# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:55 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:57 PDT 2018)
#        host: kadru
#        when: Thu May 10 16:45:59 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.278 C 0.219 G 0.236 T 0.267


MOTIF GAAAGGMA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAGGMA   TKCCTTTC        285        100   3.5e-031   6.7e-027
#         GAAAGGAA   TTCCTTTC        272         96   4.8e-029   9.3e-025
#         GAAAGGCA   TGCCTTTC         21          4   4.0e-004   7.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 986 E= 6.7e-027
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.978702 0.021298 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GRGAAAGB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GRGAAAGB   VCTTTCYC        259        124   3.0e-017   5.8e-013
#         GGGAAAGG   CCTTTCCC        105         50   1.4e-006   2.6e-002
#         GAGAAAGT   ACTTTCTC         35          8   1.5e-005   2.9e-001
#         GAGAAAGG   CCTTTCTC        108         63   1.3e-004   2.5e+000
#         GGGAAAGT   ACTTTCCC         21          4   4.0e-004   7.7e+000
#         GAGAAAGC   GCTTTCTC         23          6   1.0e-003   2.0e+001
#         GGGAAAGC   GCTTTCCC         14          3   6.1e-003   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 431 E= 5.8e-013
0.000000 0.000000 1.000000 0.000000
0.491879 0.000000 0.508121 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.099768 0.756381 0.143852


MOTIF ACTYTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACTYTC     GARAGT        168         86   4.1e-009   7.7e-005
#           ACTTTC     GAAAGT         82         32   5.0e-007   9.3e-003
#           ACTCTC     GAGAGT        100         58   2.2e-004   4.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 322 E= 7.7e-005
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.608696 0.000000 0.391304
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 16.13 seconds