# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/MYNN.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/MYNN.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/MYNN.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/MYNN.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:58 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/MYNN.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:59 PDT 2018) # host: kali # when: Thu May 10 17:17:04 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.245 C 0.256 G 0.255 T 0.244 MOTIF RCTYTTA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RCTYTTA TAARAGY 255 31 2.9e-057 9.6e-053 # ACTTTTA TAAAAGT 114 7 1.3e-028 4.3e-024 # ACTCTTA TAAGAGT 59 7 3.7e-012 1.2e-007 # GCTTTTA TAAAAGC 71 13 8.9e-012 2.9e-007 # GCTCTTA TAAGAGC 34 6 3.0e-006 9.9e-002 letter-probability matrix: alength= 4 w= 7 nsites= 288 E= 9.6e-053 0.628472 0.000000 0.371528 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTTGCYA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GTTGCYA TRGCAAC 131 12 1.2e-029 3.9e-025 # GTTGCCA TGGCAAC 86 5 1.1e-021 3.4e-017 # GTTGCTA TAGCAAC 56 7 2.4e-011 7.8e-007 letter-probability matrix: alength= 4 w= 7 nsites= 167 E= 3.9e-025 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.592814 0.000000 0.407186 1.000000 0.000000 0.000000 0.000000 MOTIF GTYWCCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GTYWCCA TGGWRAC 104 27 2.4e-013 7.5e-009 # GTTTCCA TGGAAAC 40 11 2.0e-005 6.3e-001 # GTCTCCA TGGAGAC 29 6 4.7e-005 1.5e+000 # GTCACCA TGGTGAC 29 7 1.3e-004 4.1e+000 # GTTACCA TGGTAAC 25 5 1.4e-004 4.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 132 E= 7.5e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.484848 0.000000 0.515152 0.431818 0.000000 0.000000 0.568182 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAWAATA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAWAATA TATTWTG 67 10 2.0e-012 6.4e-008 # CAAAATA TATTTTG 55 8 1.9e-010 5.9e-006 # CATAATA TATTATG 13 2 3.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 71 E= 6.4e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.816901 0.000000 0.000000 0.183099 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGCRAC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GGCRAC GTYGCC 115 39 2.2e-011 6.7e-007 # GGCAAC GTTGCC 74 21 6.0e-009 1.9e-004 # GGCGAC GTCGCC 58 18 1.2e-006 3.6e-002 letter-probability matrix: alength= 4 w= 6 nsites= 151 E= 6.7e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.582781 0.000000 0.417219 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCTSCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCTSCC GGSAGG 162 90 2.1e-007 6.5e-003 # CCTCCC GGGAGG 100 50 8.2e-006 2.5e-001 # CCTGCC GGCAGG 78 48 3.1e-003 9.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 192 E= 6.5e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.572917 0.427083 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 36.81 seconds