# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PATZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PATZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PATZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PATZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:58 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PATZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:00 PDT 2018)
#        host: kali
#        when: Thu May 10 17:15:40 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.167 C 0.333 G 0.339 T 0.161


MOTIF GCCCCCD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GCCCCCD    HGGGGGC        290        139   4.3e-020   1.2e-015
#          GCCCCCA    TGGGGGC        123         44   1.9e-011   5.2e-007
#          GCCCCCT    AGGGGGC        101         46   7.9e-007   2.2e-002
#          GCCCCCG    CGGGGGC        113         61   1.3e-005   3.6e-001

letter-probability matrix: alength= 4 w= 7 nsites= 369 E= 1.2e-015
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.360434 0.000000 0.344173 0.295393


MOTIF CCCCDCCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCDCCC   GGGHGGGG        167         77   5.9e-011   1.6e-006
#         CCCCTCCC   GGGAGGGG         77         31   2.1e-006   5.9e-002
#         CCCCGCCC   GGGCGGGG         62         29   2.1e-004   5.9e+000
#         CCCCACCC   GGGTGGGG         52         23   3.7e-004   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 197 E= 1.6e-006
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.274112 0.000000 0.319797 0.406091
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TGAGTSA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TGAGTSA    TSACTCA         45          7   1.9e-008   5.2e-004
#          TGAGTCA    TGACTCA         34          5   8.5e-007   2.4e-002
#          TGAGTGA    TCACTCA         14          2   2.0e-003   5.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 52 E= 5.2e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.711538 0.288462 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF MGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       MGGAA      TTCCK        228        149   5.8e-007   1.6e-002
#            AGGAA      TTCCT        155        100   6.6e-005   1.8e+000
#            CGGAA      TTCCG         99         65   2.7e-003   7.4e+001

letter-probability matrix: alength= 4 w= 5 nsites= 312 E= 1.6e-002
0.599359 0.400641 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCGCKC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CGCGCKC    GMGCGCG         59         19   1.6e-006   4.2e-002
#          CGCGCTC    GAGCGCG         33          8   4.3e-005   1.1e+000
#          CGCGCGC    GCGCGCG         33         13   1.9e-003   5.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 63 E= 4.2e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.523810 0.476190
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 31.50 seconds