2401198 - 9 1.30e-06 CATCCCATTT TTTTAAATTTGCAATTTTATAT TTTGCAAA chr20:43590536-43591036 - 19 1.47e-06 AAATAAACCC ATTTAATTTTGTTCTTTAGTAT CAATTACGAG chr17:48555935-48556435 - 25 1.47e-06 CCAATCTAGA TTTAAATTTTTACCTGTTCTTT AAGGAAAAAA chr5:10249784-10250284 - 69 1.87e-06 TCAAGAGCAG ATTGAATTTGTCATTTTTTAAA ACGTTACCAC chr6:125945735-125946235 - 9 1.87e-06 CCAGGTCACT GCATTCTCTTGTTTTCCTTTTT TCCTCTTA chr22:31055271-31055771 - 60 1.87e-06 GAGTGTTGTG TGTTTCTGTGTGTGTGTGTTTT AAGGGATAAA chr17:59964703-59965203 + 23 2.69e-06 TAATAAGTCG TTGTTATGTGTTATGTATTTAT GTGGCATCCA chr19:49150257-49150757 + 34 2.69e-06 TTTCTCTACT TTGTAATTTATTGATCAGTTTC TGTTGGGAGA chr6:104955830-104956330 + 55 3.02e-06 TACAAGTCAA TATGATATGAATTTACCTTTTT TCTCCCACTT chr18:3247397-3247897 + 34 3.40e-06 CAGAGGACCA TTATATATTGCTCTATATTCTA GGTCGCCCAC chr13:52652727-52653227 + 45 3.40e-06 CATGTTTTTC TTTCCCTTTGGTATTTATTTTA TCCCCCTTTC chr10:72096255-72096755 + 79 3.82e-06 AAGGCAAACA ACTTTAATGGTTATTTTGCTAA chr8:37693320-37693820 + 53 3.82e-06 tccttcattc actacctttttccttctctttt cctctcCAAA chr20:31738670-31739170 + 61 3.82e-06 ATAACGAGAA TAATTTTTAAAAATAGAGTTTT CTTCCCTGAA chr12:57245086-57245586 + 78 3.82e-06 gccatctgcc taatgcaggaACtttttttttt t chr11:61971494-61971994 + 1 4.29e-06 . tttatgattgtttatatgattg cttgtgtCCG chr18:48847928-48848428 + 61 4.80e-06 CCTTTACCCG TCACTATCTTTTCTTCTTTGTT TCCCTCTCTC chr16:70065882-70066382 - 33 5.38e-06 TGAATAGTAC TTTGTGATTATTATACTTCTAC CTAGATGATT chr12:50400294-50400794 - 75 6.02e-06 TAGT TCACAATCTAGATTTGATTTTT AAAGCCGACC chr7:96720701-96721201 - 49 6.02e-06 TTGTCTGGGA ATTTATTCCTGTTTTGAGTTTT ATTTGTCTGG chr1:11012277-11012777 + 11 6.73e-06 TAGGTCCTGG TTTTATTTTAGCTTTCAGAGCT TCTCTGTAGG chr13:114313160-11431366 + 3 6.73e-06 tg taatgcatagtttgtttttcaa gatgaaagag chr10:93496029-93496529 + 64 7.52e-06 CCCATTAAAA ATAGTAATTTGCTTTCTCCTAA AAGCGTATAA chr1:217630968-217631468 - 12 7.52e-06 ACAAAAGTTT AATTTATTTGTCTCTGTCTCTA CTGCGAGTAG chr1:204307331-204307831 - 13 7.52e-06 TATTGGGAGA TGTTCCTTAGGTTTTCAGTTAG CGCTGGAGCA chr5:173918068-173918568 + 23 8.39e-06 GGCGAAATTG TGTGGCATGATTTTTTTGTATG AAAAGTGAAG chr17:32114491-32114991 - 30 9.36e-06 AGTAAGGTCC TCTCTCTTATTTTTAATGTGTT ACCCATTTGT chr22:19479061-19479561 + 74 1.04e-05 AAATGCCCTT TCGTGATTTATTTCCCCTTTTA TAGGT chr22:41845539-41846039 + 3 1.04e-05 ca tggtgttTATTTAGATAGATTT AGACAAAGTT chr3:9648950-9649450 + 46 1.04e-05 tcggcTTCCC TGTAATTGTTGATTCCACTTTT CCTCTGGTTC chr14:20690792-20691292 + 12 1.29e-05 ACTTTGTGGC TTTTACTTTGGCACTTATATCT AATGAGGTGT chr4:185425831-185426331 + 41 1.29e-05 AGCCGAAGAC TTATGTTTGGTAAATTCTATTA GTTAAGTCTT chr9:124771258-124771758 - 16 1.43e-05 CATCAAACGC TTTGTCATGGTTCTTGATATTG ACAGACTTTA chr15:71252121-71252621 - 75 1.43e-05 TCTC TTTTATAGATTACATCTGTTTG TACTTCTCAT chr6:28212158-28212658 - 35 1.43e-05 ACAGTGAAAG AAAGAAAGTCTTTTTGTGTTTA GCACAAGATT chr2:86832296-86832796 - 2 1.43e-05 GTGCCCTTCC TCTTATTTGATATGATATCTCT T chr4:182143827-182144327 - 2 1.59e-05 TGTCAAGATG ACAGGTACTTTATTTCTTCTTC T chr1:108560659-108561159 - 31 1.59e-05 ACTCCTGCAG TTTGGGTTATTTTAGTTTTTAA CAGCTCAAGT chr7:105013047-105013547 + 61 1.76e-05 AACCCTTCTT TTATTCTTTGGTCTCCCCCTTT TTTCTTCGAG chr1:202709156-202709656 - 72 1.76e-05 GGGGCAC AGGGCTTTTATTTTTCAACTAA AAAGTGGAGC chr6:158869358-158869858 - 19 1.76e-05 GTCTGCAATC TGTTAGTGGGGTTATATTTTAA TAAAAGAGCT chr3:111071325-111071825 - 24 1.76e-05 TTTCAAAAAA AAATATTCTTTTCATCCACTTT GATAACGGGG chr17:68102451-68102951 + 38 1.96e-05 CAGACCTGCT TTAAAAACACACTTTTTTTTTT GGTGGGGGGG chr5:6418628-6419128 + 31 1.96e-05 TTCAGCTTTA TCAATAACTATGTATTTGATTT CATCATACAA chr5:173917863-173918363 - 6 2.17e-05 TGTAGCCCAG TTTAAATTATACTCTTTGCTAT TTAAC chrX:153245241-153245741 - 47 2.17e-05 CAGAAATTTT ACTTGCATATTTCTTCCATTTG GTTTTCTCCC chr6:106359953-106360453 - 9 2.17e-05 AGAGTCTGAA TAATTAATTTGTACTCACATCT CATAAAAC chr5:141040792-141041292 + 74 2.17e-05 GGATTTTGCA ATATGGTGTATTATTTAATATC AGTCT chr2:74835171-74835671 + 54 2.17e-05 GGATTACTTG AGATTCTTGAGATTTATGTCCT TCCGAAAACG chr16:14974616-14975116 + 26 2.40e-05 ACTCCATGAA TAGTACTTTGTGATTATTATAC TTCTACCTTG chr2:158973495-158973995 - 58 2.40e-05 AAGAATCTTC ATATCCTTTGGTATGTTGTTAT GATCAGCAGT chr6:87473450-87473950 + 40 2.40e-05 gaaggcgtat ttgttgactaattgacatttaa ggagggcgag chr11:57667351-57667851 + 34 2.40e-05 CTTCTAGTAC ACACACATAATTCTTTTCTTAT TTCCGGGGGT chr19:38336463-38336963 - 72 2.65e-05 CACCTGG TCTTGGTTTCTATTTCTCGCTT TGACAGTCCC chr3:32684709-32685209 - 38 2.65e-05 TGTCCCTCAA TGTTACATAATATTACAATAAC CACATCTGAC chr1:151059871-151060371 - 66 2.65e-05 TAGGTCCTCT AATTTATGGATTTGAAATCTTA ACTCTAGACT chr4:87006773-87007273 + 18 2.65e-05 GCCCAGAGGC AATTTCTTTTCCTTTCTAACTG TGGCCCGCGT chr10:28628223-28628723 - 44 2.65e-05 CCCCCAAAAG AGGTATATGTTCATTAAGTTCT CCGTCATTTC chr12:120302163-12030266 + 69 2.93e-05 ATTTCTTGTG AGGGATTCTATTTCTCCTCTTT GCCCTCGGTG chr12:48189257-48189757 - 79 2.93e-05 . TTTTGTTCAAAAATATTTCTTA CCATACCAAG chr11:3854605-3855105 + 75 2.93e-05 TGGTTTGGAC ATTTCATTTTGCTTTCTGGCAT CATC chr18:45590012-45590512 - 40 2.93e-05 GCACCCGCAG TGAAGCTCTCTATCTCATTTAT CCAGGGAAGG chr1:41681565-41682065 + 77 2.93e-05 GGCTGCCCCA ACTTGGATGTTCTTTCTGACTA TG chr10:110567295-11056779 - 45 3.23e-05 CAGCGTTTTT TGGTGGATTTCTTTTGAATCTA GAATTCTGTA chr22:45534313-45534813 - 50 3.23e-05 GTCACTCTCA TGATACAGTGAGTGACATTTTT ACACAAGTGG chr11:111878563-11187906 - 5 3.23e-05 ACGGTTTAAG TTAGGAAGAGTTTTTCTGTTCC ATGT chr1:18902465-18902965 - 27 3.56e-05 ATGCCCCCGT TATGGCACTAGAAATATTTTTT ATTAGCCGAA chr17:7483891-7484391 - 76 3.56e-05 AGA AGAATTTTTTTCTTTAATCCCA CCGCCTCTCC chr19:45615713-45616213 - 51 3.93e-05 TCGCCCTACC TCTGTATTTGACTTCCACTTTC CTGATTTAAT chr5:134371037-134371537 - 43 4.32e-05 GAAGTAATAG ACAAATTTGTGTTCTCTGTGTT CAGACTAGAG chr20:50958429-50958929 + 41 4.32e-05 TCAATTAGAA ATATTCTGGATTTATACATCTT TGAAGTTTAA chr16:21952913-21953413 + 76 4.76e-05 GTGACGTACA TTATTCTCTGCATATATTTACT TGG chr15:85795373-85795873 + 6 4.76e-05 AACGG TTTGTGATTCTTCGTCCTTTTC CCTCCTGACT chr11:65134700-65135200 + 21 5.23e-05 GAGGGGAATG AAATGTTTTCTTAAACATTTAG GGAGAGTCAC chr20:25545142-25545642 - 3 5.23e-05 AACGCCACAC TGATAATGTTGATTACAAGCTT AT chr2:218286924-218287424 - 35 5.23e-05 AAGCCAGCTC TGATATTTTAGTGTTTAGATCC CTGTGGCTTC chr16:20900407-20900907 - 11 5.75e-05 CTCCCCCTAT TTTTCCTTTACGCTTTCATTAT CCTCCCCGCT chr1:94325327-94325827 - 9 5.75e-05 GGCCACTCCA TGGATCTTGGCTGTTCATTTAT TGTCATGT chr6:52352484-52352984 + 37 5.75e-05 GTTGCACCCA TGATTTTTTTCCTGTAAGTGTC ATACTGCTGT chr16:23269161-23269661 - 33 5.75e-05 GCGAGGCTTC TGTTGGCTTAGTATTATTTCTA CCAAGCTTTT chr1:235910469-235910969 - 5 5.75e-05 GAGGAGTCAT TGTATCACTGTCTTTGAAAATT AGGC chr22:38283181-38283681 + 32 6.92e-05 TGGGAGGCAT AATTACTTGAGAAGACATTCTT CAAGGGCCGT chr19:18204299-18204799 - 78 7.59e-05 T ATTTATTTTGAACCCCATATAT GTGAGGGTAT chr19:35930995-35931495 + 13 7.59e-05 gggtacttag aggatcattacattattctatt tctgtgtacg chr4:102825453-102825953 + 63 7.59e-05 AGGCAAAAAT AGGTACATTAGCTTTCCCTTAC TGCCATCGCA chr7:16645749-16646249 - 27 8.31e-05 AACTGCCAGC TGTAGAATTTTCAATATTACAT GTGGCGAAAT chr1:150235934-150236434 + 39 8.31e-05 CTCCCAAACG TGTTGGTTGATTCTTCAGCGTC ACATTACTTC chr1:56415250-56415750 - 41 8.31e-05 GGAAAGAGTG ATATAACTGGATTTACATTGTT AAAGATCACT chr16:85821563-85822063 - 58 8.31e-05 GTGTCTTGTG GAATTTATGGAAATACTTATTT CTGTGTTAAA chr17:35808976-35809476 - 37 9.09e-05 TTGCTCCGTC TTATTTACAATCCTATTTCTCA CTTTATTGGG chr1:42046752-42047252 + 12 9.09e-05 tgacctcttg ttgtggttattttctgagcata gttcaccagc chr7:103279887-103280387 + 48 9.09e-05 GCTTTGGGCT TACTCCTTGTTTCTTCATAATT CCTAGTGGAG chr6:41591758-41592258 + 38 9.95e-05 AAGGGGGgtg tgtgtgtgtgtctgtctgtctg tCTCAAGGTG chr16:23729532-23730032 - 1 1.09e-04 GAGATGCAAG GTTTTGCTTGTTTTAGTAATTA chr1:27490196-27490696 - 33 1.19e-04 TCTTCTTTCA ACACACTTTGTACGAGTTTTTA CACTTTCTTA chr2:73213784-73214284 - 66 1.19e-04 TCGGTGCCTT TTTGTGTCTGTACCTCTGTATC AGAGTCTGTG chr17:45147811-45148311 - 66 1.30e-04 AAAAGGTGCG TTATAAAGGCTATTATCGTATT TTGTTCTCAG chr5:40755122-40755622 - 41 1.30e-04 AGGGAAAGTC ACTAATACTGGTTTTTCTCTTG CGGTGGCGTT chr14:59161654-59162154 - 8 1.54e-04 CTAGCTGCAC TGGACATCTACATTTTAGTTTC TCCGAAA chr18:22604568-22605068 + 32 1.54e-04 GAAAGTTCAC ATAGTCTGTGGCTGTTTCTGTT TCAGCCTCTC chr16:31179733-31180233 + 16 1.68e-04 TCCTCAAAAA ATATGATTATGTATAGTATTCG CATGATTCTA chr10:88896876-88897376 - 20 2.16e-04 TCTGAGCTTG TAACAGTTTATTCTCTACATAA CCATAGCAAA chr2:43995882-43996382 - 44 2.54e-04 TCAAGCAACA TCGTTTATGTAAATATTACATT GGGTCTTCTG chr2:99181051-99181551 + 71 2.54e-04 TGCAGATCCT AATTGATTTTCCCTATTGCGTA CTGAATTG chr2:85707296-85707796 - 54 2.76e-04 CTATACCATC TAGGTTTGTGTGATACTATCTA GGCTTGTGTG chr15:90420403-90420903 + 37 2.76e-04 cttccatcct tgagattctatgattATTGCTA GGACAGGGTT chr1:46303252-46303752 - 39 2.99e-04 CCACACCCAA GTATAATTGATCTAGGAGTTTA TCTAAAATAG chr14:56579434-56579934 - 24 2.99e-04 ATTGGCGTTC ACCTACTTATAATGTGATTTAA GGTTCCTAAT chr20:543730-544230 - 79 3.24e-04 . GTTGTCACTTGTTAACACTATT GAAATAAAAT chrX:49002173-49002673 - 24 5.16e-04 TACATTCGGG TAGAACGTTGTATTACAGTTCA CCTGACTCGT chr12:4648642-4649142 - 53 6.95e-04 CAGATCTGGA ATAGGCTGTATAGGCTATTTAT AATCTCTAAT chr3:69250019-69250519 + 79 8.03e-04 tgcgtgtgtg tgtgtgtgtgtgtgtgtgtgtC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:32343457-32343957 5.6e-12 36_[+1]_42 chr6:29967201-29967701 7.3e-12 4_[-1]_74 chr19:55166705-55167205 2.1e-11 14_[+1]_64 chr9:85943729-85944229 2.7e-11 58_[+1]_20 chr22:45279694-45280194 8.6e-11 3_[-1]_75 chr10:93437003-93437503 7.1e-10 54_[+1]_24 chr19:34259420-34259920 1.3e-09 40_[+1]_38 chr1:147170292-147170792 2.7e-09 77_[+1]_1 chr10:110210833-11021133 9.3e-09 34_[+1]_44 chr17:41784981-41785481 9.3e-09 78_[-1] chr6:35263469-35263969 1.5e-08 76_[+1]_2 chr1:150272250-150272750 1.8e-08 53_[+1]_25 chr1:1692630-1693130 4e-08 71_[+1]_7 chr21:39387731-39388231 4e-08 4_[+1]_74 chr9:134135596-134136096 4e-08 49_[+1]_29 chr12:54358178-54358678 5.4e-08 29_[-1]_49 chr15:88467304-88467804 7.4e-08 66_[-1]_12 chr5:181244112-181244612 7.4e-08 23_[-1]_55 chr14:92121566-92122066 8.5e-08 42_[+1]_36 chr10:92243236-92243736 8.5e-08 28_[-1]_50 chr19:12737157-12737657 9.9e-08 7_[+1]_71 chr1:154936879-154937379 1.3e-07 34_[-1]_44 chr2:86105797-86106297 1.3e-07 8_[-1]_70 chrX:23937118-23937618 1.3e-07 78_[+1] chr6:124371514-124372014 1.5e-07 61_[-1]_17 chr6:133241221-133241721 1.8e-07 41_[+1]_37 chr3:11495918-11496418 2e-07 39_[-1]_39 chr7:105268967-105269467 2.3e-07 4_[-1]_74 chr10:125823147-12582364 2.7e-07 9_[-1]_69 chr5:64768555-64769055 2.7e-07 75_[-1]_3 chr19:30662365-30662865 3.1e-07 65_[+1]_13 chr15:85471306-85471806 3.1e-07 33_[-1]_45 chr8:95269698-95270198 3.1e-07 34_[-1]_44 chr18:3520455-3520955 3.1e-07 36_[-1]_42 chr6:24720790-24721290 4e-07 22_[-1]_56 chr10:8158312-8158812 5.3e-07 25_[+1]_53 chr12:64691550-64692050 6e-07 53_[+1]_25 chr10:95756008-95756508 6.9e-07 72_[-1]_6 chr16:29863163-29863663 8.9e-07 17_[-1]_61 chr17:39199947-39200447 8.9e-07 11_[+1]_67 chr5:181246057-181246557 8.9e-07 54_[+1]_24 chr1:172532365-172532865 8.9e-07 50_[-1]_28 chr10:77756258-77756758 8.9e-07 [-1]_78 chrX:40997052-40997552 8.9e-07 70_[-1]_8 chr3:73236784-73237284 8.9e-07 [-1]_78 chr8:78515928-78516428 1e-06 45_[-1]_33 chr20:46895434-46895934 1e-06 37_[+1]_41 chr14:73714368-73714868 1e-06 22_[+1]_56 chr13:75549367-75549867 1.1e-06 13_[+1]_65 chr13:75537746-75538246 1.1e-06 4_[+1]_74 chr17:2400698-2401198 1.3e-06 8_[-1]_70 chr20:43590536-43591036 1.5e-06 18_[-1]_60 chr17:48555935-48556435 1.5e-06 24_[-1]_54 chr5:10249784-10250284 1.9e-06 68_[-1]_10 chr6:125945735-125946235 1.9e-06 8_[-1]_70 chr22:31055271-31055771 1.9e-06 59_[-1]_19 chr17:59964703-59965203 2.7e-06 22_[+1]_56 chr19:49150257-49150757 2.7e-06 33_[+1]_45 chr6:104955830-104956330 3e-06 54_[+1]_24 chr18:3247397-3247897 3.4e-06 33_[+1]_45 chr13:52652727-52653227 3.4e-06 44_[+1]_34 chr10:72096255-72096755 3.8e-06 78_[+1] chr8:37693320-37693820 3.8e-06 52_[+1]_26 chr20:31738670-31739170 3.8e-06 60_[+1]_18 chr12:57245086-57245586 3.8e-06 77_[+1]_1 chr11:61971494-61971994 4.3e-06 [+1]_78 chr18:48847928-48848428 4.8e-06 60_[+1]_18 chr16:70065882-70066382 5.4e-06 32_[-1]_46 chr12:50400294-50400794 6e-06 74_[-1]_4 chr7:96720701-96721201 6e-06 48_[-1]_30 chr1:11012277-11012777 6.7e-06 10_[+1]_68 chr13:114313160-11431366 6.7e-06 2_[+1]_76 chr10:93496029-93496529 7.5e-06 63_[+1]_15 chr1:217630968-217631468 7.5e-06 11_[-1]_67 chr1:204307331-204307831 7.5e-06 12_[-1]_66 chr5:173918068-173918568 8.4e-06 22_[+1]_56 chr17:32114491-32114991 9.4e-06 29_[-1]_49 chr22:19479061-19479561 1e-05 73_[+1]_5 chr22:41845539-41846039 1e-05 2_[+1]_76 chr3:9648950-9649450 1e-05 45_[+1]_33 chr14:20690792-20691292 1.3e-05 11_[+1]_67 chr4:185425831-185426331 1.3e-05 40_[+1]_38 chr9:124771258-124771758 1.4e-05 15_[-1]_63 chr15:71252121-71252621 1.4e-05 74_[-1]_4 chr6:28212158-28212658 1.4e-05 34_[-1]_44 chr2:86832296-86832796 1.4e-05 1_[-1]_77 chr4:182143827-182144327 1.6e-05 1_[-1]_77 chr1:108560659-108561159 1.6e-05 30_[-1]_48 chr7:105013047-105013547 1.8e-05 60_[+1]_18 chr1:202709156-202709656 1.8e-05 71_[-1]_7 chr6:158869358-158869858 1.8e-05 18_[-1]_60 chr3:111071325-111071825 1.8e-05 23_[-1]_55 chr17:68102451-68102951 2e-05 37_[+1]_41 chr5:6418628-6419128 2e-05 30_[+1]_48 chr5:173917863-173918363 2.2e-05 5_[-1]_73 chrX:153245241-153245741 2.2e-05 46_[-1]_32 chr6:106359953-106360453 2.2e-05 8_[-1]_70 chr5:141040792-141041292 2.2e-05 73_[+1]_5 chr2:74835171-74835671 2.2e-05 53_[+1]_25 chr16:14974616-14975116 2.4e-05 25_[+1]_53 chr2:158973495-158973995 2.4e-05 57_[-1]_21 chr6:87473450-87473950 2.4e-05 39_[+1]_39 chr11:57667351-57667851 2.4e-05 33_[+1]_45 chr19:38336463-38336963 2.6e-05 71_[-1]_7 chr3:32684709-32685209 2.6e-05 37_[-1]_41 chr1:151059871-151060371 2.6e-05 65_[-1]_13 chr4:87006773-87007273 2.6e-05 17_[+1]_61 chr10:28628223-28628723 2.6e-05 43_[-1]_35 chr12:120302163-12030266 2.9e-05 68_[+1]_10 chr12:48189257-48189757 2.9e-05 78_[-1] chr11:3854605-3855105 2.9e-05 74_[+1]_4 chr18:45590012-45590512 2.9e-05 39_[-1]_39 chr1:41681565-41682065 2.9e-05 76_[+1]_2 chr10:110567295-11056779 3.2e-05 44_[-1]_34 chr22:45534313-45534813 3.2e-05 49_[-1]_29 chr11:111878563-11187906 3.2e-05 4_[-1]_74 chr1:18902465-18902965 3.6e-05 26_[-1]_52 chr17:7483891-7484391 3.6e-05 75_[-1]_3 chr19:45615713-45616213 3.9e-05 50_[-1]_28 chr5:134371037-134371537 4.3e-05 42_[-1]_36 chr20:50958429-50958929 4.3e-05 40_[+1]_38 chr16:21952913-21953413 4.8e-05 75_[+1]_3 chr15:85795373-85795873 4.8e-05 5_[+1]_73 chr11:65134700-65135200 5.2e-05 20_[+1]_58 chr20:25545142-25545642 5.2e-05 2_[-1]_76 chr2:218286924-218287424 5.2e-05 34_[-1]_44 chr16:20900407-20900907 5.7e-05 10_[-1]_68 chr1:94325327-94325827 5.7e-05 8_[-1]_70 chr6:52352484-52352984 5.7e-05 36_[+1]_42 chr16:23269161-23269661 5.7e-05 32_[-1]_46 chr1:235910469-235910969 5.7e-05 4_[-1]_74 chr22:38283181-38283681 6.9e-05 31_[+1]_47 chr19:18204299-18204799 7.6e-05 77_[-1]_1 chr19:35930995-35931495 7.6e-05 12_[+1]_66 chr4:102825453-102825953 7.6e-05 62_[+1]_16 chr7:16645749-16646249 8.3e-05 26_[-1]_52 chr1:150235934-150236434 8.3e-05 38_[+1]_40 chr1:56415250-56415750 8.3e-05 40_[-1]_38 chr16:85821563-85822063 8.3e-05 57_[-1]_21 chr17:35808976-35809476 9.1e-05 36_[-1]_42 chr1:42046752-42047252 9.1e-05 11_[+1]_67 chr7:103279887-103280387 9.1e-05 47_[+1]_31 chr6:41591758-41592258 9.9e-05 37_[+1]_41 chr16:23729532-23730032 0.00011 [-1]_78 chr1:27490196-27490696 0.00012 32_[-1]_46 chr2:73213784-73214284 0.00012 65_[-1]_13 chr17:45147811-45148311 0.00013 65_[-1]_13 chr5:40755122-40755622 0.00013 40_[-1]_38 chr14:59161654-59162154 0.00015 7_[-1]_71 chr18:22604568-22605068 0.00015 31_[+1]_47 chr16:31179733-31180233 0.00017 15_[+1]_63 chr10:88896876-88897376 0.00022 19_[-1]_59 chr2:43995882-43996382 0.00025 43_[-1]_35 chr2:99181051-99181551 0.00025 70_[+1]_8 chr2:85707296-85707796 0.00028 53_[-1]_25 chr15:90420403-90420903 0.00028 36_[+1]_42 chr1:46303252-46303752 0.0003 38_[-1]_40 chr14:56579434-56579934 0.0003 23_[-1]_55 chr20:543730-544230 0.00032 78_[-1] chrX:49002173-49002673 0.00052 23_[-1]_55 chr12:4648642-4649142 0.00069 52_[-1]_26 chr3:69250019-69250519 0.0008 78_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKWTDNTTTDTTTTTYWKTTTT width=22 seqs=162 chr1:32343457-32343957 ( 37) TTTGTTTTTGTTTTTTTTTTTT 1 chr6:29967201-29967701 ( 5) TTAGATTTTTTTTTTCTTTTTT 1 chr19:55166705-55167205 ( 15) TTGTTTTTTGTTTTTTTGTTTT 1 chr9:85943729-85944229 ( 59) TTTTTGTTTGTTTTTGTTTTTT 1 chr22:45279694-45280194 ( 4) AGTTTATTTGTTTTTTTCTTTT 1 chr10:93437003-93437503 ( 55) TGTTTTTTTTTTCTTCTTTCTT 1 chr19:34259420-34259920 ( 41) TGTTTGTTTGTTTGTTTGTTTT 1 chr1:147170292-147170792 ( 78) TTATGGTTGGTTTTTTTGTTTT 1 chr10:110210833-11021133 ( 35) TACGTCTTTTTTTTTTTTTTTT 1 chr17:41784981-41785481 ( 79) TTGTTCTTGTCTTTTTTTTTTT 1 chr6:35263469-35263969 ( 77) GTTTTCTTTTTTCTTTTCTTTT 1 chr1:150272250-150272750 ( 54) GCTTATTTTTTATTTTTATTTT 1 chr1:1692630-1693130 ( 72) TTTTTTTTTTTTTTTAAGGTCT 1 chr21:39387731-39388231 ( 5) TATTAATCTATTTTTAAAATTT 1 chr9:134135596-134136096 ( 50) TGTATTATTATACTTCAGTTTT 1 chr12:54358178-54358678 ( 30) TTTGGTTTTTTGTTTGTTTTTA 1 chr15:88467304-88467804 ( 67) TGAATATTTTTATTTCCATTTA 1 chr5:181244112-181244612 ( 24) TTAAAGTTTATTTTTAACATTT 1 chr14:92121566-92122066 ( 43) TCATTTTTTTTTTTTTTAGCTT 1 chr10:92243236-92243736 ( 29) AGTTTATTTTTTTCCCTTTTAT 1 chr19:12737157-12737657 ( 8) ATATAATTTATATTTCTCCTAA 1 chr1:154936879-154937379 ( 35) AGATTTTTTTTCCTAAAGTTTT 1 chr2:86105797-86106297 ( 9) TGATTATTTTGATGTCTTATAT 1 chrX:23937118-23937618 ( 79) GCTTGCTTTTCTTTTCTTTTTT 1 chr6:124371514-124372014 ( 62) AGTGTGTTTTTTTTACCTTTAT 1 chr6:133241221-133241721 ( 42) TCATTTTCTTTTCTTCTCCTTT 1 chr3:11495918-11496418 ( 40) TGTGGATGTTTTTTTTAGTTAA 1 chr7:105268967-105269467 ( 5) TTCTTGTTTGTATTTTATTTTG 1 chr10:125823147-12582364 ( 10) TCTTGCTTTTTTCTTCCGCTTT 1 chr5:64768555-64769055 ( 76) ATGTTATTTGTATTACAATATT 1 chr19:30662365-30662865 ( 66) TAGTAGTTTTTCTCTCTTATTT 1 chr15:85471306-85471806 ( 34) AATTTTATTGTGTTTAAATTAT 1 chr8:95269698-95270198 ( 35) ATTTAATTAGAATTTCCGTTTT 1 chr18:3520455-3520955 ( 37) AAATTAATTTTCTCACAGTTTT 1 chr6:24720790-24721290 ( 23) TCTTGATCTGTTTTCCTCTTTT 1 chr10:8158312-8158812 ( 26) TCTTTAATAAATTTTCTGCTTA 1 chr12:64691550-64692050 ( 54) ATATTATTAGTCTGTCATTTTC 1 chr10:95756008-95756508 ( 73) TATTTTTTTTTTCTTAAGGATT 1 chr16:29863163-29863663 ( 18) TTTTTATTCGGTCTTCTCTTTT 1 chr17:39199947-39200447 ( 12) TGATATTTGACTTTTATCATTT 1 chr5:181246057-181246557 ( 55) AGTTACATTTTTTTTCCTTTCG 1 chr1:172532365-172532865 ( 51) TGTTGCACTGTTTTCCTCTTTT 1 chr10:77756258-77756758 ( 1) TCTTTGATTTGTTGTCTCCTTT 1 chrX:40997052-40997552 ( 71) AGGGAATTTTTTTTTTTCTTAG 1 chr3:73236784-73237284 ( 1) TGTTTTTTTTTGGTTTTTGTTT 1 chr8:78515928-78516428 ( 46) TTGTGGATTGATTTTCTATTAA 1 chr20:46895434-46895934 ( 38) AATGGAATTGTTTTTTAGTCAT 1 chr14:73714368-73714868 ( 23) TTTTTCATAATTTAGCATTTTA 1 chr13:75549367-75549867 ( 14) TAGGAAATTGGCTTATTTTTTT 1 chr13:75537746-75538246 ( 5) TTTTTCTTAATTCAACATATAT 1 chr17:2400698-2401198 ( 9) TTTTAAATTTGCAATTTTATAT 1 chr20:43590536-43591036 ( 19) ATTTAATTTTGTTCTTTAGTAT 1 chr17:48555935-48556435 ( 25) TTTAAATTTTTACCTGTTCTTT 1 chr5:10249784-10250284 ( 69) ATTGAATTTGTCATTTTTTAAA 1 chr6:125945735-125946235 ( 9) GCATTCTCTTGTTTTCCTTTTT 1 chr22:31055271-31055771 ( 60) TGTTTCTGTGTGTGTGTGTTTT 1 chr17:59964703-59965203 ( 23) TTGTTATGTGTTATGTATTTAT 1 chr19:49150257-49150757 ( 34) TTGTAATTTATTGATCAGTTTC 1 chr6:104955830-104956330 ( 55) TATGATATGAATTTACCTTTTT 1 chr18:3247397-3247897 ( 34) TTATATATTGCTCTATATTCTA 1 chr13:52652727-52653227 ( 45) TTTCCCTTTGGTATTTATTTTA 1 chr10:72096255-72096755 ( 79) ACTTTAATGGTTATTTTGCTAA 1 chr8:37693320-37693820 ( 53) ACTACCTTTTTCCTTCTCTTTT 1 chr20:31738670-31739170 ( 61) TAATTTTTAAAAATAGAGTTTT 1 chr12:57245086-57245586 ( 78) TAATGCAGGAACTTTTTTTTTT 1 chr11:61971494-61971994 ( 1) TTTATGATTGTTTATATGATTG 1 chr18:48847928-48848428 ( 61) TCACTATCTTTTCTTCTTTGTT 1 chr16:70065882-70066382 ( 33) TTTGTGATTATTATACTTCTAC 1 chr12:50400294-50400794 ( 75) TCACAATCTAGATTTGATTTTT 1 chr7:96720701-96721201 ( 49) ATTTATTCCTGTTTTGAGTTTT 1 chr1:11012277-11012777 ( 11) TTTTATTTTAGCTTTCAGAGCT 1 chr13:114313160-11431366 ( 3) TAATGCATAGTTTGTTTTTCAA 1 chr10:93496029-93496529 ( 64) ATAGTAATTTGCTTTCTCCTAA 1 chr1:217630968-217631468 ( 12) AATTTATTTGTCTCTGTCTCTA 1 chr1:204307331-204307831 ( 13) TGTTCCTTAGGTTTTCAGTTAG 1 chr5:173918068-173918568 ( 23) TGTGGCATGATTTTTTTGTATG 1 chr17:32114491-32114991 ( 30) TCTCTCTTATTTTTAATGTGTT 1 chr22:19479061-19479561 ( 74) TCGTGATTTATTTCCCCTTTTA 1 chr22:41845539-41846039 ( 3) TGGTGTTTATTTAGATAGATTT 1 chr3:9648950-9649450 ( 46) TGTAATTGTTGATTCCACTTTT 1 chr14:20690792-20691292 ( 12) TTTTACTTTGGCACTTATATCT 1 chr4:185425831-185426331 ( 41) TTATGTTTGGTAAATTCTATTA 1 chr9:124771258-124771758 ( 16) TTTGTCATGGTTCTTGATATTG 1 chr15:71252121-71252621 ( 75) TTTTATAGATTACATCTGTTTG 1 chr6:28212158-28212658 ( 35) AAAGAAAGTCTTTTTGTGTTTA 1 chr2:86832296-86832796 ( 2) TCTTATTTGATATGATATCTCT 1 chr4:182143827-182144327 ( 2) ACAGGTACTTTATTTCTTCTTC 1 chr1:108560659-108561159 ( 31) TTTGGGTTATTTTAGTTTTTAA 1 chr7:105013047-105013547 ( 61) TTATTCTTTGGTCTCCCCCTTT 1 chr1:202709156-202709656 ( 72) AGGGCTTTTATTTTTCAACTAA 1 chr6:158869358-158869858 ( 19) TGTTAGTGGGGTTATATTTTAA 1 chr3:111071325-111071825 ( 24) AAATATTCTTTTCATCCACTTT 1 chr17:68102451-68102951 ( 38) TTAAAAACACACTTTTTTTTTT 1 chr5:6418628-6419128 ( 31) TCAATAACTATGTATTTGATTT 1 chr5:173917863-173918363 ( 6) TTTAAATTATACTCTTTGCTAT 1 chrX:153245241-153245741 ( 47) ACTTGCATATTTCTTCCATTTG 1 chr6:106359953-106360453 ( 9) TAATTAATTTGTACTCACATCT 1 chr5:141040792-141041292 ( 74) ATATGGTGTATTATTTAATATC 1 chr2:74835171-74835671 ( 54) AGATTCTTGAGATTTATGTCCT 1 chr16:14974616-14975116 ( 26) TAGTACTTTGTGATTATTATAC 1 chr2:158973495-158973995 ( 58) ATATCCTTTGGTATGTTGTTAT 1 chr6:87473450-87473950 ( 40) TTGTTGACTAATTGACATTTAA 1 chr11:57667351-57667851 ( 34) ACACACATAATTCTTTTCTTAT 1 chr19:38336463-38336963 ( 72) TCTTGGTTTCTATTTCTCGCTT 1 chr3:32684709-32685209 ( 38) TGTTACATAATATTACAATAAC 1 chr1:151059871-151060371 ( 66) AATTTATGGATTTGAAATCTTA 1 chr4:87006773-87007273 ( 18) AATTTCTTTTCCTTTCTAACTG 1 chr10:28628223-28628723 ( 44) AGGTATATGTTCATTAAGTTCT 1 chr12:120302163-12030266 ( 69) AGGGATTCTATTTCTCCTCTTT 1 chr12:48189257-48189757 ( 79) TTTTGTTCAAAAATATTTCTTA 1 chr11:3854605-3855105 ( 75) ATTTCATTTTGCTTTCTGGCAT 1 chr18:45590012-45590512 ( 40) TGAAGCTCTCTATCTCATTTAT 1 chr1:41681565-41682065 ( 77) ACTTGGATGTTCTTTCTGACTA 1 chr10:110567295-11056779 ( 45) TGGTGGATTTCTTTTGAATCTA 1 chr22:45534313-45534813 ( 50) TGATACAGTGAGTGACATTTTT 1 chr11:111878563-11187906 ( 5) TTAGGAAGAGTTTTTCTGTTCC 1 chr1:18902465-18902965 ( 27) TATGGCACTAGAAATATTTTTT 1 chr17:7483891-7484391 ( 76) AGAATTTTTTTCTTTAATCCCA 1 chr19:45615713-45616213 ( 51) TCTGTATTTGACTTCCACTTTC 1 chr5:134371037-134371537 ( 43) ACAAATTTGTGTTCTCTGTGTT 1 chr20:50958429-50958929 ( 41) ATATTCTGGATTTATACATCTT 1 chr16:21952913-21953413 ( 76) TTATTCTCTGCATATATTTACT 1 chr15:85795373-85795873 ( 6) TTTGTGATTCTTCGTCCTTTTC 1 chr11:65134700-65135200 ( 21) AAATGTTTTCTTAAACATTTAG 1 chr20:25545142-25545642 ( 3) TGATAATGTTGATTACAAGCTT 1 chr2:218286924-218287424 ( 35) TGATATTTTAGTGTTTAGATCC 1 chr16:20900407-20900907 ( 11) TTTTCCTTTACGCTTTCATTAT 1 chr1:94325327-94325827 ( 9) TGGATCTTGGCTGTTCATTTAT 1 chr6:52352484-52352984 ( 37) TGATTTTTTTCCTGTAAGTGTC 1 chr16:23269161-23269661 ( 33) TGTTGGCTTAGTATTATTTCTA 1 chr1:235910469-235910969 ( 5) TGTATCACTGTCTTTGAAAATT 1 chr22:38283181-38283681 ( 32) AATTACTTGAGAAGACATTCTT 1 chr19:18204299-18204799 ( 78) ATTTATTTTGAACCCCATATAT 1 chr19:35930995-35931495 ( 13) AGGATCATTACATTATTCTATT 1 chr4:102825453-102825953 ( 63) AGGTACATTAGCTTTCCCTTAC 1 chr7:16645749-16646249 ( 27) TGTAGAATTTTCAATATTACAT 1 chr1:150235934-150236434 ( 39) TGTTGGTTGATTCTTCAGCGTC 1 chr1:56415250-56415750 ( 41) ATATAACTGGATTTACATTGTT 1 chr16:85821563-85822063 ( 58) GAATTTATGGAAATACTTATTT 1 chr17:35808976-35809476 ( 37) TTATTTACAATCCTATTTCTCA 1 chr1:42046752-42047252 ( 12) TTGTGGTTATTTTCTGAGCATA 1 chr7:103279887-103280387 ( 48) TACTCCTTGTTTCTTCATAATT 1 chr6:41591758-41592258 ( 38) TGTGTGTGTGTCTGTCTGTCTG 1 chr16:23729532-23730032 ( 1) GTTTTGCTTGTTTTAGTAATTA 1 chr1:27490196-27490696 ( 33) ACACACTTTGTACGAGTTTTTA 1 chr2:73213784-73214284 ( 66) TTTGTGTCTGTACCTCTGTATC 1 chr17:45147811-45148311 ( 66) TTATAAAGGCTATTATCGTATT 1 chr5:40755122-40755622 ( 41) ACTAATACTGGTTTTTCTCTTG 1 chr14:59161654-59162154 ( 8) TGGACATCTACATTTTAGTTTC 1 chr18:22604568-22605068 ( 32) ATAGTCTGTGGCTGTTTCTGTT 1 chr16:31179733-31180233 ( 16) ATATGATTATGTATAGTATTCG 1 chr10:88896876-88897376 ( 20) TAACAGTTTATTCTCTACATAA 1 chr2:43995882-43996382 ( 44) TCGTTTATGTAAATATTACATT 1 chr2:99181051-99181551 ( 71) AATTGATTTTCCCTATTGCGTA 1 chr2:85707296-85707796 ( 54) TAGGTTTGTGTGATACTATCTA 1 chr15:90420403-90420903 ( 37) TGAGATTCTATGATTATTGCTA 1 chr1:46303252-46303752 ( 39) GTATAATTGATCTAGGAGTTTA 1 chr14:56579434-56579934 ( 24) ACCTACTTATAATGTGATTTAA 1 chr20:543730-544230 ( 79) GTTGTCACTTGTTAACACTATT 1 chrX:49002173-49002673 ( 24) TAGAACGTTGTATTACAGTTCA 1 chr12:4648642-4649142 ( 53) ATAGGCTGTATAGGCTATTTAT 1 chr3:69250019-69250519 ( 79) TGTGTGTGTGTGTGTGTGTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.033 E= 7.8e-114 60 -1398 -256 161 -27 -76 -11 88 68 -356 -92 123 -75 -276 -57 161 60 -240 -48 101 45 -4 -81 35 54 -398 -556 170 -1398 -92 -124 180 -55 -456 -86 172 35 -276 14 83 -98 -186 -57 157 10 -66 -211 134 -37 -71 -324 160 -90 -157 -124 168 2 -224 -324 175 -61 58 -132 57 83 -132 -1398 130 -55 -92 -1 99 -37 -92 -240 160 -117 -117 -224 179 21 -166 -1398 168 18 -148 -176 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 162 E= 7.8e-114 0.314815 0.000000 0.049383 0.635802 0.172840 0.172840 0.271605 0.382716 0.333333 0.024691 0.154321 0.487654 0.123457 0.043210 0.197531 0.635802 0.314815 0.055556 0.209877 0.419753 0.283951 0.283951 0.166667 0.265432 0.302469 0.018519 0.006173 0.672840 0.000000 0.154321 0.123457 0.722222 0.141975 0.012346 0.160494 0.685185 0.265432 0.043210 0.320988 0.370370 0.104938 0.080247 0.197531 0.617284 0.222222 0.185185 0.067901 0.524691 0.160494 0.179012 0.030864 0.629630 0.111111 0.098765 0.123457 0.666667 0.209877 0.061728 0.030864 0.697531 0.135802 0.438272 0.117284 0.308642 0.370370 0.117284 0.000000 0.512346 0.141975 0.154321 0.290123 0.413580 0.160494 0.154321 0.055556 0.629630 0.092593 0.129630 0.061728 0.716049 0.240741 0.092593 0.000000 0.666667 0.234568 0.104938 0.086420 0.574074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWTDNTTTDTTTTTYWKTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TA][TG][TA]T[TAG][ACT][TA]TT[TGA]T[TA]TT[TA][CT][TA][TG]TT[TA][TA] -------------------------------------------------------------------------------- Time 566.04 secs. ******************************************************************************** ******************************************************************************** MOTIF BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 width = 31 sites = 113 llr = 1242 E-value = 6.6e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1212121211:112::111:2:3:12::2:: pos.-specific C 3366655634353373355537446458266 probability G 2121::::131124:::122:::21:2::2: matrix T 4422334252634226632352342532524 bits 2.3 2.0 1.8 1.6 Relative 1.4 Entropy 1.1 * (15.9 bits) 0.9 * * * * 0.7 **** * *** ** * ** * 0.5 ***** ** *** **** ******* 0.2 ************ ***************** 0.0 ------------------------------- Multilevel TTCCCCCCTCTCTGCTTCCCTCCCCTCCTCC consensus CCT TTTTCGCTCCTCCTTTCTTT CTTATT sequence GA T A A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr17:40341684-40342184 + 56 2.68e-13 ATCTGGAGcc tttcccccttcctgcttctctcctctcctcc cccttccCAG chr1:150272250-150272750 - 11 2.55e-11 ACCAAGAAGT TTCCCCTCTCCCGGCTTTCCTTCCTTCCTCC AAGGCCTCAT chr8:37693320-37693820 + 18 5.99e-10 CAGTCTGTCC TTACctcctcttctctcccttcctttccttc attcactacc chr17:29391073-29391573 + 67 8.97e-10 CGAGGTCCCC TTCCCCTCTGGTGCCTTTGCTCCTCTTCTCC TTT chr6:10414890-10415390 - 25 1.09e-09 CCTCCTTGCC CTCCTCCTCTCCCTCCTCCTTCTCCTCCTCC ACCTCCTCTC chr1:32343457-32343957 + 6 4.08e-09 ctctt tttctttctttctttttctttTCtttctttt tttgtttttg chr8:95269698-95270198 - 62 4.88e-09 TGAGCACG CATCTCTCTCTCTGTCTCTCTCTCTCTCTCT CTCGGATTTA chr9:15510879-15511379 - 57 6.94e-09 TTTCGCCCAG TCCTTTCTTCTTCGCTTGCGTCTTCCTCTCC ATCTGCATGC chr5:53478390-53478890 - 36 6.94e-09 TCTCTTTCCC CTACTCCTTCCCCTCTTCTCTCCTTCCCTCC CTCTACCCAG chr7:151252011-151252511 - 23 1.16e-08 CCTTCCTCCC TATCCCCTCGCCAGCTTCTCTTCTCTCCTTC CAGCCCCTTC chr17:2400698-2401198 + 65 1.16e-08 AGGCGGCAct gcctcccttcttcccctccctctctacctcc cttcc chr2:152717897-152718397 - 70 1.37e-08 . AACCTATTTGTCTTCTCCCTTCTTCCCCACT ACGCTCACAC chr1:32232532-32233032 - 24 1.61e-08 CTAGTCCTGG ATCATCTCTATTTACCTCCCTCTCCCCCATC CTTCATCTTT chr16:14003099-14003599 + 57 5.63e-08 AGCAGCACgc ctctgccccttccacttccctctgctcctgc TTTCTTGTCT chr17:48555935-48556435 - 68 8.75e-08 CA CCGCCCTTCCTTGCCTTTGCTCACCTCTTCC TCCCTGTCCC chr22:45279694-45280194 + 70 1.16e-07 GCAGGTGTCA GGCCCCCTTTTTCTCCTGTTTCCCCTCCACT chr21:43609456-43609956 - 22 1.16e-07 ACATCTCCAA GGCACTCTTCTCCCCTCTTTTCACCTCCCCC ACTTCACTAA chr17:7686130-7686630 + 31 1.34e-07 ACCTCCGGGC TTGCCTTCTGCACACTTCTTTCCCTCCCTGT CTCACGCCAT chr1:59393300-59393800 + 62 1.34e-07 TTCTCCTGTT TACTCCCTTTCCCACCCCATCCCCCTCCTCT CTCCCTTC chr19:10194810-10195310 - 11 1.54e-07 TGCACAGGGT ATCGCCTCTCTCCGTTTGGTACATCCCCTCC TCCCCCACGC chr16:29829489-29829989 + 5 1.76e-07 TCAT CCCCCTTCTCCTTCCTTTCCACCCTACCCTT GCTCACAACT chr17:38799769-38800269 - 27 2.02e-07 CTGGACTTTC TCTTCCCCTTGCTGCGTCCCTCCTCTCCCCC GGGGTGGGCA chr2:219500000-219500500 + 32 2.02e-07 ACCTCAGGGG CTCCCCTCTCTCACCTCACTTCCTGCTTATC TTCATGCTGT chr5:140720697-140721197 + 7 2.31e-07 cttcaa gtcgcctctttcctcctgcctttcctcttgc ctttgcaaca chr8:17155619-17156119 + 69 3.90e-07 ACAGCCAAAA ATGCTTCTTCCTCGCTCTCCACAGCCCCTCC C chr7:87934490-87934990 - 1 3.90e-07 CGCGCCTCCA CACATATATTTTTGCTCCACTTCTCACCACC chr19:40598103-40598603 + 55 4.42e-07 ACGCGCTGGA CACCCCCCTCTCTGCACCCCCCCACTGCTCT CCTCTCGGGG chr1:19596261-19596761 - 37 4.42e-07 TGTACCGCAT TCCACACAATTTTCCCTCCCTCTGATCCTCC CTGGCTCCTC chr19:49150257-49150757 + 3 4.42e-07 CC GCCCCAAACGTCCGCTTTCCTTTTCTCTACT TTGTAATTTA chr3:122384341-122384841 + 13 4.42e-07 CCCACGCGCC TACCCTTCTCCCCACCCCCGTCCTCAGCCTC CCCTGAGCTC chr9:122159390-122159890 + 28 5.02e-07 GTCCTCCGGA TAGCCTCACCTCATCTACTTTCAGCTCCTCT AGAGTGGGCA chr6:125945735-125946235 - 49 5.02e-07 GCACATTTTA ATAATCCCTGTCTCCTTAATACACCTTCTTC ATATGTTTCC chr11:73142308-73142808 - 26 5.68e-07 CCCACCCACC GACCAATCCGTTAGCTTCCCCCTTCCCCTGC CGCGGTACGA chr19:8195452-8195952 + 50 5.68e-07 CTCTGTTTTG CTCCGTTCTCTCCACTCACCTCCCACCCTGC AGCCCTGGTC chr1:181133336-181133836 - 13 5.68e-07 AGACCTGCTG TTCCCTTCTTCCCACTATACTCAGCAGCTTC AACCCCTCAC chr18:3247397-3247897 + 58 6.42e-07 ATATTCTAGG TCGCCCACTTTACACTTCCTTCTCATGCACT TGGTCAATAC chr19:45615713-45616213 - 6 7.25e-07 TTTAATCCTG TCCCCCTCTCCTTGGTTCCGCCCTCTGCAGC TCTAA chr21:42495864-42496364 + 66 7.25e-07 CAGGAGCTCT CACCCCAATATCATTCTCTCCCTCCTCCTCC AACT chr2:88627744-88628244 - 53 7.25e-07 GGCTTCTGTG GCCACTTCTTGCTGCTTCGCTTTTGCCTTCC TAAGTAGACT chr22:46013662-46014162 + 70 8.18e-07 CTGCGGTTCC AACCCCCCTCCACATTCCCGCCTGCTCCTCC chr6:42890614-42891114 - 50 8.18e-07 GGTACGGTCT ACAGCCTCCCTTTCCTTTCCCCACCTCCCCC ATGGTGGTTG chr12:53942433-53942933 + 33 8.18e-07 CTACCAGATG TTTCTTCATCTCTACATACCATTTCCTTTCC AGATAAGGCA chr17:39199947-39200447 - 70 9.21e-07 . CGTATTCCTGTCCGGTTCTTTCATCTTCTGC CACACTAAAC chr1:202709156-202709656 - 3 9.21e-07 ACTAAGCCAG GCCCCCTCATCCTGTCTCCTCCCTTTTCATC CC chr5:36690431-36690931 + 54 1.04e-06 AATTCCTCAG TGCCCCCATGTCACTTTTCCCTCTGTTCACC CTGCTTCTTC chr2:152718157-152718657 + 14 1.16e-06 CCTCCGCTCG CTTCTCCCTGCGCGCTTTCCTGCTCCCCTTT CCGGCTACAG chrX:120560654-120561154 + 47 1.16e-06 GGCCGTGCCG TCCCCCTCCCCTGCTTTTCGATCTCTCTCCC CCCCTTTCTG chr14:104689094-10468959 - 15 1.31e-06 TCCCGCCTCA GCCCCCACTGTCCGCCCCGTCCCTGCCCTCC ACCGCCTCCC chr1:57423432-57423932 - 47 1.31e-06 AAAAGGGCGA CTTCTCTTTCTCTGTCCTGCCCCCCATCCCC GCGCCCCTGT chr19:49676342-49676842 + 59 1.46e-06 AGCTATGCCC TTCCTCTCTCTGGGCCTCTCACCGATTCCGT TTTTCCCCCA chr5:38426518-38427018 - 55 1.46e-06 GCCCCTAAAA CTTCCCTCCATCCTCCATGCTCTTTCTCTCC TCTCACGTGC chr15:88638572-88639072 - 4 1.64e-06 CATGTCAGGG TGCCCCTCCTTTGCCCCGGCCCTCCCCCTCC TCA chr10:35090326-35090826 + 54 1.64e-06 CTTTGCCCAA CACACACCCTCCGGTCTCCTTCTTCCGCTGC TGCCAAATCC chr17:48814480-48814980 + 32 1.83e-06 CTTCTGAAGG ACTATACCTGTTGACTACTCTCCTCTTCCCT GGAGGTGTTG chr3:111071325-111071825 - 61 1.83e-06 AGCCCTGTC TCCTCCCACCCCGCCCTCCTACACATGCTCC TCCCCTTTCA chr5:149357470-149357970 + 53 2.54e-06 tcttcAAAGC TTCACTTTGGTCTGTTTCATCCCTCTGCCGC AGCTGGGCCC chr1:234503143-234503643 - 29 2.54e-06 CGCCTTTCCT GTTCCCAAATTTTCTCTCCCTTTTCCTTTCT GACCCTAATG chr11:65491853-65492353 - 12 2.54e-06 TCTGATGGAG CATTCACCCCTCTACCTCCTACCCGCCCCCT GCCCAGTGCA chr8:18084002-18084502 - 42 2.83e-06 AGCCTGGAAG GCTCTCTCTCTTTCTCTACGCCACCCTTTTC GTGGCACTGA chr1:222711390-222711890 - 25 3.14e-06 CAAAAGAAGG GTCTCCTCTCGCGCTCCTTCTCCACCCCTCT TTCTGGTGAG chr12:54358178-54358678 + 56 3.49e-06 ACCAAAAACC TACCTTCCTCCTGGTCTTTCCCATTAGTTCT CTGTCGCTCT chr2:85538672-85539172 + 32 3.86e-06 AGGAAGAGCA ATCCCCCACGTCTCCTCGCGTCTGCATTTTT CTCCTAGCTC chr15:82540412-82540912 + 36 3.86e-06 CCGCTCCCCG CTCCCCTCGGTTGACTTGGGCTCGCTTCTCT CCCCCATCTG chr15:70494593-70495093 - 17 4.28e-06 TCATGACCTG GCCCCACCTGCCTGCCTTTCTAACCTCTATT GCCAGCACCT chr17:38705993-38706493 - 23 4.74e-06 CCGGCCCCCT GCACAACCTCTCTCCTATCCTTAGCTCTTCC CCGGCGGATT chr17:42287180-42287680 - 66 4.74e-06 CTGG ACGCCTTCCATCCCCTTTGCCCAGCTTCCCT CTCCTCTGGG chr22:20507887-20508387 - 59 5.23e-06 CTCATCTTAC ATCCACCCTCCTCCCATCACTTTCTTTCACC GTTGATGCGC chr1:45550706-45551206 + 24 5.78e-06 GGTGGAGACG GTACTACCTCCCAGCTCTGTTTTCCATCCCC TTCAGGTCCT chr12:84911780-84912280 - 23 6.37e-06 GCAGAGAGCT TTATTCCTCATTCGCTTCCGTTCGCTTTAGC AAAGGCAGAA chr10:101130820-10113132 + 50 7.02e-06 CTTTTCCTTT TAAGCCTCGCCTTGTTCCCCTCTTCTCTCTC TTCATGAACT chr11:65134450-65134950 - 65 7.02e-06 TCCGA CTCCCCCCTGTTGCCTTATTACCTTCCGACC ACCTCTCGGA chr17:39632030-39632530 - 48 7.73e-06 CTGGTGCCCC GTGAGCCTCCCTCGCTTCCCCCACCTCCCTC ATGCCTCCTG chr6:35263469-35263969 + 18 8.49e-06 ccttgtattt gagttatttgtgtacttttctcaaccccact ctgtgagctc chrX:47365942-47366442 + 15 8.49e-06 AAGGGGGGGA TTGTACCACCCTGACTTCTTCCCCCTCTTGC CCAGTGGTGT chr19:1470830-1471330 - 64 8.49e-06 CCGGGA CTCCCCTCAGTCTCCTTTCCATTGGCCTCGC CCGCCGCGGC chr18:9136239-9136739 + 45 1.02e-05 CGCCTGCCCT GCCTCTTCGCCCAGCCTTTGATTCCCCCTCC TTTGTCGGAT chr17:4948553-4949053 - 66 1.12e-05 TTCT CCTTCCTTCCTTCTTCTGGCTCACTCCCTGC CCCGATACCA chr10:72096255-72096755 - 44 1.12e-05 TAAAGTTGTT TGCCTTTTACTTTGCTTGGTCTATCATTTTC CTACCAAAGT chr22:18001426-18001926 - 51 1.23e-05 GTGGCGACAG CTTATTTCTTTGCCTTTTGCACATATCCCGT GAGATTCTGG chr1:23558215-23558715 - 5 1.34e-05 GGCGGAAACT GACTGCTCCTTGGTCTTCTTTCCTCCCCCGC CCAG chr17:58513625-58514125 - 25 1.47e-05 CTCCTTGACT GTCCCCCAGACAGCCTCTCTTCTCCATCTTC CCTGCCTCTG chr19:49765398-49765898 + 27 1.47e-05 GCCTGGAAGG TGGGCTCTTCTCAACCTCCTTTCCATCTCCC AGGATTCAGA chr10:98134217-98134717 - 52 1.47e-05 GGAGAGCATT TCTGCTCCTGTCCCTTCAACCCTTCCTCATT CCTCTCGGCT chr19:47778274-47778774 - 65 1.60e-05 CCCGA GGCCCCCACACAAGTCTCCTTCCCATCCTCC TGTTGGGCTG chr2:46698404-46698904 + 25 1.60e-05 GAGAGACTCA TTCACATTTTCCTACTCGGCACTCACGCCCT CCATTCAGCA chr19:35248583-35249083 + 53 2.08e-05 ATCTGAAAGC ATGCCCTTTGTCCACGTCGTTTACGCTCATT AAAACTTCCA chr12:22625666-22626166 + 66 2.08e-05 CCCCTTGCAC GGGGTCCTCGTCTACCTCCTCCCCTCCCACC AGTA chr1:159924236-159924736 + 1 2.26e-05 . CACTCCATCCCCACTCTCACCCCGTTTCTCT CTGCCCCACA chr17:43398525-43399025 + 31 2.26e-05 CGTTGCCAGG CACGTTCCTTTCGCCCCTCCCACCCTCCATT CTGCATTAAT chr19:36014425-36014925 - 58 2.45e-05 TTCACTGCAT GTCCCCAAACTCAGCATGACTCCTGTCCTCT TCAATAAAGA chr2:200811461-200811961 - 13 2.45e-05 GCCTGGACAC TTGTCCTAGACTAGCTTATTTTTCTTCCCCC GCTGCGTCGT chr3:41961914-41962414 - 14 2.45e-05 AGGCTGGTCG GCTTCTTCCGCGCGTTCCGCTTTGCTTCACT GCTTTCTCCC chr11:61161669-61162169 + 36 2.45e-05 AAGGCCACCA CACACTCATTTCCATTTACTAGTTAATCTCT TTCCCCCACC chr19:48638254-48638754 - 36 2.45e-05 CTTACGCTGT TCCACAATCTGATGCTCCCTTCCCCCTTACT GAGAATCTAC chr5:160165463-160165963 + 30 2.45e-05 ccttgccgag catccactctgctccttctgttagcagcacc ctagttatcc chr19:44915023-44915523 + 68 2.45e-05 GCCCCACCAG GTCACTCCAGTATTCCTCCCCAttctttttt tt chr19:18204299-18204799 - 35 2.89e-05 GAGGGTATAA AACATCTCTTGGGCCTCGATTTTTCTTTTCT GCAATTGGGA chr4:41256554-41257054 + 55 3.13e-05 GGGGGGTTCG TACCCATCTGGCCGCGACCGTCCGTTTCCCC CTCGCTTGGT chr5:141040792-141041292 - 25 3.13e-05 CCTGTGGTTG TTTTTCTCTCTCTACTCTCCAGAATCTCAGT GACTCGTAAA chr2:95165692-95166192 - 44 3.67e-05 GCCTCGCCCG TGTCACCCCGTTTTGCTCCCACAGCACCTCC CCAAAGTTCT chr9:128191524-128192024 + 1 3.67e-05 . CTCATACCCTCTGTCCCGCGTCCTCCGCATC GCGAAGGGGA chr11:57741109-57741609 + 2 3.67e-05 T CACCATCCCAGCGTCCCCTGTCCCCTCCACC CGAAGCGATG chr1:236284293-236284793 + 48 4.28e-05 CTCATTCTGA CTGATTTACCTCTGCTTTCCCTAAAATCAGC TACACTGAAA chrX:23937118-23937618 + 42 4.28e-05 aagggacata ttaattctcgggcacttttgacctcccctgc acatgggctt chrX:23743241-23743741 + 70 4.28e-05 CTAGTGGAGC TTGTCTCCTTTATCCTTGATCCCCGCGCCTT chr2:230865850-230866350 - 44 4.62e-05 CAGCTCTCCC TCCCTCCCTGTCCCTGCCCGCCACGCGTTCT GCCCCCTGCG chr16:4624290-4624790 - 27 4.99e-05 CTGCACTAAC ATATTAACTCTTTGGTCATTTCCTCATCTGT TCGCTTACAG chr21:26846422-26846922 + 68 5.78e-05 ACTGGTCTCC GCCTTTCCGCCCCACTCCCGTCCGGTCTCTT GG chr12:56333645-56334145 - 43 6.69e-05 GCGCTTGCGC TCCCCCTACTCGTTCTAATTCCACGCGCTCC AAAATATCCG chr1:31938370-31938870 + 65 6.69e-05 GGGGAGTCGC TCGCCCACGCTGCGCCCCGCCCATCCGCACC TGGGC chr3:136193199-136193699 + 49 8.85e-05 GTGGGCCCTT CCTCTTCCCCCTACCTCACCATAGTAGCACC CTACGGCCGG chr19:17075296-17075796 - 16 9.48e-05 TTAGCCGGCG CTGCCTCACGCCTCGCAGCCACCCCTCCTGC GTCTCCACAA chr20:47360958-47361458 - 43 1.08e-04 TCTGCTCCTG CATCCCTTGCTCGGCGCCCCACCCGCGCTGT GGCCATCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:40341684-40342184 2.7e-13 55_[+2]_14 chr1:150272250-150272750 2.6e-11 10_[-2]_59 chr8:37693320-37693820 6e-10 17_[+2]_52 chr17:29391073-29391573 9e-10 66_[+2]_3 chr6:10414890-10415390 1.1e-09 24_[-2]_45 chr1:32343457-32343957 4.1e-09 5_[+2]_64 chr8:95269698-95270198 4.9e-09 61_[-2]_8 chr9:15510879-15511379 6.9e-09 56_[-2]_13 chr5:53478390-53478890 6.9e-09 35_[-2]_34 chr7:151252011-151252511 1.2e-08 22_[-2]_47 chr17:2400698-2401198 1.2e-08 64_[+2]_5 chr2:152717897-152718397 1.4e-08 69_[-2] chr1:32232532-32233032 1.6e-08 23_[-2]_46 chr16:14003099-14003599 5.6e-08 56_[+2]_13 chr17:48555935-48556435 8.8e-08 67_[-2]_2 chr22:45279694-45280194 1.2e-07 69_[+2] chr21:43609456-43609956 1.2e-07 21_[-2]_48 chr17:7686130-7686630 1.3e-07 30_[+2]_39 chr1:59393300-59393800 1.3e-07 61_[+2]_8 chr19:10194810-10195310 1.5e-07 10_[-2]_59 chr16:29829489-29829989 1.8e-07 4_[+2]_65 chr17:38799769-38800269 2e-07 26_[-2]_43 chr2:219500000-219500500 2e-07 31_[+2]_38 chr5:140720697-140721197 2.3e-07 6_[+2]_63 chr8:17155619-17156119 3.9e-07 68_[+2]_1 chr7:87934490-87934990 3.9e-07 [-2]_69 chr19:40598103-40598603 4.4e-07 54_[+2]_15 chr1:19596261-19596761 4.4e-07 36_[-2]_33 chr19:49150257-49150757 4.4e-07 2_[+2]_67 chr3:122384341-122384841 4.4e-07 12_[+2]_57 chr9:122159390-122159890 5e-07 27_[+2]_42 chr6:125945735-125946235 5e-07 48_[-2]_21 chr11:73142308-73142808 5.7e-07 25_[-2]_44 chr19:8195452-8195952 5.7e-07 49_[+2]_20 chr1:181133336-181133836 5.7e-07 12_[-2]_57 chr18:3247397-3247897 6.4e-07 57_[+2]_12 chr19:45615713-45616213 7.3e-07 5_[-2]_64 chr21:42495864-42496364 7.3e-07 65_[+2]_4 chr2:88627744-88628244 7.3e-07 52_[-2]_17 chr22:46013662-46014162 8.2e-07 69_[+2] chr6:42890614-42891114 8.2e-07 49_[-2]_20 chr12:53942433-53942933 8.2e-07 32_[+2]_37 chr17:39199947-39200447 9.2e-07 69_[-2] chr1:202709156-202709656 9.2e-07 2_[-2]_67 chr5:36690431-36690931 1e-06 53_[+2]_16 chr2:152718157-152718657 1.2e-06 13_[+2]_56 chrX:120560654-120561154 1.2e-06 46_[+2]_23 chr14:104689094-10468959 1.3e-06 14_[-2]_55 chr1:57423432-57423932 1.3e-06 46_[-2]_23 chr19:49676342-49676842 1.5e-06 58_[+2]_11 chr5:38426518-38427018 1.5e-06 54_[-2]_15 chr15:88638572-88639072 1.6e-06 3_[-2]_66 chr10:35090326-35090826 1.6e-06 53_[+2]_16 chr17:48814480-48814980 1.8e-06 31_[+2]_38 chr3:111071325-111071825 1.8e-06 60_[-2]_9 chr5:149357470-149357970 2.5e-06 52_[+2]_17 chr1:234503143-234503643 2.5e-06 28_[-2]_41 chr11:65491853-65492353 2.5e-06 11_[-2]_58 chr8:18084002-18084502 2.8e-06 41_[-2]_28 chr1:222711390-222711890 3.1e-06 24_[-2]_45 chr12:54358178-54358678 3.5e-06 55_[+2]_14 chr2:85538672-85539172 3.9e-06 31_[+2]_38 chr15:82540412-82540912 3.9e-06 35_[+2]_34 chr15:70494593-70495093 4.3e-06 16_[-2]_53 chr17:38705993-38706493 4.7e-06 22_[-2]_47 chr17:42287180-42287680 4.7e-06 65_[-2]_4 chr22:20507887-20508387 5.2e-06 58_[-2]_11 chr1:45550706-45551206 5.8e-06 23_[+2]_46 chr12:84911780-84912280 6.4e-06 22_[-2]_47 chr10:101130820-10113132 7e-06 49_[+2]_20 chr11:65134450-65134950 7e-06 64_[-2]_5 chr17:39632030-39632530 7.7e-06 47_[-2]_22 chr6:35263469-35263969 8.5e-06 17_[+2]_52 chrX:47365942-47366442 8.5e-06 14_[+2]_55 chr19:1470830-1471330 8.5e-06 63_[-2]_6 chr18:9136239-9136739 1e-05 44_[+2]_25 chr17:4948553-4949053 1.1e-05 65_[-2]_4 chr10:72096255-72096755 1.1e-05 43_[-2]_26 chr22:18001426-18001926 1.2e-05 50_[-2]_19 chr1:23558215-23558715 1.3e-05 4_[-2]_65 chr17:58513625-58514125 1.5e-05 24_[-2]_45 chr19:49765398-49765898 1.5e-05 26_[+2]_43 chr10:98134217-98134717 1.5e-05 51_[-2]_18 chr19:47778274-47778774 1.6e-05 64_[-2]_5 chr2:46698404-46698904 1.6e-05 24_[+2]_45 chr19:35248583-35249083 2.1e-05 52_[+2]_17 chr12:22625666-22626166 2.1e-05 65_[+2]_4 chr1:159924236-159924736 2.3e-05 [+2]_69 chr17:43398525-43399025 2.3e-05 30_[+2]_39 chr19:36014425-36014925 2.5e-05 57_[-2]_12 chr2:200811461-200811961 2.5e-05 12_[-2]_57 chr3:41961914-41962414 2.5e-05 13_[-2]_56 chr11:61161669-61162169 2.5e-05 35_[+2]_34 chr19:48638254-48638754 2.5e-05 35_[-2]_34 chr5:160165463-160165963 2.5e-05 29_[+2]_40 chr19:44915023-44915523 2.5e-05 67_[+2]_2 chr19:18204299-18204799 2.9e-05 34_[-2]_35 chr4:41256554-41257054 3.1e-05 54_[+2]_15 chr5:141040792-141041292 3.1e-05 24_[-2]_45 chr2:95165692-95166192 3.7e-05 43_[-2]_26 chr9:128191524-128192024 3.7e-05 [+2]_69 chr11:57741109-57741609 3.7e-05 1_[+2]_68 chr1:236284293-236284793 4.3e-05 47_[+2]_22 chrX:23937118-23937618 4.3e-05 41_[+2]_28 chrX:23743241-23743741 4.3e-05 69_[+2] chr2:230865850-230866350 4.6e-05 43_[-2]_26 chr16:4624290-4624790 5e-05 26_[-2]_43 chr21:26846422-26846922 5.8e-05 67_[+2]_2 chr12:56333645-56334145 6.7e-05 42_[-2]_27 chr1:31938370-31938870 6.7e-05 64_[+2]_5 chr3:136193199-136193699 8.9e-05 48_[+2]_21 chr19:17075296-17075796 9.5e-05 15_[-2]_54 chr20:47360958-47361458 0.00011 42_[-2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY width=31 seqs=113 chr17:40341684-40342184 ( 56) TTTCCCCCTTCCTGCTTCTCTCCTCTCCTCC 1 chr1:150272250-150272750 ( 11) TTCCCCTCTCCCGGCTTTCCTTCCTTCCTCC 1 chr8:37693320-37693820 ( 18) TTACCTCCTCTTCTCTCCCTTCCTTTCCTTC 1 chr17:29391073-29391573 ( 67) TTCCCCTCTGGTGCCTTTGCTCCTCTTCTCC 1 chr6:10414890-10415390 ( 25) CTCCTCCTCTCCCTCCTCCTTCTCCTCCTCC 1 chr1:32343457-32343957 ( 6) TTTCTTTCTTTCTTTTTCTTTTCTTTCTTTT 1 chr8:95269698-95270198 ( 62) CATCTCTCTCTCTGTCTCTCTCTCTCTCTCT 1 chr9:15510879-15511379 ( 57) TCCTTTCTTCTTCGCTTGCGTCTTCCTCTCC 1 chr5:53478390-53478890 ( 36) CTACTCCTTCCCCTCTTCTCTCCTTCCCTCC 1 chr7:151252011-151252511 ( 23) TATCCCCTCGCCAGCTTCTCTTCTCTCCTTC 1 chr17:2400698-2401198 ( 65) GCCTCCCTTCTTCCCCTCCCTCTCTACCTCC 1 chr2:152717897-152718397 ( 70) AACCTATTTGTCTTCTCCCTTCTTCCCCACT 1 chr1:32232532-32233032 ( 24) ATCATCTCTATTTACCTCCCTCTCCCCCATC 1 chr16:14003099-14003599 ( 57) CTCTGCCCCTTCCACTTCCCTCTGCTCCTGC 1 chr17:48555935-48556435 ( 68) CCGCCCTTCCTTGCCTTTGCTCACCTCTTCC 1 chr22:45279694-45280194 ( 70) GGCCCCCTTTTTCTCCTGTTTCCCCTCCACT 1 chr21:43609456-43609956 ( 22) GGCACTCTTCTCCCCTCTTTTCACCTCCCCC 1 chr17:7686130-7686630 ( 31) TTGCCTTCTGCACACTTCTTTCCCTCCCTGT 1 chr1:59393300-59393800 ( 62) TACTCCCTTTCCCACCCCATCCCCCTCCTCT 1 chr19:10194810-10195310 ( 11) ATCGCCTCTCTCCGTTTGGTACATCCCCTCC 1 chr16:29829489-29829989 ( 5) CCCCCTTCTCCTTCCTTTCCACCCTACCCTT 1 chr17:38799769-38800269 ( 27) TCTTCCCCTTGCTGCGTCCCTCCTCTCCCCC 1 chr2:219500000-219500500 ( 32) CTCCCCTCTCTCACCTCACTTCCTGCTTATC 1 chr5:140720697-140721197 ( 7) GTCGCCTCTTTCCTCCTGCCTTTCCTCTTGC 1 chr8:17155619-17156119 ( 69) ATGCTTCTTCCTCGCTCTCCACAGCCCCTCC 1 chr7:87934490-87934990 ( 1) CACATATATTTTTGCTCCACTTCTCACCACC 1 chr19:40598103-40598603 ( 55) CACCCCCCTCTCTGCACCCCCCCACTGCTCT 1 chr1:19596261-19596761 ( 37) TCCACACAATTTTCCCTCCCTCTGATCCTCC 1 chr19:49150257-49150757 ( 3) GCCCCAAACGTCCGCTTTCCTTTTCTCTACT 1 chr3:122384341-122384841 ( 13) TACCCTTCTCCCCACCCCCGTCCTCAGCCTC 1 chr9:122159390-122159890 ( 28) TAGCCTCACCTCATCTACTTTCAGCTCCTCT 1 chr6:125945735-125946235 ( 49) ATAATCCCTGTCTCCTTAATACACCTTCTTC 1 chr11:73142308-73142808 ( 26) GACCAATCCGTTAGCTTCCCCCTTCCCCTGC 1 chr19:8195452-8195952 ( 50) CTCCGTTCTCTCCACTCACCTCCCACCCTGC 1 chr1:181133336-181133836 ( 13) TTCCCTTCTTCCCACTATACTCAGCAGCTTC 1 chr18:3247397-3247897 ( 58) TCGCCCACTTTACACTTCCTTCTCATGCACT 1 chr19:45615713-45616213 ( 6) TCCCCCTCTCCTTGGTTCCGCCCTCTGCAGC 1 chr21:42495864-42496364 ( 66) CACCCCAATATCATTCTCTCCCTCCTCCTCC 1 chr2:88627744-88628244 ( 53) GCCACTTCTTGCTGCTTCGCTTTTGCCTTCC 1 chr22:46013662-46014162 ( 70) AACCCCCCTCCACATTCCCGCCTGCTCCTCC 1 chr6:42890614-42891114 ( 50) ACAGCCTCCCTTTCCTTTCCCCACCTCCCCC 1 chr12:53942433-53942933 ( 33) TTTCTTCATCTCTACATACCATTTCCTTTCC 1 chr17:39199947-39200447 ( 70) CGTATTCCTGTCCGGTTCTTTCATCTTCTGC 1 chr1:202709156-202709656 ( 3) GCCCCCTCATCCTGTCTCCTCCCTTTTCATC 1 chr5:36690431-36690931 ( 54) TGCCCCCATGTCACTTTTCCCTCTGTTCACC 1 chr2:152718157-152718657 ( 14) CTTCTCCCTGCGCGCTTTCCTGCTCCCCTTT 1 chrX:120560654-120561154 ( 47) TCCCCCTCCCCTGCTTTTCGATCTCTCTCCC 1 chr14:104689094-10468959 ( 15) GCCCCCACTGTCCGCCCCGTCCCTGCCCTCC 1 chr1:57423432-57423932 ( 47) CTTCTCTTTCTCTGTCCTGCCCCCCATCCCC 1 chr19:49676342-49676842 ( 59) TTCCTCTCTCTGGGCCTCTCACCGATTCCGT 1 chr5:38426518-38427018 ( 55) CTTCCCTCCATCCTCCATGCTCTTTCTCTCC 1 chr15:88638572-88639072 ( 4) TGCCCCTCCTTTGCCCCGGCCCTCCCCCTCC 1 chr10:35090326-35090826 ( 54) CACACACCCTCCGGTCTCCTTCTTCCGCTGC 1 chr17:48814480-48814980 ( 32) ACTATACCTGTTGACTACTCTCCTCTTCCCT 1 chr3:111071325-111071825 ( 61) TCCTCCCACCCCGCCCTCCTACACATGCTCC 1 chr5:149357470-149357970 ( 53) TTCACTTTGGTCTGTTTCATCCCTCTGCCGC 1 chr1:234503143-234503643 ( 29) GTTCCCAAATTTTCTCTCCCTTTTCCTTTCT 1 chr11:65491853-65492353 ( 12) CATTCACCCCTCTACCTCCTACCCGCCCCCT 1 chr8:18084002-18084502 ( 42) GCTCTCTCTCTTTCTCTACGCCACCCTTTTC 1 chr1:222711390-222711890 ( 25) GTCTCCTCTCGCGCTCCTTCTCCACCCCTCT 1 chr12:54358178-54358678 ( 56) TACCTTCCTCCTGGTCTTTCCCATTAGTTCT 1 chr2:85538672-85539172 ( 32) ATCCCCCACGTCTCCTCGCGTCTGCATTTTT 1 chr15:82540412-82540912 ( 36) CTCCCCTCGGTTGACTTGGGCTCGCTTCTCT 1 chr15:70494593-70495093 ( 17) GCCCCACCTGCCTGCCTTTCTAACCTCTATT 1 chr17:38705993-38706493 ( 23) GCACAACCTCTCTCCTATCCTTAGCTCTTCC 1 chr17:42287180-42287680 ( 66) ACGCCTTCCATCCCCTTTGCCCAGCTTCCCT 1 chr22:20507887-20508387 ( 59) ATCCACCCTCCTCCCATCACTTTCTTTCACC 1 chr1:45550706-45551206 ( 24) GTACTACCTCCCAGCTCTGTTTTCCATCCCC 1 chr12:84911780-84912280 ( 23) TTATTCCTCATTCGCTTCCGTTCGCTTTAGC 1 chr10:101130820-10113132 ( 50) TAAGCCTCGCCTTGTTCCCCTCTTCTCTCTC 1 chr11:65134450-65134950 ( 65) CTCCCCCCTGTTGCCTTATTACCTTCCGACC 1 chr17:39632030-39632530 ( 48) GTGAGCCTCCCTCGCTTCCCCCACCTCCCTC 1 chr6:35263469-35263969 ( 18) GAGTTATTTGTGTACTTTTCTCAACCCCACT 1 chrX:47365942-47366442 ( 15) TTGTACCACCCTGACTTCTTCCCCCTCTTGC 1 chr19:1470830-1471330 ( 64) CTCCCCTCAGTCTCCTTTCCATTGGCCTCGC 1 chr18:9136239-9136739 ( 45) GCCTCTTCGCCCAGCCTTTGATTCCCCCTCC 1 chr17:4948553-4949053 ( 66) CCTTCCTTCCTTCTTCTGGCTCACTCCCTGC 1 chr10:72096255-72096755 ( 44) TGCCTTTTACTTTGCTTGGTCTATCATTTTC 1 chr22:18001426-18001926 ( 51) CTTATTTCTTTGCCTTTTGCACATATCCCGT 1 chr1:23558215-23558715 ( 5) GACTGCTCCTTGGTCTTCTTTCCTCCCCCGC 1 chr17:58513625-58514125 ( 25) GTCCCCCAGACAGCCTCTCTTCTCCATCTTC 1 chr19:49765398-49765898 ( 27) TGGGCTCTTCTCAACCTCCTTTCCATCTCCC 1 chr10:98134217-98134717 ( 52) TCTGCTCCTGTCCCTTCAACCCTTCCTCATT 1 chr19:47778274-47778774 ( 65) GGCCCCCACACAAGTCTCCTTCCCATCCTCC 1 chr2:46698404-46698904 ( 25) TTCACATTTTCCTACTCGGCACTCACGCCCT 1 chr19:35248583-35249083 ( 53) ATGCCCTTTGTCCACGTCGTTTACGCTCATT 1 chr12:22625666-22626166 ( 66) GGGGTCCTCGTCTACCTCCTCCCCTCCCACC 1 chr1:159924236-159924736 ( 1) CACTCCATCCCCACTCTCACCCCGTTTCTCT 1 chr17:43398525-43399025 ( 31) CACGTTCCTTTCGCCCCTCCCACCCTCCATT 1 chr19:36014425-36014925 ( 58) GTCCCCAAACTCAGCATGACTCCTGTCCTCT 1 chr2:200811461-200811961 ( 13) TTGTCCTAGACTAGCTTATTTTTCTTCCCCC 1 chr3:41961914-41962414 ( 14) GCTTCTTCCGCGCGTTCCGCTTTGCTTCACT 1 chr11:61161669-61162169 ( 36) CACACTCATTTCCATTTACTAGTTAATCTCT 1 chr19:48638254-48638754 ( 36) TCCACAATCTGATGCTCCCTTCCCCCTTACT 1 chr5:160165463-160165963 ( 30) CATCCACTCTGCTCCTTCTGTTAGCAGCACC 1 chr19:44915023-44915523 ( 68) GTCACTCCAGTATTCCTCCCCATTCTTTTTT 1 chr19:18204299-18204799 ( 35) AACATCTCTTGGGCCTCGATTTTTCTTTTCT 1 chr4:41256554-41257054 ( 55) TACCCATCTGGCCGCGACCGTCCGTTTCCCC 1 chr5:141040792-141041292 ( 25) TTTTTCTCTCTCTACTCTCCAGAATCTCAGT 1 chr2:95165692-95166192 ( 44) TGTCACCCCGTTTTGCTCCCACAGCACCTCC 1 chr9:128191524-128192024 ( 1) CTCATACCCTCTGTCCCGCGTCCTCCGCATC 1 chr11:57741109-57741609 ( 2) CACCATCCCAGCGTCCCCTGTCCCCTCCACC 1 chr1:236284293-236284793 ( 48) CTGATTTACCTCTGCTTTCCCTAAAATCAGC 1 chrX:23937118-23937618 ( 42) TTAATTCTCGGGCACTTTTGACCTCCCCTGC 1 chrX:23743241-23743741 ( 70) TTGTCTCCTTTATCCTTGATCCCCGCGCCTT 1 chr2:230865850-230866350 ( 44) TCCCTCCCTGTCCCTGCCCGCCACGCGTTCT 1 chr16:4624290-4624790 ( 27) ATATTAACTCTTTGGTCATTTCCTCATCTGT 1 chr21:26846422-26846922 ( 68) GCCTTTCCGCCCCACTCCCGTCCGGTCTCTT 1 chr12:56333645-56334145 ( 43) TCCCCCTACTCGTTCTAATTCCACGCGCTCC 1 chr1:31938370-31938870 ( 65) TCGCCCACGCTGCGCCCCGCCCATCCGCACC 1 chr3:136193199-136193699 ( 49) CCTCTTCCCCCTACCTCACCATAGTAGCACC 1 chr19:17075296-17075796 ( 16) CTGCCTCACGCCTCGCAGCCACCCCTCCTGC 1 chr20:47360958-47361458 ( 43) CATCCCTTGCTCGGCGCCCCACCCGCGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 10.2112 E= 6.6e-080 -75 -5 -35 80 9 -14 -172 103 -123 93 -96 -3 -23 95 -205 -16 -197 106 -304 53 -38 91 -1346 49 -123 71 -1346 106 -30 102 -1346 20 -175 8 -188 140 -138 51 -19 25 -1346 16 -172 149 -155 88 -172 53 -75 20 -65 77 -3 0 28 -47 -1346 135 -272 3 -255 16 -272 151 -155 4 -1346 160 -97 79 -114 31 -109 79 -88 20 -1346 84 -96 66 -16 -14 -1346 140 -297 128 -346 20 31 60 -1346 53 -223 41 -72 91 -109 106 -135 -23 -47 31 -1346 123 -1346 86 -88 58 -1346 140 -504 9 25 -46 -1346 138 -1346 100 -59 9 -1346 112 -1346 80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 113 E= 6.6e-080 0.123894 0.283186 0.230088 0.362832 0.221239 0.265487 0.088496 0.424779 0.088496 0.557522 0.150442 0.203540 0.176991 0.566372 0.070796 0.185841 0.053097 0.610619 0.035398 0.300885 0.159292 0.548673 0.000000 0.292035 0.088496 0.477876 0.000000 0.433628 0.168142 0.592920 0.000000 0.238938 0.061947 0.309735 0.079646 0.548673 0.079646 0.415929 0.256637 0.247788 0.000000 0.327434 0.088496 0.584071 0.070796 0.539823 0.088496 0.300885 0.123894 0.336283 0.185841 0.353982 0.203540 0.292035 0.353982 0.150442 0.000000 0.743363 0.044248 0.212389 0.035398 0.327434 0.044248 0.592920 0.070796 0.300885 0.000000 0.628319 0.106195 0.504425 0.132743 0.256637 0.097345 0.504425 0.159292 0.238938 0.000000 0.522124 0.150442 0.327434 0.185841 0.265487 0.000000 0.548673 0.026549 0.707965 0.026549 0.238938 0.256637 0.442478 0.000000 0.300885 0.044248 0.389381 0.176991 0.389381 0.097345 0.610619 0.115044 0.176991 0.150442 0.362832 0.000000 0.486726 0.000000 0.530973 0.159292 0.309735 0.000000 0.769912 0.008850 0.221239 0.247788 0.212389 0.000000 0.539823 0.000000 0.584071 0.194690 0.221239 0.000000 0.637168 0.000000 0.362832 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHCCCYYCYBYYBVCYTYCYTCHYCYYCTCY MEME-2 regular expression -------------------------------------------------------------------------------- [TCG][TCA][CT]C[CT][CT][CT][CT][TC][CGT][TC][CT][TC][GCA][CT][TC][TC][CT][CT][CT][TC][CT][CTA][CT]C[TC][CT][CT][TAC][CT][CT] -------------------------------------------------------------------------------- Time 1059.22 secs. ******************************************************************************** ******************************************************************************** MOTIF YYCYSYCHCCDCCCCCHMCCCH MEME-3 width = 22 sites = 71 llr = 739 E-value = 4.5e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::11::4124:122133::14 pos.-specific C 3585459468:9666646a783 probability G 2:2:411:2:3:2113::::1: matrix T 44:414:21:41112:32:3:3 bits 2.3 2.0 1.8 1.6 * Relative 1.4 * * * Entropy 1.1 * * * ** (15.0 bits) 0.9 * * * * ** 0.7 *** * *** **** 0.5 *** ********* ******* 0.2 ********************** 0.0 ---------------------- Multilevel TCCCCCCCCCTCCCCCCCCCCA consensus CT TGT AG A G GAA T T sequence T G T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr16:15642677-15643177 + 15 3.20e-08 TTAGCTAACC TCCCCTCTCCACCACCATCCCA CCAGCAATAG chr17:2338014-2338514 + 51 3.85e-08 ACACCTCAGT TTCTCCCTCCACGCCCACCTCC TTAGCCAGGG chr12:22625666-22626166 + 1 5.50e-08 . TTGCCCCTCCTCCCACTCCCCA GTCCACGGTC chr19:44915023-44915523 - 1 1.49e-07 CAGCACTGAC CTCTCCCAGAGCCCCCCACCCA chr19:39403243-39403743 - 75 1.74e-07 ACTG GTCCTCCACCTCCCCAAACCCA CAGACCTGGG chr5:141618940-141619440 - 59 2.03e-07 AGCTGCACCG CCCACTCACCACCCCCCCCCAC GTGGGTCCGA chr19:12789884-12790384 - 56 3.16e-07 CGCGGCAGCC TCCAGCCACCATCCTCTCCCCT CAAGCAATGG chr6:10414890-10415390 - 76 3.16e-07 CTC CTCCTCCTCCTCGCCCTCCTCT TCCTCCTCCT chr6:37819054-37819554 + 50 3.65e-07 GGCTCTCGTT TTCTCCCACAGCCCCGCACTCC GCCTTTGAGG chr2:60555180-60555680 - 4 5.53e-07 GGCCATGGCG ACCCGTCTCCACCCTGCACCCT CCG chr6:43771512-43772012 - 35 5.53e-07 CCCTCCTGCG CCCTGCCCCCTCCACGCTCTCT GCCCTCCCGC chr19:10418198-10418698 + 54 6.32e-07 TCTGGCCGGC CCCTGCCCCCATGCCCTCCTCT GGTCACCGCT chr19:14253943-14254443 - 4 6.32e-07 AGAAGGGGGT TCCTCCCCCATCCCACTCCCGT TTC chr14:75543659-75544159 + 15 8.22e-07 gctcaagcga tcctctcacctcggcctcccaa agtgctggga chr11:57741109-57741609 + 61 8.22e-07 CGTCAGGCGC TTCCCGCACCTTCCCGCTCCCT GCTTGCAAAG chr1:30034574-30035074 + 79 9.35e-07 AGCGAGACCC GTGTGGCACCACCCCACCCCCA chr19:48510587-48511087 + 34 1.06e-06 AAACTGGGAC CCCCGCCACCTCATCCCACCCC ATCCCCTCAC chr1:200891142-200891642 + 35 1.20e-06 CGAGCGGCTG CTCCCGCAGCTCGCTCACCCCT GCGGGTACGT chr1:53740512-53741012 + 31 1.36e-06 CAGTGCCTGC ACCCCCCACCACCACATACTCT TGTGGagtca chr15:68229709-68230209 - 58 1.36e-06 CAGGTCGCTA CCCCGCCCCAGCCCAACACCCA GGCCTCAGTC chr1:155562835-155563335 + 73 1.53e-06 TGCGGCTCGC CTCCCTCTGCTCCTCCTCCTCC GCCGGA chrX:48897850-48898350 + 77 1.53e-06 GAGGAAGTGC TGCCCTCTGCTCCCCCATCCCA GC chr17:41734535-41735035 - 28 1.72e-06 CTGTGCTCTG TTCCGTCACCACTAGCTCCCCT CCCGCGCGGC chr19:2309499-2309999 + 78 1.72e-06 ACCTTGCCCT GTCTGCCCCCTTCACCCACTCT G chr19:42302339-42302839 - 73 1.94e-06 TGGATG GTCTCGCCTCTCCCTCCCCCCA CCCCGTGCCG chr1:156082406-156082906 - 71 2.18e-06 ACTACCCC TTCTCCCCGCACCCTCCCCTTA AAAAATTAGG chr16:30021180-30021680 - 43 2.73e-06 CATCTCCCAT CTCTGCCACCTCCCAACAGCCA TTTCCACTCC chr15:84653907-84654407 + 48 2.73e-06 AGGATCCCCA ACGTGCCTCCACCCACACCCAT CCGCCCGCCA chrX:119693091-119693591 - 13 2.73e-06 GGCGCGTTAA ATCCGCCCCCTCTCCATACCCT ACTTTCAAGG chr1:156114080-156114580 + 24 3.05e-06 ACTGATGGGC ACCAGCCTCAGCCCTCCCCCCA CTTTCCTGGC chr19:40284930-40285430 - 13 3.79e-06 GCGCCAGCGC GTGTCCCCGAACGCCCCCCCCA CGATGGTCGC chr1:236280951-236281451 + 51 4.21e-06 TCGAGTGAAG TCTTGCCCCCTCCCAATCCCCT GCGCCTGGCG chr15:70494593-70495093 + 65 4.67e-06 TGATTCCCCC ACCTTCCCCCACAACACCCCCT GGGAGGAAGG chr5:168794271-168794771 - 15 4.67e-06 GACGGCACCA TTGCATCACCGCCCTCATCCCC ACCATGTGAC chr16:68645654-68646154 - 47 5.74e-06 CTGCCCAGCC TTCTCCGTCAGCCACCACCCCC AATCCCAGCC chr3:13648331-13648831 - 78 6.34e-06 A TCCTCTCCCCACTTGGTCCCCA CAGACCTCTG chr17:7483891-7484391 - 54 6.34e-06 TTTAATCCCA CCGCCTCTCCTCGCTGCTCCCT TTTGCACTGA chr16:587807-588307 + 34 6.34e-06 cctcaggtga tccacccacctcagcctcccaa agtgctggga chr2:219500000-219500500 + 77 7.00e-06 TGCTGTTTCC CCCTTTCCCAACCATGAACTCT TC chr1:54407228-54407728 + 66 7.72e-06 GCTGACTCCT TTCTGCCCACGCCGAGAACCCA GAAGACACAC chr6:31497604-31498104 - 28 8.50e-06 CCTGTCGCCC TCCCTGCATCGCGACCACCCCA TCCCCGCATT chr12:84911780-84912280 + 67 8.50e-06 TCTCTGCTCT CCCCGCCCCATCGCCCACCTGC ACGAGGTTTA chr3:44338321-44338821 - 35 8.50e-06 AGCTGGGCCC TCCCGGCTCCACCTGCCCCCAA CACCCTCCCC chr18:49813459-49813959 - 41 8.50e-06 GCGCGTTGTG GTCTATCCGAGCCCCGTCCCCT GGGCTCCCTC chr17:68102451-68102951 - 62 8.50e-06 ATACTTAGAA TTGTACCCTCTCCGCCCCCCCA CCAAAAAAAA chr6:125749751-125750251 - 45 9.35e-06 CCAACTCACG CTCTGCGAGCGCCCACCACTCA AACTTTCTCA chr14:93043330-93043830 + 24 9.35e-06 CAGGGCAGCC TCCCTGCCCCGCCCAGCCCCAC CTACATGAAG chr19:44212354-44212854 - 19 1.03e-05 GGGTGCAGGG CTGACTCACCTCCCGGACCCAA AAGATGGTGG chr3:69250019-69250519 - 16 1.13e-05 CCCTCAATGA GTCTCTCCACACCCCCCACTTT CCCCTGCAAT chr10:97318871-97319371 + 65 1.23e-05 TCAGAAGGCA GTCCGGCTTCACCCAGACCCCC AATCCCACAG chr19:36378822-36379322 + 30 1.35e-05 GCACCCGGCG CCCAGTCAGCGCCACAAACTCC ACAGCTACTG chr19:57814570-57815070 + 74 1.35e-05 ACCTCCTGGA TCCAGTCACCACCACGGTCCCA ACACA chr14:21526225-21526725 - 8 1.35e-05 AGCTCTGAGC TCCCGCCCCCACGCCCCCGCTA GCGCTCC chr19:42216878-42217378 + 68 1.48e-05 CCGGGCAGGG CCGCTCCCGCACCCCCAACCGC CTCGGCCTCC chr20:33993476-33993976 + 65 1.48e-05 CTCCTCGTGC TCGTGTCACCGTGTCCTTCCCA GGAGACAGAG chr19:10332809-10333309 + 12 1.61e-05 TCCGCCCCCT TCCATTCCCCGCCCGCTTCCAT CACTTGGTGT chr1:15617800-15618300 - 1 1.61e-05 GTTCTCCGCT CCCTCTCCTCGTACCCCACCCC chr1:172532365-172532865 + 2 1.61e-05 C TTCCCTCACAACACACACGTCA TTCTAGGCCA chr19:49850641-49851141 + 45 1.76e-05 TCCGGATGAG GTCTCCCGCCGTCCCGACCCCC GCAAGGGGCC chr11:73142308-73142808 - 59 1.76e-05 CGTGGCGCTG GCGTTTCTACACCTCCCACCCA CCGACCAATC chrX:49163821-49164321 - 45 1.91e-05 AACCCCAAGG CTCCTCCCACTCGAAGCACCCT CCGATCCCCG chr10:104274753-10427525 - 11 2.26e-05 TGTCACGCGG CGCCCCCAGCTCGCGGACCCCA TGGAGAGCAC chr1:109484161-109484661 + 6 2.26e-05 CTGCT GCCCCTCAGCTCGCGACCCTCC TGCACCTGCC chr6:31763565-31764065 - 23 2.26e-05 ATTGGAATAA TCCAGGCCACACCCTCATCTCC ATGGAGTGAT chr7:100127028-100127528 - 78 3.38e-05 T CCCTCCGCGATCCCCCACCCGC GCTCGGCCCC chr1:155688671-155689171 + 43 4.93e-05 GCCGGCCGAG TCCCATGACAACCTACCTCCCT GGGTTCGTCG chr21:42495864-42496364 + 17 5.30e-05 AACCTCGAGG TTCCCCCGCCGCTGCGCACCCT GGGAAGCCCT chr7:107563558-107564058 + 31 5.69e-05 CCTGGTCAGA CCCCGTCTCCTTACCGTCCTGC AGAAGTTCCC chr19:12801702-12802202 - 9 5.69e-05 AGGCGCATGG ACCCGGCCGCACGCTCCCCCGC ACCTGCGG chr6:37819255-37819755 - 29 7.50e-05 CCTGCTGTCT CCGTAACACCGTCCCCTCCCCC GGAGGCTGCG chr17:73232015-73232515 + 67 8.02e-05 CCACTACTTC CGGCGTCTGCTCCGCGCCCCCC CATGTCGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:15642677-15643177 3.2e-08 14_[+3]_64 chr17:2338014-2338514 3.8e-08 50_[+3]_28 chr12:22625666-22626166 5.5e-08 [+3]_78 chr19:44915023-44915523 1.5e-07 [-3]_78 chr19:39403243-39403743 1.7e-07 74_[-3]_4 chr5:141618940-141619440 2e-07 58_[-3]_20 chr19:12789884-12790384 3.2e-07 55_[-3]_23 chr6:10414890-10415390 3.2e-07 75_[-3]_3 chr6:37819054-37819554 3.6e-07 49_[+3]_29 chr2:60555180-60555680 5.5e-07 3_[-3]_75 chr6:43771512-43772012 5.5e-07 34_[-3]_44 chr19:10418198-10418698 6.3e-07 53_[+3]_25 chr19:14253943-14254443 6.3e-07 3_[-3]_75 chr14:75543659-75544159 8.2e-07 14_[+3]_64 chr11:57741109-57741609 8.2e-07 60_[+3]_18 chr1:30034574-30035074 9.3e-07 78_[+3] chr19:48510587-48511087 1.1e-06 33_[+3]_45 chr1:200891142-200891642 1.2e-06 34_[+3]_44 chr1:53740512-53741012 1.4e-06 30_[+3]_48 chr15:68229709-68230209 1.4e-06 57_[-3]_21 chr1:155562835-155563335 1.5e-06 72_[+3]_6 chrX:48897850-48898350 1.5e-06 76_[+3]_2 chr17:41734535-41735035 1.7e-06 27_[-3]_51 chr19:2309499-2309999 1.7e-06 77_[+3]_1 chr19:42302339-42302839 1.9e-06 72_[-3]_6 chr1:156082406-156082906 2.2e-06 70_[-3]_8 chr16:30021180-30021680 2.7e-06 42_[-3]_36 chr15:84653907-84654407 2.7e-06 47_[+3]_31 chrX:119693091-119693591 2.7e-06 12_[-3]_66 chr1:156114080-156114580 3e-06 23_[+3]_55 chr19:40284930-40285430 3.8e-06 12_[-3]_66 chr1:236280951-236281451 4.2e-06 50_[+3]_28 chr15:70494593-70495093 4.7e-06 64_[+3]_14 chr5:168794271-168794771 4.7e-06 14_[-3]_64 chr16:68645654-68646154 5.7e-06 46_[-3]_32 chr3:13648331-13648831 6.3e-06 77_[-3]_1 chr17:7483891-7484391 6.3e-06 53_[-3]_25 chr16:587807-588307 6.3e-06 33_[+3]_45 chr2:219500000-219500500 7e-06 76_[+3]_2 chr1:54407228-54407728 7.7e-06 65_[+3]_13 chr6:31497604-31498104 8.5e-06 27_[-3]_51 chr12:84911780-84912280 8.5e-06 66_[+3]_12 chr3:44338321-44338821 8.5e-06 34_[-3]_44 chr18:49813459-49813959 8.5e-06 40_[-3]_38 chr17:68102451-68102951 8.5e-06 61_[-3]_17 chr6:125749751-125750251 9.3e-06 44_[-3]_34 chr14:93043330-93043830 9.3e-06 23_[+3]_55 chr19:44212354-44212854 1e-05 18_[-3]_60 chr3:69250019-69250519 1.1e-05 15_[-3]_63 chr10:97318871-97319371 1.2e-05 64_[+3]_14 chr19:36378822-36379322 1.4e-05 29_[+3]_49 chr19:57814570-57815070 1.4e-05 73_[+3]_5 chr14:21526225-21526725 1.4e-05 7_[-3]_71 chr19:42216878-42217378 1.5e-05 67_[+3]_11 chr20:33993476-33993976 1.5e-05 64_[+3]_14 chr19:10332809-10333309 1.6e-05 11_[+3]_67 chr1:15617800-15618300 1.6e-05 [-3]_78 chr1:172532365-172532865 1.6e-05 1_[+3]_77 chr19:49850641-49851141 1.8e-05 44_[+3]_34 chr11:73142308-73142808 1.8e-05 58_[-3]_20 chrX:49163821-49164321 1.9e-05 44_[-3]_34 chr10:104274753-10427525 2.3e-05 10_[-3]_68 chr1:109484161-109484661 2.3e-05 5_[+3]_73 chr6:31763565-31764065 2.3e-05 22_[-3]_56 chr7:100127028-100127528 3.4e-05 77_[-3]_1 chr1:155688671-155689171 4.9e-05 42_[+3]_36 chr21:42495864-42496364 5.3e-05 16_[+3]_62 chr7:107563558-107564058 5.7e-05 30_[+3]_48 chr19:12801702-12802202 5.7e-05 8_[-3]_70 chr6:37819255-37819755 7.5e-05 28_[-3]_50 chr17:73232015-73232515 8e-05 66_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYCYSYCHCCDCCCCCHMCCCH width=22 seqs=71 chr16:15642677-15643177 ( 15) TCCCCTCTCCACCACCATCCCA 1 chr17:2338014-2338514 ( 51) TTCTCCCTCCACGCCCACCTCC 1 chr12:22625666-22626166 ( 1) TTGCCCCTCCTCCCACTCCCCA 1 chr19:44915023-44915523 ( 1) CTCTCCCAGAGCCCCCCACCCA 1 chr19:39403243-39403743 ( 75) GTCCTCCACCTCCCCAAACCCA 1 chr5:141618940-141619440 ( 59) CCCACTCACCACCCCCCCCCAC 1 chr19:12789884-12790384 ( 56) TCCAGCCACCATCCTCTCCCCT 1 chr6:10414890-10415390 ( 76) CTCCTCCTCCTCGCCCTCCTCT 1 chr6:37819054-37819554 ( 50) TTCTCCCACAGCCCCGCACTCC 1 chr2:60555180-60555680 ( 4) ACCCGTCTCCACCCTGCACCCT 1 chr6:43771512-43772012 ( 35) CCCTGCCCCCTCCACGCTCTCT 1 chr19:10418198-10418698 ( 54) CCCTGCCCCCATGCCCTCCTCT 1 chr19:14253943-14254443 ( 4) TCCTCCCCCATCCCACTCCCGT 1 chr14:75543659-75544159 ( 15) TCCTCTCACCTCGGCCTCCCAA 1 chr11:57741109-57741609 ( 61) TTCCCGCACCTTCCCGCTCCCT 1 chr1:30034574-30035074 ( 79) GTGTGGCACCACCCCACCCCCA 1 chr19:48510587-48511087 ( 34) CCCCGCCACCTCATCCCACCCC 1 chr1:200891142-200891642 ( 35) CTCCCGCAGCTCGCTCACCCCT 1 chr1:53740512-53741012 ( 31) ACCCCCCACCACCACATACTCT 1 chr15:68229709-68230209 ( 58) CCCCGCCCCAGCCCAACACCCA 1 chr1:155562835-155563335 ( 73) CTCCCTCTGCTCCTCCTCCTCC 1 chrX:48897850-48898350 ( 77) TGCCCTCTGCTCCCCCATCCCA 1 chr17:41734535-41735035 ( 28) TTCCGTCACCACTAGCTCCCCT 1 chr19:2309499-2309999 ( 78) GTCTGCCCCCTTCACCCACTCT 1 chr19:42302339-42302839 ( 73) GTCTCGCCTCTCCCTCCCCCCA 1 chr1:156082406-156082906 ( 71) TTCTCCCCGCACCCTCCCCTTA 1 chr16:30021180-30021680 ( 43) CTCTGCCACCTCCCAACAGCCA 1 chr15:84653907-84654407 ( 48) ACGTGCCTCCACCCACACCCAT 1 chrX:119693091-119693591 ( 13) ATCCGCCCCCTCTCCATACCCT 1 chr1:156114080-156114580 ( 24) ACCAGCCTCAGCCCTCCCCCCA 1 chr19:40284930-40285430 ( 13) GTGTCCCCGAACGCCCCCCCCA 1 chr1:236280951-236281451 ( 51) TCTTGCCCCCTCCCAATCCCCT 1 chr15:70494593-70495093 ( 65) ACCTTCCCCCACAACACCCCCT 1 chr5:168794271-168794771 ( 15) TTGCATCACCGCCCTCATCCCC 1 chr16:68645654-68646154 ( 47) TTCTCCGTCAGCCACCACCCCC 1 chr3:13648331-13648831 ( 78) TCCTCTCCCCACTTGGTCCCCA 1 chr17:7483891-7484391 ( 54) CCGCCTCTCCTCGCTGCTCCCT 1 chr16:587807-588307 ( 34) TCCACCCACCTCAGCCTCCCAA 1 chr2:219500000-219500500 ( 77) CCCTTTCCCAACCATGAACTCT 1 chr1:54407228-54407728 ( 66) TTCTGCCCACGCCGAGAACCCA 1 chr6:31497604-31498104 ( 28) TCCCTGCATCGCGACCACCCCA 1 chr12:84911780-84912280 ( 67) CCCCGCCCCATCGCCCACCTGC 1 chr3:44338321-44338821 ( 35) TCCCGGCTCCACCTGCCCCCAA 1 chr18:49813459-49813959 ( 41) GTCTATCCGAGCCCCGTCCCCT 1 chr17:68102451-68102951 ( 62) TTGTACCCTCTCCGCCCCCCCA 1 chr6:125749751-125750251 ( 45) CTCTGCGAGCGCCCACCACTCA 1 chr14:93043330-93043830 ( 24) TCCCTGCCCCGCCCAGCCCCAC 1 chr19:44212354-44212854 ( 19) CTGACTCACCTCCCGGACCCAA 1 chr3:69250019-69250519 ( 16) GTCTCTCCACACCCCCCACTTT 1 chr10:97318871-97319371 ( 65) GTCCGGCTTCACCCAGACCCCC 1 chr19:36378822-36379322 ( 30) CCCAGTCAGCGCCACAAACTCC 1 chr19:57814570-57815070 ( 74) TCCAGTCACCACCACGGTCCCA 1 chr14:21526225-21526725 ( 8) TCCCGCCCCCACGCCCCCGCTA 1 chr19:42216878-42217378 ( 68) CCGCTCCCGCACCCCCAACCGC 1 chr20:33993476-33993976 ( 65) TCGTGTCACCGTGTCCTTCCCA 1 chr19:10332809-10333309 ( 12) TCCATTCCCCGCCCGCTTCCAT 1 chr1:15617800-15618300 ( 1) CCCTCTCCTCGTACCCCACCCC 1 chr1:172532365-172532865 ( 2) TTCCCTCACAACACACACGTCA 1 chr19:49850641-49851141 ( 45) GTCTCCCGCCGTCCCGACCCCC 1 chr11:73142308-73142808 ( 59) GCGTTTCTACACCTCCCACCCA 1 chrX:49163821-49164321 ( 45) CTCCTCCCACTCGAAGCACCCT 1 chr10:104274753-10427525 ( 11) CGCCCCCAGCTCGCGGACCCCA 1 chr1:109484161-109484661 ( 6) GCCCCTCAGCTCGCGACCCTCC 1 chr6:31763565-31764065 ( 23) TCCAGGCCACACCCTCATCTCC 1 chr7:100127028-100127528 ( 78) CCCTCCGCGATCCCCCACCCGC 1 chr1:155688671-155689171 ( 43) TCCCATGACAACCTACCTCCCT 1 chr21:42495864-42496364 ( 17) TTCCCCCGCCGCTGCGCACCCT 1 chr7:107563558-107564058 ( 31) CCCCGTCTCCTTACCGTCCTGC 1 chr19:12801702-12802202 ( 9) ACCCGGCCGCACGCTCCCCCGC 1 chr6:37819255-37819755 ( 29) CCGTAACACCGTCCCCTCCCCC 1 chr17:73232015-73232515 ( 67) CGGCGTCTGCTCCGCGCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.2167 E= 4.5e-012 -107 21 -92 98 -1279 87 -279 102 -1279 146 -67 -388 -71 62 -1279 102 -156 48 38 -56 -388 75 -105 76 -1279 169 -237 -1279 82 38 -337 12 -156 115 -47 -156 -18 148 -1279 -1279 82 -1279 -21 87 -1279 158 -1279 -71 -130 115 -47 -188 -30 115 -179 -107 -18 95 -157 -42 -56 102 -13 -1279 51 58 -437 29 44 95 -1279 -42 -1279 171 -279 -1279 -1279 135 -1279 29 -88 138 -179 -230 87 2 -1279 64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 71 E= 4.5e-012 0.098592 0.338028 0.154930 0.408451 0.000000 0.535211 0.042254 0.422535 0.000000 0.802817 0.183099 0.014085 0.126761 0.450704 0.000000 0.422535 0.070423 0.408451 0.380282 0.140845 0.014085 0.492958 0.140845 0.352113 0.000000 0.943662 0.056338 0.000000 0.366197 0.380282 0.028169 0.225352 0.070423 0.647887 0.211268 0.070423 0.183099 0.816901 0.000000 0.000000 0.366197 0.000000 0.253521 0.380282 0.000000 0.873239 0.000000 0.126761 0.084507 0.647887 0.211268 0.056338 0.169014 0.647887 0.084507 0.098592 0.183099 0.563380 0.098592 0.154930 0.140845 0.591549 0.267606 0.000000 0.295775 0.436620 0.014085 0.253521 0.281690 0.563380 0.000000 0.154930 0.000000 0.957746 0.042254 0.000000 0.000000 0.746479 0.000000 0.253521 0.112676 0.760563 0.084507 0.042254 0.380282 0.295775 0.000000 0.323944 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYSYCHCCDCCCCCHMCCCH MEME-3 regular expression -------------------------------------------------------------------------------- [TC][CT]C[CT][CG][CT]C[CAT][CG]C[TAG]C[CG]CC[CG][CAT][CA]C[CT]C[ATC] -------------------------------------------------------------------------------- Time 1485.19 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTWTTTTCYTT MEME-4 width = 12 sites = 22 llr = 265 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:35:31::::2 pos.-specific C ::::::2174:: probability G :::::::1:1:: matrix T 9a74a76835a8 bits 2.3 * * * 2.0 * * * 1.8 * * * 1.6 ** * ** Relative 1.4 ** * * ** Entropy 1.1 ****** ** ** (17.3 bits) 0.9 ********* ** 0.7 ************ 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel TTTATTTTCTTT consensus AT AC TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:48555935-48556435 + 9 3.15e-08 AAGGAGGG TTTTTTTTTTTT CCTTAAAGAA chr17:2400698-2401198 - 42 3.15e-08 GTGCCGCCTT TTTTTTTTTTTT GCATCCCATT chr2:74835171-74835671 + 89 7.58e-08 GAAAACGAGC TTTTTTTTCCTT chr6:124371514-124372014 - 5 7.58e-08 ACTTACACTC TTTTTTTTCCTT TCTT chr19:35930995-35931495 - 86 2.09e-07 TAC TTTTTTCTCTTT TTCACAGCAG chr1:217630968-217631468 + 60 4.67e-07 CAGAAATTTC TTAATTCTCTTT TTAGTGCTCT chr6:41591758-41592258 + 9 6.83e-07 CTAGGCCA TTTATTTTTCTA TAGCCAAAAG chr19:35900506-35901006 + 88 8.14e-07 GGGGCCTGGA TTTCttttcttt t chr13:75537746-75538246 - 46 8.14e-07 TTTCCATAAA ATAATTTTCTTT TAGCTCAATG chr20:2102233-2102733 - 3 1.09e-06 GCCGGCGGAA ATATTTTTCTTT GC chr20:43590536-43591036 + 62 1.09e-06 TGGTGAAAAG TTAATTCTCCTT ATGTTTGGAT chr4:182143827-182144327 - 54 1.27e-06 GCTGTGATCA TTTATAATCCTT GACTCCTCCG chr19:28307502-28308002 - 12 1.42e-06 TTGGCTGCAC TTTTTCTTCTTT CTTCTGCCCT chr20:47360958-47361458 - 83 2.24e-06 CTGCTT TTCATTTTCCTT CTGCTCCTGC chr7:128739271-128739771 + 3 2.61e-06 TC TTTATTCGCTTT CTTTCTGTCC chr14:73714368-73714868 - 77 2.61e-06 CAGGATTGGG TTATTATTTTTA AAACACGGTG chr5:40755122-40755622 - 82 2.79e-06 GAGCGTT TTTATTATTGTT GACCGATGAA chr10:72096255-72096755 - 14 3.47e-06 GTTTGTCCTC TTAATATTTGTT GGATTCCTGT chr22:31055271-31055771 + 48 4.06e-06 AGATGGGCTA TTTTTATCCCTT AAAacacaca chr3:73236784-73237284 - 36 4.33e-06 ATGTAGGTCA TTTATATGTCTT GGCAGGTGAC chr2:200811461-200811961 - 68 8.07e-06 TCCAGTCTTC TTTATTCCCTTA CTGGGTTCCA chr5:6418628-6419128 + 1 1.02e-05 . ATTATAATCTTA GCATTCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:48555935-48556435 3.2e-08 8_[+4]_80 chr17:2400698-2401198 3.2e-08 41_[-4]_47 chr2:74835171-74835671 7.6e-08 88_[+4] chr6:124371514-124372014 7.6e-08 4_[-4]_84 chr19:35930995-35931495 2.1e-07 85_[-4]_3 chr1:217630968-217631468 4.7e-07 59_[+4]_29 chr6:41591758-41592258 6.8e-07 8_[+4]_80 chr19:35900506-35901006 8.1e-07 87_[+4]_1 chr13:75537746-75538246 8.1e-07 45_[-4]_43 chr20:2102233-2102733 1.1e-06 2_[-4]_86 chr20:43590536-43591036 1.1e-06 61_[+4]_27 chr4:182143827-182144327 1.3e-06 53_[-4]_35 chr19:28307502-28308002 1.4e-06 11_[-4]_77 chr20:47360958-47361458 2.2e-06 82_[-4]_6 chr7:128739271-128739771 2.6e-06 2_[+4]_86 chr14:73714368-73714868 2.6e-06 76_[-4]_12 chr5:40755122-40755622 2.8e-06 81_[-4]_7 chr10:72096255-72096755 3.5e-06 13_[-4]_75 chr22:31055271-31055771 4.1e-06 47_[+4]_41 chr3:73236784-73237284 4.3e-06 35_[-4]_53 chr2:200811461-200811961 8.1e-06 67_[-4]_21 chr5:6418628-6419128 1e-05 [+4]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTWTTTTCYTT width=12 seqs=22 chr17:48555935-48556435 ( 9) TTTTTTTTTTTT 1 chr17:2400698-2401198 ( 42) TTTTTTTTTTTT 1 chr2:74835171-74835671 ( 89) TTTTTTTTCCTT 1 chr6:124371514-124372014 ( 5) TTTTTTTTCCTT 1 chr19:35930995-35931495 ( 86) TTTTTTCTCTTT 1 chr1:217630968-217631468 ( 60) TTAATTCTCTTT 1 chr6:41591758-41592258 ( 9) TTTATTTTTCTA 1 chr19:35900506-35901006 ( 88) TTTCTTTTCTTT 1 chr13:75537746-75538246 ( 46) ATAATTTTCTTT 1 chr20:2102233-2102733 ( 3) ATATTTTTCTTT 1 chr20:43590536-43591036 ( 62) TTAATTCTCCTT 1 chr4:182143827-182144327 ( 54) TTTATAATCCTT 1 chr19:28307502-28308002 ( 12) TTTTTCTTCTTT 1 chr20:47360958-47361458 ( 83) TTCATTTTCCTT 1 chr7:128739271-128739771 ( 3) TTTATTCGCTTT 1 chr14:73714368-73714868 ( 77) TTATTATTTTTA 1 chr5:40755122-40755622 ( 82) TTTATTATTGTT 1 chr10:72096255-72096755 ( 14) TTAATATTTGTT 1 chr22:31055271-31055771 ( 48) TTTTTATCCCTT 1 chr3:73236784-73237284 ( 36) TTTATATGTCTT 1 chr2:200811461-200811961 ( 68) TTTATTCCCTTA 1 chr5:6418628-6419128 ( 1) ATTATAATCTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 12.7783 E= 2.1e-001 -61 -1110 -1110 206 -1110 -1110 -1110 227 39 -268 -1110 171 139 -268 -1110 98 -1110 -1110 -1110 227 39 -268 -1110 171 -61 -36 -1110 161 -1110 -168 -168 198 -1110 122 -1110 62 -1110 31 -168 139 -1110 -1110 -1110 227 -19 -1110 -1110 198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 22 E= 2.1e-001 0.136364 0.000000 0.000000 0.863636 0.000000 0.000000 0.000000 1.000000 0.272727 0.045455 0.000000 0.681818 0.545455 0.045455 0.000000 0.409091 0.000000 0.000000 0.000000 1.000000 0.272727 0.045455 0.000000 0.681818 0.136364 0.227273 0.000000 0.636364 0.000000 0.090909 0.090909 0.818182 0.000000 0.681818 0.000000 0.318182 0.000000 0.363636 0.090909 0.545455 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.000000 0.818182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTTTCYTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[TA][AT]T[TA][TC]T[CT][TC]TT -------------------------------------------------------------------------------- Time 1894.90 secs. ******************************************************************************** ******************************************************************************** MOTIF MWTTTAAAA MEME-5 width = 9 sites = 32 llr = 326 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 46::3988a pos.-specific C 6:2::::2: probability G ::::::2:: matrix T :48a71::: bits 2.3 * * 2.0 * * * 1.8 * * * 1.6 ** **** Relative 1.4 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ********* 0.7 ********* 0.5 ********* 0.2 ********* 0.0 --------- Multilevel CATTTAAAA consensus AT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr3:9792639-9793139 + 80 1.75e-06 CGAGTGCAAG AATTTAAAA ATACCGAGAC chr14:75543659-75544159 - 88 1.75e-06 TTGA CATTTAAAA TTTGCCCTAA chr9:85943729-85944229 - 14 1.75e-06 TAATTCCCAG CATTTAAAA TTGTTTTGTG chr13:75549367-75549867 + 53 1.75e-06 GCAGCATCTT AATTTAAAA TATGACACTT chr5:181244112-181244612 + 3 1.75e-06 GC AATTTAAAA AGTAGAGTAT chr6:24720790-24721290 + 64 3.50e-06 AGGGACAGGT CTTTTAAAA GTGGAGCCTT chr5:140720697-140721197 - 81 3.50e-06 ACTGAGACAG ATTTTAAAA GGGGGTGAAA chr4:139015361-139015861 + 64 3.50e-06 GCCCCGCTTC CTTTTAAAA CAGGATTACG chr6:104955830-104956330 + 28 3.50e-06 TGGTAGTGGA CTTTTAAAA TGTCAGGGTA chr19:30662365-30662865 - 5 5.26e-06 CAACCAGATA CATTAAAAA AAAA chr15:88467304-88467804 + 10 5.26e-06 ATCTCAGAA CATTAAAAA AGGGAAAGAA chr15:82540412-82540912 - 78 5.26e-06 CGGGCGGTCC CATTAAAAA TCAGATGGGG chr1:8349068-8349568 - 75 5.26e-06 CATTGGAGCA AATTAAAAA CAGGCTTTTA chr17:32114491-32114991 + 79 1.19e-05 TTACAGCTAG CACTTAAAA TCAAAAGTGG chr15:85471306-85471806 - 62 1.19e-05 CTGACCTAAG CACTTAAAA TGGGTGAATT chr5:42811770-42812270 + 54 1.19e-05 GATTGTTATC AACTTAAAA GAAAGTAGCA chr19:18204299-18204799 - 8 1.19e-05 GAGTCAGGGG CATTTAACA GGGGTCA chr1:226723772-226724272 + 34 1.19e-05 TTAGGGCATC CACTTAAAA ACGCTCTTCA chr8:106657475-106657975 + 60 1.44e-05 CCTCATTTTG CATTTAGAA GCCACAAGAA chr11:65492690-65493190 + 87 1.44e-05 GAGGTGGGTA CATTTAGAA GATGT chr12:53626007-53626507 - 56 1.93e-05 CCGGTAAGTC CTTTTAACA TTAGCTAGTC chr6:113971048-113971548 - 59 1.93e-05 CTTCTTCCTC ATTTTAACA CTGTGTATGG chr15:71252121-71252621 - 32 1.93e-05 GTGATCTCTC ATTTTAACA GACTCTCTGA chr6:33323138-33323638 + 61 1.93e-05 GGGCAGAAGT CTCTTAAAA GGGAAGTAAA chr16:23269161-23269661 - 19 1.93e-05 TTCTACCAAG CTTTTAACA TCCGCATTGG chr1:181133336-181133836 - 53 2.35e-05 AAAGCAGACT CATTTTAAA GACCTGCTGT chr5:36690431-36690931 - 39 2.35e-05 GGCACTGAGG AATTTTAAA CCTGACTTGA chr2:158973495-158973995 - 85 3.09e-05 ACAACAA CATTAAGAA TCTTCATATC chr5:173918068-173918568 - 61 3.09e-05 AGTTGTTCAA AATTAAGAA TAGGCCCTTC chr12:56221196-56221696 + 57 3.76e-05 ATCATTGCCC ATTTAAACA CCACGCTGTT chr22:23787347-23787847 - 73 3.76e-05 AATTTACGAC ATCTAAAAA GGGTCAAAGG chr6:14671273-14671773 + 4 4.00e-05 TGT ATTTAAGAA TCACTCACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:9792639-9793139 1.8e-06 79_[+5]_12 chr14:75543659-75544159 1.8e-06 87_[-5]_4 chr9:85943729-85944229 1.8e-06 13_[-5]_78 chr13:75549367-75549867 1.8e-06 52_[+5]_39 chr5:181244112-181244612 1.8e-06 2_[+5]_89 chr6:24720790-24721290 3.5e-06 63_[+5]_28 chr5:140720697-140721197 3.5e-06 80_[-5]_11 chr4:139015361-139015861 3.5e-06 63_[+5]_28 chr6:104955830-104956330 3.5e-06 27_[+5]_64 chr19:30662365-30662865 5.3e-06 4_[-5]_87 chr15:88467304-88467804 5.3e-06 9_[+5]_82 chr15:82540412-82540912 5.3e-06 77_[-5]_14 chr1:8349068-8349568 5.3e-06 74_[-5]_17 chr17:32114491-32114991 1.2e-05 78_[+5]_13 chr15:85471306-85471806 1.2e-05 61_[-5]_30 chr5:42811770-42812270 1.2e-05 53_[+5]_38 chr19:18204299-18204799 1.2e-05 7_[-5]_84 chr1:226723772-226724272 1.2e-05 33_[+5]_58 chr8:106657475-106657975 1.4e-05 59_[+5]_32 chr11:65492690-65493190 1.4e-05 86_[+5]_5 chr12:53626007-53626507 1.9e-05 55_[-5]_36 chr6:113971048-113971548 1.9e-05 58_[-5]_33 chr15:71252121-71252621 1.9e-05 31_[-5]_60 chr6:33323138-33323638 1.9e-05 60_[+5]_31 chr16:23269161-23269661 1.9e-05 18_[-5]_73 chr1:181133336-181133836 2.4e-05 52_[-5]_39 chr5:36690431-36690931 2.4e-05 38_[-5]_53 chr2:158973495-158973995 3.1e-05 84_[-5]_7 chr5:173918068-173918568 3.1e-05 60_[-5]_31 chr12:56221196-56221696 3.8e-05 56_[+5]_35 chr22:23787347-23787847 3.8e-05 72_[-5]_19 chr6:14671273-14671773 4e-05 3_[+5]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MWTTTAAAA width=9 seqs=32 chr3:9792639-9793139 ( 80) AATTTAAAA 1 chr14:75543659-75544159 ( 88) CATTTAAAA 1 chr9:85943729-85944229 ( 14) CATTTAAAA 1 chr13:75549367-75549867 ( 53) AATTTAAAA 1 chr5:181244112-181244612 ( 3) AATTTAAAA 1 chr6:24720790-24721290 ( 64) CTTTTAAAA 1 chr5:140720697-140721197 ( 81) ATTTTAAAA 1 chr4:139015361-139015861 ( 64) CTTTTAAAA 1 chr6:104955830-104956330 ( 28) CTTTTAAAA 1 chr19:30662365-30662865 ( 5) CATTAAAAA 1 chr15:88467304-88467804 ( 10) CATTAAAAA 1 chr15:82540412-82540912 ( 78) CATTAAAAA 1 chr1:8349068-8349568 ( 75) AATTAAAAA 1 chr17:32114491-32114991 ( 79) CACTTAAAA 1 chr15:85471306-85471806 ( 62) CACTTAAAA 1 chr5:42811770-42812270 ( 54) AACTTAAAA 1 chr19:18204299-18204799 ( 8) CATTTAACA 1 chr1:226723772-226724272 ( 34) CACTTAAAA 1 chr8:106657475-106657975 ( 60) CATTTAGAA 1 chr11:65492690-65493190 ( 87) CATTTAGAA 1 chr12:53626007-53626507 ( 56) CTTTTAACA 1 chr6:113971048-113971548 ( 59) ATTTTAACA 1 chr15:71252121-71252621 ( 32) ATTTTAACA 1 chr6:33323138-33323638 ( 61) CTCTTAAAA 1 chr16:23269161-23269661 ( 19) CTTTTAACA 1 chr1:181133336-181133836 ( 53) CATTTTAAA 1 chr5:36690431-36690931 ( 39) AATTTTAAA 1 chr2:158973495-158973995 ( 85) CATTAAGAA 1 chr5:173918068-173918568 ( 61) AATTAAGAA 1 chr12:56221196-56221696 ( 57) ATTTAAACA 1 chr22:23787347-23787847 ( 73) ATCTAAAAA 1 chr6:14671273-14671773 ( 4) ATTTAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 12.7522 E= 2.1e+002 97 102 -1164 -1164 159 -1164 -1164 85 -1164 -64 -1164 197 -1164 -1164 -1164 227 44 -1164 -1164 179 217 -1164 -1164 -173 202 -1164 -90 -1164 197 -64 -1164 -1164 227 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 32 E= 2.1e+002 0.406250 0.593750 0.000000 0.000000 0.625000 0.000000 0.000000 0.375000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.000000 1.000000 0.281250 0.000000 0.000000 0.718750 0.937500 0.000000 0.000000 0.062500 0.843750 0.000000 0.156250 0.000000 0.812500 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [CA][AT]TT[TA]AAAA -------------------------------------------------------------------------------- Time 2302.82 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 width = 27 sites = 3 llr = 102 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 Description -------------------------------------------------------------------------------- Simplified A a::::::::a::a:a:::3::a:::a: pos.-specific C ::::a::::::::7:::3::::3aa:a probability G :a:a::aaa::3:::aa:7:a:7:::: matrix T ::a::a::::a7:3:::7:a::::::: bits 2.3 * * * ** * * * * * 2.0 * * * ** * * * * * 1.8 *********** * *** *** **** 1.6 *********** * *** *** **** Relative 1.4 *********** * *** *** **** Entropy 1.1 ********************** **** (49.2 bits) 0.9 *************************** 0.7 *************************** 0.5 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel AGTGCTGGGATTACAGGTGTGAGCCAC consensus G T CA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr14:75543659-75544159 + 37 1.52e-16 ggcctcccaa agtgctgggattataggtgtgagccac tgcacccagc chr3:9648950-9649450 + 4 4.23e-16 caa agtgctgggatgacaggtgtgagccac cacgctcggc chr16:587807-588307 + 56 1.44e-15 agcctcccaa agtgctgggattacaggcatgacccac cgtgcccggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:75543659-75544159 1.5e-16 36_[+6]_37 chr3:9648950-9649450 4.2e-16 3_[+6]_70 chr16:587807-588307 1.4e-15 55_[+6]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGCTGGGATKAYAGGYRTGASCCAC width=27 seqs=3 chr14:75543659-75544159 ( 37) AGTGCTGGGATTATAGGTGTGAGCCAC 1 chr3:9648950-9649450 ( 4) AGTGCTGGGATGACAGGTGTGAGCCAC 1 chr16:587807-588307 ( 56) AGTGCTGGGATTACAGGCATGACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 13.5121 E= 1.9e+003 226 -823 -823 -823 -823 -823 177 -823 -823 -823 -823 226 -823 -823 177 -823 -823 177 -823 -823 -823 -823 -823 226 -823 -823 177 -823 -823 -823 177 -823 -823 -823 177 -823 226 -823 -823 -823 -823 -823 -823 226 -823 -823 19 168 226 -823 -823 -823 -823 119 -823 68 226 -823 -823 -823 -823 -823 177 -823 -823 -823 177 -823 -823 19 -823 168 68 -823 119 -823 -823 -823 -823 226 -823 -823 177 -823 226 -823 -823 -823 -823 19 119 -823 -823 177 -823 -823 -823 177 -823 -823 226 -823 -823 -823 -823 177 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 3 E= 1.9e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATKAYAGGYRTGASCCAC MEME-6 regular expression -------------------------------------------------------------------------------- AGTGCTGGGAT[TG]A[CT]AGG[TC][GA]TGA[GC]CCAC -------------------------------------------------------------------------------- Time 2708.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 width = 28 sites = 8 llr = 173 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 Description -------------------------------------------------------------------------------- Simplified A 1:::1:15::93::35:1:4139:14:3 pos.-specific C :::9543:aa:8133411333:1::::: probability G 8aa:16::::1::65:986438:a96a8 matrix T 1::13:65::::91:1::1:4::::::: bits 2.3 2.0 1.8 ** ** * * 1.6 ** *** * ** * Relative 1.4 *** **** * *** * Entropy 1.1 *** ****** * **** ** (31.1 bits) 0.9 **** ******** * ******* 0.7 **** ******** *** ******* 0.5 **** *************** ******* 0.2 **************************** 0.0 ---------------------------- Multilevel GGGCCGTACCACTGGAGGGATGAGGGGG consensus TCCT A CAC CGCA A A sequence C CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr1:1692870-1693370 + 60 4.43e-13 GGTTCCGCCG GGGCCGTTCCACTGAAGGCAGAAGGGGG GGGACCGTGG chr19:14496073-14496573 + 70 1.36e-11 AAGCCGCGGC TGGCTGTACCACCGGAGGGCTGAGGAGG GGG chrX:48737372-48737872 + 2 2.74e-11 G AGGCCGATCCACTCGCGGGATGAGGAGA CCTTTCGTGT chr19:44141358-44141858 + 7 9.45e-11 AGTCGC GGGCACTTCCGCTCCAGGGAAGAGGGGG CGATTGTCAC chr1:1692630-1693130 + 30 1.11e-10 GGTTCTGCTC GGGCCCTTCCACTGCAGGCCGACGGGGG TGGAAACACG chr3:111859329-111859829 + 29 1.20e-10 CGCCGGGAAC GGGCTGCACCAATGGCCAGGTGAGGAGG CGGCGGTGGT chrX:49166316-49166816 - 25 2.18e-10 CCGGCTGGAA GGGTCGTACCACTGACGCTGCGAGGGGA GTGTGGTCAG chr19:46347221-46347721 + 28 9.22e-10 AGACTGAGGA GGGCGCCACCAATTGTGGGGCGAGAGGG GGACTGGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:1692870-1693370 4.4e-13 59_[+7]_13 chr19:14496073-14496573 1.4e-11 69_[+7]_3 chrX:48737372-48737872 2.7e-11 1_[+7]_71 chr19:44141358-44141858 9.4e-11 6_[+7]_66 chr1:1692630-1693130 1.1e-10 29_[+7]_43 chr3:111859329-111859829 1.2e-10 28_[+7]_44 chrX:49166316-49166816 2.2e-10 24_[-7]_48 chr19:46347221-46347721 9.2e-10 27_[+7]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCYSTWCCACTGVMGGGVBGAGGRGG width=28 seqs=8 chr1:1692870-1693370 ( 60) GGGCCGTTCCACTGAAGGCAGAAGGGGG 1 chr19:14496073-14496573 ( 70) TGGCTGTACCACCGGAGGGCTGAGGAGG 1 chrX:48737372-48737872 ( 2) AGGCCGATCCACTCGCGGGATGAGGAGA 1 chr19:44141358-44141858 ( 7) GGGCACTTCCGCTCCAGGGAAGAGGGGG 1 chr1:1692630-1693130 ( 30) GGGCCCTTCCACTGCAGGCCGACGGGGG 1 chr3:111859329-111859829 ( 29) GGGCTGCACCAATGGCCAGGTGAGGAGG 1 chrX:49166316-49166816 ( 25) GGGTCGTACCACTGACGCTGCGAGGGGA 1 chr19:46347221-46347721 ( 28) GGGCGCCACCAATTGTGGGGCGAGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 11.5702 E= 4.8e+003 -73 -965 136 -73 -965 -965 177 -965 -965 -965 177 -965 -965 158 -965 -73 -73 77 -122 27 -965 36 110 -965 -73 -23 -965 159 127 -965 -965 127 -965 177 -965 -965 -965 177 -965 -965 207 -965 -122 -965 27 136 -965 -965 -965 -122 -965 207 -965 -23 110 -73 27 -23 77 -965 127 36 -965 -73 -965 -122 158 -965 -73 -122 136 -965 -965 -23 110 -73 85 -23 36 -965 -73 -23 -23 85 27 -965 136 -965 207 -122 -965 -965 -965 -965 177 -965 -73 -965 158 -965 85 -965 110 -965 -965 -965 177 -965 27 -965 136 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 8 E= 4.8e+003 0.125000 0.000000 0.750000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.125000 0.500000 0.125000 0.250000 0.000000 0.375000 0.625000 0.000000 0.125000 0.250000 0.000000 0.625000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.625000 0.125000 0.250000 0.250000 0.500000 0.000000 0.500000 0.375000 0.000000 0.125000 0.000000 0.125000 0.875000 0.000000 0.125000 0.125000 0.750000 0.000000 0.000000 0.250000 0.625000 0.125000 0.375000 0.250000 0.375000 0.000000 0.125000 0.250000 0.250000 0.375000 0.250000 0.000000 0.750000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCYSTWCCACTGVMGGGVBGAGGRGG MEME-7 regular expression -------------------------------------------------------------------------------- GGGC[CT][GC][TC][AT]CCA[CA]T[GC][GAC][AC]GG[GC][AGC][TCG][GA]AGG[GA]G[GA] -------------------------------------------------------------------------------- Time 3116.41 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 width = 31 sites = 2 llr = 86 E-value = 8.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 Description -------------------------------------------------------------------------------- Simplified A a::::::::a::a:::::::::aa::a::5a pos.-specific C :a:a:::aa::a::aa:::::a:::a::a:: probability G ::::::::::a::a:::a::a:::::::::: matrix T ::a:aaa:::::::::a:aa::::a::a:5: bits 2.3 * * *** * * * ** *** ** * 2.0 * * *** * * * ** *** ** * 1.8 ***************************** * 1.6 ***************************** * Relative 1.4 ******************************* Entropy 1.1 ******************************* (62.4 bits) 0.9 ******************************* 0.7 ******************************* 0.5 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel ACTCTTTCCAGCAGCCTGTTGCAATCATCAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr16:14974616-14975116 - 55 1.67e-19 TGTTCACCAA ACTCTTTCCAGCAGCCTGTTGCAATCATCAA GGTAGAAGTA chr16:70065882-70066382 + 1 1.67e-19 . ACTCTTTCCAGCAGCCTGTTGCAATCATCTA GGTAGAAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:14974616-14975116 1.7e-19 54_[-8]_15 chr16:70065882-70066382 1.7e-19 [+8]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTCTTTCCAGCAGCCTGTTGCAATCATCWA width=31 seqs=2 chr16:14974616-14975116 ( 55) ACTCTTTCCAGCAGCCTGTTGCAATCATCAA 1 chr16:70065882-70066382 ( 1) ACTCTTTCCAGCAGCCTGTTGCAATCATCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 14.358 E= 8.0e+004 226 -765 -765 -765 -765 177 -765 -765 -765 -765 -765 226 -765 177 -765 -765 -765 -765 -765 226 -765 -765 -765 226 -765 -765 -765 226 -765 177 -765 -765 -765 177 -765 -765 226 -765 -765 -765 -765 -765 177 -765 -765 177 -765 -765 226 -765 -765 -765 -765 -765 177 -765 -765 177 -765 -765 -765 177 -765 -765 -765 -765 -765 226 -765 -765 177 -765 -765 -765 -765 226 -765 -765 -765 226 -765 -765 177 -765 -765 177 -765 -765 226 -765 -765 -765 226 -765 -765 -765 -765 -765 -765 226 -765 177 -765 -765 226 -765 -765 -765 -765 -765 -765 226 -765 177 -765 -765 126 -765 -765 126 226 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 2 E= 8.0e+004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCTTTCCAGCAGCCTGTTGCAATCATCWA MEME-8 regular expression -------------------------------------------------------------------------------- ACTCTTTCCAGCAGCCTGTTGCAATCATC[AT]A -------------------------------------------------------------------------------- Time 3517.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGNAHAATGGTATCT MEME-9 width = 16 sites = 4 llr = 78 E-value = 3.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 Description -------------------------------------------------------------------------------- Simplified A :a:383aa:3::a::: pos.-specific C :::3:3::::::::a: probability G ::a3:::::8a3:::: matrix T a::335::a::8:a:a bits 2.3 ** *** ** * 2.0 ** *** ** * 1.8 *** *** * **** 1.6 *** *** * **** Relative 1.4 *** * *** ****** Entropy 1.1 *** * ********** (28.0 bits) 0.9 *** * ********** 0.7 *** ************ 0.5 *** ************ 0.2 *** ************ 0.0 ---------------- Multilevel TAGAATAATGGTATCT consensus CTA A G sequence G C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chrX:48737372-48737872 + 46 7.56e-10 GTGTCTCCAC TAGTACAATGGTATCT TCCGAAATAC chr5:132866302-132866802 + 69 7.56e-10 TTAGAGACAG TAGGAAAATGGTATCT CCCGGAAGTT chr12:57245086-57245586 + 5 1.37e-09 ACTA TAGAATAatgggatct cagagatctc chrX:48021268-48021768 - 39 2.64e-09 TCGCCACCGC TAGCTTAATAGTATCT ATCTCCCTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:48737372-48737872 7.6e-10 45_[+9]_39 chr5:132866302-132866802 7.6e-10 68_[+9]_16 chr12:57245086-57245586 1.4e-09 4_[+9]_80 chrX:48021268-48021768 2.6e-09 38_[-9]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGNAHAATGGTATCT width=16 seqs=4 chrX:48737372-48737872 ( 46) TAGTACAATGGTATCT 1 chr5:132866302-132866802 ( 69) TAGGAAAATGGTATCT 1 chr12:57245086-57245586 ( 5) TAGAATAATGGGATCT 1 chrX:48021268-48021768 ( 39) TAGCTTAATAGTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 13.6381 E= 3.6e+005 -865 -865 -865 226 226 -865 -865 -865 -865 -865 177 -865 27 -22 -22 27 185 -865 -865 27 27 -22 -865 127 226 -865 -865 -865 226 -865 -865 -865 -865 -865 -865 226 27 -865 136 -865 -865 -865 177 -865 -865 -865 -22 185 226 -865 -865 -865 -865 -865 -865 226 -865 177 -865 -865 -865 -865 -865 226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 4 E= 3.6e+005 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.750000 0.000000 0.000000 0.250000 0.250000 0.250000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGNAHAATGGTATCT MEME-9 regular expression -------------------------------------------------------------------------------- TAG[ACGT][AT][TAC]AAT[GA]G[TG]ATCT -------------------------------------------------------------------------------- Time 3912.85 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGAGTGAAAGGCTGGAAATA MEME-10 width = 22 sites = 2 llr = 63 E-value = 4.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 Description -------------------------------------------------------------------------------- Simplified A a:::a:::aaa::::::aaa:a pos.-specific C :::::::::::::a:::::::: probability G ::aa:a:a:::aa::aa::::: matrix T :a::::a:::::::a:::::a: bits 2.3 ** * * *** * ***** 2.0 ** * * *** * ***** 1.8 ********************** 1.6 ********************** Relative 1.4 ********************** Entropy 1.1 ********************** (45.4 bits) 0.9 ********************** 0.7 ********************** 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel ATGGAGTGAAAGGCTGGAAATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr16:14974616-14975116 - 1 2.11e-14 AGTACTATTC ATGGAGTGAAAGGCTGGAAATA chr16:70065882-70066382 + 64 2.11e-14 AGTACTATTC ATGGAGTGAAAGGCTGGAAATA CTAGTGACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:14974616-14975116 2.1e-14 [-10]_78 chr16:70065882-70066382 2.1e-14 63_[+10]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGAGTGAAAGGCTGGAAATA width=22 seqs=2 chr16:14974616-14975116 ( 1) ATGGAGTGAAAGGCTGGAAATA 1 chr16:70065882-70066382 ( 64) ATGGAGTGAAAGGCTGGAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 14.5325 E= 4.3e+005 226 -765 -765 -765 -765 -765 -765 226 -765 -765 177 -765 -765 -765 177 -765 226 -765 -765 -765 -765 -765 177 -765 -765 -765 -765 226 -765 -765 177 -765 226 -765 -765 -765 226 -765 -765 -765 226 -765 -765 -765 -765 -765 177 -765 -765 -765 177 -765 -765 177 -765 -765 -765 -765 -765 226 -765 -765 177 -765 -765 -765 177 -765 226 -765 -765 -765 226 -765 -765 -765 226 -765 -765 -765 -765 -765 -765 226 226 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 2 E= 4.3e+005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTGAAAGGCTGGAAATA MEME-10 regular expression -------------------------------------------------------------------------------- ATGGAGTGAAAGGCTGGAAATA -------------------------------------------------------------------------------- Time 4310.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:28628223-28628723 1.05e-03 25_[-2(1.91e-05)]_44 chr19:43464145-43464645 3.83e-01 100 chr1:222711390-222711890 2.07e-02 24_[-2(3.14e-06)]_45 chr12:53942433-53942933 1.96e-04 32_[+2(8.18e-07)]_37 chr7:55365893-55366393 9.98e-01 100 chr1:5991854-5992354 4.14e-01 100 chr1:20493946-20494446 3.81e-01 100 chr19:55638985-55639485 8.66e-01 100 chr15:85795373-85795873 9.00e-03 9_[+2(1.23e-05)]_60 chr15:90420403-90420903 9.47e-04 100 chr3:136193199-136193699 1.89e-02 48_[+2(8.85e-05)]_21 chr3:111071325-111071825 1.06e-06 39_[+4(1.54e-06)]_9_[-2(1.83e-06)]_\ 9 chr1:30034574-30035074 1.30e-01 78_[+3(9.35e-07)] chr6:113858637-113859137 4.84e-02 100 chr7:2555373-2555873 9.49e-01 100 chr18:9136239-9136739 1.44e-03 44_[+2(1.02e-05)]_25 chr21:32727214-32727714 3.89e-01 100 chr1:235910469-235910969 2.01e-03 4_[-1(5.75e-05)]_31_[+9(2.73e-05)]_\ 27 chr22:38283181-38283681 1.38e-02 31_[+1(6.92e-05)]_23_[+4(8.79e-05)]_\ 12 chr10:88896876-88897376 7.32e-03 100 chr5:36690431-36690931 8.16e-05 38_[-5(2.35e-05)]_6_[+2(1.04e-06)]_\ 16 chr4:87006773-87007273 4.36e-03 19_[+4(1.74e-06)]_69 chr1:181133336-181133836 4.36e-06 12_[-2(5.68e-07)]_9_[-5(2.35e-05)]_\ 39 chr7:103146431-103146931 7.18e-01 100 chr6:133241221-133241721 2.56e-07 41_[+1(1.76e-07)]_37 chr19:44915023-44915523 7.66e-07 [-3(1.49e-07)]_66_[+4(5.80e-06)] chr5:157143527-157144027 3.44e-01 100 chr2:86832296-86832796 2.27e-02 1_[-1(1.43e-05)]_77 chr3:138115555-138116055 4.20e-01 100 chr10:88880727-88881227 2.67e-01 100 chr11:94493952-94494452 8.58e-01 100 chr14:73714368-73714868 3.66e-06 22_[+1(1.01e-06)]_32_[-4(2.61e-06)]_\ 12 chr5:132866302-132866802 2.82e-04 68_[+9(7.56e-10)]_16 chr2:219500000-219500500 1.13e-06 31_[+2(2.02e-07)]_14_[+3(7.00e-06)]_\ 2 chr3:11495918-11496418 1.62e-05 39_[-1(2.03e-07)]_39 chr7:75914802-75915302 6.18e-01 100 chr1:1692870-1693370 1.12e-05 59_[+7(4.43e-13)]_13 chr19:1470830-1471330 2.21e-01 63_[-2(8.49e-06)]_6 chr6:37819255-37819755 8.11e-01 28_[-3(7.50e-05)]_50 chr19:2309499-2309999 2.08e-04 9_[-9(9.83e-05)]_52_[+3(1.72e-06)]_\ 1 chr1:54407228-54407728 4.07e-04 12_[-2(6.69e-05)]_22_[+3(7.72e-06)]_\ 13 chr12:54358178-54358678 6.43e-07 29_[-1(5.44e-08)]_4_[+2(3.49e-06)]_\ 14 chr17:39632030-39632530 6.50e-04 41_[-3(1.53e-06)]_37 chr20:35664845-35665345 5.89e-01 100 chr6:46170532-46171032 9.02e-01 100 chr19:16628362-16628862 9.01e-01 100 chr12:116658717-11665921 8.43e-01 100 chr1:91500722-91501222 2.63e-01 100 chr2:218286924-218287424 4.93e-04 15_[-4(4.46e-05)]_7_[-1(5.23e-05)]_\ 44 chr17:42658848-42659348 8.16e-01 100 chr6:31702961-31703461 8.26e-01 100 chr17:29391073-29391573 9.42e-05 66_[+2(8.97e-10)]_3 chr15:65841488-65841988 2.58e-02 17_[-4(7.08e-05)]_56_[+4(1.90e-05)]_\ 3 chr19:36838023-36838523 1.31e-01 100 chr15:72783732-72784232 1.70e-01 100 chr11:8234132-8234632 1.97e-01 100 chr1:8349068-8349568 2.43e-03 4_[+10(8.19e-05)]_48_[-5(5.26e-06)]_\ 17 chr11:111878563-11187906 1.84e-02 4_[-1(3.23e-05)]_74 chr2:99181051-99181551 2.63e-02 100 chr1:41681565-41682065 1.21e-01 76_[+1(2.93e-05)]_2 chr6:2989486-2989986 2.80e-02 76_[+10(5.86e-05)]_2 chr19:49151481-49151981 2.21e-02 100 chr5:160165463-160165963 1.23e-01 29_[+2(2.45e-05)]_40 chr10:132322541-13232304 3.14e-01 100 chrX:120560654-120561154 1.69e-02 46_[+2(1.16e-06)]_23 chr13:52652727-52653227 2.19e-04 44_[+1(3.40e-06)]_34 chr5:141618940-141619440 1.32e-01 58_[-3(2.03e-07)]_20 chr2:226031033-226031533 8.37e-01 100 chrX:119693091-119693591 5.74e-02 12_[-3(2.73e-06)]_66 chr15:68229709-68230209 2.10e-02 57_[-3(1.36e-06)]_21 chr6:28212158-28212658 4.75e-03 34_[-1(1.43e-05)]_44 chr17:8062811-8063311 3.20e-01 100 chr1:156114080-156114580 1.56e-02 23_[+3(3.05e-06)]_7_[+2(4.99e-05)]_\ 17 chrX:23743241-23743741 7.07e-02 69_[+2(4.28e-05)] chr13:75537746-75538246 1.45e-06 4_[+1(1.14e-06)]_19_[-4(8.14e-07)]_\ 43 chr17:68378306-68378806 4.73e-01 100 chr1:11478771-11479271 9.34e-01 100 chr6:104955830-104956330 3.21e-09 27_[+5(3.50e-06)]_29_[+2(2.28e-06)]_\ 4 chr19:14253943-14254443 5.59e-04 3_[-3(6.32e-07)]_28_[+2(7.18e-05)]_\ 16 chr12:64691550-64692050 4.35e-04 53_[+1(6.02e-07)]_25 chr3:73236784-73237284 1.93e-04 [-1(8.87e-07)]_13_[-4(4.33e-06)]_53 chr5:75336696-75337196 8.45e-01 100 chr1:20552023-20552523 6.44e-03 5_[+7(8.59e-07)]_67 chr6:124371514-124372014 2.79e-08 4_[-4(7.58e-08)]_45_[-1(1.53e-07)]_\ 17 chr14:39174853-39175353 2.37e-01 74_[+4(8.54e-05)]_14 chr5:136420123-136420623 4.00e-01 100 chr16:85821563-85822063 3.99e-03 9_[-9(3.92e-05)]_32_[-1(8.31e-05)]_\ 21 chr1:56415250-56415750 2.73e-02 40_[-1(8.31e-05)]_38 chr1:23558215-23558715 3.80e-01 4_[-2(1.34e-05)]_65 chr16:70065882-70066382 3.90e-26 [+8(1.67e-19)]_1_[-1(5.38e-06)]_9_\ [+10(2.11e-14)]_15 chr19:19668315-19668815 1.62e-01 8_[+7(4.43e-05)]_64 chr20:4249158-4249658 7.28e-01 100 chr7:97971930-97972430 2.64e-01 100 chr10:35090326-35090826 6.92e-02 53_[+2(1.64e-06)]_16 chr10:93437003-93437503 1.38e-12 54_[+1(7.14e-10)]_24 chr17:48814480-48814980 1.83e-04 31_[+2(1.83e-06)]_24_[-5(7.26e-05)]_\ 5 chr2:86719922-86720422 8.50e-01 100 chr2:239815770-239816270 4.01e-01 100 chr14:93043330-93043830 3.19e-02 23_[+3(9.35e-06)]_55 chr3:134485615-134486115 1.21e-01 100 chr7:103279887-103280387 7.23e-03 46_[+4(7.47e-05)]_42 chr16:23729532-23730032 1.17e-02 100 chr7:105268967-105269467 2.18e-06 4_[-1(2.34e-07)]_14_[-1(1.16e-05)]_\ 14_[+10(3.26e-05)]_2 chr5:6418628-6419128 2.01e-04 [+4(1.02e-05)]_18_[+1(1.96e-05)]_8_\ [-1(9.36e-06)]_18 chr11:68271180-68271680 2.87e-01 20_[+6(3.85e-05)]_53 chr11:57741109-57741609 5.31e-04 1_[+2(3.67e-05)]_28_[+3(8.22e-07)]_\ 18 chr18:45590012-45590512 1.51e-02 39_[-1(2.93e-05)]_39 chr17:68102451-68102951 6.79e-07 35_[+5(7.01e-06)]_17_[-3(8.50e-06)]_\ 17 chr12:53299579-53300079 1.88e-01 100 chr10:8158312-8158812 2.47e-03 25_[+1(5.28e-07)]_53 chr4:185425831-185426331 1.77e-03 40_[+1(1.29e-05)]_38 chr22:25448544-25449044 3.10e-01 100 chr2:74835171-74835671 4.00e-04 53_[+1(2.17e-05)]_13_[+4(7.58e-08)] chr11:3854605-3855105 3.76e-03 74_[+1(2.93e-05)]_4 chr6:29967201-29967701 5.55e-10 4_[-1(7.33e-12)]_45_[-1(3.23e-05)]_\ 7 chr6:79631492-79631992 6.40e-01 28_[+10(8.19e-05)]_50 chr9:95875560-95876060 5.00e-01 17_[-10(9.10e-05)]_61 chr19:36849702-36850202 1.27e-01 100 chr7:100586214-100586714 8.77e-01 100 chr16:587807-588307 1.35e-09 33_[+3(6.34e-06)]_[+6(1.44e-15)]_18 chr17:41784981-41785481 2.29e-06 78_[-1(9.28e-09)] chr6:13710174-13710674 2.22e-01 100 chr10:27241709-27242209 1.35e-01 100 chr17:7573321-7573821 1.10e-01 100 chrX:40997052-40997552 3.35e-07 48_[+5(5.21e-05)]_15_[-4(1.39e-07)]_\ 16 chr19:48510587-48511087 1.02e-03 33_[+3(1.06e-06)]_1_[-7(1.28e-05)]_\ 16 chr19:44113933-44114433 5.18e-01 100 chr18:12703737-12704237 2.12e-02 67_[+10(8.19e-05)]_11 chr7:139341095-139341595 9.63e-01 100 chr6:42890614-42891114 1.16e-03 49_[-2(8.18e-07)]_20 chrX:23937118-23937618 3.31e-06 41_[+2(4.28e-05)]_6_[+1(1.33e-07)] chr10:98134217-98134717 5.65e-02 51_[-2(1.47e-05)]_18 chr11:65491853-65492353 2.54e-02 11_[-2(2.54e-06)]_58 chr18:3520455-3520955 5.01e-05 36_[-1(3.08e-07)]_17_[+1(6.92e-05)]_\ 3 chr10:96512363-96512863 5.14e-01 100 chr1:108560659-108561159 2.30e-02 30_[-1(1.59e-05)]_48 chr12:55681514-55682014 6.08e-01 100 chr18:49813459-49813959 3.80e-01 40_[-3(8.50e-06)]_38 chr5:181244112-181244612 1.18e-07 2_[+5(1.75e-06)]_12_[-1(7.36e-08)]_\ 55 chr1:213050858-213051358 8.08e-01 100 chr8:11072038-11072538 6.62e-01 100 chr12:26153535-26154035 5.30e-01 100 chr5:173918068-173918568 3.73e-03 22_[+1(8.39e-06)]_16_[-5(3.09e-05)]_\ 31 chr20:33993476-33993976 5.06e-01 64_[+3(1.48e-05)]_14 chr9:127948253-127948753 1.55e-01 52_[+6(3.85e-05)]_21 chr6:158869358-158869858 5.73e-02 18_[-1(1.76e-05)]_60 chr12:120686366-12068686 5.77e-01 59_[+7(9.65e-05)]_13 chr19:28307502-28308002 5.66e-05 11_[-4(1.42e-06)]_39_[-5(9.28e-05)]_\ 29 chr14:21526225-21526725 2.17e-01 7_[-3(1.35e-05)]_71 chr15:82540412-82540912 6.40e-07 19_[+3(1.06e-06)]_36_[-5(5.26e-06)]_\ 14 chr12:40224970-40225470 7.13e-03 49_[-4(4.18e-05)]_39 chr7:87934490-87934990 5.94e-05 [-2(3.90e-07)]_41_[+4(9.51e-05)]_16 chr1:225463010-225463510 1.14e-01 100 chr9:34646487-34646987 9.76e-01 100 chr16:23269161-23269661 6.45e-05 18_[-5(1.93e-05)]_5_[-1(5.75e-05)]_\ 46 chr12:22625666-22626166 1.59e-05 [+3(5.50e-08)]_43_[+2(2.08e-05)]_4 chr19:4577452-4577952 1.82e-01 100 chr3:44338321-44338821 2.91e-02 3_[+7(6.64e-05)]_3_[-3(8.50e-06)]_\ 18_[-3(6.34e-06)]_4 chr19:37655782-37656282 4.01e-01 100 chr14:51651338-51651838 9.77e-01 100 chr20:25545142-25545642 1.48e-01 2_[-1(5.23e-05)]_76 chr10:71812663-71813163 9.17e-01 100 chr19:8195452-8195952 7.57e-05 49_[+2(5.68e-07)]_20 chr2:119544036-119544536 5.62e-01 100 chr19:48638254-48638754 5.60e-02 35_[-2(2.45e-05)]_34 chr5:79611882-79612382 1.70e-01 100 chr1:234503143-234503643 2.96e-05 [-1(6.31e-05)]_6_[-2(2.54e-06)]_41 chr15:84653907-84654407 1.21e-01 24_[+3(3.13e-05)]_1_[+3(2.73e-06)]_\ 31 chr3:25428153-25428653 5.04e-01 100 chr10:80289659-80290159 1.04e-01 100 chr15:65610784-65611284 3.73e-01 100 chr1:36155542-36156042 4.51e-02 22_[-7(4.25e-05)]_23_\ [-10(9.22e-05)]_5 chr17:48611848-48612348 7.12e-01 100 chr11:61161669-61162169 4.83e-03 35_[+2(2.45e-05)]_[+2(8.26e-05)]_3 chr1:150235934-150236434 3.32e-03 19_[+3(5.69e-05)]_59 chr9:129640158-129640658 2.62e-01 100 chr13:75549367-75549867 3.63e-06 13_[+1(1.14e-06)]_17_[+5(1.75e-06)]_\ 39 chr5:177006624-177007124 9.77e-01 100 chr3:9648950-9649450 2.62e-13 3_[+6(4.23e-16)]_15_[+1(1.04e-05)]_\ 33 chr2:73213784-73214284 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67_[+3(1.48e-05)]_11 chr6:148342431-148342931 2.18e-01 100 chr20:63949146-63949646 7.57e-01 100 chr8:96261518-96262018 1.41e-01 47_[+10(3.26e-05)]_31 chr9:128191524-128192024 3.45e-01 [+2(3.67e-05)]_69 chr3:50321383-50321883 6.25e-01 100 chr17:40341684-40342184 1.29e-10 55_[+2(2.68e-13)]_14 chr5:81851585-81852085 5.99e-02 41_[-2(9.48e-05)]_28 chr1:147670184-147670684 1.98e-01 73_[-9(9.95e-06)]_11 chr6:37819054-37819554 3.69e-02 49_[+3(3.65e-07)]_29 chr2:43995882-43996382 2.07e-02 76_[+1(2.65e-05)]_2 chr14:45134124-45134624 5.54e-01 100 chr12:56333645-56334145 1.54e-01 42_[-2(6.69e-05)]_27 chr18:12420882-12421382 7.70e-01 100 chr2:60555180-60555680 1.74e-01 3_[-3(5.53e-07)]_75 chr12:62817580-62818080 4.01e-03 31_[-9(5.25e-05)]_38_[+4(6.19e-05)]_\ 3 chr6:14671273-14671773 8.79e-02 3_[+5(4.00e-05)]_88 chrX:52920471-52920971 2.41e-01 11_[-4(9.02e-05)]_77 chrX:48021268-48021768 9.78e-05 38_[-9(2.64e-09)]_46 chr1:236097014-236097514 9.40e-01 100 chr2:235666285-235666785 4.19e-02 66_[-3(5.30e-05)]_12 chr5:128082974-128083474 3.75e-01 58_[+7(8.68e-05)]_14 chr4:42657137-42657637 8.20e-01 100 chr5:64768555-64769055 6.42e-04 52_[-4(7.47e-05)]_11_[-1(2.68e-07)]_\ 3 chr22:38656266-38656766 2.00e-02 100 chr1:14598278-14598778 3.30e-01 8_[-7(2.33e-05)]_64 chr6:30102101-30102601 3.57e-01 56_[-3(9.15e-05)]_22 chr16:15642677-15643177 9.65e-04 14_[+3(3.20e-08)]_64 chr12:50400294-50400794 1.38e-04 74_[-1(6.02e-06)]_4 chr7:151252011-151252511 1.08e-06 22_[-2(1.16e-08)]_1_[-2(2.64e-07)]_\ 15 chr19:40529313-40529813 5.13e-01 100 chr19:40806648-40807148 3.25e-02 27_[-7(7.05e-06)]_45 chr2:46698404-46698904 5.49e-04 24_[+2(1.60e-05)]_45 chr2:86562841-86563341 7.04e-01 100 chr19:4723720-4724220 7.20e-01 100 chr8:37693320-37693820 4.12e-09 17_[+2(5.99e-10)]_2_[+2(2.83e-09)]_\ 19 chr19:11137443-11137943 7.62e-01 100 chr10:93496029-93496529 2.05e-06 55_[+5(5.26e-06)]_20_[-4(5.45e-06)]_\ 4 chr20:37178919-37179419 8.53e-01 100 chrX:49163821-49164321 1.25e-02 44_[-3(1.91e-05)]_34 chr8:143597295-143597795 8.45e-01 100 chr15:89334716-89335216 8.02e-01 100 chr8:37453150-37453650 8.11e-01 100 chr6:35263469-35263969 1.31e-07 17_[+2(8.49e-06)]_28_[+1(1.53e-08)]_\ 2 chr14:21476279-21476779 1.93e-01 100 chr1:6427440-6427940 6.96e-01 100 chr15:71252121-71252621 2.29e-04 31_[-5(1.93e-05)]_34_[-1(1.43e-05)]_\ 4 chr1:94325327-94325827 2.71e-02 8_[-1(5.75e-05)]_70 chr22:18001426-18001926 1.79e-04 35_[-10(3.26e-05)]_8_[-4(1.21e-05)]_\ 23 chr5:53478390-53478890 9.32e-05 35_[-2(6.94e-09)]_2_[-2(2.89e-05)]_\ 1 chr5:115841478-115841978 9.86e-01 100 chr6:31702759-31703259 3.89e-01 100 chrX:153245241-153245741 8.17e-03 46_[-1(2.17e-05)]_32 chr15:88911549-88912049 2.85e-01 100 chr2:38875536-38876036 9.83e-01 100 chr19:17075296-17075796 7.39e-02 20_[-3(6.54e-05)]_58 chr19:14496073-14496573 1.06e-03 69_[+7(1.36e-11)]_3 chr19:41859650-41860150 5.81e-02 28_[+6(5.69e-05)]_45 chr10:110567295-11056779 1.27e-01 44_[-1(3.23e-05)]_34 chr1:7961312-7961812 9.30e-01 100 chr14:75278393-75278893 7.51e-01 100 chr3:16264572-16265072 3.31e-01 100 chr10:72096255-72096755 1.06e-05 13_[-4(3.47e-06)]_18_[-2(1.12e-05)]_\ 4_[+1(3.82e-06)] chr17:59964703-59965203 2.27e-03 22_[+1(2.69e-06)]_56 chr18:26090508-26091008 9.84e-01 100 chr19:49765398-49765898 1.59e-02 26_[+2(1.47e-05)]_43 chr1:45550706-45551206 2.17e-02 23_[+2(5.78e-06)]_46 chr17:39199947-39200447 1.03e-05 11_[+1(8.87e-07)]_36_[-2(9.21e-07)] chr11:47268964-47269464 6.52e-01 100 chr19:40284930-40285430 2.83e-01 12_[-3(3.79e-06)]_66 chr10:101818356-10181885 3.02e-01 100 chrX:52995536-52996036 1.63e-01 34_[-8(7.70e-05)]_35 chr18:48946358-48946858 8.33e-01 100 chr16:68645654-68646154 6.17e-02 46_[-3(5.74e-06)]_32 chr6:31497604-31498104 8.58e-02 27_[-3(8.50e-06)]_51 chr1:18902465-18902965 2.75e-03 26_[-1(3.56e-05)]_52 chr9:15510879-15511379 1.40e-05 56_[-2(6.94e-09)]_13 chr22:19479061-19479561 2.50e-03 73_[+1(1.04e-05)]_5 chr3:69250019-69250519 1.38e-01 15_[-3(1.13e-05)]_63 chr12:55830445-55830945 6.38e-01 100 chr20:43590536-43591036 1.14e-05 17_[-1(8.87e-07)]_22_[+4(1.09e-06)]_\ 27 chr10:101130820-10113132 2.48e-04 49_[+2(7.02e-06)]_20 chr20:2102233-2102733 1.67e-02 2_[-4(1.09e-06)]_59_[+4(8.50e-06)]_\ 15 chr16:4624290-4624790 1.29e-02 45_[-4(4.88e-05)]_43 chr17:32114491-32114991 9.21e-07 33_[+5(5.26e-06)]_21_[+8(4.90e-06)]_\ 6 chr16:20900407-20900907 3.62e-05 16_[-2(2.54e-06)]_53 chr10:97334620-97335120 8.09e-01 100 chr17:4948553-4949053 1.59e-02 65_[-2(1.12e-05)]_4 chr9:132409803-132410303 8.08e-01 100 chr9:124771258-124771758 3.15e-02 15_[-1(1.43e-05)]_27_\ [-10(3.26e-05)]_14 chr20:47360958-47361458 2.29e-05 82_[-4(2.24e-06)]_6 chr12:106302392-10630289 4.48e-01 100 chr19:44212354-44212854 4.09e-03 18_[-3(1.03e-05)]_60 chr6:24720790-24721290 6.44e-07 22_[-1(4.04e-07)]_19_[+5(3.50e-06)]_\ 28 chr2:85538672-85539172 2.69e-04 31_[+2(3.86e-06)]_38 chr1:1692630-1693130 2.51e-12 29_[+7(1.11e-10)]_13_[+4(3.15e-08)]_\ 18 chr19:30662365-30662865 2.25e-06 4_[-5(5.26e-06)]_52_[+1(3.08e-07)]_\ 13 chr19:49118660-49119160 3.55e-01 100 chr1:154936879-154937379 6.56e-05 34_[-1(1.33e-07)]_44 chr20:543730-544230 5.78e-04 33_[-4(1.82e-05)]_55 chr17:7012233-7012733 9.25e-01 100 chr22:46013662-46014162 2.31e-03 69_[+2(8.18e-07)] chr15:70494593-70495093 3.63e-05 16_[-2(4.28e-06)]_17_[+3(4.67e-06)]_\ 14 chr12:53727103-53727603 3.09e-01 100 chr10:110210833-11021133 4.20e-07 35_[+1(6.59e-09)]_43 chr1:155562835-155563335 6.49e-02 21_[+3(7.01e-05)]_29_[+3(1.53e-06)]_\ 6 chr5:112160528-112161028 4.54e-01 100 chr20:2101992-2102492 4.09e-01 100 chr19:1018805-1019305 2.98e-01 100 chr19:10194810-10195310 5.59e-02 10_[-2(1.54e-07)]_59 chr11:86244406-86244906 4.27e-01 100 chr11:61971494-61971994 1.01e-03 [+1(4.29e-06)]_78 chr3:9792639-9793139 2.52e-04 79_[+5(1.75e-06)]_12 chrX:53422169-53422669 8.78e-01 100 chr7:21945800-21946300 9.07e-01 100 chr19:42302339-42302839 2.95e-02 72_[-3(1.94e-06)]_6 chr5:1327311-1327811 7.37e-01 100 chrX:49166316-49166816 9.28e-04 24_[-7(2.18e-10)]_48 chr19:45406264-45406764 3.09e-01 100 chr10:97318871-97319371 5.03e-01 64_[+3(1.23e-05)]_14 chr16:29961592-29962092 6.20e-01 100 chr17:7686130-7686630 4.71e-04 2_[+4(9.02e-05)]_16_[+2(1.34e-07)]_\ 39 chr19:47778274-47778774 2.33e-01 64_[-2(1.60e-05)]_5 chr1:46303252-46303752 5.35e-02 100 chr11:126062945-12606344 8.63e-01 100 chr17:51260024-51260524 1.32e-01 100 chr15:67254500-67255000 4.35e-01 1_[+10(9.22e-05)]_77 chr6:110179586-110180086 4.18e-01 100 chr1:19596261-19596761 6.72e-04 36_[-2(4.42e-07)]_33 chr2:95165692-95166192 3.11e-01 43_[-2(3.67e-05)]_26 chr3:111859329-111859829 3.12e-04 28_[+7(1.20e-10)]_44 chr20:54207721-54208221 3.92e-02 49_[-3(7.01e-05)]_29 chr19:30225181-30225681 2.05e-03 1_[-3(9.15e-05)]_21_[-8(2.28e-05)]_\ 25 chr5:134371037-134371537 9.61e-02 42_[-1(4.32e-05)]_36 chr3:170222009-170222509 4.19e-03 100 chr9:92325543-92326043 7.21e-01 100 chr16:14974616-14975116 2.82e-26 [-10(2.11e-14)]_9_[+1(5.38e-06)]_1_\ [-8(1.67e-19)]_15 chr17:35808976-35809476 2.56e-03 36_[-1(9.09e-05)]_42 chr5:138337771-138338271 2.23e-01 100 chr17:7440368-7440868 4.47e-01 100 chr6:82363398-82363898 2.46e-02 81_[-5(4.00e-05)]_10 chr5:90558387-90558887 9.91e-01 100 chr7:107563558-107564058 4.12e-01 30_[+3(5.69e-05)]_48 chr10:104274753-10427525 6.72e-01 10_[-3(2.26e-05)]_68 chr19:6737183-6737683 9.82e-01 100 chr5:173917863-173918363 1.44e-05 10_[-4(3.00e-06)]_78 chr6:109382412-109382912 2.66e-02 31_[+9(3.51e-05)]_53 chr1:200891142-200891642 6.83e-02 34_[+3(1.20e-06)]_44 chr17:58513625-58514125 2.93e-03 21_[-3(8.50e-06)]_57 chr10:92243236-92243736 6.08e-07 28_[-1(8.54e-08)]_50 chr19:39403243-39403743 2.15e-01 74_[-3(1.74e-07)]_4 chr3:11272280-11272780 7.23e-01 100 chr19:49676342-49676842 4.90e-02 58_[+2(1.46e-06)]_11 chr19:12880467-12880967 8.70e-02 100 chr17:41734535-41735035 1.09e-03 27_[-3(1.72e-06)]_12_[-2(5.78e-05)]_\ 8 chr19:46600587-46601087 4.30e-01 100 chr7:100673346-100673846 4.14e-01 100 chr1:11012277-11012777 3.65e-03 10_[+1(6.73e-06)]_68 chr14:92121566-92122066 2.12e-07 9_[+4(3.43e-05)]_24_[+4(3.15e-08)]_\ 9_[-1(6.92e-05)]_12 chr19:55166705-55167205 1.21e-08 14_[+1(2.05e-11)]_1_[+4(2.29e-05)]_\ 51 chr1:150272250-150272750 2.82e-13 10_[-2(2.55e-11)]_12_[+1(1.81e-08)]_\ 25 chr18:3247397-3247897 3.21e-05 33_[+1(3.40e-06)]_2_[+2(6.42e-07)]_\ 12 chr19:43619506-43620006 9.96e-01 100 chr16:21952913-21953413 4.94e-03 75_[+1(4.76e-05)]_3 chr12:52069597-52070097 9.93e-01 100 chr19:40598103-40598603 7.85e-04 5_[+3(8.02e-05)]_27_[+2(4.42e-07)]_\ 15 chr17:17237058-17237558 9.97e-01 100 chr19:38336463-38336963 1.04e-04 32_[-2(6.22e-05)]_8_[-1(2.65e-05)]_\ 7 chr5:150904880-150905380 5.86e-02 100 chr22:29267869-29268369 1.40e-01 100 chr6:113971048-113971548 2.22e-03 58_[-5(1.93e-05)]_33 chr1:27490196-27490696 5.96e-03 64_[+4(3.81e-05)]_24 chr14:21103659-21104159 7.61e-01 100 chr21:42879184-42879684 8.81e-01 100 chr19:10332809-10333309 2.94e-03 11_[+3(1.61e-05)]_67 chr1:155688671-155689171 3.86e-01 42_[+3(4.93e-05)]_36 chr19:3500538-3501038 4.90e-01 100 chr12:53626007-53626507 8.89e-03 [-2(7.71e-05)]_24_[-5(1.93e-05)]_36 chrX:47218293-47218793 4.28e-01 100 chr21:33491409-33491909 7.65e-01 100 chr19:36378822-36379322 6.26e-01 29_[+3(1.35e-05)]_49 chr12:120302163-12030266 6.45e-04 78_[+4(2.18e-05)]_10 chr12:109999018-10999951 4.52e-01 100 chr19:35643433-35643933 7.14e-01 100 chr21:42973858-42974358 9.83e-01 100 chr19:35248583-35249083 2.29e-03 52_[+2(2.08e-05)]_17 chr16:81006804-81007304 3.90e-01 100 chr3:13648331-13648831 9.44e-03 39_[-2(6.22e-05)]_7_[-3(6.34e-06)]_\ 1 chr16:31179733-31180233 6.50e-04 10_[-4(1.27e-05)]_78 chr16:29863163-29863663 3.15e-05 17_[-1(8.87e-07)]_61 chr10:125823147-12582364 4.60e-06 9_[-1(2.68e-07)]_69 chr19:35248296-35248796 2.38e-01 100 chr1:46132552-46133052 2.96e-02 60_[-5(9.28e-05)]_31 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kali ********************************************************************************