# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF9.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF9.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF9.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF9.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:58 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF9.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:59 PDT 2018)
#        host: kali
#        when: Thu May 10 17:14:16 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.158 C 0.345 G 0.340 T 0.157


MOTIF CMCGCCCH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CMCGCCCH   DGGGCGKG        444         73   3.1e-112   8.5e-108
#         CACGCCCC   GGGGCGTG        203         13   2.7e-053   7.3e-049
#         CCCGCCCC   GGGGCGGG        155         26   2.1e-027   5.9e-023
#         CACGCCCA   TGGGCGTG         98          6   1.7e-024   4.8e-020
#         CCCGCCCA   TGGGCGGG         78         19   1.2e-010   3.3e-006
#         CACGCCCT   AGGGCGTG         46          8   3.7e-008   1.0e-003
#         CCCGCCCT   AGGGCGGG         25          7   9.2e-004   2.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 694 E= 8.5e-108
0.000000 1.000000 0.000000 0.000000
0.600865 0.399135 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.302594 0.586455 0.000000 0.110951


MOTIF CACACCCM DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACACCCM   KGGGTGTG        108         28   7.0e-014   1.9e-009
#         CACACCCA   TGGGTGTG         57         12   7.7e-009   2.1e-004
#         CACACCCC   GGGGTGTG         56         16   5.9e-007   1.6e-002

letter-probability matrix: alength= 4 w= 8 nsites= 144 E= 1.9e-009
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.562500 0.437500 0.000000 0.000000


MOTIF AGGCGYG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGGCGYG    CRCGCCT         91         29   1.0e-009   2.8e-005
#          AGGCGTG    CACGCCT         46         12   2.5e-006   6.6e-002
#          AGGCGCG    CGCGCCT         46         18   2.2e-004   5.8e+000

letter-probability matrix: alength= 4 w= 7 nsites= 95 E= 2.8e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.494737 0.000000 0.505263
0.000000 0.000000 1.000000 0.000000


MOTIF CACGTGAY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGAY   RTCACGTG         26          0   1.1e-008   3.0e-004
#         CACGTGAC   GTCACGTG         25          0   2.3e-008   6.1e-004
#         CACGTGAT   ATCACGTG          7          0   7.7e-003   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 3.0e-004
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.805556 0.000000 0.194444


MOTIF AYTTCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AYTTCC     GGAART         70         24   4.2e-007   1.1e-002
#           ACTTCC     GGAAGT         49         20   2.2e-004   5.8e+000
#           ATTTCC     GGAAAT         25          6   3.8e-004   1.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 79 E= 1.1e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.670886 0.000000 0.329114
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 30.11 seconds