# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF8.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF8.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF8.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF8.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:04 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF8.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:06 PST 2017)
#        host: kali
#        when: Mon Dec 18 16:12:34 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.177 C 0.325 G 0.319 T 0.180


MOTIF CMMCGCCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CMMCGCCC   GGGCGKKG        204         39   1.2e-034   3.7e-030
#         CCCCGCCC   GGGCGGGG        126         19   3.3e-023   1.0e-018
#         CCACGCCC   GGGCGTGG         71         13   8.9e-012   2.7e-007
#         CACCGCCC   GGGCGGTG         30          8   1.9e-004   5.8e+000
#         CAACGCCC   GGGCGTTG         12          0   2.3e-004   7.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 277 E= 3.7e-030
0.000000 1.000000 0.000000 0.000000
0.148014 0.851986 0.000000 0.000000
0.382671 0.617329 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TTCCGB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTCCGB     VCGGAA        169         67   5.4e-014   1.6e-009
#           TTCCGG     CCGGAA         93         23   1.9e-012   5.7e-008
#           TTCCGC     GCGGAA         70         35   2.3e-004   6.9e+000
#           TTCCGT     ACGGAA         33         11   5.1e-004   1.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 219 E= 1.6e-009
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.360731 0.470320 0.168950


MOTIF CTCCDCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CTCCDCC    GGHGGAG        172         76   3.9e-012   1.1e-007
#          CTCCGCC    GGCGGAG         83         22   1.5e-010   4.4e-006
#          CTCCTCC    GGAGGAG         66         36   1.3e-003   3.7e+001
#          CTCCACC    GGTGGAG         43         23   7.8e-003   2.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 223 E= 1.1e-007
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.224215 0.000000 0.434978 0.340807
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAASTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AAASTA     TASTTT         31          2   4.6e-008   1.3e-003
#           AAAGTA     TACTTT         19          1   1.8e-005   5.1e-001
#           AAACTA     TAGTTT         12          1   1.6e-003   4.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 31 E= 1.3e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.387097 0.612903 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CASGTGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CASGTGA    TCACSTG         40          6   9.5e-008   2.7e-003
#          CACGTGA    TCACGTG         22          2   1.5e-005   4.4e-001
#          CAGGTGA    TCACCTG         20          4   7.0e-004   2.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 56 E= 2.7e-003
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.553571 0.446429 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 28.76 seconds