******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/OVOL3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:45416695-45417195 1.0000 100 chr15:67768516-67769016 1.0000 100 chr17:7242792-7243292 1.0000 100 chr10:73252445-73252945 1.0000 100 chr17:71176883-71177383 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1.0000 100 chr13:37046971-37047471 1.0000 100 chr10:15409299-15409799 1.0000 100 chr18:50629059-50629559 1.0000 100 chr21:33136808-33137308 1.0000 100 chr6:21264348-21264848 1.0000 100 chr6:34757300-34757800 1.0000 100 chr19:17606257-17606757 1.0000 100 chr5:175378374-175378874 1.0000 100 chr5:14168879-14169379 1.0000 100 chr8:17766221-17766721 1.0000 100 chr10:50605400-50605900 1.0000 100 chr1:234723875-234724375 1.0000 100 chr1:52955586-52956086 1.0000 100 chr5:124599574-124600074 1.0000 100 chr2:156781585-156782085 1.0000 100 chr19:37078198-37078698 1.0000 100 chr10:72320662-72321162 1.0000 100 chr6:4109404-4109904 1.0000 100 chr3:31532209-31532709 1.0000 100 chr12:54033463-54033963 1.0000 100 chr14:36835061-36835561 1.0000 100 chr6:2985832-2986332 1.0000 100 chr5:115842914-115843414 1.0000 100 chr5:83265177-83265677 1.0000 100 chr8:25998503-25999003 1.0000 100 chr1:45499987-45500487 1.0000 100 chr17:70661303-70661803 1.0000 100 chr1:86774456-86774956 1.0000 100 chr12:50195792-50196292 1.0000 100 chr1:85274843-85275343 1.0000 100 chr5:124735004-124735504 1.0000 100 chr9:128656641-128657141 1.0000 100 chr7:116218157-116218657 1.0000 100 chr4:70778943-70779443 1.0000 100 chr7:100874695-100875195 1.0000 100 chr19:51571000-51571500 1.0000 100 chr21:34857057-34857557 1.0000 100 chr1:214439362-214439862 1.0000 100 chr12:4538394-4538894 1.0000 100 chr1:40979693-40980193 1.0000 100 chr19:36215175-36215675 1.0000 100 chr1:110338871-110339371 1.0000 100 chr5:36642009-36642509 1.0000 100 chr17:48407085-48407585 1.0000 100 chr7:133492163-133492663 1.0000 100 chr10:61898228-61898728 1.0000 100 chr1:175023152-175023652 1.0000 100 chr10:75379153-75379653 1.0000 100 chr19:28425304-28425804 1.0000 100 chr19:39996916-39997416 1.0000 100 chr1:223518508-223519008 1.0000 100 chr6:151451971-151452471 1.0000 100 chr19:54115417-54115917 1.0000 100 chr8:37302594-37303094 1.0000 100 chr12:123232802-12323330 1.0000 100 chr6:43321930-43322430 1.0000 100 chr14:49620614-49621114 1.0000 100 chr5:38783020-38783520 1.0000 100 chr1:76294417-76294917 1.0000 100 chr17:61335991-61336491 1.0000 100 chr19:5903610-5904110 1.0000 100 chr3:181328942-181329442 1.0000 100 chr6:42929057-42929557 1.0000 100 chr16:15590841-15591341 1.0000 100 chr5:68240106-68240606 1.0000 100 chr3:159765602-159766102 1.0000 100 chr5:59303215-59303715 1.0000 100 chr3:129399378-129399878 1.0000 100 chr6:112956680-112957180 1.0000 100 chr10:77287712-77288212 1.0000 100 chr6:82260135-82260635 1.0000 100 chr16:25049578-25050078 1.0000 100 chr7:99504963-99505463 1.0000 100 chr1:66542681-66543181 1.0000 100 chr16:29805344-29805844 1.0000 100 chr1:174999241-174999741 1.0000 100 chr15:74099994-74100494 1.0000 100 chr10:17228249-17228749 1.0000 100 chr16:30610193-30610693 1.0000 100 chr8:11863798-11864298 1.0000 100 chr22:24310921-24311421 1.0000 100 chr19:16197636-16198136 1.0000 100 chr2:47176421-47176921 1.0000 100 chr19:43596180-43596680 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/OVOL3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/OVOL3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/OVOL3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.276 C 0.224 G 0.224 T 0.276 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/OVOL3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.269 C 0.231 G 0.231 T 0.269 ******************************************************************************** ******************************************************************************** MOTIF TAAAYAMAHAMANMAATWAAHA MEME-1 width = 22 sites = 98 llr = 987 E-value = 1.7e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 188a284748462675267738 pos.-specific C 2:2:4:31214:34222:2:31 probability G :1:::11::1212:1111::1: matrix T 7:::32223::33:12531221 bits 2.1 1.9 * 1.7 * 1.5 * Relative 1.3 * Entropy 1.1 *** * * * (14.5 bits) 0.8 *** * * * * ** * 0.6 **** * * * * ** ** * 0.4 ****** * *** ** *** * 0.2 ************ ********* 0.0 ---------------------- Multilevel TAAACAAAAAAACAAATAAAAA consensus C C T C T CTTC CATCTC sequence A C G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:40567075-40567575 + 27 2.69e-10 gtctcaaaaa taaataaataaataaataaata aataaataaa chr19:35881939-35882439 + 37 2.69e-10 aaataaaaaa taaataaataaataaataaata aataaataaa chr5:32367213-32367713 + 52 2.69e-10 ataaataaag taaataaataaataaataaata aataactcac chr1:225654695-225655195 + 35 2.69e-10 atctaaaaaa taaataaataaataaataaata aataaataaa chr19:31332880-31333380 + 29 2.69e-10 tgtctcaCaa taaataaataaataaataaata aataaataaa chr5:34182252-34182752 + 26 2.69e-10 ccATCACaaa taaataaataaataaataaata aataaataaa chr6:133248613-133249113 - 57 3.45e-09 AATGCAAAAA CAAACAAACAAAAAAAAAAACA AAATAAAACA chr1:28648534-28649034 - 77 1.80e-08 TC TAAAAAAAAAAAAAAACACACA CAGAATCTCT chr18:24063681-24064181 - 9 1.22e-07 CAAAGCAAGG CAAACAAAAAGTCAAATTATAA CAGACACT chr1:167658587-167659087 - 8 1.67e-07 ACACTAGAGA CAAAAAAAAAATACCATAAAAA GGGAAAT chr1:184037557-184038057 - 15 1.67e-07 TACCGTTATG TACACACACACACACACACACA CACACACACA chr10:101442053-10144255 - 46 1.67e-07 TTATCTCATT TACACACACACACACACACACA CATACACACA chr5:160008691-160009191 + 4 2.63e-07 aaa taaataaataGTGAAACGAACA CCACAGGGAC chr1:3403743-3404243 + 63 7.04e-07 TTTCTTTACA TAAACACATAAATCACAATTAA CAACGGGGGA chr16:12120440-12120940 - 22 7.04e-07 CCCAGGGACC CAAACATAAACACAGACACACA GCCAGATGAC chr9:13956057-13956557 - 49 7.04e-07 CTTTCGCTCA TAAAAATAAAAACCATCTCACA TCATCTGTCT chr6:2028570-2029070 - 28 9.18e-07 GCCTCTATTA TGAACACATAAATCATTTCATA AAACGGTGAG chr8:109611182-109611682 + 61 1.05e-06 GCCATAAAGA TAAACACTAAGTCCACTTATCA CATTTAAGCT chr6:129183810-129184310 - 68 1.05e-06 AAAAGCAATA TAAACAACAACAAAAAGTAATC CAGTAGGTAT chr6:16757291-16757791 + 66 1.05e-06 ACCAACCACA TAAACTCACAAAACGGTAAAAA CTCATAAACC chr20:18430092-18430592 + 70 1.05e-06 CTAAGCCTCA TAAATTCTAAGAACCATAAACA TGACTGAAG chr1:214520527-214521027 + 49 1.53e-06 AAGTGCCTTG TAAATAAATACAAAACATTTCA CCAGTTCACT chr9:16953986-16954486 - 46 1.73e-06 ACAAACCCAG TGAACTCTTAAATAAAGAAACA AGTGAGCCCA chr1:244719602-244720102 - 55 1.96e-06 GAAACTCAAG AAAACAAACAGCCCAATTAAAA AGTAGGCAAA chr6:150418334-150418834 - 29 1.96e-06 ATACTTGAAC TGAAAACAAAGAGAAGTAATCA TTTTTTATAG chr2:144430764-144431264 + 66 2.21e-06 CCCAACTCTC CAGAAACACACACAAAAAAACA AGTTAGAACC chr6:4320842-4321342 - 11 2.80e-06 CATTGCTATG TAAACAGTAAGAAACATTATCA TGATTCATGT chr6:137853605-137854105 - 24 2.80e-06 AACACACACT TAAAAAATTAAAGCATGACAAA TGCACACTTA chr12:82817323-82817823 - 37 2.80e-06 GCACCAGTAG TAAACACTGACACACACACACA CAAAGTGATC chr1:16164138-16164638 + 23 3.14e-06 acaaatttgt taaatgaatgaGCAAATAAACA TAGTGGCTTC chr1:237166750-237167250 + 44 3.14e-06 aatgaagcaa caaataaacaaacaaaAGCAAC CTCTTCACTG chr11:120346987-12034748 - 78 3.14e-06 A CACACACACACACACAGACAGA GAGAGAGAGA chr11:62841252-62841752 + 66 3.52e-06 ACTAGCGATA AAAACACCTAATCCAACTCAAA CAACAAGAAC chr16:22386875-22387375 - 1 3.52e-06 ACAGAAGTCT TAAACACCCAAATAAAGCAAAA chr1:66542681-66543181 - 11 3.95e-06 TACGCCGTTA TACAAATAAACAGCACTTAACT AGGAGTCAAG chr15:101372153-10137265 + 19 3.95e-06 TGAGTCATAA AAAACAATCAAAACAGTTATAA ACAGTGATGT chr3:61634615-61635115 - 21 3.95e-06 TTACACTGGC AAAACAAACACAGCATATCAGA TATGGCATCA chr6:43321930-43322430 + 39 4.42e-06 cactttgaga tgaataaaaacaaaaccacaac acttcaaaac chr17:61335991-61336491 - 5 4.93e-06 AGCAAACAGC CAAATAACAAATCCACTTTACA GATC chrX:23944238-23944738 - 40 4.93e-06 AATATGACAA TGCATATAAACAGCTATAAAAA TGTTTAAAGT chr3:17730384-17730884 + 66 5.50e-06 acaaaaatca taaaatcatgagtaaataaata ttactgttgt chr17:70661784-70662284 + 75 5.50e-06 GCAATGTTGT TAAATAAAATGTGCAAAAAAGA AAAT chr22:40711453-40711953 + 9 5.50e-06 ctccatct caaacaaaacagaacaaaaaaa CCAagtattt chr2:205280611-205281111 - 17 5.50e-06 CACTTGGCCC TGAATTAAAAGAACATAAAATA CTGTATTTAT chr2:24540013-24540513 + 9 6.13e-06 CTTAGGAT CAAATAAAAAGTTACTAGAACA GAGTTCTAAA chr5:115701960-115702460 + 57 6.13e-06 AAGAGTGCTG AGAAAATAAAGACAACTAATAA AACTGCAAAT chr1:8701170-8701670 + 36 7.59e-06 ATACGCTATA AAAACACACACACAAAGGAAGT GGTACAGCTA chr5:6419244-6419744 + 31 7.59e-06 CGTCATAGTG TAAATAAAAAATTATGTACTAA ATAAGATGAG chr9:18976702-18977202 + 9 7.59e-06 AACGACCC CACAAAACCACAAACCAAaaca aatgtgaagc chr8:11863798-11864298 + 28 8.42e-06 cctcagtaga taaacacactgggcacttaaca caaatggact chr5:98771363-98771863 + 7 8.42e-06 CGGCTG AACACTTATGCAGCAATAAAAA GTGAATTGTT chr11:46948444-46948944 + 54 1.03e-05 acaatgctgg tgcacagacagtaaacaaaaaa TAATTTAGCC chr5:139247869-139248369 - 20 1.14e-05 CACTGTTATG TAAATATAATCTAACAGAAATA TGATATCTAA chr13:46674967-46675467 + 67 1.14e-05 CAGGCAGCTG TAAAAACAAACACACTGTTAGA ACACAATAAA chr6:82260135-82260635 - 34 1.26e-05 GTTAAGTGGT TGAATATCAAATTCAAGTCACA ACTAGAAGGT chr7:133492163-133492663 - 72 1.26e-05 ACAGAAC TAAACACAACCAAAAGAGAACC ATAAAAGCAT chr5:83265177-83265677 - 34 1.39e-05 ACCAGTTAGG TAAACATAGAGTGAAGCTAATA AAAACCTATC chr13:44218409-44218909 - 13 1.39e-05 GGGAATACGT TAAATAAATACTGACACAATGC AAAGCTGGGA chr10:23408434-23408934 - 18 1.54e-05 TTTTATCAGT TTAACACACAATTAACGTCATA CATAAGTACA chr7:83267082-83267582 - 57 1.54e-05 AAAAAAATGT TTAACAAATAAAACATTGTAAA ACCTTCAGCT chr4:20294406-20294906 - 39 1.54e-05 TTTACATGTG TAAATTAAAAGGCCATATATAA CTTCTCGTAA chr19:34184733-34185233 - 54 1.69e-05 GAAGGTTTAT TACAAAGCAAAACACATTTACA AAGGATCTCT chr12:71627464-71627964 + 21 1.69e-05 TACCATAGGT AAAAAAACCTCAAACATAAAAA TATAAATGTG chr5:38783020-38783520 + 23 1.86e-05 AAGCACTGCC AACACAAACAGTTCTCTTAAAA CGTTATGTAG chr9:1034224-1034724 + 66 1.86e-05 AGAAGTTAAA CAAACAACCCATTAGATTAAAA ATAACGGTGT chr16:25049578-25050078 - 78 2.25e-05 G TAAATACATAAACCGTTAACAC AGTTTTTTAT chr11:116853580-11685408 - 2 2.25e-05 TTTGACTTTG CAAATAAACACAGCAGCATAAC C chr19:33293253-33293753 + 38 2.25e-05 TTGCTCTAGC AAAACTCAGGAATCAAATAAAA CGTGTTTGCA chr5:42994693-42995193 + 17 2.25e-05 cggattaaaa cacattaaaacGTCACAACACA TTTAAACAGA chr15:81966569-81967069 + 47 2.25e-05 taacagacac tgaacatttaatccacttaact gtttggctac chr16:53611141-53611641 - 18 2.46e-05 CAGTAAATCC CTCAAATACAAAGCAATAAAGA CCGTTGACTT chr7:135716553-135717053 + 31 2.46e-05 tccttctctt taaaatgaagataaaaataata gcaccttcac chr20:46085116-46085616 + 49 2.46e-05 gaggcacaag tacacagataattacaatacaa tctaaAGTGG chr7:157358401-157358901 - 44 2.70e-05 ACTGTGAAAA TGCATTACCACAGAAATAAAAC TACTTACGCC chr15:57090408-57090908 - 67 2.70e-05 CGGGGACTAA AAAAATCATCAATCACTGAACA TTTATCATTC chr17:81583883-81584383 - 24 2.95e-05 ACATGCCTTG TAAACAAAACCTGCACCAATAT TTGTCTGAGG chr8:17674922-17675422 + 31 2.95e-05 CCTTGTCCCA TAAAATTTAACAACAACAACAA AAAGCTCTTA chr11:17277202-17277702 - 21 3.23e-05 AAGACCGTTG CAAACACCAACCACAATAACCA TATTTGCTCA chr7:158615954-158616454 - 72 3.52e-05 CAGATAT CAAATAAAAACACAGCCACAGT ACCGCTATTA chr14:32134480-32134980 - 64 3.84e-05 AAGCAAAAGA CAAACACATGAAGACATACTAT GATGAGACAT chr12:104505510-10450601 - 71 3.84e-05 ATTAAAGC TGAACTGCTAAGCAAATAATAA CGGAGTGAAA chr6:47456561-47457061 - 65 3.84e-05 TGTGGTTATA TATAAATAAACACCAGTGAATA AAGATGGGTA chr1:184935851-184936351 + 16 3.84e-05 TTGAAAGGTT TACACTTATGCTAAACTAATTA AGTAACATGA chr5:72246889-72247389 + 49 4.19e-05 tcagttaata taaatgcatgaatcatgtaaga caataggTAC chr5:96745703-96746203 - 56 4.19e-05 CAGAGAAAAG TAAATAAAAGATCCTTTGAAGA CAGTAAGCAC chr9:123678551-123679051 - 3 4.19e-05 GGCTGATTGA AACATATTAACATAAGTGATAA TA chr3:130425510-130426010 - 1 4.96e-05 GAAAGGCCCA AAGACAATTACACAGAAAAATA chr13:37046971-37047471 + 55 5.86e-05 GGAAGTGCTA TAAACTCATAAATCACTTCTCG GGGGAAGAAG chr10:10313401-10313901 - 73 6.35e-05 TTTATT TACATAACTGCTTCTAATAACA GAATGTAAAT chr6:12816147-12816647 - 45 6.35e-05 AAACCCTAGA TACACACCCACAGAGTTTAATT ACATAAGACT chr14:96574793-96575293 - 37 6.89e-05 TCCTCATCTG TAAATGGTGACACCAATGAATA TGTCAAATCT chr6:29552430-29552930 + 18 7.46e-05 gacaaataga taaaagcaaagataatatttca ttggttacag chr22:24310921-24311421 - 34 8.07e-05 CAAAGTTAAA TACACATAACGGCACCAAATCA TAAACTTTGC chr6:124487969-124488469 + 7 9.42e-05 TTTAGA ATAATAATAAGACAAGGAATAA TGGCATCCTA chr1:125179947-125180447 - 39 1.02e-04 GTATCAACAC CAAACGGAAAAAAACGGAATTA TCGAATGGAA chr15:65512833-65513333 + 21 1.02e-04 ATAAAATTGT CAAAAATAACGTGCATGTAATA ACCTTCCTAG chr10:35890243-35890743 + 39 1.27e-04 AAAGCAGTTA TACAATCTTACACCAGCACACC AACTTCAGTG chr10:118740022-11874052 + 49 2.22e-04 ggcccttccg tgaatatttacatagctataat gtaaatatgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40567075-40567575 2.7e-10 26_[+1]_52 chr19:35881939-35882439 2.7e-10 36_[+1]_42 chr5:32367213-32367713 2.7e-10 51_[+1]_27 chr1:225654695-225655195 2.7e-10 34_[+1]_44 chr19:31332880-31333380 2.7e-10 28_[+1]_50 chr5:34182252-34182752 2.7e-10 25_[+1]_53 chr6:133248613-133249113 3.5e-09 56_[-1]_22 chr1:28648534-28649034 1.8e-08 76_[-1]_2 chr18:24063681-24064181 1.2e-07 8_[-1]_70 chr1:167658587-167659087 1.7e-07 7_[-1]_71 chr1:184037557-184038057 1.7e-07 14_[-1]_64 chr10:101442053-10144255 1.7e-07 45_[-1]_33 chr5:160008691-160009191 2.6e-07 3_[+1]_75 chr1:3403743-3404243 7e-07 62_[+1]_16 chr16:12120440-12120940 7e-07 21_[-1]_57 chr9:13956057-13956557 7e-07 48_[-1]_30 chr6:2028570-2029070 9.2e-07 27_[-1]_51 chr8:109611182-109611682 1e-06 60_[+1]_18 chr6:129183810-129184310 1e-06 67_[-1]_11 chr6:16757291-16757791 1e-06 65_[+1]_13 chr20:18430092-18430592 1e-06 69_[+1]_9 chr1:214520527-214521027 1.5e-06 48_[+1]_30 chr9:16953986-16954486 1.7e-06 45_[-1]_33 chr1:244719602-244720102 2e-06 54_[-1]_24 chr6:150418334-150418834 2e-06 28_[-1]_50 chr2:144430764-144431264 2.2e-06 65_[+1]_13 chr6:4320842-4321342 2.8e-06 10_[-1]_68 chr6:137853605-137854105 2.8e-06 23_[-1]_55 chr12:82817323-82817823 2.8e-06 36_[-1]_42 chr1:16164138-16164638 3.1e-06 22_[+1]_56 chr1:237166750-237167250 3.1e-06 43_[+1]_35 chr11:120346987-12034748 3.1e-06 77_[-1]_1 chr11:62841252-62841752 3.5e-06 65_[+1]_13 chr16:22386875-22387375 3.5e-06 [-1]_78 chr1:66542681-66543181 3.9e-06 10_[-1]_68 chr15:101372153-10137265 3.9e-06 18_[+1]_60 chr3:61634615-61635115 3.9e-06 20_[-1]_58 chr6:43321930-43322430 4.4e-06 38_[+1]_40 chr17:61335991-61336491 4.9e-06 4_[-1]_74 chrX:23944238-23944738 4.9e-06 39_[-1]_39 chr3:17730384-17730884 5.5e-06 65_[+1]_13 chr17:70661784-70662284 5.5e-06 74_[+1]_4 chr22:40711453-40711953 5.5e-06 8_[+1]_70 chr2:205280611-205281111 5.5e-06 16_[-1]_62 chr2:24540013-24540513 6.1e-06 8_[+1]_70 chr5:115701960-115702460 6.1e-06 56_[+1]_22 chr1:8701170-8701670 7.6e-06 35_[+1]_43 chr5:6419244-6419744 7.6e-06 30_[+1]_48 chr9:18976702-18977202 7.6e-06 8_[+1]_70 chr8:11863798-11864298 8.4e-06 27_[+1]_51 chr5:98771363-98771863 8.4e-06 6_[+1]_72 chr11:46948444-46948944 1e-05 53_[+1]_25 chr5:139247869-139248369 1.1e-05 19_[-1]_59 chr13:46674967-46675467 1.1e-05 66_[+1]_12 chr6:82260135-82260635 1.3e-05 33_[-1]_45 chr7:133492163-133492663 1.3e-05 71_[-1]_7 chr5:83265177-83265677 1.4e-05 33_[-1]_45 chr13:44218409-44218909 1.4e-05 12_[-1]_66 chr10:23408434-23408934 1.5e-05 17_[-1]_61 chr7:83267082-83267582 1.5e-05 56_[-1]_22 chr4:20294406-20294906 1.5e-05 38_[-1]_40 chr19:34184733-34185233 1.7e-05 53_[-1]_25 chr12:71627464-71627964 1.7e-05 20_[+1]_58 chr5:38783020-38783520 1.9e-05 22_[+1]_56 chr9:1034224-1034724 1.9e-05 65_[+1]_13 chr16:25049578-25050078 2.2e-05 77_[-1]_1 chr11:116853580-11685408 2.2e-05 1_[-1]_77 chr19:33293253-33293753 2.2e-05 37_[+1]_41 chr5:42994693-42995193 2.2e-05 16_[+1]_62 chr15:81966569-81967069 2.2e-05 46_[+1]_32 chr16:53611141-53611641 2.5e-05 17_[-1]_61 chr7:135716553-135717053 2.5e-05 30_[+1]_48 chr20:46085116-46085616 2.5e-05 48_[+1]_30 chr7:157358401-157358901 2.7e-05 43_[-1]_35 chr15:57090408-57090908 2.7e-05 66_[-1]_12 chr17:81583883-81584383 3e-05 23_[-1]_55 chr8:17674922-17675422 3e-05 30_[+1]_48 chr11:17277202-17277702 3.2e-05 20_[-1]_58 chr7:158615954-158616454 3.5e-05 71_[-1]_7 chr14:32134480-32134980 3.8e-05 63_[-1]_15 chr12:104505510-10450601 3.8e-05 70_[-1]_8 chr6:47456561-47457061 3.8e-05 64_[-1]_14 chr1:184935851-184936351 3.8e-05 15_[+1]_63 chr5:72246889-72247389 4.2e-05 48_[+1]_30 chr5:96745703-96746203 4.2e-05 55_[-1]_23 chr9:123678551-123679051 4.2e-05 2_[-1]_76 chr3:130425510-130426010 5e-05 [-1]_78 chr13:37046971-37047471 5.9e-05 54_[+1]_24 chr10:10313401-10313901 6.4e-05 72_[-1]_6 chr6:12816147-12816647 6.4e-05 44_[-1]_34 chr14:96574793-96575293 6.9e-05 36_[-1]_42 chr6:29552430-29552930 7.5e-05 17_[+1]_61 chr22:24310921-24311421 8.1e-05 33_[-1]_45 chr6:124487969-124488469 9.4e-05 6_[+1]_72 chr1:125179947-125180447 0.0001 38_[-1]_40 chr15:65512833-65513333 0.0001 20_[+1]_58 chr10:35890243-35890743 0.00013 38_[+1]_40 chr10:118740022-11874052 0.00022 48_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAAYAMAHAMANMAATWAAHA width=22 seqs=98 chr19:40567075-40567575 ( 27) TAAATAAATAAATAAATAAATA 1 chr19:35881939-35882439 ( 37) TAAATAAATAAATAAATAAATA 1 chr5:32367213-32367713 ( 52) TAAATAAATAAATAAATAAATA 1 chr1:225654695-225655195 ( 35) TAAATAAATAAATAAATAAATA 1 chr19:31332880-31333380 ( 29) TAAATAAATAAATAAATAAATA 1 chr5:34182252-34182752 ( 26) TAAATAAATAAATAAATAAATA 1 chr6:133248613-133249113 ( 57) CAAACAAACAAAAAAAAAAACA 1 chr1:28648534-28649034 ( 77) TAAAAAAAAAAAAAAACACACA 1 chr18:24063681-24064181 ( 9) CAAACAAAAAGTCAAATTATAA 1 chr1:167658587-167659087 ( 8) CAAAAAAAAAATACCATAAAAA 1 chr1:184037557-184038057 ( 15) TACACACACACACACACACACA 1 chr10:101442053-10144255 ( 46) TACACACACACACACACACACA 1 chr5:160008691-160009191 ( 4) TAAATAAATAGTGAAACGAACA 1 chr1:3403743-3404243 ( 63) TAAACACATAAATCACAATTAA 1 chr16:12120440-12120940 ( 22) CAAACATAAACACAGACACACA 1 chr9:13956057-13956557 ( 49) TAAAAATAAAAACCATCTCACA 1 chr6:2028570-2029070 ( 28) TGAACACATAAATCATTTCATA 1 chr8:109611182-109611682 ( 61) TAAACACTAAGTCCACTTATCA 1 chr6:129183810-129184310 ( 68) TAAACAACAACAAAAAGTAATC 1 chr6:16757291-16757791 ( 66) TAAACTCACAAAACGGTAAAAA 1 chr20:18430092-18430592 ( 70) TAAATTCTAAGAACCATAAACA 1 chr1:214520527-214521027 ( 49) TAAATAAATACAAAACATTTCA 1 chr9:16953986-16954486 ( 46) TGAACTCTTAAATAAAGAAACA 1 chr1:244719602-244720102 ( 55) AAAACAAACAGCCCAATTAAAA 1 chr6:150418334-150418834 ( 29) TGAAAACAAAGAGAAGTAATCA 1 chr2:144430764-144431264 ( 66) CAGAAACACACACAAAAAAACA 1 chr6:4320842-4321342 ( 11) TAAACAGTAAGAAACATTATCA 1 chr6:137853605-137854105 ( 24) TAAAAAATTAAAGCATGACAAA 1 chr12:82817323-82817823 ( 37) TAAACACTGACACACACACACA 1 chr1:16164138-16164638 ( 23) TAAATGAATGAGCAAATAAACA 1 chr1:237166750-237167250 ( 44) CAAATAAACAAACAAAAGCAAC 1 chr11:120346987-12034748 ( 78) CACACACACACACACAGACAGA 1 chr11:62841252-62841752 ( 66) AAAACACCTAATCCAACTCAAA 1 chr16:22386875-22387375 ( 1) TAAACACCCAAATAAAGCAAAA 1 chr1:66542681-66543181 ( 11) TACAAATAAACAGCACTTAACT 1 chr15:101372153-10137265 ( 19) AAAACAATCAAAACAGTTATAA 1 chr3:61634615-61635115 ( 21) AAAACAAACACAGCATATCAGA 1 chr6:43321930-43322430 ( 39) TGAATAAAAACAAAACCACAAC 1 chr17:61335991-61336491 ( 5) CAAATAACAAATCCACTTTACA 1 chrX:23944238-23944738 ( 40) TGCATATAAACAGCTATAAAAA 1 chr3:17730384-17730884 ( 66) TAAAATCATGAGTAAATAAATA 1 chr17:70661784-70662284 ( 75) TAAATAAAATGTGCAAAAAAGA 1 chr22:40711453-40711953 ( 9) CAAACAAAACAGAACAAAAAAA 1 chr2:205280611-205281111 ( 17) TGAATTAAAAGAACATAAAATA 1 chr2:24540013-24540513 ( 9) CAAATAAAAAGTTACTAGAACA 1 chr5:115701960-115702460 ( 57) AGAAAATAAAGACAACTAATAA 1 chr1:8701170-8701670 ( 36) AAAACACACACACAAAGGAAGT 1 chr5:6419244-6419744 ( 31) TAAATAAAAAATTATGTACTAA 1 chr9:18976702-18977202 ( 9) CACAAAACCACAAACCAAAACA 1 chr8:11863798-11864298 ( 28) TAAACACACTGGGCACTTAACA 1 chr5:98771363-98771863 ( 7) AACACTTATGCAGCAATAAAAA 1 chr11:46948444-46948944 ( 54) TGCACAGACAGTAAACAAAAAA 1 chr5:139247869-139248369 ( 20) TAAATATAATCTAACAGAAATA 1 chr13:46674967-46675467 ( 67) TAAAAACAAACACACTGTTAGA 1 chr6:82260135-82260635 ( 34) TGAATATCAAATTCAAGTCACA 1 chr7:133492163-133492663 ( 72) TAAACACAACCAAAAGAGAACC 1 chr5:83265177-83265677 ( 34) TAAACATAGAGTGAAGCTAATA 1 chr13:44218409-44218909 ( 13) TAAATAAATACTGACACAATGC 1 chr10:23408434-23408934 ( 18) TTAACACACAATTAACGTCATA 1 chr7:83267082-83267582 ( 57) TTAACAAATAAAACATTGTAAA 1 chr4:20294406-20294906 ( 39) TAAATTAAAAGGCCATATATAA 1 chr19:34184733-34185233 ( 54) TACAAAGCAAAACACATTTACA 1 chr12:71627464-71627964 ( 21) AAAAAAACCTCAAACATAAAAA 1 chr5:38783020-38783520 ( 23) AACACAAACAGTTCTCTTAAAA 1 chr9:1034224-1034724 ( 66) CAAACAACCCATTAGATTAAAA 1 chr16:25049578-25050078 ( 78) TAAATACATAAACCGTTAACAC 1 chr11:116853580-11685408 ( 2) CAAATAAACACAGCAGCATAAC 1 chr19:33293253-33293753 ( 38) AAAACTCAGGAATCAAATAAAA 1 chr5:42994693-42995193 ( 17) CACATTAAAACGTCACAACACA 1 chr15:81966569-81967069 ( 47) TGAACATTTAATCCACTTAACT 1 chr16:53611141-53611641 ( 18) CTCAAATACAAAGCAATAAAGA 1 chr7:135716553-135717053 ( 31) TAAAATGAAGATAAAAATAATA 1 chr20:46085116-46085616 ( 49) TACACAGATAATTACAATACAA 1 chr7:157358401-157358901 ( 44) TGCATTACCACAGAAATAAAAC 1 chr15:57090408-57090908 ( 67) AAAAATCATCAATCACTGAACA 1 chr17:81583883-81584383 ( 24) TAAACAAAACCTGCACCAATAT 1 chr8:17674922-17675422 ( 31) TAAAATTTAACAACAACAACAA 1 chr11:17277202-17277702 ( 21) CAAACACCAACCACAATAACCA 1 chr7:158615954-158616454 ( 72) CAAATAAAAACACAGCCACAGT 1 chr14:32134480-32134980 ( 64) CAAACACATGAAGACATACTAT 1 chr12:104505510-10450601 ( 71) TGAACTGCTAAGCAAATAATAA 1 chr6:47456561-47457061 ( 65) TATAAATAAACACCAGTGAATA 1 chr1:184935851-184936351 ( 16) TACACTTATGCTAAACTAATTA 1 chr5:72246889-72247389 ( 49) TAAATGCATGAATCATGTAAGA 1 chr5:96745703-96746203 ( 56) TAAATAAAAGATCCTTTGAAGA 1 chr9:123678551-123679051 ( 3) AACATATTAACATAAGTGATAA 1 chr3:130425510-130426010 ( 1) AAGACAATTACACAGAAAAATA 1 chr13:37046971-37047471 ( 55) TAAACTCATAAATCACTTCTCG 1 chr10:10313401-10313901 ( 73) TACATAACTGCTTCTAATAACA 1 chr6:12816147-12816647 ( 45) TACACACCCACAGAGTTTAATT 1 chr14:96574793-96575293 ( 37) TAAATGGTGACACCAATGAATA 1 chr6:29552430-29552930 ( 18) TAAAAGCAAAGATAATATTTCA 1 chr22:24310921-24311421 ( 34) TACACATAACGGCACCAAATCA 1 chr6:124487969-124488469 ( 7) ATAATAATAAGACAAGGAATAA 1 chr1:125179947-125180447 ( 39) CAAACGGAAAAAAACGGAATTA 1 chr15:65512833-65513333 ( 21) CAAAAATAACGTGCATGTAATA 1 chr10:35890243-35890743 ( 39) TACAATCTTACACCAGCACACC 1 chr10:118740022-11874052 ( 49) TGAATATTTACATAGCTATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.5137 E= 1.7e-034 -91 -18 -1326 128 162 -1326 -80 -272 151 -18 -350 -472 189 -1326 -1326 -1326 -33 92 -1326 37 153 -1326 -218 -63 67 41 -150 -55 139 -69 -1326 -81 60 2 -250 23 155 -169 -118 -272 67 67 -18 -1326 126 -350 -150 -8 -20 41 -33 4 111 86 -1326 -1326 132 -25 -150 -240 92 -11 -92 -81 -26 -50 -69 80 103 -450 -104 28 137 -11 -1326 -155 147 -250 -1326 -33 37 54 -118 -33 160 -133 -450 -172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 98 E= 1.7e-034 0.142857 0.204082 0.000000 0.653061 0.826531 0.000000 0.132653 0.040816 0.765306 0.204082 0.020408 0.010204 1.000000 0.000000 0.000000 0.000000 0.214286 0.438776 0.000000 0.346939 0.775510 0.000000 0.051020 0.173469 0.428571 0.306122 0.081633 0.183673 0.704082 0.142857 0.000000 0.153061 0.408163 0.234694 0.040816 0.316327 0.785714 0.071429 0.102041 0.040816 0.428571 0.367347 0.204082 0.000000 0.642857 0.020408 0.081633 0.255102 0.234694 0.306122 0.183673 0.275510 0.581633 0.418367 0.000000 0.000000 0.673469 0.193878 0.081633 0.051020 0.510204 0.214286 0.122449 0.153061 0.224490 0.163265 0.142857 0.469388 0.551020 0.010204 0.112245 0.326531 0.693878 0.214286 0.000000 0.091837 0.744898 0.040816 0.000000 0.214286 0.346939 0.336735 0.102041 0.214286 0.816327 0.091837 0.010204 0.081633 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAYAMAHAMANMAATWAAHA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]A[AC]A[CTA]A[AC]A[ATC]A[ACG][AT][CTA][AC]A[AC][TA][AT][AC][AT][ACT]A -------------------------------------------------------------------------------- Time 551.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGASAGAGAGAGAGRGAGAGA MEME-2 width = 22 sites = 18 llr = 306 E-value = 2.0e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :618:8:62729:61529:7:7 pos.-specific C :2::31121:2:2:1::1:1:1 probability G a:717292727:83838:a282 matrix T :221:::::1:1:112::::2: bits 2.1 * * 1.9 * * * 1.7 * * * 1.5 * * ** ** Relative 1.3 * * * ** *** * Entropy 1.1 * *** ** * *** * (24.5 bits) 0.8 * ***** ***** * ****** 0.6 *************** ****** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GAGAGAGAGAGAGAGAGAGAGA consensus TT C GAG G GA TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:155244580-155245080 + 70 5.33e-14 gagagcgagc gagagagagagagagagagaga ggagCCGGC chr17:48728680-48729180 - 2 5.33e-14 CAGAGACAGA GAGAGAGAGAGAGAGAGAGAGA G chr10:101442053-10144255 - 14 1.98e-13 CATACACACA GAGACAGAGAGAGAGAGAGAGA GAGATTCTAA chr1:234723875-234724375 + 32 3.83e-13 agatgtgtgt gtgagagagagagagagagaga aatggaggga chr21:32771754-32772254 + 12 6.58e-13 gagagagaga gagagagcgagagagagagaga gagCCCCACA chr11:120346987-12034748 - 48 3.51e-11 GAGAGAGAGA GAGAGAGAGAAACAGAGAGAGA CAGAGAGAAA chr12:54359106-54359606 + 53 1.43e-09 CTGCCTGTAA GAGACAGCGAAAGAGAGAGAGC GTGCGAACGA chr6:82877158-82877658 - 65 1.37e-08 GCACCAAGCA GTGACAGAAAGAGGGAAAGCTA TCCCTGAGAT chr8:108042909-108043409 + 20 2.62e-08 GGCAGTTTGT GAGTGAGGAAGAGTGGAAGATA AGAGCAATTA chr5:136420550-136421050 - 32 5.14e-08 GAAGCTCTCA GCAGGAGGGACAGAGTGAGAGG ATGGAAATCA chrX:48003650-48004150 - 45 5.14e-08 ATCTGTTATC GAGAGAGAGTGAGGTTGAGGGG GCAAGTGCTA chr12:57935783-57936283 - 75 5.14e-08 AGCC GTTAGCGGGAGAGGCAGAGATA TTCAGAGGTC chr20:58650970-58651470 + 27 6.35e-08 GGGGGCACTC GCGAGGGACGGACAGGAAGAGG GCCAGGGGGG chr1:26233998-26234498 + 13 1.09e-07 TGCAACGGCC GTTAGAGGAGCTGAGGGAGGGA ACCACCGCTC chr8:28445295-28445795 - 3 1.59e-07 TCCAGCCCCT GATAGGCAAGGAGTGGAAGAGA AG chr21:39313554-39314054 + 73 3.36e-07 CCTGGGCGCC GCAGCAGCGAGTGGGGGAGGGG AGGGCG chr2:175167709-175168209 - 75 5.63e-07 TAGG GATACGGAGAAAGAAGGCGCTA ACATGGCGAC chr18:395639-396139 - 43 1.08e-06 TTTTCCAAAT GAGTCAGACGCACGCTGCGAGA TAAATGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:155244580-155245080 5.3e-14 69_[+2]_9 chr17:48728680-48729180 5.3e-14 1_[-2]_77 chr10:101442053-10144255 2e-13 13_[-2]_65 chr1:234723875-234724375 3.8e-13 31_[+2]_47 chr21:32771754-32772254 6.6e-13 11_[+2]_67 chr11:120346987-12034748 3.5e-11 47_[-2]_31 chr12:54359106-54359606 1.4e-09 52_[+2]_26 chr6:82877158-82877658 1.4e-08 64_[-2]_14 chr8:108042909-108043409 2.6e-08 19_[+2]_59 chr5:136420550-136421050 5.1e-08 31_[-2]_47 chrX:48003650-48004150 5.1e-08 44_[-2]_34 chr12:57935783-57936283 5.1e-08 74_[-2]_4 chr20:58650970-58651470 6.4e-08 26_[+2]_52 chr1:26233998-26234498 1.1e-07 12_[+2]_66 chr8:28445295-28445795 1.6e-07 2_[-2]_76 chr21:39313554-39314054 3.4e-07 72_[+2]_6 chr2:175167709-175168209 5.6e-07 74_[-2]_4 chr18:395639-396139 1.1e-06 42_[-2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGASAGAGAGAGAGRGAGAGA width=22 seqs=18 chr1:155244580-155245080 ( 70) GAGAGAGAGAGAGAGAGAGAGA 1 chr17:48728680-48729180 ( 2) GAGAGAGAGAGAGAGAGAGAGA 1 chr10:101442053-10144255 ( 14) GAGACAGAGAGAGAGAGAGAGA 1 chr1:234723875-234724375 ( 32) GTGAGAGAGAGAGAGAGAGAGA 1 chr21:32771754-32772254 ( 12) GAGAGAGCGAGAGAGAGAGAGA 1 chr11:120346987-12034748 ( 48) GAGAGAGAGAAACAGAGAGAGA 1 chr12:54359106-54359606 ( 53) GAGACAGCGAAAGAGAGAGAGC 1 chr6:82877158-82877658 ( 65) GTGACAGAAAGAGGGAAAGCTA 1 chr8:108042909-108043409 ( 20) GAGTGAGGAAGAGTGGAAGATA 1 chr5:136420550-136421050 ( 32) GCAGGAGGGACAGAGTGAGAGG 1 chrX:48003650-48004150 ( 45) GAGAGAGAGTGAGGTTGAGGGG 1 chr12:57935783-57936283 ( 75) GTTAGCGGGAGAGGCAGAGATA 1 chr20:58650970-58651470 ( 27) GCGAGGGACGGACAGGAAGAGG 1 chr1:26233998-26234498 ( 13) GTTAGAGGAGCTGAGGGAGGGA 1 chr8:28445295-28445795 ( 3) GATAGGCAAGGAGTGGAAGAGA 1 chr21:39313554-39314054 ( 73) GCAGCAGCGAGTGGGGGAGGGG 1 chr2:175167709-175168209 ( 75) GATACGGAGAAAGAAGGCGCTA 1 chr18:395639-396139 ( 43) GAGTCAGACGCACGCTGCGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.7669 E= 2.0e-015 -1081 -1081 211 -1081 118 -47 -1081 -27 -127 -1081 153 -27 153 -1081 -106 -127 -1081 53 153 -1081 153 -205 -47 -1081 -1081 -205 203 -1081 118 -47 -6 -1081 -27 -106 153 -1081 142 -1081 -6 -227 -69 -47 153 -1081 172 -1081 -1081 -127 -1081 -47 185 -1081 118 -1081 27 -127 -227 -106 175 -227 89 -1081 53 -69 -27 -1081 175 -1081 172 -106 -1081 -1081 -1081 -1081 211 -1081 142 -106 -47 -1081 -1081 -1081 175 -27 142 -205 -6 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 18 E= 2.0e-015 0.000000 0.000000 1.000000 0.000000 0.611111 0.166667 0.000000 0.222222 0.111111 0.000000 0.666667 0.222222 0.777778 0.000000 0.111111 0.111111 0.000000 0.333333 0.666667 0.000000 0.777778 0.055556 0.166667 0.000000 0.000000 0.055556 0.944444 0.000000 0.611111 0.166667 0.222222 0.000000 0.222222 0.111111 0.666667 0.000000 0.722222 0.000000 0.222222 0.055556 0.166667 0.166667 0.666667 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.166667 0.833333 0.000000 0.611111 0.000000 0.277778 0.111111 0.055556 0.111111 0.777778 0.055556 0.500000 0.000000 0.333333 0.166667 0.222222 0.000000 0.777778 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.722222 0.111111 0.166667 0.000000 0.000000 0.000000 0.777778 0.222222 0.722222 0.055556 0.222222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGASAGAGAGAGAGRGAGAGA MEME-2 regular expression -------------------------------------------------------------------------------- G[AT][GT]A[GC]AG[AG][GA][AG]GAG[AG]G[AG][GA]AGA[GT][AG] -------------------------------------------------------------------------------- Time 1067.84 secs. ******************************************************************************** ******************************************************************************** MOTIF VYMATAAA MEME-3 width = 8 sites = 161 llr = 1264 E-value = 7.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:3a:aaa pos.-specific C 355::::: probability G 4::::::: matrix T :52:a::: bits 2.1 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.3 bits) 0.8 * ***** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus CTA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr6:21264348-21264848 + 83 1.74e-05 AGCTTTATGA GCCATAAA AGTCAACATC chr18:22349945-22350445 - 78 1.74e-05 AGGGTTCCAG GCCATAAA ACCAACACCA chr18:24063681-24064181 + 76 1.74e-05 GGCAGATAGA GCCATAAA CCACCTTGCC chr8:109611182-109611682 + 51 1.74e-05 ATGTAACCCT GCCATAAA GATAAACACT chr22:25966318-25966818 - 5 1.74e-05 TGTCAGGAGA GCCATAAA ATGT chr8:37547845-37548345 + 67 1.74e-05 CTTCAAAGCT GCCATAAA AGTGCCATAA chr7:117123486-117123986 + 92 1.74e-05 CAAATAAGAT GCCATAAA G chr11:65095905-65096405 - 71 1.74e-05 ACTTCCGGGA GCCATAAA GTTGTTGTTG chr19:30004327-30004827 + 68 1.74e-05 TCAGCGCTTG GCCATAAA AATTCTGTAT chr17:48577453-48577953 + 20 1.74e-05 GGCCCACCAG GCCATAAA AATTTATGGG chr12:54054264-54054764 - 84 1.74e-05 AGTAGCTAA GCCATAAA ATTTATGGGG chr10:8534023-8534523 + 71 5.49e-05 GAAGATAAAG CCCATAAA CTATGAAGGG chr10:121865484-12186598 + 27 5.49e-05 AAGCTCTTTT CCCATAAA GCTTAATGAG chr2:139478061-139478561 + 51 5.49e-05 GTGTCTGGAA GTCATAAA GTTGGATAGT chr6:137665282-137665782 + 82 5.49e-05 aacattgttt cccataaa tattgttgct chr8:37479304-37479804 - 92 5.49e-05 A GTCATAAA TAATGCTTTG chr3:77191702-77192202 + 72 5.49e-05 ACACAGCATG GTCATAAA ATGAATACAG chr12:54052024-54052524 - 46 5.49e-05 GCTGTAAAAC GTCATAAA TCAGTCTCGC chr10:112793399-11279389 + 2 5.49e-05 A GTCATAAA AATGAAGTGT chr6:47722199-47722699 + 74 5.49e-05 AATTGTGGAA GTCATAAA AGCCAGTTAG chr7:26534935-26535435 + 74 5.49e-05 TTAACTCCAG CCCATAAA ATGGGCAATA chr10:77305633-77306133 + 48 5.49e-05 TATAAAGCAG CCCATaaa atgacatcat chr5:160081443-160081943 - 48 5.49e-05 AAGCTTAAGT GTCATAAA AAAGCTTATC chr5:14443590-14444090 - 50 5.49e-05 CATTGGAAAC GTCATAAA AGAAGATTTA chr1:232793881-232794381 + 64 5.49e-05 AGTCCTGCAT GTCATAAA ATCAATATGG chr20:35319232-35319732 - 52 5.49e-05 TTTTTATTAT GTCATAAA AAGTGCATGG chr10:15796072-15796572 + 44 5.49e-05 aacgagatag gtcataaa ctctccaggc chr10:75508645-75509145 - 29 5.49e-05 TCCACCAGTG CCCATAAA TTGCTGGGGG chr17:8681171-8681671 + 11 5.49e-05 AACAATTAAA GTCATAAA ATGTGTTTTC chr15:71747483-71747983 - 41 5.49e-05 TTGTTTCTGA GTCATAAA GTTTTGCTGA chr1:76294417-76294917 + 49 7.52e-05 AGAAAAGACA CTCATAAA TGTCAGAAAA chr6:43321930-43322430 + 8 7.52e-05 caaagaa ctcataaa agaaggtata chr10:61898228-61898728 - 49 7.52e-05 AAAGTAAATA CTCATAAA CAGATTGAAT chr12:50195792-50196292 - 75 7.52e-05 TGTTAATATC CTCATAAA AGACATTTTG chr5:175378374-175378874 + 68 7.52e-05 atgttttcag ctcataaa acctcttgga chr2:47715536-47716036 + 92 7.52e-05 tcattaaatg ctcataaa a chr17:39769920-39770420 + 76 7.52e-05 TAGTAACACA CTCATAAA AAAGGTTAGT chr10:22552789-22553289 + 73 7.52e-05 ATAATCCTAC CTCATAAA ACTCTGGACA chr6:125050653-125051153 - 45 7.52e-05 CTTTAACTGT CTCATAAA TCTATGCCAA chr15:70526476-70526976 - 59 7.52e-05 ATATGATGGG CTCATAAA ACCACTGGTT chr8:28445295-28445795 + 75 7.52e-05 TGTGATAAGC CTCATAAA GTTATTTTTC chr5:94469754-94470254 + 7 7.52e-05 TCACAC CTCATAAA AAGCTTTGTA chr3:42819855-42820355 + 52 7.52e-05 AAATTGAGGA CTCATAAA TGTAGTTGAC chr1:81032882-81033382 - 38 7.52e-05 CATGTGAGAT CTCATAAA GCTCACCATA chr7:51606671-51607171 - 30 7.52e-05 TGAGTCAATA CTCATAAA GGGTTTTATG chr15:66886239-66886739 - 57 7.52e-05 AAACATGAGC CTCATAAA TGAGTCTGGA chr6:166006002-166006502 + 65 7.52e-05 TATTATCAGA CTCATAAA TCAAACCGTT chr1:88145634-88146134 - 63 7.52e-05 TTTATTTTGA CTCATAAA GGAAACTTGA chr10:35890243-35890743 - 9 7.52e-05 CCCGGGAACC CTCATAAA AATGAGAG chr10:22599848-22600348 + 37 7.52e-05 TTTTCTCTCT CTCATAAA AGTGTCCTCA chr2:33589431-33589931 - 62 7.52e-05 GACGTTTTAA CTCATAAA TACAGTTTGC chr1:177340515-177341015 - 25 7.52e-05 TGTAACAAGC CTCATAAA GTTTGATCGT chr10:77287712-77288212 + 81 1.16e-04 GGATCAAGTG GCAATAAA CTCCGTTATC chr5:59303215-59303715 - 6 1.16e-04 AAAAGCAAAT GCAATAAA AACAA chr3:181328942-181329442 - 76 1.16e-04 AATCAAAGAG GCAATAAA GTGAAATTGA chr8:37302594-37303094 + 28 1.16e-04 ACTGGAACAT GCAATAAA TCATTAGAAT chr9:86141758-86142258 + 36 1.16e-04 gcccctaggg gcaataaa ttgtcaaaag chr12:41288190-41288690 - 76 1.16e-04 GCCACTCCAG GCAATAAA ACAACAGGAG chr8:124077220-124077720 + 74 1.16e-04 GGAAATGAGG GCAATAAA TGATCTTGCC chr18:23684579-23685079 + 91 1.16e-04 ACTAGGGAAT GCAATAAA AC chr15:77067255-77067755 - 84 1.16e-04 CAACTGTAG GCAATAAA AACTATGTTG chr13:21949776-21950276 + 24 1.16e-04 TTTGTGACAA GCAATAAA ATACAAGTGG chr9:127388310-127388810 - 77 1.16e-04 TTAACTGCGT GCAATAAA GATGAGTGAT chr5:5422180-5422680 + 84 1.16e-04 CAGCAAGGTG GCAATAAA GGATCGACC chr6:129183810-129184310 + 51 1.16e-04 ATAAAGTATA ACCATAAA TACCTACTGG chr10:121831685-12183218 + 60 1.16e-04 ATCTATAGTG ACCATAAA TTATTCTGAA chr22:40634544-40635044 - 18 1.16e-04 AAAGGGCAAA ACCATAAA GTTTGGGTCA chr5:96781054-96781554 + 7 1.16e-04 ATCACT GCAATAAA ATTACTTGTA chr5:98771363-98771863 + 81 1.16e-04 CAACAGAGGA GCAATAAA GCACCTTATA chr4:150973824-150974324 + 63 1.16e-04 TTAATCTCTC ACCATAAA GTGGAAAACT chr5:119328678-119329178 - 61 1.16e-04 AGTGCTGGCT GCAATAAA TATGCTGGCA chr2:88330150-88330650 - 56 1.16e-04 CAACTCAAAA GCAATAAA GAGATAGTTC chr2:19667540-19668040 - 29 1.16e-04 TAGGTTTCCC ACCATAAA ACGTTATGTT chrX:38061237-38061737 + 34 1.16e-04 TATTTAATAG ACCATAAA ATTGAAATTC chr12:54359106-54359606 + 34 1.16e-04 CCCTGGGCTG ACCATAAA TCTGCCTGTA chr6:131816086-131816586 + 71 1.16e-04 GCCTCCATCA ACCATAAA ATACCCCCCA chr5:14147168-14147668 + 40 1.16e-04 TGTTCTCGTG GCAATAAA TCATTCTTTC chr10:33388262-33388762 - 81 1.16e-04 TTGCAAGAAA GCAATAAA GTTGCCTTTT chr18:59053304-59053804 - 64 1.16e-04 TAGATACCCA ACCATAAA AATGGTAGAT chr5:119270089-119270589 - 86 1.16e-04 GACGGTG GCAATAAA CGTGTCTAAG chr16:78184454-78184954 - 55 1.16e-04 TGCATTACCG ACCATAAA AACTGTAACA chr1:52955586-52956086 - 80 1.83e-04 AAATCTGCAT CCAATAAA TCTAGTTTTG chr7:110600909-110601409 - 56 1.83e-04 AATAGGACTA ATCATAAA ATTCTTAACG chr4:147768116-147768616 - 10 1.83e-04 ATTTTACAAC GTAATAAA GTAATGTAA chr12:114914231-11491473 - 11 1.83e-04 GACTCACTGG ATCATAAA AGAGATCAAA chr4:119730131-119730631 + 81 1.83e-04 AAAGCACAAC ATCATAAA CTTGGGAAAA chr9:95721054-95721554 + 68 1.83e-04 ATTTAACTGT ATCATAAA ACATTTGGAG chr2:46481481-46481981 - 73 1.83e-04 ACATCATATC CCAATAAA ACTGAAAAGT chr1:93960697-93961197 + 56 1.83e-04 TTGATAGCTG ATCATAAA ACTCAGCTCT chr1:214520527-214521027 - 15 1.83e-04 AAGACTGATC CCAATAAA CTCAACAAGT chr8:37360445-37360945 + 21 1.83e-04 CAAATGAGAG CCAATAAA GGGTGAATTG chr5:126000490-126000990 - 79 1.83e-04 GATGTATTAC ATCATAAA GTACACCAAG chr1:220119012-220119512 - 81 1.83e-04 CAATAAATCC ATCATAAA ACCTTGTACT chr3:16482936-16483436 + 27 1.83e-04 TTACAGAGAG GTAATAAA TACCTCATTA chr7:98476702-98477202 + 22 1.83e-04 TACGAGATCT CCAATAAA GTTCTAAGCG chr10:74833305-74833805 - 53 1.83e-04 CAACATCATC ATCATAAA TTAGTAGAGA chr22:24026692-24027192 - 42 1.83e-04 TAGTGCAATC CCAATAAA CATCACAGCA chr14:76486210-76486710 - 61 1.83e-04 ATTAGCAGAG GTAATAAA GGGAGATGTA chr5:59317214-59317714 - 44 1.83e-04 AATAGGTCTT GTAATAAA AAGGCAGTTA chr7:132485134-132485634 - 36 1.83e-04 GAACCAAAAC ATCATAAA CTTCCACTTG chr1:221393943-221394443 + 26 1.83e-04 GAGAACCCGC ATCATAAA CTTTTATTAT chr15:65512833-65513333 + 8 1.83e-04 GAGAACG GTAATAAA ATTGTCAAAA chr5:136729855-136730355 - 27 1.83e-04 GAGCAGAATA ATCATAAA GTAAACAATT chr22:24727077-24727577 - 8 1.83e-04 GAAAACTTTT ATCATAAA GTCAACA chr4:72444089-72444589 + 45 1.83e-04 TCTTTCCAAG ATCATAAA AAACAGGTTG chr5:90830057-90830557 - 86 1.83e-04 AAATACT CCAATAAA AATACTCAAG chr15:67768516-67769016 - 59 1.83e-04 AGCTCAGGAT GTAATAAA ATTACACTGC chr6:45416695-45417195 - 40 1.83e-04 AGGACTTAGC ATCATAAA CCTTTCCTTG chr19:54115417-54115917 + 36 2.06e-04 GTGCCAGGTG CTAATAAA GTTGTTGTTT chr12:806395-806895 - 38 2.06e-04 TGGTCACAAA CTAATAAA AGCCACAACT chr1:67831936-67832436 + 56 2.06e-04 TCCACACGGT CTAATAAA TTCCCGTTTG chr6:82072019-82072519 - 83 2.06e-04 AGTTACTGTG CTAATAAA AATATAATGA chr12:6470413-6470913 - 89 2.06e-04 AGCA CTAATAAA GGCGGAGGCC chr5:34608783-34609283 - 85 2.06e-04 GTTGCTGT CTAATAAA ATGTGACTCA chr15:95556842-95557342 - 17 2.06e-04 AGATAAAAAC CTAATAAA CAGAGTCTAG chr6:82260135-82260635 - 86 2.30e-04 TGCAGCA ACAATAAA CTTCAAGTAA chr17:48407085-48407585 + 7 2.30e-04 aacaga acaataaa acaagtctat chr10:50463965-50464465 + 17 2.30e-04 gttttttacc acaataaa aacaaACAAg chr1:161872508-161873008 - 28 2.30e-04 TGATTACTCT ACAATAAA TGTAATCTCA chr13:46674967-46675467 + 91 2.30e-04 CTGTTAGAAC ACAATAAA AT chr10:10989648-10990148 + 6 2.30e-04 aaagg acaataaa cattgggaga chr7:85591881-85592381 - 11 2.30e-04 CTGTTGCTAT ACAATAAA AGCAAATTTA chr18:50629059-50629559 - 46 2.50e-04 GCTCAGTCTG GCTATAAA CCATGTAAAC chr13:37046971-37047471 + 16 2.50e-04 ACAGGTTACT GCTATAAA TCTGTAAATA chr1:87718319-87718819 + 76 2.50e-04 GCACAGTCAA GCTATAAA TCTGTCCAAA chr11:47540194-47540694 + 33 2.50e-04 TTGAAAGCCT GCTATAAA ATGACTTTGA chr10:121819042-12181954 + 48 2.50e-04 TTAAGAAATA GCTATAAA GATAACGCAT chr7:83267082-83267582 - 28 2.50e-04 AAGATCCAAA GCTATAAA TCACATAAAA chr9:87603237-87603737 + 39 2.50e-04 ATTTGACACG GCTATAAA GATAATCCTT chr14:56585403-56585903 - 58 2.50e-04 TTCTCAAGCA GCTATAAA GATTAGGCAC chr5:125485050-125485550 + 43 2.50e-04 GCCTAGCCTT GCTATAAA GTCACTCCGT chr10:72098726-72099226 - 60 2.50e-04 AGTTTGCAGA GCTATAAA TCTGTCAGTC chr9:16953986-16954486 - 23 2.50e-04 GCCCAGCAGG GCTATAAA CAACCACCAA chr14:21511163-21511663 + 35 2.50e-04 TTTCTTGGAA GCTATAAA GAGCCACGTT chr12:116718810-11671931 + 81 2.78e-04 GTGTGCTTGT ATAATAAA CACGTCTGGT chr17:71180945-71181445 + 58 2.78e-04 TTGACAGTGT ATAATAAA TCCAGGCCTA chr2:24540013-24540513 - 74 2.78e-04 TGTTAAGGAT ATAATAAA TTCCCTATCT chr6:143755240-143755740 + 28 2.78e-04 CCTTATCAAC ATAATAAA AAGTTCCTGA chr20:20215914-20216414 + 7 2.78e-04 TGACTG ATAATAAA TTTCCTTACT chr5:32367213-32367713 + 27 2.78e-04 catctcaaaa ataataaa taaataaata chr16:25049578-25050078 + 15 3.21e-04 tgcagcctgt cctataaa agtgtaacac chr10:50605400-50605900 - 57 3.21e-04 TGCCTTTACA GTTATAAA CACACCCACC chr15:96694016-96694516 - 12 3.21e-04 ATGGAAGACA CCTATAAA GATATTAATT chr18:11696354-11696854 - 78 3.21e-04 CAGTTTCCAG CCTATAAA ATTTTAGTAT chr7:82156103-82156603 - 45 3.21e-04 CCACAGCTGG GTTATAAA GGGCTTCCTG chr1:53733857-53734357 - 69 3.21e-04 GAACCCCGCC GTTATAAA AACAGCCATC chr1:110338871-110339371 - 17 3.45e-04 CTTTCATTGG CTTATAAA CCCGTCCTTT chr1:223518508-223519008 + 5 3.68e-04 tgaa actataaa aattctagaa chr2:156781585-156782085 + 36 3.68e-04 aagacctgaa actataaa aattctagaa chr10:15409299-15409799 + 32 3.68e-04 aagacctgaa actataaa aactctagaa chr8:12619018-12619518 + 29 3.68e-04 aacagccaca actataaa actactagaa chr2:55843177-55843677 + 71 3.68e-04 TTGACCAAGG ACTATAAA ACTGTCAAGA chr6:150418334-150418834 + 18 3.68e-04 CTACAGCCAA ACTATAAA AAATGATTAC chr10:16686009-16686509 + 47 3.96e-04 GTTTTGTTTG ATTATAAA AGCGCCACTT chr3:71102127-71102627 - 55 3.96e-04 TGAGCAAACT ATTATAAA CATAGCATGG chr18:42850157-42850657 + 64 4.16e-04 AGTTGGCCTG GACATAAA TCTGGTGGCA chr1:175470979-175471479 - 17 4.16e-04 GGCAGGGAAG GACATAAA TGAGTTCATT chr19:34218163-34218663 - 48 4.16e-04 AGCATATCCA GACATAAA TCTAGATAAG chr5:115842914-115843414 + 11 4.36e-04 CTAGCTGAAA CACATAAA ATTGGACTCC chr12:27003715-27004215 + 71 4.36e-04 CCAGGCACTG CACATAAA ATTGTGAACC chr7:120806657-120807157 + 54 4.36e-04 ATGCCCATAA CACATAAA AACAAATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:21264348-21264848 1.7e-05 82_[+3]_10 chr18:22349945-22350445 1.7e-05 77_[-3]_15 chr18:24063681-24064181 1.7e-05 75_[+3]_17 chr8:109611182-109611682 1.7e-05 50_[+3]_42 chr22:25966318-25966818 1.7e-05 4_[-3]_88 chr8:37547845-37548345 1.7e-05 66_[+3]_26 chr7:117123486-117123986 1.7e-05 91_[+3]_1 chr11:65095905-65096405 1.7e-05 70_[-3]_22 chr19:30004327-30004827 1.7e-05 67_[+3]_25 chr17:48577453-48577953 1.7e-05 19_[+3]_73 chr12:54054264-54054764 1.7e-05 83_[-3]_9 chr10:8534023-8534523 5.5e-05 70_[+3]_22 chr10:121865484-12186598 5.5e-05 26_[+3]_66 chr2:139478061-139478561 5.5e-05 50_[+3]_42 chr6:137665282-137665782 5.5e-05 81_[+3]_11 chr8:37479304-37479804 5.5e-05 91_[-3]_1 chr3:77191702-77192202 5.5e-05 71_[+3]_21 chr12:54052024-54052524 5.5e-05 45_[-3]_47 chr10:112793399-11279389 5.5e-05 1_[+3]_91 chr6:47722199-47722699 5.5e-05 73_[+3]_19 chr7:26534935-26535435 5.5e-05 73_[+3]_19 chr10:77305633-77306133 5.5e-05 47_[+3]_45 chr5:160081443-160081943 5.5e-05 47_[-3]_45 chr5:14443590-14444090 5.5e-05 49_[-3]_43 chr1:232793881-232794381 5.5e-05 63_[+3]_29 chr20:35319232-35319732 5.5e-05 51_[-3]_41 chr10:15796072-15796572 5.5e-05 43_[+3]_49 chr10:75508645-75509145 5.5e-05 28_[-3]_64 chr17:8681171-8681671 5.5e-05 10_[+3]_82 chr15:71747483-71747983 5.5e-05 40_[-3]_52 chr1:76294417-76294917 7.5e-05 48_[+3]_44 chr6:43321930-43322430 7.5e-05 7_[+3]_85 chr10:61898228-61898728 7.5e-05 48_[-3]_44 chr12:50195792-50196292 7.5e-05 74_[-3]_18 chr5:175378374-175378874 7.5e-05 67_[+3]_25 chr2:47715536-47716036 7.5e-05 91_[+3]_1 chr17:39769920-39770420 7.5e-05 75_[+3]_17 chr10:22552789-22553289 7.5e-05 72_[+3]_20 chr6:125050653-125051153 7.5e-05 44_[-3]_48 chr15:70526476-70526976 7.5e-05 58_[-3]_34 chr8:28445295-28445795 7.5e-05 74_[+3]_18 chr5:94469754-94470254 7.5e-05 6_[+3]_86 chr3:42819855-42820355 7.5e-05 51_[+3]_41 chr1:81032882-81033382 7.5e-05 37_[-3]_55 chr7:51606671-51607171 7.5e-05 29_[-3]_63 chr15:66886239-66886739 7.5e-05 56_[-3]_36 chr6:166006002-166006502 7.5e-05 64_[+3]_28 chr1:88145634-88146134 7.5e-05 62_[-3]_30 chr10:35890243-35890743 7.5e-05 8_[-3]_84 chr10:22599848-22600348 7.5e-05 36_[+3]_56 chr2:33589431-33589931 7.5e-05 61_[-3]_31 chr1:177340515-177341015 7.5e-05 24_[-3]_68 chr10:77287712-77288212 0.00012 80_[+3]_12 chr5:59303215-59303715 0.00012 5_[-3]_87 chr3:181328942-181329442 0.00012 75_[-3]_17 chr8:37302594-37303094 0.00012 27_[+3]_65 chr9:86141758-86142258 0.00012 35_[+3]_57 chr12:41288190-41288690 0.00012 75_[-3]_17 chr8:124077220-124077720 0.00012 73_[+3]_19 chr18:23684579-23685079 0.00012 90_[+3]_2 chr15:77067255-77067755 0.00012 83_[-3]_9 chr13:21949776-21950276 0.00012 23_[+3]_69 chr9:127388310-127388810 0.00012 76_[-3]_16 chr5:5422180-5422680 0.00012 83_[+3]_9 chr6:129183810-129184310 0.00012 50_[+3]_42 chr10:121831685-12183218 0.00012 59_[+3]_33 chr22:40634544-40635044 0.00012 17_[-3]_75 chr5:96781054-96781554 0.00012 6_[+3]_86 chr5:98771363-98771863 0.00012 80_[+3]_12 chr4:150973824-150974324 0.00012 62_[+3]_30 chr5:119328678-119329178 0.00012 60_[-3]_32 chr2:88330150-88330650 0.00012 55_[-3]_37 chr2:19667540-19668040 0.00012 28_[-3]_64 chrX:38061237-38061737 0.00012 33_[+3]_59 chr12:54359106-54359606 0.00012 33_[+3]_59 chr6:131816086-131816586 0.00012 70_[+3]_22 chr5:14147168-14147668 0.00012 39_[+3]_53 chr10:33388262-33388762 0.00012 80_[-3]_12 chr18:59053304-59053804 0.00012 63_[-3]_29 chr5:119270089-119270589 0.00012 85_[-3]_7 chr16:78184454-78184954 0.00012 54_[-3]_38 chr1:52955586-52956086 0.00018 79_[-3]_13 chr7:110600909-110601409 0.00018 55_[-3]_37 chr4:147768116-147768616 0.00018 9_[-3]_83 chr12:114914231-11491473 0.00018 10_[-3]_82 chr4:119730131-119730631 0.00018 80_[+3]_12 chr9:95721054-95721554 0.00018 67_[+3]_25 chr2:46481481-46481981 0.00018 72_[-3]_20 chr1:93960697-93961197 0.00018 55_[+3]_37 chr1:214520527-214521027 0.00018 14_[-3]_78 chr8:37360445-37360945 0.00018 20_[+3]_72 chr5:126000490-126000990 0.00018 78_[-3]_14 chr1:220119012-220119512 0.00018 80_[-3]_12 chr3:16482936-16483436 0.00018 26_[+3]_66 chr7:98476702-98477202 0.00018 21_[+3]_71 chr10:74833305-74833805 0.00018 52_[-3]_40 chr22:24026692-24027192 0.00018 41_[-3]_51 chr14:76486210-76486710 0.00018 60_[-3]_32 chr5:59317214-59317714 0.00018 43_[-3]_49 chr7:132485134-132485634 0.00018 35_[-3]_57 chr1:221393943-221394443 0.00018 25_[+3]_67 chr15:65512833-65513333 0.00018 7_[+3]_85 chr5:136729855-136730355 0.00018 26_[-3]_66 chr22:24727077-24727577 0.00018 7_[-3]_85 chr4:72444089-72444589 0.00018 44_[+3]_48 chr5:90830057-90830557 0.00018 85_[-3]_7 chr15:67768516-67769016 0.00018 58_[-3]_34 chr6:45416695-45417195 0.00018 39_[-3]_53 chr19:54115417-54115917 0.00021 35_[+3]_57 chr12:806395-806895 0.00021 37_[-3]_55 chr1:67831936-67832436 0.00021 55_[+3]_37 chr6:82072019-82072519 0.00021 82_[-3]_10 chr12:6470413-6470913 0.00021 88_[-3]_4 chr5:34608783-34609283 0.00021 84_[-3]_8 chr15:95556842-95557342 0.00021 16_[-3]_76 chr6:82260135-82260635 0.00023 85_[-3]_7 chr17:48407085-48407585 0.00023 6_[+3]_86 chr10:50463965-50464465 0.00023 16_[+3]_76 chr1:161872508-161873008 0.00023 27_[-3]_65 chr13:46674967-46675467 0.00023 90_[+3]_2 chr10:10989648-10990148 0.00023 5_[+3]_87 chr7:85591881-85592381 0.00023 10_[-3]_82 chr18:50629059-50629559 0.00025 45_[-3]_47 chr13:37046971-37047471 0.00025 15_[+3]_77 chr1:87718319-87718819 0.00025 75_[+3]_17 chr11:47540194-47540694 0.00025 32_[+3]_60 chr10:121819042-12181954 0.00025 47_[+3]_45 chr7:83267082-83267582 0.00025 27_[-3]_65 chr9:87603237-87603737 0.00025 38_[+3]_54 chr14:56585403-56585903 0.00025 57_[-3]_35 chr5:125485050-125485550 0.00025 42_[+3]_50 chr10:72098726-72099226 0.00025 59_[-3]_33 chr9:16953986-16954486 0.00025 22_[-3]_70 chr14:21511163-21511663 0.00025 34_[+3]_58 chr12:116718810-11671931 0.00028 80_[+3]_12 chr17:71180945-71181445 0.00028 57_[+3]_35 chr2:24540013-24540513 0.00028 73_[-3]_19 chr6:143755240-143755740 0.00028 27_[+3]_65 chr20:20215914-20216414 0.00028 6_[+3]_86 chr5:32367213-32367713 0.00028 26_[+3]_66 chr16:25049578-25050078 0.00032 14_[+3]_78 chr10:50605400-50605900 0.00032 56_[-3]_36 chr15:96694016-96694516 0.00032 11_[-3]_81 chr18:11696354-11696854 0.00032 77_[-3]_15 chr7:82156103-82156603 0.00032 44_[-3]_48 chr1:53733857-53734357 0.00032 68_[-3]_24 chr1:110338871-110339371 0.00034 16_[-3]_76 chr1:223518508-223519008 0.00037 4_[+3]_88 chr2:156781585-156782085 0.00037 35_[+3]_57 chr10:15409299-15409799 0.00037 31_[+3]_61 chr8:12619018-12619518 0.00037 28_[+3]_64 chr2:55843177-55843677 0.00037 70_[+3]_22 chr6:150418334-150418834 0.00037 17_[+3]_75 chr10:16686009-16686509 0.0004 46_[+3]_46 chr3:71102127-71102627 0.0004 54_[-3]_38 chr18:42850157-42850657 0.00042 63_[+3]_29 chr1:175470979-175471479 0.00042 16_[-3]_76 chr19:34218163-34218663 0.00042 47_[-3]_45 chr5:115842914-115843414 0.00044 10_[+3]_82 chr12:27003715-27004215 0.00044 70_[+3]_22 chr7:120806657-120807157 0.00044 53_[+3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VYMATAAA width=8 seqs=161 chr6:21264348-21264848 ( 83) GCCATAAA 1 chr18:22349945-22350445 ( 78) GCCATAAA 1 chr18:24063681-24064181 ( 76) GCCATAAA 1 chr8:109611182-109611682 ( 51) GCCATAAA 1 chr22:25966318-25966818 ( 5) GCCATAAA 1 chr8:37547845-37548345 ( 67) GCCATAAA 1 chr7:117123486-117123986 ( 92) GCCATAAA 1 chr11:65095905-65096405 ( 71) GCCATAAA 1 chr19:30004327-30004827 ( 68) GCCATAAA 1 chr17:48577453-48577953 ( 20) GCCATAAA 1 chr12:54054264-54054764 ( 84) GCCATAAA 1 chr10:8534023-8534523 ( 71) CCCATAAA 1 chr10:121865484-12186598 ( 27) CCCATAAA 1 chr2:139478061-139478561 ( 51) GTCATAAA 1 chr6:137665282-137665782 ( 82) CCCATAAA 1 chr8:37479304-37479804 ( 92) GTCATAAA 1 chr3:77191702-77192202 ( 72) GTCATAAA 1 chr12:54052024-54052524 ( 46) GTCATAAA 1 chr10:112793399-11279389 ( 2) GTCATAAA 1 chr6:47722199-47722699 ( 74) GTCATAAA 1 chr7:26534935-26535435 ( 74) CCCATAAA 1 chr10:77305633-77306133 ( 48) CCCATAAA 1 chr5:160081443-160081943 ( 48) GTCATAAA 1 chr5:14443590-14444090 ( 50) GTCATAAA 1 chr1:232793881-232794381 ( 64) GTCATAAA 1 chr20:35319232-35319732 ( 52) GTCATAAA 1 chr10:15796072-15796572 ( 44) GTCATAAA 1 chr10:75508645-75509145 ( 29) CCCATAAA 1 chr17:8681171-8681671 ( 11) GTCATAAA 1 chr15:71747483-71747983 ( 41) GTCATAAA 1 chr1:76294417-76294917 ( 49) CTCATAAA 1 chr6:43321930-43322430 ( 8) CTCATAAA 1 chr10:61898228-61898728 ( 49) CTCATAAA 1 chr12:50195792-50196292 ( 75) CTCATAAA 1 chr5:175378374-175378874 ( 68) CTCATAAA 1 chr2:47715536-47716036 ( 92) CTCATAAA 1 chr17:39769920-39770420 ( 76) CTCATAAA 1 chr10:22552789-22553289 ( 73) CTCATAAA 1 chr6:125050653-125051153 ( 45) CTCATAAA 1 chr15:70526476-70526976 ( 59) CTCATAAA 1 chr8:28445295-28445795 ( 75) CTCATAAA 1 chr5:94469754-94470254 ( 7) CTCATAAA 1 chr3:42819855-42820355 ( 52) CTCATAAA 1 chr1:81032882-81033382 ( 38) CTCATAAA 1 chr7:51606671-51607171 ( 30) CTCATAAA 1 chr15:66886239-66886739 ( 57) CTCATAAA 1 chr6:166006002-166006502 ( 65) CTCATAAA 1 chr1:88145634-88146134 ( 63) CTCATAAA 1 chr10:35890243-35890743 ( 9) CTCATAAA 1 chr10:22599848-22600348 ( 37) CTCATAAA 1 chr2:33589431-33589931 ( 62) CTCATAAA 1 chr1:177340515-177341015 ( 25) CTCATAAA 1 chr10:77287712-77288212 ( 81) GCAATAAA 1 chr5:59303215-59303715 ( 6) GCAATAAA 1 chr3:181328942-181329442 ( 76) GCAATAAA 1 chr8:37302594-37303094 ( 28) GCAATAAA 1 chr9:86141758-86142258 ( 36) GCAATAAA 1 chr12:41288190-41288690 ( 76) GCAATAAA 1 chr8:124077220-124077720 ( 74) GCAATAAA 1 chr18:23684579-23685079 ( 91) GCAATAAA 1 chr15:77067255-77067755 ( 84) GCAATAAA 1 chr13:21949776-21950276 ( 24) GCAATAAA 1 chr9:127388310-127388810 ( 77) GCAATAAA 1 chr5:5422180-5422680 ( 84) GCAATAAA 1 chr6:129183810-129184310 ( 51) ACCATAAA 1 chr10:121831685-12183218 ( 60) ACCATAAA 1 chr22:40634544-40635044 ( 18) ACCATAAA 1 chr5:96781054-96781554 ( 7) GCAATAAA 1 chr5:98771363-98771863 ( 81) GCAATAAA 1 chr4:150973824-150974324 ( 63) ACCATAAA 1 chr5:119328678-119329178 ( 61) GCAATAAA 1 chr2:88330150-88330650 ( 56) GCAATAAA 1 chr2:19667540-19668040 ( 29) ACCATAAA 1 chrX:38061237-38061737 ( 34) ACCATAAA 1 chr12:54359106-54359606 ( 34) ACCATAAA 1 chr6:131816086-131816586 ( 71) ACCATAAA 1 chr5:14147168-14147668 ( 40) GCAATAAA 1 chr10:33388262-33388762 ( 81) GCAATAAA 1 chr18:59053304-59053804 ( 64) ACCATAAA 1 chr5:119270089-119270589 ( 86) GCAATAAA 1 chr16:78184454-78184954 ( 55) ACCATAAA 1 chr1:52955586-52956086 ( 80) CCAATAAA 1 chr7:110600909-110601409 ( 56) ATCATAAA 1 chr4:147768116-147768616 ( 10) GTAATAAA 1 chr12:114914231-11491473 ( 11) ATCATAAA 1 chr4:119730131-119730631 ( 81) ATCATAAA 1 chr9:95721054-95721554 ( 68) ATCATAAA 1 chr2:46481481-46481981 ( 73) CCAATAAA 1 chr1:93960697-93961197 ( 56) ATCATAAA 1 chr1:214520527-214521027 ( 15) CCAATAAA 1 chr8:37360445-37360945 ( 21) CCAATAAA 1 chr5:126000490-126000990 ( 79) ATCATAAA 1 chr1:220119012-220119512 ( 81) ATCATAAA 1 chr3:16482936-16483436 ( 27) GTAATAAA 1 chr7:98476702-98477202 ( 22) CCAATAAA 1 chr10:74833305-74833805 ( 53) ATCATAAA 1 chr22:24026692-24027192 ( 42) CCAATAAA 1 chr14:76486210-76486710 ( 61) GTAATAAA 1 chr5:59317214-59317714 ( 44) GTAATAAA 1 chr7:132485134-132485634 ( 36) ATCATAAA 1 chr1:221393943-221394443 ( 26) ATCATAAA 1 chr15:65512833-65513333 ( 8) GTAATAAA 1 chr5:136729855-136730355 ( 27) ATCATAAA 1 chr22:24727077-24727577 ( 8) ATCATAAA 1 chr4:72444089-72444589 ( 45) ATCATAAA 1 chr5:90830057-90830557 ( 86) CCAATAAA 1 chr15:67768516-67769016 ( 59) GTAATAAA 1 chr6:45416695-45417195 ( 40) ATCATAAA 1 chr19:54115417-54115917 ( 36) CTAATAAA 1 chr12:806395-806895 ( 38) CTAATAAA 1 chr1:67831936-67832436 ( 56) CTAATAAA 1 chr6:82072019-82072519 ( 83) CTAATAAA 1 chr12:6470413-6470913 ( 89) CTAATAAA 1 chr5:34608783-34609283 ( 85) CTAATAAA 1 chr15:95556842-95557342 ( 17) CTAATAAA 1 chr6:82260135-82260635 ( 86) ACAATAAA 1 chr17:48407085-48407585 ( 7) ACAATAAA 1 chr10:50463965-50464465 ( 17) ACAATAAA 1 chr1:161872508-161873008 ( 28) ACAATAAA 1 chr13:46674967-46675467 ( 91) ACAATAAA 1 chr10:10989648-10990148 ( 6) ACAATAAA 1 chr7:85591881-85592381 ( 11) ACAATAAA 1 chr18:50629059-50629559 ( 46) GCTATAAA 1 chr13:37046971-37047471 ( 16) GCTATAAA 1 chr1:87718319-87718819 ( 76) GCTATAAA 1 chr11:47540194-47540694 ( 33) GCTATAAA 1 chr10:121819042-12181954 ( 48) GCTATAAA 1 chr7:83267082-83267582 ( 28) GCTATAAA 1 chr9:87603237-87603737 ( 39) GCTATAAA 1 chr14:56585403-56585903 ( 58) GCTATAAA 1 chr5:125485050-125485550 ( 43) GCTATAAA 1 chr10:72098726-72099226 ( 60) GCTATAAA 1 chr9:16953986-16954486 ( 23) GCTATAAA 1 chr14:21511163-21511663 ( 35) GCTATAAA 1 chr12:116718810-11671931 ( 81) ATAATAAA 1 chr17:71180945-71181445 ( 58) ATAATAAA 1 chr2:24540013-24540513 ( 74) ATAATAAA 1 chr6:143755240-143755740 ( 28) ATAATAAA 1 chr20:20215914-20216414 ( 7) ATAATAAA 1 chr5:32367213-32367713 ( 27) ATAATAAA 1 chr16:25049578-25050078 ( 15) CCTATAAA 1 chr10:50605400-50605900 ( 57) GTTATAAA 1 chr15:96694016-96694516 ( 12) CCTATAAA 1 chr18:11696354-11696854 ( 78) CCTATAAA 1 chr7:82156103-82156603 ( 45) GTTATAAA 1 chr1:53733857-53734357 ( 69) GTTATAAA 1 chr1:110338871-110339371 ( 17) CTTATAAA 1 chr1:223518508-223519008 ( 5) ACTATAAA 1 chr2:156781585-156782085 ( 36) ACTATAAA 1 chr10:15409299-15409799 ( 32) ACTATAAA 1 chr8:12619018-12619518 ( 29) ACTATAAA 1 chr2:55843177-55843677 ( 71) ACTATAAA 1 chr6:150418334-150418834 ( 18) ACTATAAA 1 chr10:16686009-16686509 ( 47) ATTATAAA 1 chr3:71102127-71102627 ( 55) ATTATAAA 1 chr18:42850157-42850657 ( 64) GACATAAA 1 chr1:175470979-175471479 ( 17) GACATAAA 1 chr19:34218163-34218663 ( 48) GACATAAA 1 chr5:115842914-115843414 ( 11) CACATAAA 1 chr12:27003715-27004215 ( 71) CACATAAA 1 chr7:120806657-120807157 ( 54) CACATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 9.91348 E= 7.6e-011 6 40 85 -1397 -285 112 -1397 77 26 114 -1397 -68 189 -1397 -1397 -1397 -1397 -1397 -1397 189 189 -1397 -1397 -1397 189 -1397 -1397 -1397 189 -1397 -1397 -1397 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 161 E= 7.6e-011 0.279503 0.304348 0.416149 0.000000 0.037267 0.503106 0.000000 0.459627 0.322981 0.509317 0.000000 0.167702 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VYMATAAA MEME-3 regular expression -------------------------------------------------------------------------------- [GCA][CT][CA]ATAAA -------------------------------------------------------------------------------- Time 1531.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 width = 29 sites = 4 llr = 147 E-value = 6.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3:aa:::aa:::::8:aa:3::::::: pos.-specific C :a8::::8a::3::a::::::::::::3a probability G a:::::a:::::a:::3a::a8a:::::: matrix T :::a:::3:::8:a:a:::::::aaaa8: bits 2.1 ** * * * * * * * * 1.9 ** **** *** **** **** ***** * 1.7 ** **** *** **** **** ***** * 1.5 ** **** *** **** **** ***** * Relative 1.3 *********** **** ********** * Entropy 1.1 ***************************** (52.9 bits) 0.8 ***************************** 0.6 ***************************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GCCTAAGCCAATGTCTAGAAGGGTTTTTC consensus A T C G A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr5:59303215-59303715 + 47 4.01e-18 tgaaatcctt gcctaagccaatgtctagaagggtttttc caaagttatc chr10:15409299-15409799 - 60 2.83e-17 CGAAATCCTT GCATAAGCCAATGTCTAGAAGGGTTTTTC CAATGTTATC chr2:156781585-156782085 - 64 7.33e-17 AAATTCTT GCCTAAGCCAACGTCTAGAAGAGTTTTTC TGATGTTATC chr1:223518508-223519008 - 32 1.23e-16 TGAAATCCTT GCCTAAGTCAATGTCTGGAAGGGTTTTCC AATGTTATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:59303215-59303715 4e-18 46_[+4]_25 chr10:15409299-15409799 2.8e-17 59_[-4]_12 chr2:156781585-156782085 7.3e-17 63_[-4]_8 chr1:223518508-223519008 1.2e-16 31_[-4]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTAAGCCAATGTCTAGAAGGGTTTTTC width=29 seqs=4 chr5:59303215-59303715 ( 47) GCCTAAGCCAATGTCTAGAAGGGTTTTTC 1 chr10:15409299-15409799 ( 60) GCATAAGCCAATGTCTAGAAGGGTTTTTC 1 chr2:156781585-156782085 ( 64) GCCTAAGCCAACGTCTAGAAGAGTTTTTC 1 chr1:223518508-223519008 ( 32) GCCTAAGTCAATGTCTGGAAGGGTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 13.3986 E= 6.8e-005 -865 -865 211 -865 -865 211 -865 -865 -10 170 -865 -865 -865 -865 -865 189 189 -865 -865 -865 189 -865 -865 -865 -865 -865 211 -865 -865 170 -865 -10 -865 211 -865 -865 189 -865 -865 -865 189 -865 -865 -865 -865 11 -865 148 -865 -865 211 -865 -865 -865 -865 189 -865 211 -865 -865 -865 -865 -865 189 148 -865 11 -865 -865 -865 211 -865 189 -865 -865 -865 189 -865 -865 -865 -865 -865 211 -865 -10 -865 170 -865 -865 -865 211 -865 -865 -865 -865 189 -865 -865 -865 189 -865 -865 -865 189 -865 -865 -865 189 -865 11 -865 148 -865 211 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 4 E= 6.8e-005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAAGCCAATGTCTAGAAGGGTTTTTC MEME-4 regular expression -------------------------------------------------------------------------------- GC[CA]TAAG[CT]CAA[TC]GTCT[AG]GAAG[GA]GTTTT[TC]C -------------------------------------------------------------------------------- Time 1970.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GVSGCCRSGGGSSGGS MEME-5 width = 16 sites = 43 llr = 468 E-value = 8.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :22:1:4:::21::2: pos.-specific C 144:66:412256:25 probability G 644a125698644a75 matrix T 2:::122::::::::: bits 2.1 * 1.9 * * 1.7 * * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 * *** ** * (15.7 bits) 0.8 * *** ***** 0.6 * ** ********* 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel GCCGCCGGGGGCCGGG consensus TGG TAC AGG C sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:55407879-55408379 + 18 5.56e-08 TGAATGAGAC GCCGCCACGGCCCGGC ATACGCGCGG chr10:31319255-31319755 - 14 6.67e-08 GGGAGAGCGA GCGGCCGCGGCGCGGC TCCGGCAGCG chr19:5903610-5904110 + 74 1.87e-07 ATCGCGCGCA CGCGCCGGGGACCGGC CTGGAGGAAG chr19:4471865-4472365 - 80 2.21e-07 CTCCG GCCGTCACGGGCCGGC AAAGCCGTCG chr15:74099994-74100494 + 23 5.54e-07 ATCGCGCGAG GAAGCCAGGGCCCGGG AATTTCTTTT chr15:75335784-75336284 - 82 5.54e-07 CAA GAAGCCAGGGCCCGGG AATTTCTTTT chr12:106773816-10677431 - 80 5.54e-07 CGCCT GAGGCCAGCGGCGGGG AGACCGTTAG chr2:55419639-55420139 - 57 6.39e-07 ATTGGCGGGC GGCGCTGGCGGGCGGC GAGGGGTGGG chr17:45148395-45148895 + 56 1.23e-06 GTCCTCTGCT GAGGCTACGGCCGGGC CTAGGGAACT chr19:49766580-49767080 - 9 1.23e-06 TTTCCGTTTG GGAGCTGGGGAGGGGG GGGAGGAG chr16:29805344-29805844 - 81 1.38e-06 CGCC GGGGGCACGGACGGGG CGGGGCTAAT chr19:17606257-17606757 - 32 1.38e-06 GGTCAAGTAA CGGGGCAGGGGCGGGG CTAGCGTAGC chr6:31958737-31959237 - 65 1.76e-06 GGCGGAAGTG CGCGCCTGGGGCCGCC TTGGTTACCG chr15:75625632-75626132 + 56 1.98e-06 GCATTTCCCA TCGGCTAGGGAGGGGG TCTTCTTGCA chr19:10602507-10603007 - 25 1.98e-06 CTCCCGGGGA GGGGACGCGGGGCGAC CCGGTTAGAG chr22:42614698-42615198 + 15 1.98e-06 CGCCCCTTCG GCCGCTAGGGAGCGAC GAACTACTTC chr19:37655849-37656349 - 54 2.22e-06 TCGGTCCAGG TACGCGGGGGCGCGGC GGCCGTCACT chr16:30650431-30650931 + 34 2.79e-06 CACCACCCCG GAAGACGGGGACCGGC GATTGGGCGG chr13:113296788-11329728 - 28 2.79e-06 GCCTGGTCCG GGGGACTGGGGCCGAG CCGAGGTCCT chr9:34665761-34666261 - 58 3.11e-06 TTTCCGGGGT GGAGCCAGGGAGGGCG GGAGTTTAGG chr3:31532209-31532709 - 68 3.47e-06 AAGCGACAGG TCCGTTAGGGGGCGGG CCCAGAACCG chr19:38831504-38832004 - 57 3.86e-06 CGAAGGCGGC GGCGATGGCGGCGGGG ATAGTGGCTT chr19:36054775-36055275 + 71 4.28e-06 TGGCGGGAGT TCCGGCGCGGAGGGGC CAGTCCTCCC chr19:39532468-39532968 - 17 4.72e-06 ACTGCGGGGG GCAGTCGGCGGCGGGG TTCGGGTGCA chr2:159712298-159712798 + 24 4.72e-06 GCGCCGGATC CGGGAGAGGGGCGGGC GCCATTGTGC chr3:169966478-169966978 + 63 5.21e-06 GATTACATAA CGGGCCTCGGGGCGCG TTCTCGCGAG chr6:87155291-87155791 + 77 5.73e-06 CCCAGGTGCG TACGCGACGGAGCGGG GTGTGAAG chr19:16197636-16198136 - 52 6.30e-06 TCCGGTTCGG GGAGCCGCGCGGGGAC CGTTATGTCC chr7:100874695-100875195 - 34 6.30e-06 TGGGCCAAGC GCGGCCTCGGGAGGCG AACAAGCCCT chrX:73944039-73944539 + 30 6.30e-06 GTAGTGCACG ACGGCTGGGCGCCGGG CCTGTTTGGC chr15:65610856-65611356 - 41 6.91e-06 GACTGTGTCC GGCGATGGGCACGGGG TGAGTGGGGA chr12:42325932-42326432 + 48 6.91e-06 TGGGATAACG GCGGCGAGCGGACGGC TGCATTTACG chr16:23149328-23149828 + 50 7.57e-06 GCGATGCCTG GAGGCTGCGGGCGCGG TCCTGCTGCG chr12:6470413-6470913 + 17 9.86e-06 ACTGCCAAGC TCCGCCTCGCGCCGAC TACCCCGCGG chr3:142578556-142579056 - 25 9.86e-06 TCCACACGGC TCCGTCGGGCGCCGCG CTCTTCCGGC chr12:76764168-76764668 + 28 9.86e-06 CGGACTCGCC GAGGGCGGCGGCCGAC GTGTGTGGGG chr1:40979693-40980193 - 19 1.07e-05 GACGTCCGTC ACCGCGGCGGCGGGGC TATTCGGCGC chr20:45791582-45792082 + 73 1.07e-05 GTAACTGTCC TGGGCGAGGCGCGGCG GTTCGGTTCC chr15:42920698-42921198 - 75 1.27e-05 CGGCAATTCT CCGGTGGGGGGCGGAG ACGGTTTCTG chr13:20567064-20567564 - 37 1.49e-05 CACACAGGAC GCCGCAGGGGCACGGC TGCCAGGGGC chr10:102152062-10215256 - 45 2.31e-05 GTTACGTCAT TGCGCCGCGCGGGCGC ATAACGGAAA chr10:117375481-11737598 + 19 2.31e-05 GATCTGGGAG GACGGCTGGGGACGCG GGCTGGAGGA chr6:151451971-151452471 + 57 2.64e-05 GACCACGTGA GCCGCGTCGCCGCGAC CTCTTCCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:55407879-55408379 5.6e-08 17_[+5]_67 chr10:31319255-31319755 6.7e-08 13_[-5]_71 chr19:5903610-5904110 1.9e-07 73_[+5]_11 chr19:4471865-4472365 2.2e-07 79_[-5]_5 chr15:74099994-74100494 5.5e-07 22_[+5]_62 chr15:75335784-75336284 5.5e-07 81_[-5]_3 chr12:106773816-10677431 5.5e-07 79_[-5]_5 chr2:55419639-55420139 6.4e-07 56_[-5]_28 chr17:45148395-45148895 1.2e-06 55_[+5]_29 chr19:49766580-49767080 1.2e-06 8_[-5]_76 chr16:29805344-29805844 1.4e-06 80_[-5]_4 chr19:17606257-17606757 1.4e-06 31_[-5]_53 chr6:31958737-31959237 1.8e-06 64_[-5]_20 chr15:75625632-75626132 2e-06 55_[+5]_29 chr19:10602507-10603007 2e-06 24_[-5]_60 chr22:42614698-42615198 2e-06 14_[+5]_70 chr19:37655849-37656349 2.2e-06 53_[-5]_31 chr16:30650431-30650931 2.8e-06 33_[+5]_51 chr13:113296788-11329728 2.8e-06 27_[-5]_57 chr9:34665761-34666261 3.1e-06 57_[-5]_27 chr3:31532209-31532709 3.5e-06 67_[-5]_17 chr19:38831504-38832004 3.9e-06 56_[-5]_28 chr19:36054775-36055275 4.3e-06 70_[+5]_14 chr19:39532468-39532968 4.7e-06 16_[-5]_68 chr2:159712298-159712798 4.7e-06 23_[+5]_61 chr3:169966478-169966978 5.2e-06 62_[+5]_22 chr6:87155291-87155791 5.7e-06 76_[+5]_8 chr19:16197636-16198136 6.3e-06 51_[-5]_33 chr7:100874695-100875195 6.3e-06 33_[-5]_51 chrX:73944039-73944539 6.3e-06 29_[+5]_55 chr15:65610856-65611356 6.9e-06 40_[-5]_44 chr12:42325932-42326432 6.9e-06 47_[+5]_37 chr16:23149328-23149828 7.6e-06 49_[+5]_35 chr12:6470413-6470913 9.9e-06 16_[+5]_68 chr3:142578556-142579056 9.9e-06 24_[-5]_60 chr12:76764168-76764668 9.9e-06 27_[+5]_57 chr1:40979693-40980193 1.1e-05 18_[-5]_66 chr20:45791582-45792082 1.1e-05 72_[+5]_12 chr15:42920698-42921198 1.3e-05 74_[-5]_10 chr13:20567064-20567564 1.5e-05 36_[-5]_48 chr10:102152062-10215256 2.3e-05 44_[-5]_40 chr10:117375481-11737598 2.3e-05 18_[+5]_66 chr6:151451971-151452471 2.6e-05 56_[+5]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVSGCCRSGGGSSGGS width=16 seqs=43 chr19:55407879-55408379 ( 18) GCCGCCACGGCCCGGC 1 chr10:31319255-31319755 ( 14) GCGGCCGCGGCGCGGC 1 chr19:5903610-5904110 ( 74) CGCGCCGGGGACCGGC 1 chr19:4471865-4472365 ( 80) GCCGTCACGGGCCGGC 1 chr15:74099994-74100494 ( 23) GAAGCCAGGGCCCGGG 1 chr15:75335784-75336284 ( 82) GAAGCCAGGGCCCGGG 1 chr12:106773816-10677431 ( 80) GAGGCCAGCGGCGGGG 1 chr2:55419639-55420139 ( 57) GGCGCTGGCGGGCGGC 1 chr17:45148395-45148895 ( 56) GAGGCTACGGCCGGGC 1 chr19:49766580-49767080 ( 9) GGAGCTGGGGAGGGGG 1 chr16:29805344-29805844 ( 81) GGGGGCACGGACGGGG 1 chr19:17606257-17606757 ( 32) CGGGGCAGGGGCGGGG 1 chr6:31958737-31959237 ( 65) CGCGCCTGGGGCCGCC 1 chr15:75625632-75626132 ( 56) TCGGCTAGGGAGGGGG 1 chr19:10602507-10603007 ( 25) GGGGACGCGGGGCGAC 1 chr22:42614698-42615198 ( 15) GCCGCTAGGGAGCGAC 1 chr19:37655849-37656349 ( 54) TACGCGGGGGCGCGGC 1 chr16:30650431-30650931 ( 34) GAAGACGGGGACCGGC 1 chr13:113296788-11329728 ( 28) GGGGACTGGGGCCGAG 1 chr9:34665761-34666261 ( 58) GGAGCCAGGGAGGGCG 1 chr3:31532209-31532709 ( 68) TCCGTTAGGGGGCGGG 1 chr19:38831504-38832004 ( 57) GGCGATGGCGGCGGGG 1 chr19:36054775-36055275 ( 71) TCCGGCGCGGAGGGGC 1 chr19:39532468-39532968 ( 17) GCAGTCGGCGGCGGGG 1 chr2:159712298-159712798 ( 24) CGGGAGAGGGGCGGGC 1 chr3:169966478-169966978 ( 63) CGGGCCTCGGGGCGCG 1 chr6:87155291-87155791 ( 77) TACGCGACGGAGCGGG 1 chr19:16197636-16198136 ( 52) GGAGCCGCGCGGGGAC 1 chr7:100874695-100875195 ( 34) GCGGCCTCGGGAGGCG 1 chrX:73944039-73944539 ( 30) ACGGCTGGGCGCCGGG 1 chr15:65610856-65611356 ( 41) GGCGATGGGCACGGGG 1 chr12:42325932-42326432 ( 48) GCGGCGAGCGGACGGC 1 chr16:23149328-23149828 ( 50) GAGGCTGCGGGCGCGG 1 chr12:6470413-6470913 ( 17) TCCGCCTCGCGCCGAC 1 chr3:142578556-142579056 ( 25) TCCGTCGGGCGCCGCG 1 chr12:76764168-76764668 ( 28) GAGGGCGGCGGCCGAC 1 chr1:40979693-40980193 ( 19) ACCGCGGCGGCGGGGC 1 chr20:45791582-45792082 ( 73) TGGGCGAGGCGCGGCG 1 chr15:42920698-42921198 ( 75) CCGGTGGGGGGCGGAG 1 chr13:20567064-20567564 ( 37) GCCGCAGGGGCACGGC 1 chr10:102152062-10215256 ( 45) TGCGCCGCGCGGGCGC 1 chr10:117375481-11737598 ( 19) GACGGCTGGGGACGCG 1 chr6:151451971-151452471 ( 57) GCCGCGTCGCCGCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.2874 E= 8.7e-003 -253 -73 139 -36 -21 77 69 -1207 -72 93 77 -1207 -1207 -1207 211 -1207 -95 144 -99 -121 -353 127 -31 -21 47 -1207 101 -72 -1207 69 144 -1207 -1207 -73 190 -1207 -1207 -31 182 -1207 -21 -14 127 -1207 -153 121 69 -1207 -1207 127 93 -1207 -1207 -231 204 -1207 -53 -51 149 -1207 -1207 108 115 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 43 E= 8.7e-003 0.046512 0.139535 0.604651 0.209302 0.232558 0.395349 0.372093 0.000000 0.162791 0.441860 0.395349 0.000000 0.000000 0.000000 1.000000 0.000000 0.139535 0.627907 0.116279 0.116279 0.023256 0.558140 0.186047 0.232558 0.372093 0.000000 0.465116 0.162791 0.000000 0.372093 0.627907 0.000000 0.000000 0.139535 0.860465 0.000000 0.000000 0.186047 0.813953 0.000000 0.232558 0.209302 0.558140 0.000000 0.093023 0.534884 0.372093 0.000000 0.000000 0.558140 0.441860 0.000000 0.000000 0.046512 0.953488 0.000000 0.186047 0.162791 0.651163 0.000000 0.000000 0.488372 0.511628 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVSGCCRSGGGSSGGS MEME-5 regular expression -------------------------------------------------------------------------------- [GT][CGA][CG]GC[CT][GA][GC]GG[GAC][CG][CG]GG[GC] -------------------------------------------------------------------------------- Time 2413.17 secs. ******************************************************************************** ******************************************************************************** MOTIF RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 width = 46 sites = 8 llr = 239 E-value = 1.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 Description -------------------------------------------------------------------------------- Simplified A 611::453::8::::5::311:41::63:1:6:11::::::3:3:1 pos.-specific C :4449113:91a11:148146:3618154311a64:363531a635 probability G 4515:345::1:9:a33:4338133::36:91:31863855::184 matrix T ::4113::a1:::9:14333:33:633::6:1::4311::36:::: bits 2.1 * * * * 1.9 * * * * * 1.7 * * * * * 1.5 * ** **** * * * Relative 1.3 * ** **** * * * * * * * * * Entropy 1.1 * * ** **** * * * * * * * ** * * (43.2 bits) 0.8 * * ******* * ** * * * * ** ***** *** 0.6 ** ** ********* * ** ******** ** *********** 0.4 ** ** ********* ** ** *********** *********** 0.2 ***** ************ *** *********************** 0.0 ---------------------------------------------- Multilevel AGCGCAAGTCACGTGACCGCCGACTCACGTGACCCGGCGCGTCCGC consensus GCTC GGA GTTAGGTCGGTTACC GTTCGCGCA ACG sequence T C G TT T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------------------------- chr15:74099994-74100494 - 50 7.73e-22 CCGTT AGTCCAAGTCACGTGATCGTCGACTCAGCTGACCTGGCGGGACCGG AAAAAGAAAT chr15:75335784-75336284 + 25 1.33e-20 AGAGGCAGTT AGTCCAAGTCACGTGATCGTCGACTCAGCTGACCCTGCGGGACCGG AAAAAGAAAT chr15:72375743-72376243 - 49 8.58e-15 CACGGG GGCGCCGCTCACCTGACCAGGGTCTCACGTGGCCAGCCCCCTCCGA GAGGGGAGAC chr13:113296788-11329728 + 50 4.77e-14 CCCCCGGACC AGGCCGGGTCACGTGGGTCCAGGGTCACGTGCCGCTGCGGGTCACG TGCCG chr14:20454966-20455466 + 7 1.41e-13 AAGCGC GCCTCTGATCACGTGACCAGGTCCGCTACCCACGTGGGGGCTCAGC GTGCACCCTT chr9:97922035-97922535 + 15 1.41e-13 CCCGCTCGCC AAAGCACATCACGTGGTCTCCGCAGCACGTGACCCGTGCCTTCGCC GTAGGTAAAA chr8:11284172-11284672 + 30 1.03e-12 CCAACTTCCG GCTGCGACTTCCGCGTCTTCCGAGTTTCGAGACCTGCTGCTTCCGC CCGGAGTTGT chr19:55407879-55408379 - 40 3.55e-12 CCCCAGGAAG ACCGTTAGTCGCGTGCGCGACTTCCTCAGCGTCAGGGCGCGCCCGC GCGTATGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:74099994-74100494 7.7e-22 49_[-6]_5 chr15:75335784-75336284 1.3e-20 24_[+6]_30 chr15:72375743-72376243 8.6e-15 48_[-6]_6 chr13:113296788-11329728 4.8e-14 49_[+6]_5 chr14:20454966-20455466 1.4e-13 6_[+6]_48 chr9:97922035-97922535 1.4e-13 14_[+6]_40 chr8:11284172-11284672 1e-12 29_[+6]_25 chr19:55407879-55408379 3.5e-12 39_[-6]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS width=46 seqs=8 chr15:74099994-74100494 ( 50) AGTCCAAGTCACGTGATCGTCGACTCAGCTGACCTGGCGGGACCGG 1 chr15:75335784-75336284 ( 25) AGTCCAAGTCACGTGATCGTCGACTCAGCTGACCCTGCGGGACCGG 1 chr15:72375743-72376243 ( 49) GGCGCCGCTCACCTGACCAGGGTCTCACGTGGCCAGCCCCCTCCGA 1 chr13:113296788-11329728 ( 50) AGGCCGGGTCACGTGGGTCCAGGGTCACGTGCCGCTGCGGGTCACG 1 chr14:20454966-20455466 ( 7) GCCTCTGATCACGTGACCAGGTCCGCTACCCACGTGGGGGCTCAGC 1 chr9:97922035-97922535 ( 15) AAAGCACATCACGTGGTCTCCGCAGCACGTGACCCGTGCCTTCGCC 1 chr8:11284172-11284672 ( 30) GCTGCGACTTCCGCGTCTTCCGAGTTTCGAGACCTGCTGCTTCCGC 1 chr19:55407879-55408379 ( 40) ACCGTTAGTCGCGTGCGCGACTTCCTCAGCGTCAGGGCGCGCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 46 n= 33000 bayes= 12.0098 E= 1.6e-003 122 -965 70 -965 -110 70 111 -965 -110 70 -89 48 -965 70 111 -110 -965 192 -965 -110 48 -89 11 -11 89 -89 70 -965 -11 11 111 -965 -965 -965 -965 189 -965 192 -965 -110 148 -89 -89 -965 -965 211 -965 -965 -965 -89 192 -965 -965 -89 -965 170 -965 -965 211 -965 89 -89 11 -110 -965 70 11 48 -965 170 -965 -11 -11 -89 70 -11 -110 70 11 -11 -110 143 11 -965 -965 -965 170 -11 48 11 -89 -11 -110 143 11 -965 -965 -89 11 122 -965 170 -965 -11 122 -89 -965 -11 -11 111 11 -965 -965 70 143 -965 -110 11 -965 122 -965 -89 192 -965 122 -89 -89 -110 -965 211 -965 -965 -110 143 11 -965 -110 70 -89 48 -965 -965 170 -11 -965 11 143 -110 -965 143 11 -110 -965 11 170 -965 -965 111 111 -965 -965 11 111 -11 -11 -89 -965 122 -965 211 -965 -965 -11 143 -89 -965 -965 11 170 -965 -110 111 70 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 46 nsites= 8 E= 1.6e-003 0.625000 0.000000 0.375000 0.000000 0.125000 0.375000 0.500000 0.000000 0.125000 0.375000 0.125000 0.375000 0.000000 0.375000 0.500000 0.125000 0.000000 0.875000 0.000000 0.125000 0.375000 0.125000 0.250000 0.250000 0.500000 0.125000 0.375000 0.000000 0.250000 0.250000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.125000 0.750000 0.125000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.500000 0.125000 0.250000 0.125000 0.000000 0.375000 0.250000 0.375000 0.000000 0.750000 0.000000 0.250000 0.250000 0.125000 0.375000 0.250000 0.125000 0.375000 0.250000 0.250000 0.125000 0.625000 0.250000 0.000000 0.000000 0.000000 0.750000 0.250000 0.375000 0.250000 0.125000 0.250000 0.125000 0.625000 0.250000 0.000000 0.000000 0.125000 0.250000 0.625000 0.000000 0.750000 0.000000 0.250000 0.625000 0.125000 0.000000 0.250000 0.250000 0.500000 0.250000 0.000000 0.000000 0.375000 0.625000 0.000000 0.125000 0.250000 0.000000 0.625000 0.000000 0.125000 0.875000 0.000000 0.625000 0.125000 0.125000 0.125000 0.000000 1.000000 0.000000 0.000000 0.125000 0.625000 0.250000 0.000000 0.125000 0.375000 0.125000 0.375000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.625000 0.125000 0.000000 0.625000 0.250000 0.125000 0.000000 0.250000 0.750000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.250000 0.500000 0.250000 0.250000 0.125000 0.000000 0.625000 0.000000 1.000000 0.000000 0.000000 0.250000 0.625000 0.125000 0.000000 0.000000 0.250000 0.750000 0.000000 0.125000 0.500000 0.375000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSYSCDRVTCACGTGRBCDBCGHCTCAVSTGACCYGGCGSBTCCGS MEME-6 regular expression -------------------------------------------------------------------------------- [AG][GC][CT][GC]C[AGT][AG][GAC]TCACGTG[AG][CTG][CT][GAT][CGT][CG][GT][ACT][CG][TG][CT][AT][CAG][GC][TC]GAC[CG][CT][GT][GC][CG][GC][CG][GCT][TA]C[CA][GC][CG] -------------------------------------------------------------------------------- Time 2855.53 secs. ******************************************************************************** ******************************************************************************** MOTIF VACMGTTAT MEME-7 width = 9 sites = 78 llr = 687 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 Description -------------------------------------------------------------------------------- Simplified A 38:4:::a: pos.-specific C 2:a6::::2 probability G 41::a:::2 matrix T 11:::aa:6 bits 2.1 * * 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ****** (12.7 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ********* 0.0 --------- Multilevel GACCGTTAT consensus A A C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr14:49620614-49621114 - 1 4.01e-06 CTCCGGCGGG GACCGTTAT chr10:73908861-73909361 - 64 4.01e-06 GAGGTTTGGA GACCGTTAT GAAGCGTGAC chr2:144519862-144520362 + 27 4.01e-06 CGGGAGGCAG GACCGTTAT TCCTGCAGAG chr19:39996916-39997416 + 2 8.68e-06 T AACCGTTAT TATTCACTTG chr7:124031346-124031846 - 26 8.68e-06 CAAACAGCAA AACCGTTAT ACCTTAACAT chr10:31319255-31319755 + 42 8.68e-06 gcTCTCCCTG AACCGTTAT GTCTCTTACC chr8:11863798-11864298 - 9 1.34e-05 TCTACTGAGG GACAGTTAT GTTATTTC chr10:61898228-61898728 - 6 1.34e-05 ATCCATTCAG GACAGTTAT AATCA chr4:158810789-158811289 - 83 1.34e-05 GTGACTTTT GACAGTTAT AATCTTAGAT chr15:66153970-66154470 - 49 1.34e-05 AAATTGCTCT GACAGTTAT GATGTTGTTG chr12:10363364-10363864 - 46 1.34e-05 AAGAAACAAA GACAGTTAT TCAATTGAGA chr17:41504528-41505028 - 67 1.34e-05 CTGCTTTCCA GACAGTTAT GTTATTCATG chr11:17277202-17277702 + 57 1.34e-05 GGTCTTAGAT GACAGTTAT TTTACAGTAT chr8:80330504-80331004 - 80 1.34e-05 TTCCTTTAGT GACAGTTAT ACTCCTTACA chr10:72320662-72321162 - 59 1.74e-05 GCGCCTTCCC CACCGTTAT CTGACTCATC chr9:1034224-1034724 - 88 1.74e-05 CTGA CACCGTTAT TTTTAATCTA chr5:115842914-115843414 - 52 2.28e-05 AATACCACAC AACAGTTAT ACCTCACATT chr8:17766221-17766721 - 48 2.28e-05 CAAATGGTGC AACAGTTAT TCCAGTCAAG chr7:158615954-158616454 - 45 2.28e-05 TACATCTAAA AACAGTTAT GTAAGTAAGA chr18:10121973-10122473 - 42 2.28e-05 TTGGCACAGA AACAGTTAT GTGACCCAAA chr3:130425510-130426010 - 87 2.28e-05 AGAGG AACAGTTAT ATTACGCATC chr5:126055332-126055832 + 64 2.28e-05 CTGTTTATCT AACAGTTAT GAGAATTAAC chr1:120176243-120176743 + 11 2.28e-05 CCGCCGCGAC AACAGTTAT ACCCTATGTC chr14:50961870-50962370 + 44 2.28e-05 tttatgtagg aacagttat tcattgtaag chr1:88145634-88146134 + 92 2.28e-05 TAAAAGTTTA AACAGTTAT chr5:160081443-160081943 + 24 2.28e-05 TCGTTGAAAT AACAGTTAT AACAAGATAA chr21:34857057-34857557 + 70 2.62e-05 TATACAGCCA GACCGTTAC AATCGCATAG chr12:106955181-10695568 + 71 2.62e-05 GAATTCCGAA GACCGTTAC TCGGCGCGGA chr6:28141382-28141882 + 28 2.62e-05 ACCCCCAGGG GACCGTTAC TATTGACAGC chr18:11696354-11696854 + 52 2.62e-05 ACTTGTTATA GACCGTTAC AGCAATGATA chr9:34665761-34666261 + 86 2.62e-05 CCCGGAAACG GACCGTTAC TATTAC chr2:47176421-47176921 + 28 3.44e-05 CCCCTTTCTT CACAGTTAT TTGGTCGATG chr16:29805344-29805844 + 44 3.44e-05 TGAGGCCTGC GACCGTTAG GCGGGCGCGC chr20:31604137-31604637 - 46 3.44e-05 CAGCGGCTCA GACCGTTAG ACGCCAGGCC chr14:58427149-58427649 - 57 3.44e-05 CGCTTCCGAA GACCGTTAG GGACGTGGGA chr12:106773816-10677431 - 70 3.44e-05 GCGGCGGGGA GACCGTTAG AGGGAGGGTC chr20:20215914-20216414 + 86 3.44e-05 CTGAATGCTA CACAGTTAT GGGAGG chr6:29552430-29552930 + 61 3.44e-05 tatacagtta cacagttat acagttgcct chr1:184935851-184936351 - 79 3.44e-05 AATCTGGGAA CACAGTTAT GTTTGGATGA chr10:17228249-17228749 - 20 4.64e-05 GTTTAGGGGA AACCGTTAG ACCAGATTGA chr7:99504963-99505463 - 57 4.64e-05 AACGGGGTTA AACCGTTAG ATCCCACCCC chr5:68240106-68240606 - 44 4.64e-05 GACCACAAGT GACAGTTAC AATATAACTG chr4:70778943-70779443 + 39 4.64e-05 TTCTTCCTGG GACAGTTAC ATAGATAAGG chr6:28136572-28137072 + 53 4.64e-05 GCTGTTTGGG AACCGTTAG CAACCGGAAG chr7:132410270-132410770 + 11 4.64e-05 ccaCAGGGAT AACCGTTAG AACTGCCAAC chr6:166006002-166006502 + 76 4.64e-05 TCATAAATCA AACCGTTAG GCCGTCACGT chr20:45791582-45792082 - 63 4.64e-05 CCTCGCCCAG GACAGTTAC ACTTAGAGGC chrX:38060447-38060947 - 89 5.04e-05 CGT GACAGTTAG GAATTTACTT chr12:116718810-11671931 + 9 6.60e-05 ACAAATGA GTCCGTTAT CTCAGACGAA chr18:22349945-22350445 + 35 6.60e-05 CTTTACGTTG AACAGTTAC TTTGCTTCAA chr19:47035054-47035554 - 33 6.60e-05 GCTTCCCTCA GTCCGTTAT CCCTCTGGGC chr16:30558083-30558583 - 54 6.60e-05 CTGCCATCGG CACCGTTAG TTTCCACGCC chr10:22599848-22600348 + 61 6.60e-05 CTCATTTAGT AACAGTTAC TTTTCCCTGC chr6:4109404-4109904 - 89 7.06e-05 AAG AACAGTTAG TCCTTACAAG chr16:22386875-22387375 + 49 7.06e-05 CACATGGAAG AACAGTTAG TTGATCAAGT chr1:93554082-93554582 - 65 7.06e-05 GCTTGAAAAG AACAGTTAG TCCTTACAAG chr2:56474793-56475293 + 56 8.74e-05 ATGATACTGC TACCGTTAT ACAAGGCTCA chr15:75625632-75626132 + 17 8.74e-05 GTTGCCTACA GGCCGTTAT TTCCGCCTTC chr15:88918686-88919186 + 27 8.74e-05 GAAACAACTG CACAGTTAC CCAATTAAGA chr1:184037557-184038057 - 38 8.74e-05 CTTGGGGTTG TACCGTTAT GTACACACAC chr1:144412433-144412933 + 3 8.74e-05 tt atccgttat gttccgggtg chr4:169062732-169063232 - 53 8.74e-05 TAACCACCAA GGCCGTTAT GATAACAAAT chr10:77287712-77288212 + 89 1.04e-04 TGGCAATAAA CTCCGTTAT CAC chr6:112956680-112957180 - 74 1.04e-04 TTTACATGCT CTCCGTTAT GTTAGTGTTG chr3:159765602-159766102 - 40 1.04e-04 CTGTAAGTGG CTCCGTTAT CAAAACAAGG chr7:100874695-100875195 + 88 1.04e-04 CTAACGCTCG AGCCGTTAT CGTC chr5:14168879-14169379 + 81 1.04e-04 TTATGTTCAA CTCCGTTAT ATTCTTTTTT chr17:63549926-63550426 + 77 1.04e-04 ACCCGCACTG AGCCGTTAT CTGCCTGACT chr17:70969566-70970066 - 71 1.04e-04 GAAAATGTGG CTCCGTTAT GCCGTGTTCT chr7:82156103-82156603 + 21 1.19e-04 tacttttggt atcagttat cccagcagga chr19:37466977-37467477 + 35 1.26e-04 ACAAGTCTCG GTCCGTTAC ACCAGGGGCG chr12:55997025-55997525 - 34 1.26e-04 GCGGGGCCAG CGCCGTTAT GTCCGGCTGC chr12:121016261-12101676 + 46 1.26e-04 TGGAGAACAC CGCCGTTAT CAAGCCTCCT chr1:110338871-110339371 + 74 1.50e-04 GAGCAAGAAG TACCGTTAC AGGGCAGACT chr1:45499987-45500487 - 85 1.50e-04 ACAATTG GGCCGTTAC GTTTTGAGTC chr18:74147672-74148172 - 27 1.50e-04 AGGGTGGGCA TACCGTTAC TTTTGCTCAC chr6:34757300-34757800 - 12 1.80e-04 CCGTTGGCCA CTCCGTTAC GTGACGCCCG chr12:104645-105145 + 72 1.99e-04 TCTCAGTCGA TACAGTTAC GTCTTCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:49620614-49621114 4e-06 [-7]_91 chr10:73908861-73909361 4e-06 63_[-7]_28 chr2:144519862-144520362 4e-06 26_[+7]_65 chr19:39996916-39997416 8.7e-06 1_[+7]_90 chr7:124031346-124031846 8.7e-06 25_[-7]_66 chr10:31319255-31319755 8.7e-06 41_[+7]_50 chr8:11863798-11864298 1.3e-05 8_[-7]_83 chr10:61898228-61898728 1.3e-05 5_[-7]_86 chr4:158810789-158811289 1.3e-05 82_[-7]_9 chr15:66153970-66154470 1.3e-05 48_[-7]_43 chr12:10363364-10363864 1.3e-05 45_[-7]_46 chr17:41504528-41505028 1.3e-05 66_[-7]_25 chr11:17277202-17277702 1.3e-05 56_[+7]_35 chr8:80330504-80331004 1.3e-05 79_[-7]_12 chr10:72320662-72321162 1.7e-05 58_[-7]_33 chr9:1034224-1034724 1.7e-05 87_[-7]_4 chr5:115842914-115843414 2.3e-05 51_[-7]_40 chr8:17766221-17766721 2.3e-05 47_[-7]_44 chr7:158615954-158616454 2.3e-05 44_[-7]_47 chr18:10121973-10122473 2.3e-05 41_[-7]_50 chr3:130425510-130426010 2.3e-05 86_[-7]_5 chr5:126055332-126055832 2.3e-05 63_[+7]_28 chr1:120176243-120176743 2.3e-05 10_[+7]_81 chr14:50961870-50962370 2.3e-05 43_[+7]_48 chr1:88145634-88146134 2.3e-05 91_[+7] chr5:160081443-160081943 2.3e-05 23_[+7]_68 chr21:34857057-34857557 2.6e-05 69_[+7]_22 chr12:106955181-10695568 2.6e-05 70_[+7]_21 chr6:28141382-28141882 2.6e-05 27_[+7]_64 chr18:11696354-11696854 2.6e-05 51_[+7]_40 chr9:34665761-34666261 2.6e-05 85_[+7]_6 chr2:47176421-47176921 3.4e-05 27_[+7]_64 chr16:29805344-29805844 3.4e-05 43_[+7]_48 chr20:31604137-31604637 3.4e-05 45_[-7]_46 chr14:58427149-58427649 3.4e-05 56_[-7]_35 chr12:106773816-10677431 3.4e-05 69_[-7]_22 chr20:20215914-20216414 3.4e-05 85_[+7]_6 chr6:29552430-29552930 3.4e-05 60_[+7]_31 chr1:184935851-184936351 3.4e-05 78_[-7]_13 chr10:17228249-17228749 4.6e-05 19_[-7]_72 chr7:99504963-99505463 4.6e-05 56_[-7]_35 chr5:68240106-68240606 4.6e-05 43_[-7]_48 chr4:70778943-70779443 4.6e-05 38_[+7]_53 chr6:28136572-28137072 4.6e-05 52_[+7]_39 chr7:132410270-132410770 4.6e-05 10_[+7]_81 chr6:166006002-166006502 4.6e-05 75_[+7]_16 chr20:45791582-45792082 4.6e-05 62_[-7]_29 chrX:38060447-38060947 5e-05 88_[-7]_3 chr12:116718810-11671931 6.6e-05 8_[+7]_83 chr18:22349945-22350445 6.6e-05 34_[+7]_57 chr19:47035054-47035554 6.6e-05 32_[-7]_59 chr16:30558083-30558583 6.6e-05 53_[-7]_38 chr10:22599848-22600348 6.6e-05 60_[+7]_31 chr6:4109404-4109904 7.1e-05 88_[-7]_3 chr16:22386875-22387375 7.1e-05 48_[+7]_43 chr1:93554082-93554582 7.1e-05 64_[-7]_27 chr2:56474793-56475293 8.7e-05 55_[+7]_36 chr15:75625632-75626132 8.7e-05 16_[+7]_75 chr15:88918686-88919186 8.7e-05 26_[+7]_65 chr1:184037557-184038057 8.7e-05 37_[-7]_54 chr1:144412433-144412933 8.7e-05 2_[+7]_89 chr4:169062732-169063232 8.7e-05 52_[-7]_39 chr10:77287712-77288212 0.0001 88_[+7]_3 chr6:112956680-112957180 0.0001 73_[-7]_18 chr3:159765602-159766102 0.0001 39_[-7]_52 chr7:100874695-100875195 0.0001 87_[+7]_4 chr5:14168879-14169379 0.0001 80_[+7]_11 chr17:63549926-63550426 0.0001 76_[+7]_15 chr17:70969566-70970066 0.0001 70_[-7]_21 chr7:82156103-82156603 0.00012 20_[+7]_71 chr19:37466977-37467477 0.00013 34_[+7]_57 chr12:55997025-55997525 0.00013 33_[-7]_58 chr12:121016261-12101676 0.00013 45_[+7]_46 chr1:110338871-110339371 0.00015 73_[+7]_18 chr1:45499987-45500487 0.00015 84_[-7]_7 chr18:74147672-74148172 0.00015 26_[-7]_65 chr6:34757300-34757800 0.00018 11_[-7]_80 chr12:104645-105145 0.0002 71_[+7]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VACMGTTAT width=9 seqs=78 chr14:49620614-49621114 ( 1) GACCGTTAT 1 chr10:73908861-73909361 ( 64) GACCGTTAT 1 chr2:144519862-144520362 ( 27) GACCGTTAT 1 chr19:39996916-39997416 ( 2) AACCGTTAT 1 chr7:124031346-124031846 ( 26) AACCGTTAT 1 chr10:31319255-31319755 ( 42) AACCGTTAT 1 chr8:11863798-11864298 ( 9) GACAGTTAT 1 chr10:61898228-61898728 ( 6) GACAGTTAT 1 chr4:158810789-158811289 ( 83) GACAGTTAT 1 chr15:66153970-66154470 ( 49) GACAGTTAT 1 chr12:10363364-10363864 ( 46) GACAGTTAT 1 chr17:41504528-41505028 ( 67) GACAGTTAT 1 chr11:17277202-17277702 ( 57) GACAGTTAT 1 chr8:80330504-80331004 ( 80) GACAGTTAT 1 chr10:72320662-72321162 ( 59) CACCGTTAT 1 chr9:1034224-1034724 ( 88) CACCGTTAT 1 chr5:115842914-115843414 ( 52) AACAGTTAT 1 chr8:17766221-17766721 ( 48) AACAGTTAT 1 chr7:158615954-158616454 ( 45) AACAGTTAT 1 chr18:10121973-10122473 ( 42) AACAGTTAT 1 chr3:130425510-130426010 ( 87) AACAGTTAT 1 chr5:126055332-126055832 ( 64) AACAGTTAT 1 chr1:120176243-120176743 ( 11) AACAGTTAT 1 chr14:50961870-50962370 ( 44) AACAGTTAT 1 chr1:88145634-88146134 ( 92) AACAGTTAT 1 chr5:160081443-160081943 ( 24) AACAGTTAT 1 chr21:34857057-34857557 ( 70) GACCGTTAC 1 chr12:106955181-10695568 ( 71) GACCGTTAC 1 chr6:28141382-28141882 ( 28) GACCGTTAC 1 chr18:11696354-11696854 ( 52) GACCGTTAC 1 chr9:34665761-34666261 ( 86) GACCGTTAC 1 chr2:47176421-47176921 ( 28) CACAGTTAT 1 chr16:29805344-29805844 ( 44) GACCGTTAG 1 chr20:31604137-31604637 ( 46) GACCGTTAG 1 chr14:58427149-58427649 ( 57) GACCGTTAG 1 chr12:106773816-10677431 ( 70) GACCGTTAG 1 chr20:20215914-20216414 ( 86) CACAGTTAT 1 chr6:29552430-29552930 ( 61) CACAGTTAT 1 chr1:184935851-184936351 ( 79) CACAGTTAT 1 chr10:17228249-17228749 ( 20) AACCGTTAG 1 chr7:99504963-99505463 ( 57) AACCGTTAG 1 chr5:68240106-68240606 ( 44) GACAGTTAC 1 chr4:70778943-70779443 ( 39) GACAGTTAC 1 chr6:28136572-28137072 ( 53) AACCGTTAG 1 chr7:132410270-132410770 ( 11) AACCGTTAG 1 chr6:166006002-166006502 ( 76) AACCGTTAG 1 chr20:45791582-45792082 ( 63) GACAGTTAC 1 chrX:38060447-38060947 ( 89) GACAGTTAG 1 chr12:116718810-11671931 ( 9) GTCCGTTAT 1 chr18:22349945-22350445 ( 35) AACAGTTAC 1 chr19:47035054-47035554 ( 33) GTCCGTTAT 1 chr16:30558083-30558583 ( 54) CACCGTTAG 1 chr10:22599848-22600348 ( 61) AACAGTTAC 1 chr6:4109404-4109904 ( 89) AACAGTTAG 1 chr16:22386875-22387375 ( 49) AACAGTTAG 1 chr1:93554082-93554582 ( 65) AACAGTTAG 1 chr2:56474793-56475293 ( 56) TACCGTTAT 1 chr15:75625632-75626132 ( 17) GGCCGTTAT 1 chr15:88918686-88919186 ( 27) CACAGTTAC 1 chr1:184037557-184038057 ( 38) TACCGTTAT 1 chr1:144412433-144412933 ( 3) ATCCGTTAT 1 chr4:169062732-169063232 ( 53) GGCCGTTAT 1 chr10:77287712-77288212 ( 89) CTCCGTTAT 1 chr6:112956680-112957180 ( 74) CTCCGTTAT 1 chr3:159765602-159766102 ( 40) CTCCGTTAT 1 chr7:100874695-100875195 ( 88) AGCCGTTAT 1 chr5:14168879-14169379 ( 81) CTCCGTTAT 1 chr17:63549926-63550426 ( 77) AGCCGTTAT 1 chr17:70969566-70970066 ( 71) CTCCGTTAT 1 chr7:82156103-82156603 ( 21) ATCAGTTAT 1 chr19:37466977-37467477 ( 35) GTCCGTTAC 1 chr12:55997025-55997525 ( 34) CGCCGTTAT 1 chr12:121016261-12101676 ( 46) CGCCGTTAT 1 chr1:110338871-110339371 ( 74) TACCGTTAC 1 chr1:45499987-45500487 ( 85) GGCCGTTAC 1 chr18:74147672-74148172 ( 27) TACCGTTAC 1 chr6:34757300-34757800 ( 12) CTCCGTTAC 1 chr12:104645-105145 ( 72) TACAGTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 10.9238 E= 4.0e+001 36 -17 73 -207 152 -1293 -136 -93 -1293 211 -1293 -1293 70 129 -1293 -1293 -1293 -1293 211 -1293 -1293 -1293 -1293 189 -1293 -1293 -1293 189 189 -1293 -1293 -1293 -1293 -8 -36 116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 78 E= 4.0e+001 0.346154 0.205128 0.384615 0.064103 0.769231 0.000000 0.089744 0.141026 0.000000 1.000000 0.000000 0.000000 0.435897 0.564103 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.217949 0.179487 0.602564 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VACMGTTAT MEME-7 regular expression -------------------------------------------------------------------------------- [GAC]AC[CA]GTTA[TC] -------------------------------------------------------------------------------- Time 3287.52 secs. ******************************************************************************** ******************************************************************************** MOTIF WATAAATAAADAWAWAAATAAA MEME-8 width = 22 sites = 8 llr = 159 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 Description -------------------------------------------------------------------------------- Simplified A 5938a8:9893a6a59a8198a pos.-specific C :::3:3::::::::::::1::: probability G :1::::::3:3::::1:3:11: matrix T 5:8:::a1:15:4:5:::8:1: bits 2.1 1.9 * * * * * * 1.7 * * * * * * 1.5 * * * * * ** * * Relative 1.3 * * ** * * * ** * * Entropy 1.1 ********* * * *** * * (28.7 bits) 0.8 ********** *********** 0.6 ********** *********** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel AATAAATAAATAAAAAAATAAA consensus T AC C G A T T G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:40567075-40567575 + 49 1.14e-12 taaataaata aataaataaataaataaataaa GTCTTAAAGT chr19:31332880-31333380 + 51 1.14e-12 taaataaata aataaataaataaataaataaa tCCAGGGGTG chr5:34182252-34182752 + 48 1.14e-12 taaataaata aataaataaataaataaataaa aaatCTGGGC chr19:35881939-35882439 + 12 5.74e-11 ggaccctgtc taaaaataaaaataaaaataaa aaataaataa chr9:95721054-95721554 + 22 2.05e-09 ACAAAGGGTT TATCACTAAATAAATAAATGTA ATCTACAGTT chr10:60042145-60042645 - 43 4.46e-09 CAGAAGCAAG TATAAATAGTGATAAGAGTAAA GGCTCACTAT chr17:48407085-48407585 + 42 6.27e-09 aggaggaagg aaacaataaagataaaagcaga aattagtgta chr1:53733857-53734357 - 6 9.73e-09 CAGTCAGTCT TGTAACTTGAAAAAAAAAAAAA AGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40567075-40567575 1.1e-12 48_[+8]_30 chr19:31332880-31333380 1.1e-12 50_[+8]_28 chr5:34182252-34182752 1.1e-12 47_[+8]_31 chr19:35881939-35882439 5.7e-11 11_[+8]_67 chr9:95721054-95721554 2e-09 21_[+8]_57 chr10:60042145-60042645 4.5e-09 42_[-8]_36 chr17:48407085-48407585 6.3e-09 41_[+8]_37 chr1:53733857-53734357 9.7e-09 5_[-8]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WATAAATAAADAWAWAAATAAA width=22 seqs=8 chr19:40567075-40567575 ( 49) AATAAATAAATAAATAAATAAA 1 chr19:31332880-31333380 ( 51) AATAAATAAATAAATAAATAAA 1 chr5:34182252-34182752 ( 48) AATAAATAAATAAATAAATAAA 1 chr19:35881939-35882439 ( 12) TAAAAATAAAAATAAAAATAAA 1 chr9:95721054-95721554 ( 22) TATCACTAAATAAATAAATGTA 1 chr10:60042145-60042645 ( 43) TATAAATAGTGATAAGAGTAAA 1 chr17:48407085-48407585 ( 42) AAACAATAAAGATAAAAGCAGA 1 chr1:53733857-53734357 ( 6) TGTAACTTGAAAAAAAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.2694 E= 2.4e+002 89 -965 -965 89 170 -965 -89 -965 -11 -965 -965 148 148 11 -965 -965 189 -965 -965 -965 148 11 -965 -965 -965 -965 -965 189 170 -965 -965 -110 148 -965 11 -965 170 -965 -965 -110 -11 -965 11 89 189 -965 -965 -965 122 -965 -965 48 189 -965 -965 -965 89 -965 -965 89 170 -965 -89 -965 189 -965 -965 -965 148 -965 11 -965 -110 -89 -965 148 170 -965 -89 -965 148 -965 -89 -110 189 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 8 E= 2.4e+002 0.500000 0.000000 0.000000 0.500000 0.875000 0.000000 0.125000 0.000000 0.250000 0.000000 0.000000 0.750000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.875000 0.000000 0.000000 0.125000 0.750000 0.000000 0.250000 0.000000 0.875000 0.000000 0.000000 0.125000 0.250000 0.000000 0.250000 0.500000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.375000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.125000 0.125000 0.000000 0.750000 0.875000 0.000000 0.125000 0.000000 0.750000 0.000000 0.125000 0.125000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATAAATAAADAWAWAAATAAA MEME-8 regular expression -------------------------------------------------------------------------------- [AT]A[TA][AC]A[AC]TA[AG]A[TAG]A[AT]A[AT]AA[AG]TAAA -------------------------------------------------------------------------------- Time 3712.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTAYTYTGSHW MEME-9 width = 14 sites = 49 llr = 503 E-value = 1.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 Description -------------------------------------------------------------------------------- Simplified A :1:::6:3:21133 pos.-specific C ::::::514::35: probability G :9::121:::75:: matrix T a:aa9246681237 bits 2.1 1.9 * 1.7 **** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** *** (14.8 bits) 0.8 ***** *** * 0.6 ***** *** * 0.4 ************** 0.2 ************** 0.0 -------------- Multilevel TGTTTACTTTGGCT consensus GTACA CAA sequence T TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr5:136420550-136421050 + 2 2.37e-08 G TGTTTGCTTTGGCT CAGGGCTGAT chr6:75524498-75524998 - 77 6.42e-08 TGTGCAGCTC TGTTTGTTTTGGCT TGCTTTCTTT chr16:15590841-15591341 - 52 1.46e-07 CTGTTTCAAG TGTTTATTCTGCCT CCGCTTGCAA chr17:61335991-61336491 + 29 1.86e-07 GTTATTTGGC TGTTTGCTTTGGCA GCTCTTGAAA chr3:16482936-16483436 - 50 2.31e-07 TACTCTGAAG TGTTTGTTTTGCCT TTCCTTAATG chr22:24727077-24727577 + 71 4.18e-07 aaagcaggga tgttttttctggct gatggccaaa chr5:88516304-88516804 - 57 7.98e-07 AAATTACAAG TGTTTACTCTGTAT CCATGAGTAA chr17:71176883-71177383 + 56 7.98e-07 ACTACCCATA TGTTTACTCTGTTT GTCACCAAGA chr10:10989648-10990148 - 53 9.13e-07 GTTACTTCAC TGTTTTCTTTGCAT GTCTCTGAAT chr15:81966569-81967069 - 79 1.42e-06 TATCTCTA TGTTTACTTTAGTT GTAGCCAAAC chr18:74861084-74861584 + 64 2.34e-06 AAAATCCAAA TGTTTAGTTTGCTT CTAGTCACTG chr6:82072019-82072519 - 38 2.66e-06 CTGGTGCTGC TGTTTATTTTTGCA TCTCTCCCCA chr10:33477330-33477830 - 69 2.66e-06 TGACATAACT TGTTTACTTTTTCT TGTCTCATTT chr5:119270089-119270589 - 9 2.98e-06 TGGAGTCATA TGTTTACACTGCAA AGTATAAT chr1:159916142-159916642 + 18 3.78e-06 gcgaattcaa tgttttctctgcaa tgacatcact chr5:54302228-54302728 - 25 3.78e-06 CAGTGCTGAG TGTTTTCCTTGGAT CACCTAATTT chr2:205280611-205281111 + 62 3.78e-06 TTGGATGAAG TGTTTATTTAGTTT GCTGGCTGTT chr5:14156547-14157047 - 49 4.22e-06 TTACTTCATC TGTTTTGTTTGGAT GACTAACTGA chr9:97845098-97845598 + 34 4.72e-06 aatgtcttct tgttggttttggct caggctccca chr6:79422064-79422564 + 38 5.83e-06 TGCATTATGG TGTTTACGTTGCTT GATTACAAGC chr17:8681171-8681671 + 22 5.83e-06 TCATAAAATG TGTTTTCCCTGGAT ATTTTCTCAT chr5:68240106-68240606 + 11 6.49e-06 TAGCCTTCAT TGTTTGGATTGGCA TTATGTGTAC chr12:806395-806895 + 8 7.16e-06 CAGGCAA TGTTTATTTTGATA TGACGTAGTT chr8:42843050-42843550 + 8 7.16e-06 GTTTTGT TGTTTGCATTAGCA GAAGGACCAC chr8:108689390-108689890 + 64 7.16e-06 ACTGGAATGA TGTTGGCTTTGGAT TCCAGTTTAT chr5:124599574-124600074 + 6 7.92e-06 TGTCC TGTTTTTTCAGTCT AATCTGTCAA chr1:145740166-145740666 + 65 7.92e-06 CTAAAGAGTT TATTTACTCTGCTT ATCTCGAGAC chr15:71747483-71747983 - 53 7.92e-06 GACACTGGTT TGTTTGGTTTGTTT CTGAGTCATA chr6:125050653-125051153 - 84 1.26e-05 CTT TGTTTACACTGGCG TCTATCAACA chr5:74632122-74632622 + 34 1.26e-05 TCAGAGCATT TGTTTATTCAAGAT TACTGAGATG chr7:85591881-85592381 + 35 1.26e-05 ACAGATAAAA TGTTTAAACTGGCA GTGTTCCTGG chr14:96574793-96575293 + 73 1.51e-05 tgaggaaaca ggtttattttggca gagtatcttg chr21:34857057-34857557 + 17 1.64e-05 ATATAACAAC TGTTTTCTTAAGTT GTAAAACAGC chr4:119730131-119730631 - 17 1.64e-05 TCACAAACAT TGTTTATGTTTGCT TTTGCCTGAC chr3:42819855-42820355 + 21 1.64e-05 AGACACCATC TGTTTATCTTGATT GCATAATAAA chr6:139152295-139152795 - 18 1.78e-05 CAGTTAAACA TGTTTTTCTTTGCT TACAGTAGGA chr6:168024038-168024538 + 30 1.78e-05 AGCTTCATCA TGTTTGTTTATGCA AACACTTGTG chr16:78184454-78184954 - 4 1.78e-05 AACCGAACAG TGTTTTTACTGTAA AAC chr8:25998503-25999003 + 14 1.93e-05 CAGATAATGA TGTTTAATTTGTTA TTGGCTGTGT chr14:58427149-58427649 - 76 1.93e-05 TACCAGGGAC TGTTGACACTGCTT CGCTTCCGAA chr10:61898228-61898728 + 57 2.64e-05 TGTTTATGAG TATTTACTTTACAT TAGCCCAGGG chr6:15956276-15956776 + 19 2.64e-05 gacttggggt tgtatacattggca tgcttccagg chr6:108676529-108677029 - 54 2.64e-05 TGTGGCTCAA TGTTTGTACATGCT TATCTGATTC chr10:21975264-21975764 + 83 2.64e-05 TTAGCAACTC TGTTTACACAGACA ATAG chr10:44752841-44753341 + 33 3.06e-05 TTTTAATAGT TGTTTATACAATCT GCCCAGCCAT chr6:124056833-124057333 - 84 3.06e-05 ATA TATTTACTTAGCAA ATGGGTTAAT chr1:35406003-35406503 - 87 3.29e-05 . TATTTACATAGCTT TGGAGCAGAC chr1:59214651-59215151 - 21 4.05e-05 CATTTCTGTG TGTTTGTATAACAT GAACTGGTGG chr16:77409229-77409729 - 49 5.28e-05 TCTGTGATAC TATTTATCCTGTCA TATCAGCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:136420550-136421050 2.4e-08 1_[+9]_85 chr6:75524498-75524998 6.4e-08 76_[-9]_10 chr16:15590841-15591341 1.5e-07 51_[-9]_35 chr17:61335991-61336491 1.9e-07 28_[+9]_58 chr3:16482936-16483436 2.3e-07 49_[-9]_37 chr22:24727077-24727577 4.2e-07 70_[+9]_16 chr5:88516304-88516804 8e-07 56_[-9]_30 chr17:71176883-71177383 8e-07 55_[+9]_31 chr10:10989648-10990148 9.1e-07 52_[-9]_34 chr15:81966569-81967069 1.4e-06 78_[-9]_8 chr18:74861084-74861584 2.3e-06 63_[+9]_23 chr6:82072019-82072519 2.7e-06 37_[-9]_49 chr10:33477330-33477830 2.7e-06 68_[-9]_18 chr5:119270089-119270589 3e-06 8_[-9]_78 chr1:159916142-159916642 3.8e-06 17_[+9]_69 chr5:54302228-54302728 3.8e-06 24_[-9]_62 chr2:205280611-205281111 3.8e-06 61_[+9]_25 chr5:14156547-14157047 4.2e-06 48_[-9]_38 chr9:97845098-97845598 4.7e-06 33_[+9]_53 chr6:79422064-79422564 5.8e-06 37_[+9]_49 chr17:8681171-8681671 5.8e-06 21_[+9]_65 chr5:68240106-68240606 6.5e-06 10_[+9]_76 chr12:806395-806895 7.2e-06 7_[+9]_79 chr8:42843050-42843550 7.2e-06 7_[+9]_79 chr8:108689390-108689890 7.2e-06 63_[+9]_23 chr5:124599574-124600074 7.9e-06 5_[+9]_81 chr1:145740166-145740666 7.9e-06 64_[+9]_22 chr15:71747483-71747983 7.9e-06 52_[-9]_34 chr6:125050653-125051153 1.3e-05 83_[-9]_3 chr5:74632122-74632622 1.3e-05 33_[+9]_53 chr7:85591881-85592381 1.3e-05 34_[+9]_52 chr14:96574793-96575293 1.5e-05 72_[+9]_14 chr21:34857057-34857557 1.6e-05 16_[+9]_70 chr4:119730131-119730631 1.6e-05 16_[-9]_70 chr3:42819855-42820355 1.6e-05 20_[+9]_66 chr6:139152295-139152795 1.8e-05 17_[-9]_69 chr6:168024038-168024538 1.8e-05 29_[+9]_57 chr16:78184454-78184954 1.8e-05 3_[-9]_83 chr8:25998503-25999003 1.9e-05 13_[+9]_73 chr14:58427149-58427649 1.9e-05 75_[-9]_11 chr10:61898228-61898728 2.6e-05 56_[+9]_30 chr6:15956276-15956776 2.6e-05 18_[+9]_68 chr6:108676529-108677029 2.6e-05 53_[-9]_33 chr10:21975264-21975764 2.6e-05 82_[+9]_4 chr10:44752841-44753341 3.1e-05 32_[+9]_54 chr6:124056833-124057333 3.1e-05 83_[-9]_3 chr1:35406003-35406503 3.3e-05 86_[-9] chr1:59214651-59215151 4.1e-05 20_[-9]_66 chr16:77409229-77409729 5.3e-05 48_[-9]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTAYTYTGSHW width=14 seqs=49 chr5:136420550-136421050 ( 2) TGTTTGCTTTGGCT 1 chr6:75524498-75524998 ( 77) TGTTTGTTTTGGCT 1 chr16:15590841-15591341 ( 52) TGTTTATTCTGCCT 1 chr17:61335991-61336491 ( 29) TGTTTGCTTTGGCA 1 chr3:16482936-16483436 ( 50) TGTTTGTTTTGCCT 1 chr22:24727077-24727577 ( 71) TGTTTTTTCTGGCT 1 chr5:88516304-88516804 ( 57) TGTTTACTCTGTAT 1 chr17:71176883-71177383 ( 56) TGTTTACTCTGTTT 1 chr10:10989648-10990148 ( 53) TGTTTTCTTTGCAT 1 chr15:81966569-81967069 ( 79) TGTTTACTTTAGTT 1 chr18:74861084-74861584 ( 64) TGTTTAGTTTGCTT 1 chr6:82072019-82072519 ( 38) TGTTTATTTTTGCA 1 chr10:33477330-33477830 ( 69) TGTTTACTTTTTCT 1 chr5:119270089-119270589 ( 9) TGTTTACACTGCAA 1 chr1:159916142-159916642 ( 18) TGTTTTCTCTGCAA 1 chr5:54302228-54302728 ( 25) TGTTTTCCTTGGAT 1 chr2:205280611-205281111 ( 62) TGTTTATTTAGTTT 1 chr5:14156547-14157047 ( 49) TGTTTTGTTTGGAT 1 chr9:97845098-97845598 ( 34) TGTTGGTTTTGGCT 1 chr6:79422064-79422564 ( 38) TGTTTACGTTGCTT 1 chr17:8681171-8681671 ( 22) TGTTTTCCCTGGAT 1 chr5:68240106-68240606 ( 11) TGTTTGGATTGGCA 1 chr12:806395-806895 ( 8) TGTTTATTTTGATA 1 chr8:42843050-42843550 ( 8) TGTTTGCATTAGCA 1 chr8:108689390-108689890 ( 64) TGTTGGCTTTGGAT 1 chr5:124599574-124600074 ( 6) TGTTTTTTCAGTCT 1 chr1:145740166-145740666 ( 65) TATTTACTCTGCTT 1 chr15:71747483-71747983 ( 53) TGTTTGGTTTGTTT 1 chr6:125050653-125051153 ( 84) TGTTTACACTGGCG 1 chr5:74632122-74632622 ( 34) TGTTTATTCAAGAT 1 chr7:85591881-85592381 ( 35) TGTTTAAACTGGCA 1 chr14:96574793-96575293 ( 73) GGTTTATTTTGGCA 1 chr21:34857057-34857557 ( 17) TGTTTTCTTAAGTT 1 chr4:119730131-119730631 ( 17) TGTTTATGTTTGCT 1 chr3:42819855-42820355 ( 21) TGTTTATCTTGATT 1 chr6:139152295-139152795 ( 18) TGTTTTTCTTTGCT 1 chr6:168024038-168024538 ( 30) TGTTTGTTTATGCA 1 chr16:78184454-78184954 ( 4) TGTTTTTACTGTAA 1 chr8:25998503-25999003 ( 14) TGTTTAATTTGTTA 1 chr14:58427149-58427649 ( 76) TGTTGACACTGCTT 1 chr10:61898228-61898728 ( 57) TATTTACTTTACAT 1 chr6:15956276-15956776 ( 19) TGTATACATTGGCA 1 chr6:108676529-108677029 ( 54) TGTTTGTACATGCT 1 chr10:21975264-21975764 ( 83) TGTTTACACAGACA 1 chr10:44752841-44753341 ( 33) TGTTTATACAATCT 1 chr6:124056833-124057333 ( 84) TATTTACTTAGCAA 1 chr1:35406003-35406503 ( 87) TATTTACATAGCTT 1 chr1:59214651-59215151 ( 21) TGTTTGTATAACAT 1 chr16:77409229-77409729 ( 49) TATTTATCCTGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 11.1729 E= 1.8e-001 -1226 -1226 -350 186 -140 -1226 196 -1226 -1226 -1226 -1226 189 -372 -1226 -1226 186 -1226 -1226 -192 180 103 -1226 8 -40 -272 102 -150 60 -2 -118 -250 114 -1226 67 -1226 123 -26 -1226 -1226 153 -91 -1226 167 -113 -213 20 102 -40 -2 102 -1226 -2 28 -1226 -350 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 49 E= 1.8e-001 0.000000 0.000000 0.020408 0.979592 0.102041 0.000000 0.897959 0.000000 0.000000 0.000000 0.000000 1.000000 0.020408 0.000000 0.000000 0.979592 0.000000 0.000000 0.061224 0.938776 0.551020 0.000000 0.244898 0.204082 0.040816 0.469388 0.081633 0.408163 0.265306 0.102041 0.040816 0.591837 0.000000 0.367347 0.000000 0.632653 0.224490 0.000000 0.000000 0.775510 0.142857 0.000000 0.734694 0.122449 0.061224 0.265306 0.469388 0.204082 0.265306 0.469388 0.000000 0.265306 0.326531 0.000000 0.020408 0.653061 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTYTGSHW MEME-9 regular expression -------------------------------------------------------------------------------- TGTTT[AGT][CT][TA][TC][TA]G[GCT][CAT][TA] -------------------------------------------------------------------------------- Time 4129.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 width = 29 sites = 7 llr = 162 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::::a1::::4::1::1:::33:741:: pos.-specific C :6::9:443:43:3:136:93:31:1133 probability G 94a41:463a63a797739:3647:4777 matrix T 1::6::::4::::::1::1141:13:::: bits 2.1 * * * 1.9 * * * * 1.7 * * * * 1.5 * * ** * * * ** Relative 1.3 * * ** * *** * ** ** Entropy 1.1 ****** * ** *** * ** * ** (33.4 bits) 0.8 ****** * ** ***** ** ** *** 0.6 ******** ** ******** * ****** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GCGTCACGTGGAGGGGGCGCTGGGAAGGG consensus G G GCC CC C CG CAA TG CC sequence G G G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr9:34665761-34666261 + 10 6.64e-15 CAGGGGCTG GGGTCACCTGGAGGGGGGGCTGAGAGGGG TCAGCGCAGC chr17:7242792-7243292 + 68 1.18e-12 AGAGGGCGGA GCGTCACGTGGCGGGTGCGCGAAGTAGGG CCGG chr10:31319255-31319755 - 72 2.11e-11 . GCGGCAGGGGCGGCGGGAGCCGCTAGGCG GAGAGAGACC chr19:37466977-37467477 - 55 2.67e-11 AGTCCCGCCC GGGTGAGCCGCGGGGGCCTCTGGGAAGCG TCGCCCCTGG chr6:87155291-87155791 - 8 3.90e-11 ACGTTCGGCG GGGTCACGTGCCGGGCGCGCTTGCACGGC GCCGAGC chr10:73252445-73252945 - 3 4.52e-11 GAAGTATAGG GCGGCAAGCGGAGGAGGCGTGGCGAGCGG AT chr12:123232802-12323330 - 67 2.68e-10 TGACA TCGGCAGCGGGAGCGGCGGCCAGGTAAGC GGCCACCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:34665761-34666261 6.6e-15 9_[+10]_62 chr17:7242792-7243292 1.2e-12 67_[+10]_4 chr10:31319255-31319755 2.1e-11 71_[-10] chr19:37466977-37467477 2.7e-11 54_[-10]_17 chr6:87155291-87155791 3.9e-11 7_[-10]_64 chr10:73252445-73252945 4.5e-11 2_[-10]_69 chr12:123232802-12323330 2.7e-10 66_[-10]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGKCASSBGSVGGGGGSGCBRVGARGGG width=29 seqs=7 chr9:34665761-34666261 ( 10) GGGTCACCTGGAGGGGGGGCTGAGAGGGG 1 chr17:7242792-7243292 ( 68) GCGTCACGTGGCGGGTGCGCGAAGTAGGG 1 chr10:31319255-31319755 ( 72) GCGGCAGGGGCGGCGGGAGCCGCTAGGCG 1 chr19:37466977-37467477 ( 55) GGGTGAGCCGCGGGGGCCTCTGGGAAGCG 1 chr6:87155291-87155791 ( 8) GGGTCACGTGCCGGGCGCGCTTGCACGGC 1 chr10:73252445-73252945 ( 3) GCGGCAAGCGGAGGAGGCGTGGCGAGCGG 1 chr12:123232802-12323330 ( 67) TCGGCAGCGGGAGCGGCGGCCAGGTAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 13.197 E= 1.6e+004 -945 -945 189 -91 -945 130 89 -945 -945 -945 211 -945 -945 -945 89 109 -945 189 -69 -945 189 -945 -945 -945 -91 89 89 -945 -945 89 130 -945 -945 31 31 67 -945 -945 211 -945 -945 89 130 -945 67 31 31 -945 -945 -945 211 -945 -945 31 163 -945 -91 -945 189 -945 -945 -69 163 -91 -945 31 163 -945 -91 130 31 -945 -945 -945 189 -91 -945 189 -945 -91 -945 31 31 67 9 -945 130 -91 9 31 89 -945 -945 -69 163 -91 141 -945 -945 9 67 -69 89 -945 -91 -69 163 -945 -945 31 163 -945 -945 31 163 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 7 E= 1.6e+004 0.000000 0.000000 0.857143 0.142857 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.428571 0.428571 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.285714 0.285714 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.428571 0.285714 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.142857 0.714286 0.142857 0.000000 0.285714 0.714286 0.000000 0.142857 0.571429 0.285714 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.857143 0.000000 0.142857 0.000000 0.285714 0.285714 0.428571 0.285714 0.000000 0.571429 0.142857 0.285714 0.285714 0.428571 0.000000 0.000000 0.142857 0.714286 0.142857 0.714286 0.000000 0.000000 0.285714 0.428571 0.142857 0.428571 0.000000 0.142857 0.142857 0.714286 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.285714 0.714286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGKCASSBGSVGGGGGSGCBRVGARGGG MEME-10 regular expression -------------------------------------------------------------------------------- G[CG]G[TG]CA[CG][GC][TCG]G[GC][ACG]G[GC]GG[GC][CG]GC[TCG][GA][GAC]G[AT][AG]G[GC][GC] -------------------------------------------------------------------------------- Time 4543.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:45416695-45417195 6.35e-02 100 chr15:67768516-67769016 1.23e-01 100 chr17:7242792-7243292 8.76e-07 67_[+10(1.18e-12)]_4 chr10:73252445-73252945 1.25e-05 2_[-10(4.52e-11)]_69 chr17:71176883-71177383 5.32e-03 [+9(2.26e-05)]_41_[+9(7.98e-07)]_31 chr6:87155291-87155791 4.39e-07 7_[-10(3.90e-11)]_40_[+5(5.73e-06)]_\ 8 chr17:78558328-78558828 9.95e-01 100 chr15:71747483-71747983 1.68e-02 40_[-3(5.49e-05)]_4_[-9(7.92e-06)]_\ 34 chr1:145740166-145740666 3.80e-01 64_[+9(7.92e-06)]_22 chr10:31319255-31319755 6.96e-11 13_[-5(6.67e-08)]_12_[+7(8.68e-06)]_\ 21_[-10(2.11e-11)] chr12:54054264-54054764 6.33e-01 74_[+3(5.49e-05)]_1_[-3(1.74e-05)]_\ 9 chr8:17674922-17675422 1.52e-03 31_[+1(2.70e-05)]_47 chr5:90830057-90830557 3.95e-01 100 chr1:228781039-228781539 9.40e-01 100 chr7:85591881-85592381 2.01e-01 34_[+9(1.26e-05)]_52 chr1:220918444-220918944 2.55e-01 100 chr19:36666543-36667043 1.84e-01 100 chr2:55419639-55420139 7.63e-06 56_[-5(6.39e-07)]_10_[-5(2.01e-05)]_\ 2 chr11:65711786-65712286 8.60e-03 21_[+6(7.35e-05)]_33 chr19:34218163-34218663 5.69e-01 100 chr4:53943614-53944114 8.76e-01 100 chr6:12816147-12816647 6.91e-02 44_[-1(6.35e-05)]_34 chr17:8681171-8681671 5.26e-02 10_[+3(5.49e-05)]_3_[+9(5.83e-06)]_\ 65 chr7:121314306-121314806 8.48e-01 100 chr17:48492614-48493114 2.74e-01 100 chr10:75508645-75509145 3.11e-02 28_[-3(5.49e-05)]_64 chr1:177340515-177341015 2.16e-02 24_[-3(7.52e-05)]_68 chr2:33589431-33589931 3.87e-01 61_[-3(7.52e-05)]_31 chr16:78184454-78184954 1.89e-02 3_[-9(1.78e-05)]_83 chr2:241316021-241316521 1.03e-01 71_[+10(6.26e-06)] chr15:36356853-36357353 8.56e-01 100 chr10:21975264-21975764 9.23e-02 82_[+9(2.64e-05)]_4 chr8:37637895-37638395 6.29e-01 100 chr12:53501169-53501669 3.18e-02 8_[+5(7.93e-05)]_76 chr21:38990057-38990557 6.43e-01 100 chr1:175470979-175471479 3.32e-01 100 chr2:144430764-144431264 9.04e-03 65_[+1(2.21e-06)]_13 chr1:53733857-53734357 2.11e-04 5_[-8(9.73e-09)]_73 chr2:160472690-160473190 6.83e-01 100 chr19:49766580-49767080 2.02e-02 8_[-5(1.23e-06)]_76 chr10:15796072-15796572 1.56e-01 43_[+3(5.49e-05)]_49 chr14:21511163-21511663 1.42e-01 73_[-2(3.85e-05)]_5 chr1:183026305-183026805 3.32e-01 100 chr15:57090408-57090908 2.05e-01 66_[-1(2.70e-05)]_12 chr17:45148395-45148895 1.13e-02 15_[+4(9.46e-05)]_11_[+5(1.23e-06)]_\ 29 chr17:48577453-48577953 6.29e-02 19_[+3(1.74e-05)]_2_[-3(5.49e-05)]_\ 63 chr22:42614698-42615198 4.40e-02 14_[+5(1.98e-06)]_70 chr10:22599848-22600348 4.72e-03 4_[-2(9.09e-06)]_10_[+3(7.52e-05)]_\ 16_[+7(6.60e-05)]_31 chr11:120346987-12034748 1.90e-07 17_[-8(1.71e-05)]_8_[-2(3.51e-11)]_\ 8_[-1(3.14e-06)]_1 chr1:150009544-150010044 1.53e-02 100 chr6:108676529-108677029 7.11e-02 53_[-9(2.64e-05)]_33 chr5:119270089-119270589 2.10e-02 8_[-9(2.98e-06)]_78 chr17:59829277-59829777 8.08e-01 100 chr7:93232045-93232545 4.03e-01 100 chr17:14622662-14623162 1.43e-01 100 chr2:159712298-159712798 1.47e-01 23_[+5(4.72e-06)]_61 chr8:80330504-80331004 3.23e-01 79_[-7(1.34e-05)]_12 chr5:34182252-34182752 3.69e-13 23_[+8(1.14e-12)]_2_[+8(1.14e-12)]_\ 31 chr6:28896944-28897444 9.25e-01 100 chr1:93554082-93554582 2.26e-02 64_[-7(7.06e-05)]_13_[+9(1.64e-05)] chr5:115701960-115702460 8.83e-03 56_[+1(6.13e-06)]_22 chr19:31332880-31333380 1.83e-11 26_[+8(1.14e-12)]_2_[+8(1.14e-12)]_\ 28 chr2:205280611-205281111 3.23e-03 16_[-1(5.50e-06)]_23_[+9(3.78e-06)]_\ 25 chr4:72444089-72444589 3.91e-01 100 chr16:22386875-22387375 1.28e-02 [-1(3.52e-06)]_26_[+7(7.06e-05)]_43 chr15:95556842-95557342 1.37e-01 7_[-8(8.42e-05)]_71 chr12:71627464-71627964 8.00e-03 20_[+1(1.69e-05)]_58 chr18:59053304-59053804 3.01e-01 100 chr6:124056833-124057333 2.38e-01 83_[-9(3.06e-05)]_3 chr20:45791582-45792082 1.57e-02 62_[-7(4.64e-05)]_1_[+5(1.07e-05)]_\ 12 chr9:34665761-34666261 1.03e-11 9_[+10(6.64e-15)]_19_[-5(3.11e-06)]_\ 12_[+7(2.62e-05)]_6 chr22:24727077-24727577 5.49e-02 70_[+9(4.18e-07)]_16 chr5:136729855-136730355 9.13e-02 100 chr6:110125287-110125787 3.68e-03 86_[+9(2.98e-06)] chr20:35875543-35876043 9.59e-01 100 chr16:30558083-30558583 7.24e-03 53_[-7(6.60e-05)]_38 chr20:35319232-35319732 2.86e-01 51_[-3(5.49e-05)]_41 chr1:232793881-232794381 4.49e-01 63_[+3(5.49e-05)]_29 chr10:33477330-33477830 2.28e-03 21_[+10(7.49e-05)]_18_\ [-9(2.66e-06)]_18 chr19:42032347-42032847 5.20e-01 100 chr9:13956057-13956557 1.49e-03 48_[-1(7.04e-07)]_30 chr15:65512833-65513333 1.38e-01 100 chr1:64514044-64514544 6.01e-01 100 chr19:30004327-30004827 2.66e-02 67_[+3(1.74e-05)]_25 chr3:71102127-71102627 4.19e-01 100 chr12:121016261-12101676 1.05e-01 100 chr1:221393943-221394443 4.39e-01 100 chr20:18430092-18430592 2.54e-03 69_[+1(1.05e-06)]_9 chr1:8621245-8621745 9.01e-01 100 chr5:74632122-74632622 2.53e-01 33_[+9(1.26e-05)]_53 chr17:30376601-30377101 3.86e-02 100 chr11:65083867-65084367 3.63e-03 10_[+10(3.52e-06)]_61 chr6:21748574-21749074 1.01e-01 67_[-8(6.28e-05)]_11 chrX:24146320-24146820 9.51e-01 100 chr12:82817323-82817823 4.17e-03 36_[-1(2.80e-06)]_42 chr12:57935783-57936283 5.02e-04 74_[-2(5.14e-08)]_4 chr8:37380757-37381257 2.34e-01 100 chr6:15956276-15956776 7.81e-02 18_[+9(2.64e-05)]_68 chr6:168024038-168024538 5.34e-03 29_[+9(1.78e-05)]_57 chr5:76585727-76586227 7.35e-01 100 chr12:76764168-76764668 2.29e-03 27_[+5(9.86e-06)]_27_[+2(1.78e-05)]_\ 8 chr1:150487047-150487547 9.46e-01 100 chr19:4769475-4769975 1.75e-01 100 chr6:168147152-168147652 6.86e-02 100 chr12:42325932-42326432 1.91e-02 47_[+5(6.91e-06)]_37 chr7:132485134-132485634 5.75e-01 100 chrX:23944238-23944738 7.66e-04 39_[-1(4.93e-06)]_39 chr6:124487969-124488469 1.62e-01 6_[+1(9.42e-05)]_72 chr10:89185660-89186160 7.24e-02 [-9(3.35e-06)]_86 chr19:4724432-4724932 8.04e-01 100 chr5:14443590-14444090 2.08e-01 49_[-3(5.49e-05)]_43 chr16:1826950-1827450 2.71e-02 42_[-6(3.19e-06)]_12 chr2:175805450-175805950 3.45e-01 100 chr17:46101230-46101730 9.23e-02 100 chr18:59455069-59455569 8.90e-01 100 chr10:33388262-33388762 2.41e-01 100 chr17:63600613-63601113 4.33e-02 84_[+5(7.58e-05)] chr19:10602507-10603007 4.92e-05 24_[-5(1.98e-06)]_6_[-10(9.81e-06)]_\ 25 chr1:195590630-195591130 4.31e-02 1_[+2(2.56e-05)]_77 chr2:132884654-132885154 1.25e-01 100 chr11:46948444-46948944 6.50e-02 53_[+1(1.03e-05)]_25 chr1:229221307-229221807 3.02e-01 100 chr4:169062732-169063232 3.36e-01 52_[-7(8.74e-05)]_39 chr10:118740022-11874052 8.57e-02 52_[+9(5.28e-05)]_34 chr6:26029196-26029696 6.19e-01 100 chr17:48728680-48729180 6.42e-06 1_[-2(5.33e-14)]_10_[-2(5.52e-08)]_\ 45 chr18:34117144-34117644 3.35e-01 100 chr5:160081443-160081943 2.63e-02 23_[+7(2.28e-05)]_15_[-3(5.49e-05)]_\ 45 chr5:14147168-14147668 3.69e-02 77_[+2(2.32e-05)]_1 chr1:184935851-184936351 4.75e-02 15_[+1(3.84e-05)]_41_[-7(3.44e-05)]_\ 13 chr14:96574793-96575293 1.82e-02 36_[-1(6.89e-05)]_14_[+9(1.51e-05)]_\ 14 chr2:19901694-19902194 3.40e-01 100 chr6:82877158-82877658 1.39e-02 64_[-2(1.37e-08)]_14 chr9:16953986-16954486 1.28e-04 45_[-1(1.73e-06)]_11_[-8(7.68e-07)] chr9:1034224-1034724 1.74e-03 65_[+1(1.86e-05)]_[-7(1.74e-05)]_4 chr15:69143709-69144209 8.95e-01 100 chr5:59317214-59317714 3.46e-01 100 chr1:58779923-58780423 7.76e-01 100 chr9:97845098-97845598 7.36e-03 33_[+9(4.72e-06)]_53 chr7:45111362-45111862 1.13e-02 42_[-10(1.22e-05)]_29 chr11:65095905-65096405 1.07e-01 70_[-3(1.74e-05)]_22 chr17:75456283-75456783 3.64e-01 100 chr18:395639-396139 1.47e-02 42_[-2(1.08e-06)]_36 chr17:71163483-71163983 9.00e-01 100 chr10:77305633-77306133 6.14e-01 47_[+3(5.49e-05)]_45 chr1:16122832-16123332 5.42e-01 18_[-10(6.91e-06)]_53 chr8:108689390-108689890 2.55e-01 63_[+9(7.16e-06)]_23 chr1:237166750-237167250 1.85e-03 43_[+1(3.14e-06)]_35 chr13:20567064-20567564 7.92e-02 36_[-5(1.49e-05)]_48 chr10:117375481-11737598 1.49e-03 4_[+10(2.16e-05)]_67 chr1:16164138-16164638 1.11e-04 22_[+1(3.14e-06)]_56 chr7:82156103-82156603 1.70e-02 100 chr5:34608783-34609283 4.40e-01 100 chr2:175167709-175168209 1.48e-02 33_[+2(6.33e-05)]_19_[-2(5.63e-07)]_\ 4 chr10:129605922-12960642 9.00e-01 100 chr6:131816086-131816586 8.05e-01 100 chr11:27013706-27014206 1.42e-01 100 chrX:48003650-48004150 6.84e-06 44_[-2(5.14e-08)]_34 chr1:28648534-28649034 1.21e-05 76_[-1(1.80e-08)]_2 chr14:76486210-76486710 3.68e-02 100 chr6:150418334-150418834 2.73e-03 28_[-1(1.96e-06)]_50 chr12:54359106-54359606 3.17e-04 52_[+2(1.43e-09)]_26 chr10:17059173-17059673 4.20e-01 100 chr20:33401276-33401776 9.20e-02 100 chr1:245067234-245067734 9.68e-02 35_[+8(8.40e-06)]_43 chrX:41333402-41333902 1.82e-01 100 chr18:11696354-11696854 1.17e-01 51_[+7(2.62e-05)]_40 chr8:11284172-11284672 1.59e-06 29_[+6(1.03e-12)]_25 chr7:157358401-157358901 2.71e-01 43_[-1(2.70e-05)]_35 chr12:82861944-82862444 5.21e-01 100 chr20:41476105-41476605 2.28e-01 13_[-9(6.75e-05)]_73 chr12:106074984-10607548 2.89e-01 100 chr1:225654695-225655195 6.12e-12 32_[+8(1.14e-12)]_46 chr12:65606308-65606808 5.48e-01 100 chr22:24026692-24027192 5.18e-01 100 chr1:61253333-61253833 2.97e-01 100 chr9:123678551-123679051 3.15e-01 2_[-1(4.19e-05)]_76 chr10:74833305-74833805 3.90e-01 100 chr3:171790717-171791217 9.18e-01 100 chr4:20294406-20294906 2.75e-02 38_[-1(1.54e-05)]_40 chr6:149233311-149233811 7.47e-01 100 chr22:40711453-40711953 2.33e-02 8_[+1(5.50e-06)]_70 chr21:39313554-39314054 6.92e-04 72_[+2(3.36e-07)]_6 chr6:137853605-137854105 3.61e-02 23_[-1(2.80e-06)]_55 chr11:128061356-12806185 9.82e-02 100 chr1:26620565-26621065 2.31e-01 100 chr1:87706721-87707221 9.23e-01 100 chr11:17277202-17277702 1.12e-03 20_[-1(3.23e-05)]_14_[+7(1.34e-05)]_\ 35 chr3:49021852-49022352 1.94e-03 16_[+10(8.97e-06)]_55 chr1:183471834-183472334 5.69e-01 100 chr7:26534935-26535435 7.35e-01 73_[+3(5.49e-05)]_19 chr20:46085116-46085616 6.22e-03 20_[+9(3.52e-05)]_14_[+1(2.46e-05)]_\ 30 chr3:168975033-168975533 8.04e-01 100 chr11:32891481-32891981 2.71e-01 100 chr5:77995836-77996336 1.16e-01 11_[+1(6.35e-05)]_67 chr4:41709858-41710358 3.75e-01 100 chr6:4320842-4321342 5.38e-03 10_[-1(2.80e-06)]_68 chr8:71496032-71496532 2.07e-01 100 chr20:32109320-32109820 6.09e-01 100 chr5:14156547-14157047 2.60e-02 48_[-9(4.22e-06)]_38 chr20:45971970-45972470 6.28e-01 100 chr7:98476702-98477202 6.44e-01 100 chr10:35890243-35890743 6.83e-03 8_[-3(7.52e-05)]_84 chr9:97922035-97922535 4.93e-08 14_[+6(1.41e-13)]_40 chr12:12266902-12267402 4.41e-01 100 chr1:88145634-88146134 3.18e-04 62_[-3(7.52e-05)]_21_[+7(2.28e-05)] chr7:70704779-70705279 8.96e-01 100 chr12:124914567-12491506 5.79e-01 100 chr7:117123486-117123986 8.77e-02 91_[+3(1.74e-05)]_1 chr5:160008691-160009191 9.66e-04 3_[+1(2.63e-07)]_75 chr2:55843177-55843677 3.37e-03 100 chr3:16482936-16483436 1.41e-03 49_[-9(2.31e-07)]_37 chr20:51934262-51934762 3.52e-01 100 chr10:35195678-35196178 4.16e-01 100 chr22:27212611-27213111 3.99e-01 100 chr4:111883491-111883991 1.96e-03 3_[-2(1.27e-05)]_75 chr14:50961870-50962370 4.42e-02 43_[+7(2.28e-05)]_48 chr15:81966569-81967069 2.01e-03 46_[+1(2.25e-05)]_10_[-9(1.42e-06)]_\ 8 chr19:41363765-41364265 6.44e-02 100 chr5:69521161-69521661 1.16e-01 63_[+9(8.50e-05)]_23 chr10:72098726-72099226 6.95e-01 100 chr14:74140317-74140817 6.79e-01 100 chr1:26233998-26234498 9.41e-04 12_[+2(1.09e-07)]_66 chr11:62841252-62841752 2.67e-03 65_[+1(3.52e-06)]_13 chr5:136420550-136421050 3.54e-05 1_[+9(2.37e-08)]_16_[-2(5.14e-08)]_\ 47 chr19:1383562-1384062 4.75e-01 100 chr6:47722199-47722699 2.57e-01 73_[+3(5.49e-05)]_19 chr3:142578556-142579056 9.43e-05 25_[+10(2.38e-07)]_4_\ [-10(7.78e-05)]_13 chr16:12120440-12120940 4.38e-04 21_[-1(7.04e-07)]_57 chr6:28141382-28141882 2.62e-02 27_[+7(2.62e-05)]_64 chr12:6470413-6470913 2.43e-03 16_[+5(9.86e-06)]_14_\ [-10(4.14e-05)]_25 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chr17:3890044-3890544 3.05e-01 100 chr6:166006002-166006502 3.55e-02 64_[+3(7.52e-05)]_3_[+7(4.64e-05)]_\ 16 chr6:31958737-31959237 1.97e-02 64_[-5(1.76e-06)]_20 chr10:22912203-22912703 7.92e-01 100 chrX:129404443-129404943 8.21e-01 100 chr1:42766664-42767164 1.41e-02 39_[+10(6.91e-06)]_32 chr13:44218409-44218909 2.93e-01 12_[-1(1.39e-05)]_66 chr2:88330150-88330650 6.65e-02 55_[-1(4.96e-05)]_23 chr17:70661784-70662284 8.26e-03 74_[+1(5.50e-06)]_4 chr6:47456561-47457061 2.77e-02 64_[-1(3.84e-05)]_14 chr3:101940581-101941081 1.02e-01 100 chr14:56585403-56585903 2.73e-01 100 chr8:42843050-42843550 1.47e-03 7_[+9(7.16e-06)]_79 chr1:220119012-220119512 3.05e-01 100 chr10:10989648-10990148 2.19e-03 52_[-9(9.13e-07)]_34 chr10:112793399-11279389 4.05e-01 1_[+3(5.49e-05)]_91 chr5:32367213-32367713 2.95e-12 28_[+8(1.14e-12)]_3_[+8(1.14e-12)]_\ 25 chr5:119328678-119329178 4.89e-01 100 chr8:12619018-12619518 2.24e-01 100 chr1:47690398-47690898 9.45e-01 100 chr1:120176243-120176743 9.09e-03 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16_[+7(8.74e-05)]_30_[+5(1.98e-06)]_\ 29 chr6:75524498-75524998 3.30e-04 76_[-9(6.42e-08)]_10 chr12:116718810-11671931 6.94e-02 8_[+7(6.60e-05)]_83 chr2:56474793-56475293 8.70e-01 55_[+7(8.74e-05)]_36 chr12:53321347-53321847 1.24e-01 100 chr6:52482933-52483433 6.62e-01 100 chr19:38374195-38374695 8.01e-03 18_[-6(7.45e-06)]_36 chr1:167658587-167659087 1.65e-07 19_[-8(1.21e-07)]_59 chr4:118327845-118328345 9.76e-02 100 chr13:37046971-37047471 7.81e-02 54_[+1(5.86e-05)]_24 chr10:15409299-15409799 8.61e-10 59_[-4(2.83e-17)]_12 chr18:50629059-50629559 1.36e-01 54_[-9(3.78e-06)]_32 chr21:33136808-33137308 8.96e-02 100 chr6:21264348-21264848 2.14e-01 82_[+3(1.74e-05)]_10 chr6:34757300-34757800 5.03e-02 17_[-6(4.75e-05)]_37 chr19:17606257-17606757 1.80e-04 17_[-10(1.30e-06)]_21_\ [-10(4.73e-07)]_4 chr5:175378374-175378874 4.79e-01 67_[+3(7.52e-05)]_25 chr5:14168879-14169379 1.73e-01 100 chr8:17766221-17766721 4.84e-02 47_[-7(2.28e-05)]_44 chr10:50605400-50605900 1.07e-01 100 chr1:234723875-234724375 2.04e-07 31_[+2(3.83e-13)]_8_[+2(1.91e-06)]_\ 17 chr1:52955586-52956086 4.20e-01 100 chr5:124599574-124600074 1.58e-02 5_[+9(7.92e-06)]_81 chr2:156781585-156782085 4.47e-10 63_[-4(7.33e-17)]_8 chr19:37078198-37078698 2.70e-02 100 chr10:72320662-72321162 1.87e-02 58_[-7(1.74e-05)]_33 chr6:4109404-4109904 3.07e-01 88_[-7(7.06e-05)]_3 chr3:31532209-31532709 5.21e-04 13_[+10(9.05e-05)]_25_\ [-5(3.47e-06)]_17 chr12:54033463-54033963 5.88e-01 100 chr14:36835061-36835561 2.97e-01 63_[-2(7.47e-05)]_15 chr6:2985832-2986332 5.82e-01 100 chr5:115842914-115843414 2.48e-01 51_[-7(2.28e-05)]_40 chr5:83265177-83265677 1.50e-03 33_[-1(1.39e-05)]_45 chr8:25998503-25999003 4.46e-02 13_[+9(1.93e-05)]_73 chr1:45499987-45500487 7.40e-01 100 chr17:70661303-70661803 2.18e-01 65_[-7(9.61e-05)]_26 chr1:86774456-86774956 7.23e-01 100 chr12:50195792-50196292 1.50e-01 74_[-3(7.52e-05)]_18 chr1:85274843-85275343 5.51e-01 100 chr5:124735004-124735504 5.43e-01 100 chr9:128656641-128657141 3.66e-01 100 chr7:116218157-116218657 4.94e-01 100 chr4:70778943-70779443 3.96e-01 38_[+7(4.64e-05)]_53 chr7:100874695-100875195 2.27e-04 2_[-2(9.50e-05)]_9_[-5(6.30e-06)]_\ 51 chr19:51571000-51571500 2.09e-01 100 chr21:34857057-34857557 3.30e-03 16_[+9(1.64e-05)]_39_[+7(2.62e-05)]_\ 22 chr1:214439362-214439862 7.55e-01 100 chr12:4538394-4538894 2.62e-01 100 chr1:40979693-40980193 2.86e-02 18_[-5(1.07e-05)]_66 chr19:36215175-36215675 2.85e-01 28_[+2(2.56e-05)]_8_[+2(2.03e-05)]_\ 20 chr1:110338871-110339371 2.79e-01 100 chr5:36642009-36642509 4.70e-01 100 chr17:48407085-48407585 3.61e-05 41_[+8(6.27e-09)]_37 chr7:133492163-133492663 1.19e-02 71_[-1(1.26e-05)]_7 chr10:61898228-61898728 4.25e-05 5_[-7(1.34e-05)]_34_[-3(7.52e-05)]_\ [+9(2.64e-05)]_30 chr1:175023152-175023652 1.25e-01 13_[+10(2.46e-05)]_58 chr10:75379153-75379653 9.97e-01 100 chr19:28425304-28425804 1.32e-01 25_[-9(5.28e-05)]_61 chr19:39996916-39997416 2.28e-02 1_[+7(8.68e-06)]_90 chr1:223518508-223519008 4.08e-10 31_[-4(1.23e-16)]_40 chr6:151451971-151452471 4.14e-06 2_[-6(5.55e-06)]_10_[-10(1.38e-05)]_\ 13 chr19:54115417-54115917 2.24e-01 100 chr8:37302594-37303094 2.94e-01 100 chr12:123232802-12323330 3.77e-05 66_[-10(2.68e-10)]_5 chr6:43321930-43322430 2.59e-03 7_[+3(7.52e-05)]_23_[+1(4.42e-06)]_\ 40 chr14:49620614-49621114 1.60e-02 [-7(4.01e-06)]_6_[+5(9.80e-05)]_69 chr5:38783020-38783520 2.53e-03 18_[-9(8.71e-06)]_68 chr1:76294417-76294917 2.95e-02 48_[+3(7.52e-05)]_44 chr17:61335991-61336491 2.14e-03 4_[-1(4.93e-06)]_2_[+9(1.86e-07)]_\ 58 chr19:5903610-5904110 1.42e-03 3_[+5(5.68e-05)]_21_[+2(6.88e-05)]_\ 11_[+5(1.87e-07)]_11 chr3:181328942-181329442 1.82e-01 100 chr6:42929057-42929557 9.70e-01 100 chr16:15590841-15591341 5.68e-04 51_[-9(1.46e-07)]_35 chr5:68240106-68240606 6.89e-03 10_[+9(6.49e-06)]_19_[-7(4.64e-05)]_\ 48 chr3:159765602-159766102 4.82e-01 100 chr5:59303215-59303715 8.14e-14 1_[+9(3.78e-06)]_31_[+4(4.01e-18)]_\ 25 chr3:129399378-129399878 7.07e-01 100 chr6:112956680-112957180 4.37e-01 100 chr10:77287712-77288212 2.41e-03 26_[+8(9.85e-05)]_52 chr6:82260135-82260635 2.11e-01 33_[-1(1.26e-05)]_45 chr16:25049578-25050078 1.03e-02 77_[-1(2.25e-05)]_1 chr7:99504963-99505463 9.07e-02 56_[-7(4.64e-05)]_35 chr1:66542681-66543181 1.13e-03 10_[-1(3.95e-06)]_20_[-8(9.85e-05)]_\ 26 chr16:29805344-29805844 2.39e-04 43_[+7(3.44e-05)]_28_[-5(1.38e-06)]_\ 4 chr1:174999241-174999741 2.42e-01 100 chr15:74099994-74100494 3.08e-17 22_[+5(5.54e-07)]_11_[-6(7.73e-22)]_\ 5 chr10:17228249-17228749 6.81e-03 19_[-7(4.64e-05)]_28_\ [+10(5.51e-05)]_15 chr16:30610193-30610693 4.64e-01 100 chr8:11863798-11864298 3.79e-03 8_[-7(1.34e-05)]_10_[+1(8.42e-06)]_\ 51 chr22:24310921-24311421 4.13e-02 33_[-1(8.07e-05)]_45 chr19:16197636-16198136 1.17e-05 45_[-7(4.01e-06)]_46 chr2:47176421-47176921 3.19e-02 27_[+7(3.44e-05)]_64 chr19:43596180-43596680 7.53e-01 67_[+10(7.49e-05)]_4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kali ********************************************************************************