******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:75023444-75023944 1.0000 100 chr18:31206871-31207371 1.0000 100 chr16:12120420-12120920 1.0000 100 chr10:51699443-51699943 1.0000 100 chr16:2267850-2268350 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chr19:3022683-3023183 1.0000 100 chr19:35819850-35820350 1.0000 100 chr1:241998479-241998979 1.0000 100 chr19:40420970-40421470 1.0000 100 chr12:121888502-12188900 1.0000 100 chr19:17337103-17337603 1.0000 100 chr1:32702931-32703431 1.0000 100 chr19:35758156-35758656 1.0000 100 chr19:17334709-17335209 1.0000 100 chr19:35154633-35155133 1.0000 100 chr1:3403675-3404175 1.0000 100 chr19:40444347-40444847 1.0000 100 chrX:73944014-73944514 1.0000 100 chr19:35947347-35947847 1.0000 100 chr1:25998131-25998631 1.0000 100 chr8:25458843-25459343 1.0000 100 chr6:82260149-82260649 1.0000 100 chr1:155244573-155245073 1.0000 100 chr19:38975245-38975745 1.0000 100 chr15:75347346-75347846 1.0000 100 chr5:37371034-37371534 1.0000 100 chr1:156572299-156572799 1.0000 100 chr17:41689236-41689736 1.0000 100 chr19:18571485-18571985 1.0000 100 chr12:12266963-12267463 1.0000 100 chr17:40140132-40140632 1.0000 100 chr6:3251400-3251900 1.0000 100 chr9:136727970-136728470 1.0000 100 chr19:40690666-40691166 1.0000 100 chr19:55643332-55643832 1.0000 100 chr15:65869086-65869586 1.0000 100 chr2:109213954-109214454 1.0000 100 chr19:35643428-35643928 1.0000 100 chr1:28581593-28582093 1.0000 100 chr5:40835046-40835546 1.0000 100 chr16:89917742-89918242 1.0000 100 chr19:40603618-40604118 1.0000 100 chr19:4247411-4247911 1.0000 100 chr17:59619583-59620083 1.0000 100 chr1:228458437-228458937 1.0000 100 chr8:37302629-37303129 1.0000 100 chr20:47501594-47502094 1.0000 100 chr19:56538300-56538800 1.0000 100 chr20:45972085-45972585 1.0000 100 chr1:26620591-26621091 1.0000 100 chr14:64387693-64388193 1.0000 100 chr5:150449690-150450190 1.0000 100 chr1:224615783-224616283 1.0000 100 chr1:27321867-27322367 1.0000 100 chr6:56844064-56844564 1.0000 100 chr19:38336532-38337032 1.0000 100 chr20:1118284-1118784 1.0000 100 chr10:101830486-10183098 1.0000 100 chr17:80415106-80415606 1.0000 100 chr1:218285015-218285515 1.0000 100 chr6:31547279-31547779 1.0000 100 chr3:4986763-4987263 1.0000 100 chr17:7836717-7837217 1.0000 100 chr10:50067633-50068133 1.0000 100 chr1:159924365-159924865 1.0000 100 chr22:41468755-41469255 1.0000 100 chr3:194134802-194135302 1.0000 100 chr19:39410128-39410628 1.0000 100 chr19:44259581-44260081 1.0000 100 chr7:135232679-135233179 1.0000 100 chr2:197499757-197500257 1.0000 100 chr3:9731347-9731847 1.0000 100 chr5:75511623-75512123 1.0000 100 chr5:124740939-124741439 1.0000 100 chr2:241881327-241881827 1.0000 100 chr16:30482289-30482789 1.0000 100 chrX:48574031-48574531 1.0000 100 chr19:1652600-1653100 1.0000 100 chr12:49296438-49296938 1.0000 100 chr15:67254483-67254983 1.0000 100 chr8:24954991-24955491 1.0000 100 chr21:46635665-46636165 1.0000 100 chr1:40257846-40258346 1.0000 100 chr19:41310145-41310645 1.0000 100 chr11:59557318-59557818 1.0000 100 chr12:124914528-12491502 1.0000 100 chr17:42998041-42998541 1.0000 100 chr19:47778265-47778765 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.192 C 0.308 G 0.308 T 0.192 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.196 C 0.304 G 0.304 T 0.196 ******************************************************************************** ******************************************************************************** MOTIF ACACACACACACACACACACACACACACACA MEME-1 width = 31 sites = 36 llr = 1076 E-value = 5.8e-259 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8:a19:919:919:a19:91a:819:819:9 pos.-specific C :9:9:8:9:8:919:818:8:81818:8:8: probability G 1::::1::::1::::1:11::1111111:11 matrix T 11:::11:12:::1::11:::1:::2:::1: bits 2.4 * * 2.1 * * * 1.9 * * * * * * * 1.6 * * * * * * * * * * * * * Relative 1.4 *** * * * * * * * * * * * * * * Entropy 1.2 ***** ********* * * * * * * * * (43.1 bits) 0.9 ***** ***************** ***** * 0.7 ******************************* 0.5 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel ACACACACACACACACACACACACACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr2:241881327-241881827 - 69 8.30e-20 C ACACACACACACACACACACACACACACACA CGCTGGGCCA chr19:4247411-4247911 - 3 8.30e-20 ACACACACAC ACACACACACACACACACACACACACACACA CA chr17:40140132-40140632 + 44 8.30e-20 acaccccaac acacacacacacacacacacacacacacaca cacacacaca chr19:35947347-35947847 - 52 8.30e-20 ACACACACAC ACACACACACACACACACACACACACACACA CGAACAGTGC chr19:35819850-35820350 + 8 8.30e-20 ccaatgt acacacacacacacacacacacacacacaca cacacacaca chr19:39320109-39320609 + 1 8.30e-20 . acacacacacacacacacacacacacacaca caAATGGACA chr12:49187816-49188316 + 62 8.30e-20 CGTCCcacag acacacacacacacacacacacacacacaca cacacTTC chr19:40569728-40570228 + 10 8.30e-20 TGCCCCTCc acacacacacacacacacacacacacacaca cacacagaca chr3:168096018-168096518 - 33 8.30e-20 GAGAACTGGA ACACACACACACACACACACACACACACACA CGTGTTCACC chr17:73310517-73311017 + 28 8.30e-20 TCCCCCAGTc acacacacacacacacacacacacacacaca cacacacaca chr17:50169207-50169707 + 8 8.30e-20 TGAGGAT acacacacacacacacacacacacacacaca cCCCTGAAGT chr22:35840367-35840867 - 60 2.01e-18 CCTCCCCCCT ACACACACACACACACACACACACACGCACA CACGCACACA chr1:100351741-100352241 - 34 4.24e-18 GCGCGCGCGC GCACACACACACACACACACACACACACACA CTCGTAAAAA chr5:93582517-93583017 - 56 1.94e-17 TCGTCTATGG TCACACACACACACACATACACACACACACA CTTACGCTCA chr7:100167775-100168275 + 31 4.44e-17 agagagagag acacacacacacacacacacacacacagaga aacagagaga chr15:40092219-40092719 + 26 5.36e-17 acacgcacac acacagactcacacacacacacacacacaca cCCTTGTGCG chr1:228458437-228458937 - 18 1.78e-16 GCGCGCGCGC GCACACACACACACACACACACACACACACG GCTCAGATTC chr2:166375957-166376457 - 63 8.51e-16 GCTGGAC ACACACACACACACACTCAAACACACACACG CCCCACCCAA chr10:101830486-10183098 + 1 1.04e-15 . acacacacacacacacacacacacGCACGCA GGCCTGGGGC chr9:135967565-135968065 - 10 5.34e-15 GCGCGCGCAC ACACACACACACACACACACACGCCTGCACA CTCACCCCC chrX:107672910-107673410 - 24 2.49e-14 GGTGCACACC ACACACACACACACACACGCACGCACGCACG CACGCACACA chr3:194134802-194135302 + 39 4.02e-14 GCGCGCGcac acacactcactcacacacgcacgcacacaca caTCCTCCCG chr19:33274042-33274542 - 70 1.51e-13 . ACACACACATGCACACACAGACAGACACAGA CTCACACAGA chr19:36916390-36916890 - 46 5.67e-13 TCGTGCCGTC ACACTCACACACACAACCACACACCCACACT AACTCCCATC chr11:120346987-12034748 - 70 1.15e-12 . ACACACACACACACACAGACAGAGAGAGAGA GAGAGAGAGA chr16:88882215-88882715 - 1 1.57e-12 ACGCCCACGC ACACAGCCACACCCACACACAGCCATACACA chr12:52203042-52203542 - 62 1.83e-12 CCCCAGCC ACACACTCACACACACACGCACATGTTCACA CACAGAGGAG chr19:38224281-38224781 + 56 2.53e-11 acacaccttc gcacggactcacacagccacacgcacacaca cTGCAATACT chr5:34182251-34182751 + 22 3.08e-11 tgagaccATC ACaaataaataaataaataaataaataaata aataaataaa chr16:12120420-12120920 - 36 4.85e-11 GTCCCCAGGG ACCCAAACATAAACACAGACACACAGCCAGA TGACGCACAG chr19:40567075-40567575 + 26 1.10e-10 tgtctcaaaa ataaataaataaataaataaataaataaata aataaataaa chr5:160008634-160009134 + 20 1.10e-10 tgtctcaaaa ataaataaataaataaataaataaataaata aataaataaa chr19:35881941-35882441 + 34 1.10e-10 aaaataaaaa ataaataaataaataaataaataaataaata aataaaAtcc chr22:42648698-42649198 + 42 1.40e-10 ACGCTCGCTC ACACACTCACACTCAGCGGCACACACGCTCA CAACCACGGG chr1:31387499-31387999 + 26 1.35e-09 GATGACCTCA CCATCCACACCCCCAGACACATCCACACAGA TGACCTCACC chr19:36604650-36605150 + 70 5.31e-09 CCCGGGACCA TCACAGGCGCGCCcactcacaccaccacaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:241881327-241881827 8.3e-20 68_[-1]_1 chr19:4247411-4247911 8.3e-20 2_[-1]_67 chr17:40140132-40140632 8.3e-20 43_[+1]_26 chr19:35947347-35947847 8.3e-20 51_[-1]_18 chr19:35819850-35820350 8.3e-20 7_[+1]_62 chr19:39320109-39320609 8.3e-20 [+1]_69 chr12:49187816-49188316 8.3e-20 61_[+1]_8 chr19:40569728-40570228 8.3e-20 9_[+1]_60 chr3:168096018-168096518 8.3e-20 32_[-1]_37 chr17:73310517-73311017 8.3e-20 27_[+1]_42 chr17:50169207-50169707 8.3e-20 7_[+1]_62 chr22:35840367-35840867 2e-18 59_[-1]_10 chr1:100351741-100352241 4.2e-18 33_[-1]_36 chr5:93582517-93583017 1.9e-17 55_[-1]_14 chr7:100167775-100168275 4.4e-17 30_[+1]_39 chr15:40092219-40092719 5.4e-17 25_[+1]_44 chr1:228458437-228458937 1.8e-16 17_[-1]_52 chr2:166375957-166376457 8.5e-16 62_[-1]_7 chr10:101830486-10183098 1e-15 [+1]_69 chr9:135967565-135968065 5.3e-15 9_[-1]_60 chrX:107672910-107673410 2.5e-14 23_[-1]_46 chr3:194134802-194135302 4e-14 38_[+1]_31 chr19:33274042-33274542 1.5e-13 69_[-1] chr19:36916390-36916890 5.7e-13 45_[-1]_24 chr11:120346987-12034748 1.2e-12 69_[-1] chr16:88882215-88882715 1.6e-12 [-1]_69 chr12:52203042-52203542 1.8e-12 61_[-1]_8 chr19:38224281-38224781 2.5e-11 55_[+1]_14 chr5:34182251-34182751 3.1e-11 21_[+1]_48 chr16:12120420-12120920 4.9e-11 35_[-1]_34 chr19:40567075-40567575 1.1e-10 25_[+1]_44 chr5:160008634-160009134 1.1e-10 19_[+1]_50 chr19:35881941-35882441 1.1e-10 33_[+1]_36 chr22:42648698-42649198 1.4e-10 41_[+1]_28 chr1:31387499-31387999 1.3e-09 25_[+1]_44 chr19:36604650-36605150 5.3e-09 69_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACACACACACACACACACACACACACA width=31 seqs=36 chr2:241881327-241881827 ( 69) ACACACACACACACACACACACACACACACA 1 chr19:4247411-4247911 ( 3) ACACACACACACACACACACACACACACACA 1 chr17:40140132-40140632 ( 44) ACACACACACACACACACACACACACACACA 1 chr19:35947347-35947847 ( 52) ACACACACACACACACACACACACACACACA 1 chr19:35819850-35820350 ( 8) ACACACACACACACACACACACACACACACA 1 chr19:39320109-39320609 ( 1) ACACACACACACACACACACACACACACACA 1 chr12:49187816-49188316 ( 62) ACACACACACACACACACACACACACACACA 1 chr19:40569728-40570228 ( 10) ACACACACACACACACACACACACACACACA 1 chr3:168096018-168096518 ( 33) ACACACACACACACACACACACACACACACA 1 chr17:73310517-73311017 ( 28) ACACACACACACACACACACACACACACACA 1 chr17:50169207-50169707 ( 8) ACACACACACACACACACACACACACACACA 1 chr22:35840367-35840867 ( 60) ACACACACACACACACACACACACACGCACA 1 chr1:100351741-100352241 ( 34) GCACACACACACACACACACACACACACACA 1 chr5:93582517-93583017 ( 56) TCACACACACACACACATACACACACACACA 1 chr7:100167775-100168275 ( 31) ACACACACACACACACACACACACACAGAGA 1 chr15:40092219-40092719 ( 26) ACACAGACTCACACACACACACACACACACA 1 chr1:228458437-228458937 ( 18) GCACACACACACACACACACACACACACACG 1 chr2:166375957-166376457 ( 63) ACACACACACACACACTCAAACACACACACG 1 chr10:101830486-10183098 ( 1) ACACACACACACACACACACACACGCACGCA 1 chr9:135967565-135968065 ( 10) ACACACACACACACACACACACGCCTGCACA 1 chrX:107672910-107673410 ( 24) ACACACACACACACACACGCACGCACGCACG 1 chr3:194134802-194135302 ( 39) ACACACTCACTCACACACGCACGCACACACA 1 chr19:33274042-33274542 ( 70) ACACACACATGCACACACAGACAGACACAGA 1 chr19:36916390-36916890 ( 46) ACACTCACACACACAACCACACACCCACACT 1 chr11:120346987-12034748 ( 70) ACACACACACACACACAGACAGAGAGAGAGA 1 chr16:88882215-88882715 ( 1) ACACAGCCACACCCACACACAGCCATACACA 1 chr12:52203042-52203542 ( 62) ACACACTCACACACACACGCACATGTTCACA 1 chr19:38224281-38224781 ( 56) GCACGGACTCACACAGCCACACGCACACACA 1 chr5:34182251-34182751 ( 22) ACAAATAAATAAATAAATAAATAAATAAATA 1 chr16:12120420-12120920 ( 36) ACCCAAACATAAACACAGACACACAGCCAGA 1 chr19:40567075-40567575 ( 26) ATAAATAAATAAATAAATAAATAAATAAATA 1 chr5:160008634-160009134 ( 20) ATAAATAAATAAATAAATAAATAAATAAATA 1 chr19:35881941-35882441 ( 34) ATAAATAAATAAATAAATAAATAAATAAATA 1 chr22:42648698-42649198 ( 42) ACACACTCACACTCAGCGGCACACACGCTCA 1 chr1:31387499-31387999 ( 26) CCATCCACACCCCCAGACACATCCACACAGA 1 chr19:36604650-36605150 ( 70) TCACAGGCGCGCCCACTCACACCACCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.2203 E= 5.8e-259 209 -345 -187 -181 -1181 159 -1181 -123 231 -345 -1181 -1181 -81 150 -1181 -281 223 -345 -345 -281 -281 130 -145 -81 214 -345 -345 -123 -81 155 -1181 -1181 223 -1181 -345 -181 -1181 145 -1181 -23 218 -345 -245 -281 -49 150 -1181 -1181 218 -187 -1181 -281 -1181 155 -1181 -81 235 -1181 -1181 -1181 -49 135 -187 -1181 214 -187 -1181 -181 -1181 135 -187 -49 218 -1181 -145 -1181 -49 145 -345 -1181 235 -1181 -1181 -1181 -1181 140 -245 -49 204 -187 -145 -1181 -49 135 -245 -281 214 -187 -245 -1181 -1181 130 -245 -1 209 -345 -145 -281 -81 145 -245 -1181 227 -1181 -345 -281 -1181 130 -113 -81 218 -1181 -187 -281 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 36 E= 5.8e-259 0.833333 0.027778 0.083333 0.055556 0.000000 0.916667 0.000000 0.083333 0.972222 0.027778 0.000000 0.000000 0.111111 0.861111 0.000000 0.027778 0.916667 0.027778 0.027778 0.027778 0.027778 0.750000 0.111111 0.111111 0.861111 0.027778 0.027778 0.083333 0.111111 0.888889 0.000000 0.000000 0.916667 0.000000 0.027778 0.055556 0.000000 0.833333 0.000000 0.166667 0.888889 0.027778 0.055556 0.027778 0.138889 0.861111 0.000000 0.000000 0.888889 0.083333 0.000000 0.027778 0.000000 0.888889 0.000000 0.111111 1.000000 0.000000 0.000000 0.000000 0.138889 0.777778 0.083333 0.000000 0.861111 0.083333 0.000000 0.055556 0.000000 0.777778 0.083333 0.138889 0.888889 0.000000 0.111111 0.000000 0.138889 0.833333 0.027778 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.805556 0.055556 0.138889 0.805556 0.083333 0.111111 0.000000 0.138889 0.777778 0.055556 0.027778 0.861111 0.083333 0.055556 0.000000 0.000000 0.750000 0.055556 0.194444 0.833333 0.027778 0.111111 0.027778 0.111111 0.833333 0.055556 0.000000 0.944444 0.000000 0.027778 0.027778 0.000000 0.750000 0.138889 0.111111 0.888889 0.000000 0.083333 0.027778 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACACACACACACACACACACACA MEME-1 regular expression -------------------------------------------------------------------------------- ACACACACACACACACACACACACACACACA -------------------------------------------------------------------------------- Time 553.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGKGGC MEME-2 width = 9 sites = 257 llr = 2022 E-value = 1.6e-087 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:1:11 pos.-specific C :::6:1::7 probability G aaa:a499: matrix T :::3:4112 bits 2.4 2.1 1.9 1.6 *** * Relative 1.4 *** * Entropy 1.2 *** * ** (11.3 bits) 0.9 *** * *** 0.7 ***** *** 0.5 ********* 0.2 ********* 0.0 --------- Multilevel GGGCGTGGC consensus T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr2:241881327-241881827 + 54 1.43e-05 GGCTGGGTAG GGGCGTGGC CCAGCgtgtg chr20:1118284-1118784 - 15 1.43e-05 AGTGCGAGCG GGGCGTGGC CCCTCAAAGC chr20:47501594-47502094 + 43 1.43e-05 CGGTAGTGCT GGGCGTGGC CTCGGGACTA chr16:89917742-89918242 - 45 1.43e-05 CACAGCAGTC GGGCGTGGC CCCGAAGCCC chr19:3022683-3023183 + 41 1.43e-05 gtacatgagt gggcgtggc tatgtcaata chr12:105330233-10533073 - 72 1.43e-05 GAGCGGCAAG GGGCGTGGC CGGCGCAGCG chr20:62598619-62599119 + 23 1.43e-05 GAGCTGGGCT GGGCGTGGC TAGGCTGGGC chr17:17206303-17206803 - 20 1.43e-05 CATGGGTGCT GGGCGTGGC CTGGCACGTG chr16:88882215-88882715 + 78 1.43e-05 GTGACTGCAC GGGCGTGGC TGTGGCTGTG chr22:37933811-37934311 + 44 1.43e-05 CAGGAGGCTG GGGCGTGGC CACCACTCAG chr22:19806397-19806897 + 33 1.43e-05 GTGGCCGGCA GGGCGTGGC TGGTGCACGC chr2:27050550-27051050 + 75 1.43e-05 gtagtggata gggcgtggc aatccttagg chr22:18001422-18001922 - 91 1.43e-05 A GGGCGTGGC GACAGCTTAT chr19:38304926-38305426 - 25 1.43e-05 CACCGCCCCA GGGCGTGGC CGCTGTTACA chr17:7435052-7435552 + 20 1.43e-05 AAGGATGTGG GGGCGTGGC TACCACGCCC chr22:37674956-37675456 - 21 1.43e-05 GCAGGGACCA GGGCGTGGC TCCTGCTGCG chr2:130181378-130181878 - 39 1.43e-05 CCCGGCCGCG GGGCGTGGC TCTGCGCGCA chr19:49712352-49712852 + 21 1.43e-05 GACGAGTGAG GGGCGTGGC CAGATAGGGC chr5:134226035-134226535 + 38 1.43e-05 TTGACTTTTT GGGCGTGGC TCCCGGAGGG chr6:110958526-110959026 + 4 1.43e-05 GGC GGGCGTGGC CAGTGACTAG chr19:33819864-33820364 - 28 1.43e-05 GCGTCCAGGA GGGCGTGGC CCGCGTCAGC chr2:131492823-131493323 + 21 1.43e-05 CCCGGCCGCG GGGCGTGGC TCTGCGCGCA chr5:145835130-145835630 + 25 1.43e-05 ACAGCCACAT GGGCGTGGC CTTTTTCCTC chr19:48810806-48811306 - 61 1.43e-05 GGCGTGAGCG GGGCGTGGC CGGAACGTCT chr12:121399659-12140015 - 14 1.43e-05 CTGCGGACCT GGGCGTGGC GGAAGGCGCG chr10:17229841-17230341 - 29 1.43e-05 ACATCCCCAA GGGCGTGGC AGCTCTCGCG chr20:32561331-32561831 - 91 1.43e-05 G GGGCGTGGC CCCATCCCCA chr18:32018188-32018688 - 78 1.43e-05 AGTTAAGTGC GGGCGTGGC CATGCTTAAT chr10:75235232-75235732 + 24 1.43e-05 GCGCGGTTCT GGGCGTGGC CTGGGGGACT chr5:96662594-96663094 + 88 1.43e-05 CCGGGCCGCA GGGCGTGGC TGCC chrX:49172172-49172672 + 52 1.43e-05 TCCTGTGGCA GGGCGTGGC GCGGCCTGGG chr11:68257532-68258032 - 88 1.43e-05 TGTT GGGCGTGGC TCAGGAGCAC chr11:59810609-59811109 - 92 1.43e-05 . GGGCGTGGC TGGGCGGACG chr18:49813352-49813852 - 35 1.43e-05 GAAAGGGCAG GGGCGTGGC TCTCGGGGCG chr13:113314011-11331451 + 46 1.43e-05 GGTGTGCCTG GGGCGTGGC CTCCCGGAGG chr16:2003727-2004227 - 80 1.43e-05 CCGGCCGGTG GGGCGTGGC TGCTTAGGGA chr13:113314753-11331525 + 24 1.43e-05 AGTGTGCCTG GGGCGTGGC CTCCTGAGGG chr12:31728871-31729371 + 68 1.43e-05 CCGGTGACCG GGGCGTGGC CACGCTTCGG chr10:88342637-88343137 - 88 1.43e-05 GAAT GGGCGTGGC TGTGTTCTAA chr19:56538300-56538800 - 3 2.35e-05 CGCTGGGCCT GGGTGTGGC CG chr5:37371034-37371534 + 12 2.35e-05 GAGGGTTTTG GGGTGTGGC AGGGTAAAAT chr19:42283252-42283752 + 73 2.35e-05 AGGAGATAAT GGGTGTGGC ACGAAagtgt chr5:154682395-154682895 + 12 2.35e-05 GTGGGTCCGT GGGTGTGGC AATGAACCAC chr1:153544916-153545416 + 60 2.35e-05 TCCCAGAACT GGGTGTGGC TGCTGGAGGC chr19:41262168-41262668 + 12 2.35e-05 GGGCGTTCGC GGGTGTGGC CGGCAGCAAA chr1:37554165-37554665 + 17 2.35e-05 ACTCCCTAGT GGGTGTGGC CGCAGCGACA chr1:31170752-31171252 + 67 2.35e-05 GCCCAAGGCA GGGTGTGGC CTCCATCGCC chr10:15856359-15856859 - 55 2.35e-05 TGGTTAGTAT GGGTGTGGC TGCATTCTAA chr12:90091154-90091654 - 43 2.35e-05 ATGCATCACT GGGTGTGGC TGGGTTATGA chr17:59093774-59094274 - 73 2.35e-05 AAAACCATCT GGGTGTGGC GTCGCATGCC chr3:48446434-48446934 + 19 2.35e-05 GGGCGGGGCC GGGTGTGGC GGCGCGCTCG chr11:117143897-11714439 + 50 2.35e-05 GTACCCAACG GGGTGTGGC GGGACACCTG chr19:48170294-48170794 + 40 2.35e-05 CTGGATGAGC GGGTGTGGC TGAGGGTCTG chr19:30391889-30392389 - 76 2.35e-05 CCAAGGGAAA GGGTGTGGC TGAGAGTCCT chr12:57547011-57547511 - 41 2.35e-05 GCCTCTCCAG GGGTGTGGC AGCAGGGCTG chr4:82374061-82374561 + 83 2.35e-05 CGTTAGGCCG GGGTGTGGC TGCACCTCT chr1:227787786-227788286 + 89 2.35e-05 GAGGGGCTGT GGGTGTGGC CAG chr1:93345568-93346068 - 76 2.35e-05 ACCGACTTCC GGGTGTGGC TGCCGCCCTT chr9:38672291-38672791 - 76 2.35e-05 TGGCTCTGCT GGGTGTGGC CAGCGTCTCT chr19:35628730-35629230 + 42 2.35e-05 TTCCCCCTGA GGGTGTGGC CAAATCTCAT chr21:39380938-39381438 + 88 2.35e-05 GGGCGTGGTG GGGTGTGGC CATG chr17:42763331-42763831 + 42 2.35e-05 GTCCTGGACT GGGTGTGGC CTGCAGCCTA chr2:197499757-197500257 - 25 4.57e-05 GGGTAGGGAG GGGCGGGGC TCGCGCGCAG chr19:39410128-39410628 - 38 4.57e-05 AAAGGGTGTA GGGCGGGGC AGAAGGGTGC chr19:55643332-55643832 - 66 4.57e-05 AGGAAGGTTG GGGCGGGGC GCCCGGGCCG chr9:136727970-136728470 - 75 4.57e-05 GGCGCTGCTT GGGCGGGGC GGATTGACTC chr19:18571485-18571985 + 71 4.57e-05 GATGGCGGCA GGGCGGGGC CCAAGGCGCG chr1:32702931-32703431 + 82 4.57e-05 CTGTCGTGAA GGGCGGGGC AGGGCGCGGC chr12:121888502-12188900 - 17 4.57e-05 AACAGTCAAG GGGCGGGGC TTGGGATGGG chr19:36214329-36214829 - 64 4.57e-05 TGGGAGTCCT GGGCGGGGC CGGGGCGTGT chr22:41446597-41447097 + 92 4.57e-05 CGCCCTGCAG GGGCGGGGC chr1:45521705-45522205 - 86 4.57e-05 CGCGCC GGGCGGGGC TCGGGCCACA chr19:41959091-41959591 - 61 4.57e-05 GGCCGGCGTC GGGCGGGGC CGGCGGGGTC chr12:96035724-96036224 + 39 4.57e-05 CATATAGCGA GGGCGGGGC GGAGCAAAAA chr20:63941617-63942117 + 42 4.57e-05 GCAGGGAATG GGGCGGGGC AGGAAAGGGG chr7:129224503-129225003 - 76 4.57e-05 CGCGCCCCAT GGGCGGGGC CCGCAGCGTC chr19:10836436-10836936 + 30 4.57e-05 AAAAGGGCTG GGGCGGGGC GGAGATACCT chr1:31944238-31944738 + 59 4.57e-05 TCTTTTGCAG GGGCGGGGC GGAGGGGGCA chr5:10353459-10353959 - 10 4.57e-05 GGCGAGGCCT GGGCGGGGC GCCGAGGCG chr19:43527032-43527532 + 24 4.57e-05 ACCCCGGGAA GGGCGGGGC GGGGGCGGAG chr12:6723915-6724415 - 3 4.57e-05 CCAGCGCACC GGGCGGGGC CG chr17:80147121-80147621 + 12 4.57e-05 ATCTCGTTGA GGGCGGGGC ACCCAGTTCC chr19:40465370-40465870 - 17 4.57e-05 GAGCCGGGGC GGGCGGGGC ATGTCACGGG chr5:111512327-111512827 - 52 4.57e-05 TCGGGCCAGG GGGCGGGGC TGGGGGCTCG chr16:22195552-22196052 - 91 4.57e-05 A GGGCGGGGC GCCTCCGTCA chr19:38851671-38852171 + 46 4.57e-05 ACAGAGACGG GGGCGGGGC CGCGTCTGAA chr13:99498361-99498861 - 87 4.57e-05 GCCGG GGGCGGGGC TCGTACGCGG chr12:128823805-12882430 - 85 4.57e-05 GTGCCCG GGGCGGGGC CGGAAGTTCC chr1:114716539-114717039 - 28 4.57e-05 ATTACGTAGC GGGCGGGGC CGGAAGTGCC chr12:57522140-57522640 + 51 4.57e-05 GAAGCCTTTG GGGCGGGGC AGGGCAAGTC chr10:97687275-97687775 + 47 4.57e-05 CGCGGGAGCT GGGCGGGGC TGCATTCCTG chr11:118436003-11843650 + 12 4.57e-05 CTCTCCCGGA GGGCGGGGC ATGCAGTTAT chr19:37506125-37506625 - 50 4.57e-05 CGCAAGGAAA GGGCGGGGC TGCCGCAGCG chr7:99408619-99409119 + 91 4.57e-05 CGCGCGGGTA GGGCGGGGC T chr6:3023787-3024287 + 48 4.57e-05 GCTGCATCCG GGGCGGGGC TGGCAGGCAA chr19:33521551-33522051 + 87 4.57e-05 ggcggggtaa gggcggggc agggg chr3:155854348-155854848 + 65 4.57e-05 CGTGCGGCCG GGGCGGGGC GCCGCCCAAA chr5:139747046-139747546 + 73 4.57e-05 GCTGGCAGGT GGGCGGGGC TGCAGCAGAG chr17:41689236-41689736 + 71 6.92e-05 TGCATCAGCT GGGTGGGGC ACCGCCTGGC chr16:29805287-29805787 + 36 6.92e-05 TACACCGCTG GGGTGGGGC GGGGAGGACG chr19:38683955-38684455 - 83 6.92e-05 TTTATGACT GGGTGGGGC ATAAGGCCTA chr19:39833718-39834218 - 80 6.92e-05 GCGCGGGGAC GGGTGGGGC GGCAAGCGGT chr17:62423596-62424096 + 46 6.92e-05 TTCTGAAAGA GGGCGTGGT CCGCAGGAAG chr12:122526959-12252745 + 3 6.92e-05 CA GGGTGGGGC AACTTCCTAT chr20:33709923-33710423 - 30 6.92e-05 AGTGGGGAAA GGGCGTGGT TCTGGATAGA chr6:42147231-42147731 + 62 6.92e-05 agtagtggct gggcgtggt gggtcatccc chr15:31215364-31215864 + 90 6.92e-05 GACCTAGCCC GGGTGGGGC GA chr17:79777454-79777954 + 35 6.92e-05 GCCGGGGGAA GGGTGGGGC CCCGCGTGCC chr9:131373549-131374049 + 33 6.92e-05 CGTCTAggcc gggcgtggt ggctcacgcc chr17:59106971-59107471 + 24 6.92e-05 tgagattcca gggtggggc ccaggccatc chr14:99253365-99253865 + 33 6.92e-05 gcagggagca gggtggggc tctgactcgg chr1:47437487-47437987 - 27 6.92e-05 TCCCTGGGCG GGGTGGGGC GAGGCGACAG chr4:731334-731834 + 38 6.92e-05 CGTCGTGGGT GGGCGTGGT CCTCGGGCAT chr19:40806707-40807207 - 2 6.92e-05 TTACAAGGCC GGGTGGGGC T chr1:31155257-31155757 - 59 6.92e-05 GGCCCAAAGC GGGTGGGGC GCGCAGACTC chr3:9396757-9397257 - 51 6.92e-05 GTTGCCCCCT GGGTGGGGC GGGTAGGTAG chr5:181187993-181188493 + 39 6.92e-05 aaaattagcc gggcgtggt ggcgcatgcc chr14:103520902-10352140 - 76 6.92e-05 CCCCTCGCGG GGGTGGGGC CCCTCGCGGC chr20:50166008-50166508 + 79 6.92e-05 TGCGAATCGA GGGTGGGGC CTCTGCTGAG chr3:128123756-128124256 - 54 6.92e-05 ATCAAATCCG GGGCGTGGT CCCACTGTGC chr10:101569981-10157048 - 46 6.92e-05 GGGTGGAGTG GGGTGGGGC GGAAGGGTCC chr19:39033050-39033550 + 80 6.92e-05 aaaattagct gggcgtggt agcacgcgcc chr1:159924365-159924865 - 47 7.51e-05 TAACGGCCCA GGGTGTGGT CGTGGGGGTG chr17:75036566-75037066 + 34 7.51e-05 CGCAGGGGAA GGGTGTGGT ACTTCTGTTA chr19:42281183-42281683 + 52 7.51e-05 CCCCAGGCCT GGGTGTGGT GGCACAGTGG chr19:37594320-37594820 - 2 7.51e-05 GCAGTGGCGG GGGTGTGGT G chr10:14691379-14691879 + 37 7.51e-05 AAACTTggct gggtgtggt ggctcatgcc chr19:4869968-4870468 - 63 7.51e-05 CTAACAGGCA GGGTGTGGT CCTGCCTCAG chr15:67254483-67254983 - 69 8.94e-05 GGGGGTCTAG GGGCGGGGT CAGGCCAGCC chr1:218285015-218285515 - 5 8.94e-05 CAAGGTTCCG GGGCGGGGT CGTC chr19:49641785-49642285 - 55 8.94e-05 GGGACACATG GGGCGGGGT CCGCGCGATG chr13:24512550-24513050 - 74 8.94e-05 GCCTGGTGCG GGGCGGGGT TCCGGCGCAG chr16:29816057-29816557 + 86 8.94e-05 TCGATCTCCG GGGCGGGGT CCTTGG chr8:42152467-42152967 - 12 8.94e-05 GTGTGTGCCG GGGCGGGGT GGCTTCCGGG chr6:87155192-87155692 - 2 8.94e-05 GAAAGGAGAA GGGCGGGGT T chr6:150142560-150143060 - 46 8.94e-05 GACGGGCGTG GGGCGGGGT GCCAGGGGAT chr1:241998479-241998979 - 53 9.87e-05 GGGGGCGTGG GGGTGGGGT TCCGATCCTG chr10:17228273-17228773 - 77 9.87e-05 CGAGGGAGAG GGGTGGGGT CGCTTAGTCA chrX:107672910-107673410 - 70 9.87e-05 CTCTGGAGTG GGGTGGGGT GGTGAGGTGC chr2:55419678-55420178 - 6 9.87e-05 GGGCGGCGAG GGGTGGGGT GTGAT chr6:41451010-41451510 - 43 9.87e-05 GATGGCGTGG GGGTGGGGT CTCAAGGGGA chr17:8295477-8295977 + 67 9.87e-05 GGTTGTGACC GGGTGGGGT CACATAAGTT chr17:60392240-60392740 + 80 9.87e-05 GGCGTTCGGC GGGTGGGGT CCGAGCAGCT chr5:124740939-124741439 + 33 1.17e-04 CACGTATTAA GGGAGTGGC GACTTTTACA chr19:35154633-35155133 - 79 1.17e-04 AGAGAGATGT GGGCGTGGA TGGGGGGCGG chr19:40602308-40602808 - 51 1.17e-04 GGAGGAGAGA GGGAGTGGC AGCGGGCGGG chr12:13098561-13099061 + 76 1.17e-04 AAATGGGGAT GGGAGTGGC AGACTCTTAA chr12:121798153-12179865 - 85 1.17e-04 TATTGCT GGGAGTGGC TGCAGGGGGT chr1:110407426-110407926 + 79 1.17e-04 GACGCGAGCG GGGCGTGGA CCGTAACGGC chr17:17913890-17914390 + 55 1.17e-04 CATTCCCTCT GGGCGTGGA CAGAGGAGGG chr14:90383208-90383708 - 88 1.50e-04 GGCG GGGCGAGGC AAGGGCGAGG chr14:24188656-24189156 + 19 1.50e-04 CCGGAGGAAA GGGCGTTGC TGCACGCCCC chr13:24922751-24923251 + 23 1.50e-04 CCACAGCGAC GGGCGTTGC CCGGCGGGGG chr1:228459062-228459562 + 66 1.50e-04 CGCCCCCCAT GGGCGAGGC CAGACGTGGC chr20:324145-324645 + 44 1.50e-04 TGCTTCCCAA GGGCGAGGC CTCAGCGCCC chr6:149473216-149473716 - 49 1.50e-04 GGGCGAAGTG GGGCGTTGC CCAAACAAGT chr3:9749891-9750391 + 88 1.50e-04 AGCACCGTGT GGGCGAGGC CTTA chr6:26285328-26285828 - 22 1.50e-04 CGGCATATAA GGGCGTTGC TTTGCCTTGG chr7:135510158-135510658 + 86 1.50e-04 CCCAAGACTG GGGCGAGGC TAAACA chr20:45934491-45934991 + 39 1.50e-04 gcgctgggga gggcgaggc ggaggcggCA chr17:42998041-42998541 - 49 1.78e-04 GGGAAACGCA GGGCGCGGC AGCTCAAGTA chr17:16380778-16381278 + 7 1.78e-04 GAGGTT GGGCGCGGC GAACTACTTT chr16:22232746-22233246 + 29 1.78e-04 AGCAGGTATT GGGTGTGGA TTGTGAAAGG chr1:25247293-25247793 + 37 1.78e-04 GTTCCGTGGT GGGCGCGGC TCTTCTCTTG chr12:56079832-56080332 + 14 1.78e-04 GCGCGGGAGG GGGCGCGGC CGTGActcac chr20:38446388-38446888 - 69 1.78e-04 ATACGGCTGG GGGCGCGGC TGCAGCCTAG chr1:61887421-61887921 + 35 1.78e-04 GAAGAGGTCA GGGTGTGGA TAGTTTTGTT chr9:15422470-15422970 - 39 1.78e-04 GCCCGCCCCA GGGCGCGGC ACCGCGAGGC chr18:3261557-3262057 - 67 1.78e-04 TGGGCCCGCT GGGCGCGGC TGGGCAGGCC chr19:17511803-17512303 - 54 1.78e-04 TGCAGACAGT GGGCGCGGC CCTTTCGGCA chr19:39406786-39407286 - 65 1.78e-04 CCAGGCTGGA GGGCGCGGC GCTAGGGAGC chr10:50067633-50068133 - 74 2.08e-04 AAGCTGCCCG GGGCGTGAC CGGCCTCACG chr17:59619583-59620083 + 61 2.08e-04 AAGGCGGAGG GGGTGAGGC GACTGGGCGG chr1:25998131-25998631 - 59 2.08e-04 TATTTGAGGA GGGTGAGGC GGAGGGTTAC chr10:45726938-45727438 - 81 2.08e-04 AAGCTGCCCG GGGCGTGAC CGGCCTCACG chr6:27388749-27389249 + 61 2.08e-04 GACCCGCCCG GGGTGTGTC GGGGGTACTC chr12:50025154-50025654 - 90 2.08e-04 TT GGGTGAGGC GCGGAGCGAA chr6:149963659-149964159 + 28 2.08e-04 GACGAGCCCG GGGCGTGAC GGGGTGGAGC chr17:35587234-35587734 + 19 2.08e-04 GTTGCCTTTA GGGTGTGTC CCTAATTGAC chr17:15262358-15262858 + 57 2.08e-04 CGCTGCAGTA GGGTGTGTC CCTGGGTCAG chr19:39341693-39342193 + 74 2.08e-04 GGACAGCCTT GGGTGAGGC GGGCCACCCA chrX:118495415-118495915 - 30 2.08e-04 CGAAGCAGGA GGGTGTGTC TGATGGGGAA chr17:2484751-2485251 - 19 2.23e-04 CTGTAATAGA GGGTGCGGC CCATTAGCCT chr20:50790632-50791132 + 35 2.23e-04 GGTTTGGGCA GGGTGCGGC CTGGGCGGGC chr21:46635665-46636165 - 83 2.57e-04 CGCAGGGAA GGGTGTGAC GGGGACCGAG chr10:101830486-10183098 - 44 2.57e-04 CTGCGTGTGG GGGAGGGGC GTGCCCCAGG chr19:17334709-17335209 - 80 2.57e-04 CCATCAGTGC GGGCGGGGA CCAGCAGCAG chr2:231666332-231666832 + 20 2.57e-04 gaggcaggct gggcgggga gagagggagg chr8:37736355-37736855 + 61 2.57e-04 GCGTGCTGAG GGGTGTGAC GGTTTTCTTG chr13:40770995-40771495 - 3 2.57e-04 GCGGAAGAGA GGGCGGGGA CG chr19:40715487-40715987 - 9 2.57e-04 TTCCGCAGGT GGGCGGGGA GCGGAGAG chr6:15956303-15956803 + 89 2.57e-04 gccagcacct gggaggggc tgc chr15:68277544-68278044 - 38 2.57e-04 GCCGGAACTT GGGCGGGGA GGAAGACGAG chr17:2393221-2393721 - 63 2.57e-04 GTTACGCCTG GGGCGGGGA AAACTCCGAT chr15:72230289-72230789 + 54 2.57e-04 AGCAAGCAGG GGGAGGGGC GGCGAGAGGG chr6:159726837-159727337 - 65 2.57e-04 AGCGGCCGAG GGGAGGGGC GGGCCAGCGA chr9:129175671-129176171 - 79 2.57e-04 CCCCGGGGGA GGGAGGGGC CGGGACCGCC chr6:37169478-37169978 - 53 2.57e-04 AGGAAGGATG GGGAGGGGC GTATCGATTC chr20:327057-327557 - 60 2.57e-04 CCCCAGGGAA GGGAGGGGC GCAGGAGGCG chr19:33274042-33274542 + 7 2.57e-04 ggtgtg GGGTGTGAC TCACACAGGC chr18:31206871-31207371 - 40 2.57e-04 GTGGAGATGT GGGAGGGGC AGGATTGGGA chr15:75347346-75347846 - 50 2.86e-04 ACGCCAGAAC GGGCGGTGC CCGGGAGCGC chr19:38975245-38975745 - 21 2.86e-04 CTGCCCGGAG GGGCGGGTC CCTGGGAGTC chr5:5422186-5422686 + 10 2.86e-04 TTACGTCAC GGGCGGGTC ACCGCCCACA chr3:3179477-3179977 + 41 2.86e-04 GGCTGGGACA GGGCGGTGC CGAAGACTCC chr12:111405180-11140568 - 44 2.86e-04 CCGCAGGGCT GGGCGGTGC AATAGCGACC chr19:35248247-35248747 - 36 2.86e-04 TGTTGAGATA GGGCGGGTC CCGCCGCGCA chr1:153566401-153566901 - 1 2.86e-04 GCCACAGGAA GGGCGGTGC chr1:229508193-229508693 + 32 2.86e-04 GTGACGTTAA GGGCGGTGC CCAGTCAGCG chr8:26513649-26514149 + 54 2.86e-04 GCGGGGCTAG GGGCGGTGC CGccctcccc chr1:173868329-173868829 - 60 2.86e-04 CCCCGCGAGG GGGCGGGTC CGGCAGATCA chr1:228486545-228487045 + 70 2.86e-04 TGCCCATGCA GGGCGGGTC CGTGCAGGAT chr5:132963572-132964072 - 44 2.86e-04 TATACCGCTC GGGCGGGTC CTTTGCCTGG chr7:65982015-65982515 + 32 2.86e-04 GGTGCCCGTA GGGCGGGTC GCGTGACGCG chr17:51120889-51121389 + 20 2.86e-04 GGGATTCGCG GGGCGGGTC CCAGGGGAAA chr5:181246145-181246645 - 40 3.01e-04 CCTTGGGCGT GGGTGGGGA CCTGGACTCC chr3:15860025-15860525 + 68 3.01e-04 GGTTTGGGGA GGGTGGGGA GCCAAGGAGT chr15:66504639-66505139 - 17 3.01e-04 CATATACAGC GGGAGTGGT AAGCACTTCC chr1:150268778-150269278 - 82 3.01e-04 GGCCTTCCGG GGGTGGGGA TTAGATGGGA chr11:59557318-59557818 - 66 3.64e-04 TTCCTTGACA GGGCGGGAC TGTCTCATGT chr1:224615783-224616283 - 80 3.64e-04 AGCGGAGGTG GGGCGGGAC CGGTTGGAGC chr18:35497783-35498283 + 84 3.64e-04 AGATGTCAGC GGGCGTTGT CCTGCCAC chr9:135967565-135968065 + 67 3.64e-04 GCCtgtgtgt gggcgtgtt gtgtgcatgt chr17:51121700-51122200 - 51 3.64e-04 CTCTAGGCGT GGGCGTTGT GTCATTCCCC chr22:39520180-39520680 - 26 3.64e-04 TTTATGCCCA GGGCGTAGC TGTGACGAGA chr22:29306049-29306549 - 41 3.64e-04 CGGCTGGGCT GGGCGGGAC GTCGGGCGGG chr3:11846636-11847136 - 55 3.64e-04 TGCGTGCGTG GGGCGTAGC AAGGGACGGA chr1:61724948-61725448 + 44 3.64e-04 AAGGGCAACA GGGCGAGGT TCTTAAAGGG chr17:8138725-8139225 - 78 3.64e-04 GGCTGGAGGC GGGCGTGTT GATAGGCAGC chr1:45303819-45304319 - 77 3.64e-04 CCGCGGGGCA GGGTGGTGC TCCTGCTGCA chr6:10694464-10694964 + 24 3.64e-04 CCCTTCAGAC GGGCGTAGC TGGCACCTTC chr1:111755564-111756064 + 52 3.64e-04 CTTCCAGGCC GGGCGTGTT AGTGTCTTCG chr5:40835046-40835546 + 34 3.78e-04 ACTTCCTGCG GGGCGCGGT GCAGCGTTCT chr16:23149339-23149839 + 47 3.78e-04 TGGAGGCTGC GGGCGCGGT CCTGCTGCGT chr12:48716917-48717417 + 32 3.78e-04 CAGATGggcc gggcgcggt ggttcacgcc chr17:75905060-75905560 + 48 3.78e-04 ATTGAGggct gggcgcggt ggctcacgcc chr5:150449690-150450190 - 71 4.13e-04 CTCACCCCGC GGGTGTAGC CGCTTCGTAC chr1:31387499-31387999 - 59 4.13e-04 CTCGGGGTGT GGGTGAGGT CATCTGTGTG chr22:37686127-37686627 - 16 4.13e-04 AGACACTTCC GGGTGTAGC GTACTCATCC chr1:62783603-62784103 + 5 4.13e-04 GCAA GGGCGTGAT GCTGCATGGC chr10:74825653-74826153 + 7 4.13e-04 GGGTAG GGGTGTGTT GGGGGGGGAA chr3:168096018-168096518 + 12 4.13e-04 GCCTGAGTCT GGGTGAGGT TCGGTGAACA chr19:41310145-41310645 + 43 4.22e-04 GGCGGCGGGT GGGTGCGGT TGCGGTGTCT chr5:176388757-176389257 + 23 4.22e-04 ATAGGTAAGT GGGTGCGGT AGGAACTGCA chr1:208184288-208184788 - 14 4.35e-04 AGAGGCCCTG GGGTGTGAT GAGTAAGTCA chr7:135232679-135233179 + 53 4.68e-04 GGGGGCGCCT GGGCGGAGC CATGCTTCTT chr22:41468755-41469255 - 36 4.68e-04 TGAACGCAAT GGGCGGAGC TCACGTGCAA chr15:65869086-65869586 - 88 4.68e-04 ACAA GGGCGGTGT GCGCGAGAGT chr20:58650898-58651398 + 3 4.68e-04 GA GGGCGGAGC ACTCCCGTGC chr6:49463024-49463524 - 44 4.68e-04 GCTGGAGGGA GGGCGGTGT CGGCCTACGC chr19:57240416-57240916 + 44 4.68e-04 TCTAGGGAGG GGGCGGTGT TCCGTGGCCG chr12:54288422-54288922 + 69 4.68e-04 aggccaaggt gggcgggtt gccagcctgg chr12:49060567-49061067 - 34 5.04e-04 TCCTCCGAGA GGGCGGGAT CCCTCCGCCG chr10:72354700-72355200 + 81 6.24e-04 GCGGGCAGCC GGGCGCGGA GTGATGACAT chr1:26432086-26432586 - 67 6.78e-04 TAGCTCCGCT GGGCGCGTC CCCACGGCTT chr5:1633752-1634252 + 45 7.24e-04 GGGCAGGGCC GGGCGTTAC CGCCACTTCC chr10:75402418-75402918 + 52 8.35e-04 ATTACAAGGC GGGTGCGAC TTGAagggaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:241881327-241881827 1.4e-05 53_[+2]_38 chr20:1118284-1118784 1.4e-05 14_[-2]_77 chr20:47501594-47502094 1.4e-05 42_[+2]_49 chr16:89917742-89918242 1.4e-05 44_[-2]_47 chr19:3022683-3023183 1.4e-05 40_[+2]_51 chr12:105330233-10533073 1.4e-05 71_[-2]_20 chr20:62598619-62599119 1.4e-05 22_[+2]_69 chr17:17206303-17206803 1.4e-05 19_[-2]_72 chr16:88882215-88882715 1.4e-05 77_[+2]_14 chr22:37933811-37934311 1.4e-05 43_[+2]_48 chr22:19806397-19806897 1.4e-05 32_[+2]_59 chr2:27050550-27051050 1.4e-05 74_[+2]_17 chr22:18001422-18001922 1.4e-05 90_[-2]_1 chr19:38304926-38305426 1.4e-05 24_[-2]_67 chr17:7435052-7435552 1.4e-05 19_[+2]_72 chr22:37674956-37675456 1.4e-05 20_[-2]_71 chr2:130181378-130181878 1.4e-05 38_[-2]_53 chr19:49712352-49712852 1.4e-05 20_[+2]_71 chr5:134226035-134226535 1.4e-05 37_[+2]_54 chr6:110958526-110959026 1.4e-05 3_[+2]_88 chr19:33819864-33820364 1.4e-05 27_[-2]_64 chr2:131492823-131493323 1.4e-05 20_[+2]_71 chr5:145835130-145835630 1.4e-05 24_[+2]_67 chr19:48810806-48811306 1.4e-05 60_[-2]_31 chr12:121399659-12140015 1.4e-05 13_[-2]_78 chr10:17229841-17230341 1.4e-05 28_[-2]_63 chr20:32561331-32561831 1.4e-05 90_[-2]_1 chr18:32018188-32018688 1.4e-05 77_[-2]_14 chr10:75235232-75235732 1.4e-05 23_[+2]_68 chr5:96662594-96663094 1.4e-05 87_[+2]_4 chrX:49172172-49172672 1.4e-05 51_[+2]_40 chr11:68257532-68258032 1.4e-05 87_[-2]_4 chr11:59810609-59811109 1.4e-05 91_[-2] chr18:49813352-49813852 1.4e-05 34_[-2]_57 chr13:113314011-11331451 1.4e-05 45_[+2]_46 chr16:2003727-2004227 1.4e-05 79_[-2]_12 chr13:113314753-11331525 1.4e-05 23_[+2]_68 chr12:31728871-31729371 1.4e-05 67_[+2]_24 chr10:88342637-88343137 1.4e-05 87_[-2]_4 chr19:56538300-56538800 2.4e-05 2_[-2]_89 chr5:37371034-37371534 2.4e-05 11_[+2]_80 chr19:42283252-42283752 2.4e-05 72_[+2]_19 chr5:154682395-154682895 2.4e-05 11_[+2]_80 chr1:153544916-153545416 2.4e-05 59_[+2]_32 chr19:41262168-41262668 2.4e-05 11_[+2]_80 chr1:37554165-37554665 2.4e-05 16_[+2]_75 chr1:31170752-31171252 2.4e-05 66_[+2]_25 chr10:15856359-15856859 2.4e-05 54_[-2]_37 chr12:90091154-90091654 2.4e-05 42_[-2]_49 chr17:59093774-59094274 2.4e-05 72_[-2]_19 chr3:48446434-48446934 2.4e-05 18_[+2]_73 chr11:117143897-11714439 2.4e-05 49_[+2]_42 chr19:48170294-48170794 2.4e-05 39_[+2]_52 chr19:30391889-30392389 2.4e-05 75_[-2]_16 chr12:57547011-57547511 2.4e-05 40_[-2]_51 chr4:82374061-82374561 2.4e-05 82_[+2]_9 chr1:227787786-227788286 2.4e-05 88_[+2]_3 chr1:93345568-93346068 2.4e-05 75_[-2]_16 chr9:38672291-38672791 2.4e-05 75_[-2]_16 chr19:35628730-35629230 2.4e-05 41_[+2]_50 chr21:39380938-39381438 2.4e-05 87_[+2]_4 chr17:42763331-42763831 2.4e-05 41_[+2]_50 chr2:197499757-197500257 4.6e-05 24_[-2]_67 chr19:39410128-39410628 4.6e-05 37_[-2]_54 chr19:55643332-55643832 4.6e-05 65_[-2]_26 chr9:136727970-136728470 4.6e-05 74_[-2]_17 chr19:18571485-18571985 4.6e-05 70_[+2]_21 chr1:32702931-32703431 4.6e-05 81_[+2]_10 chr12:121888502-12188900 4.6e-05 16_[-2]_75 chr19:36214329-36214829 4.6e-05 63_[-2]_28 chr22:41446597-41447097 4.6e-05 91_[+2] chr1:45521705-45522205 4.6e-05 85_[-2]_6 chr19:41959091-41959591 4.6e-05 60_[-2]_31 chr12:96035724-96036224 4.6e-05 38_[+2]_53 chr20:63941617-63942117 4.6e-05 41_[+2]_50 chr7:129224503-129225003 4.6e-05 75_[-2]_16 chr19:10836436-10836936 4.6e-05 29_[+2]_62 chr1:31944238-31944738 4.6e-05 58_[+2]_33 chr5:10353459-10353959 4.6e-05 9_[-2]_82 chr19:43527032-43527532 4.6e-05 23_[+2]_68 chr12:6723915-6724415 4.6e-05 2_[-2]_89 chr17:80147121-80147621 4.6e-05 11_[+2]_80 chr19:40465370-40465870 4.6e-05 16_[-2]_75 chr5:111512327-111512827 4.6e-05 51_[-2]_40 chr16:22195552-22196052 4.6e-05 90_[-2]_1 chr19:38851671-38852171 4.6e-05 45_[+2]_46 chr13:99498361-99498861 4.6e-05 86_[-2]_5 chr12:128823805-12882430 4.6e-05 84_[-2]_7 chr1:114716539-114717039 4.6e-05 27_[-2]_64 chr12:57522140-57522640 4.6e-05 50_[+2]_41 chr10:97687275-97687775 4.6e-05 46_[+2]_45 chr11:118436003-11843650 4.6e-05 11_[+2]_80 chr19:37506125-37506625 4.6e-05 49_[-2]_42 chr7:99408619-99409119 4.6e-05 90_[+2]_1 chr6:3023787-3024287 4.6e-05 47_[+2]_44 chr19:33521551-33522051 4.6e-05 86_[+2]_5 chr3:155854348-155854848 4.6e-05 64_[+2]_27 chr5:139747046-139747546 4.6e-05 72_[+2]_19 chr17:41689236-41689736 6.9e-05 70_[+2]_21 chr16:29805287-29805787 6.9e-05 35_[+2]_56 chr19:38683955-38684455 6.9e-05 82_[-2]_9 chr19:39833718-39834218 6.9e-05 79_[-2]_12 chr17:62423596-62424096 6.9e-05 45_[+2]_46 chr12:122526959-12252745 6.9e-05 2_[+2]_89 chr20:33709923-33710423 6.9e-05 29_[-2]_62 chr6:42147231-42147731 6.9e-05 61_[+2]_30 chr15:31215364-31215864 6.9e-05 89_[+2]_2 chr17:79777454-79777954 6.9e-05 34_[+2]_57 chr9:131373549-131374049 6.9e-05 32_[+2]_59 chr17:59106971-59107471 6.9e-05 23_[+2]_68 chr14:99253365-99253865 6.9e-05 32_[+2]_59 chr1:47437487-47437987 6.9e-05 26_[-2]_65 chr4:731334-731834 6.9e-05 37_[+2]_54 chr19:40806707-40807207 6.9e-05 1_[-2]_90 chr1:31155257-31155757 6.9e-05 58_[-2]_33 chr3:9396757-9397257 6.9e-05 50_[-2]_41 chr5:181187993-181188493 6.9e-05 38_[+2]_53 chr14:103520902-10352140 6.9e-05 75_[-2]_16 chr20:50166008-50166508 6.9e-05 78_[+2]_13 chr3:128123756-128124256 6.9e-05 53_[-2]_38 chr10:101569981-10157048 6.9e-05 45_[-2]_46 chr19:39033050-39033550 6.9e-05 79_[+2]_12 chr1:159924365-159924865 7.5e-05 46_[-2]_45 chr17:75036566-75037066 7.5e-05 33_[+2]_58 chr19:42281183-42281683 7.5e-05 51_[+2]_40 chr19:37594320-37594820 7.5e-05 1_[-2]_90 chr10:14691379-14691879 7.5e-05 36_[+2]_55 chr19:4869968-4870468 7.5e-05 62_[-2]_29 chr15:67254483-67254983 8.9e-05 68_[-2]_23 chr1:218285015-218285515 8.9e-05 4_[-2]_87 chr19:49641785-49642285 8.9e-05 54_[-2]_37 chr13:24512550-24513050 8.9e-05 73_[-2]_18 chr16:29816057-29816557 8.9e-05 85_[+2]_6 chr8:42152467-42152967 8.9e-05 11_[-2]_80 chr6:87155192-87155692 8.9e-05 1_[-2]_90 chr6:150142560-150143060 8.9e-05 45_[-2]_46 chr1:241998479-241998979 9.9e-05 52_[-2]_39 chr10:17228273-17228773 9.9e-05 76_[-2]_15 chrX:107672910-107673410 9.9e-05 69_[-2]_22 chr2:55419678-55420178 9.9e-05 5_[-2]_86 chr6:41451010-41451510 9.9e-05 42_[-2]_49 chr17:8295477-8295977 9.9e-05 66_[+2]_25 chr17:60392240-60392740 9.9e-05 79_[+2]_12 chr5:124740939-124741439 0.00012 32_[+2]_59 chr19:35154633-35155133 0.00012 78_[-2]_13 chr19:40602308-40602808 0.00012 50_[-2]_41 chr12:13098561-13099061 0.00012 75_[+2]_16 chr12:121798153-12179865 0.00012 84_[-2]_7 chr1:110407426-110407926 0.00012 78_[+2]_13 chr17:17913890-17914390 0.00012 54_[+2]_37 chr14:90383208-90383708 0.00015 87_[-2]_4 chr14:24188656-24189156 0.00015 18_[+2]_73 chr13:24922751-24923251 0.00015 22_[+2]_69 chr1:228459062-228459562 0.00015 65_[+2]_26 chr20:324145-324645 0.00015 43_[+2]_48 chr6:149473216-149473716 0.00015 48_[-2]_43 chr3:9749891-9750391 0.00015 87_[+2]_4 chr6:26285328-26285828 0.00015 21_[-2]_70 chr7:135510158-135510658 0.00015 85_[+2]_6 chr20:45934491-45934991 0.00015 38_[+2]_53 chr17:42998041-42998541 0.00018 48_[-2]_43 chr17:16380778-16381278 0.00018 6_[+2]_85 chr16:22232746-22233246 0.00018 28_[+2]_63 chr1:25247293-25247793 0.00018 36_[+2]_55 chr12:56079832-56080332 0.00018 13_[+2]_78 chr20:38446388-38446888 0.00018 68_[-2]_23 chr1:61887421-61887921 0.00018 34_[+2]_57 chr9:15422470-15422970 0.00018 38_[-2]_53 chr18:3261557-3262057 0.00018 66_[-2]_25 chr19:17511803-17512303 0.00018 53_[-2]_38 chr19:39406786-39407286 0.00018 64_[-2]_27 chr10:50067633-50068133 0.00021 73_[-2]_18 chr17:59619583-59620083 0.00021 60_[+2]_31 chr1:25998131-25998631 0.00021 58_[-2]_33 chr10:45726938-45727438 0.00021 80_[-2]_11 chr6:27388749-27389249 0.00021 60_[+2]_31 chr12:50025154-50025654 0.00021 89_[-2]_2 chr6:149963659-149964159 0.00021 27_[+2]_64 chr17:35587234-35587734 0.00021 18_[+2]_73 chr17:15262358-15262858 0.00021 56_[+2]_35 chr19:39341693-39342193 0.00021 73_[+2]_18 chrX:118495415-118495915 0.00021 29_[-2]_62 chr17:2484751-2485251 0.00022 18_[-2]_73 chr20:50790632-50791132 0.00022 34_[+2]_57 chr21:46635665-46636165 0.00026 82_[-2]_9 chr10:101830486-10183098 0.00026 43_[-2]_48 chr19:17334709-17335209 0.00026 79_[-2]_12 chr2:231666332-231666832 0.00026 19_[+2]_72 chr8:37736355-37736855 0.00026 60_[+2]_31 chr13:40770995-40771495 0.00026 2_[-2]_89 chr19:40715487-40715987 0.00026 8_[-2]_83 chr6:15956303-15956803 0.00026 88_[+2]_3 chr15:68277544-68278044 0.00026 37_[-2]_54 chr17:2393221-2393721 0.00026 62_[-2]_29 chr15:72230289-72230789 0.00026 53_[+2]_38 chr6:159726837-159727337 0.00026 64_[-2]_27 chr9:129175671-129176171 0.00026 78_[-2]_13 chr6:37169478-37169978 0.00026 52_[-2]_39 chr20:327057-327557 0.00026 59_[-2]_32 chr19:33274042-33274542 0.00026 6_[+2]_85 chr18:31206871-31207371 0.00026 39_[-2]_52 chr15:75347346-75347846 0.00029 49_[-2]_42 chr19:38975245-38975745 0.00029 20_[-2]_71 chr5:5422186-5422686 0.00029 9_[+2]_82 chr3:3179477-3179977 0.00029 40_[+2]_51 chr12:111405180-11140568 0.00029 43_[-2]_48 chr19:35248247-35248747 0.00029 35_[-2]_56 chr1:153566401-153566901 0.00029 [-2]_91 chr1:229508193-229508693 0.00029 31_[+2]_60 chr8:26513649-26514149 0.00029 53_[+2]_38 chr1:173868329-173868829 0.00029 59_[-2]_32 chr1:228486545-228487045 0.00029 69_[+2]_22 chr5:132963572-132964072 0.00029 43_[-2]_48 chr7:65982015-65982515 0.00029 31_[+2]_60 chr17:51120889-51121389 0.00029 19_[+2]_72 chr5:181246145-181246645 0.0003 39_[-2]_52 chr3:15860025-15860525 0.0003 67_[+2]_24 chr15:66504639-66505139 0.0003 16_[-2]_75 chr1:150268778-150269278 0.0003 81_[-2]_10 chr11:59557318-59557818 0.00036 65_[-2]_26 chr1:224615783-224616283 0.00036 79_[-2]_12 chr18:35497783-35498283 0.00036 83_[+2]_8 chr9:135967565-135968065 0.00036 66_[+2]_25 chr17:51121700-51122200 0.00036 50_[-2]_41 chr22:39520180-39520680 0.00036 25_[-2]_66 chr22:29306049-29306549 0.00036 40_[-2]_51 chr3:11846636-11847136 0.00036 54_[-2]_37 chr1:61724948-61725448 0.00036 43_[+2]_48 chr17:8138725-8139225 0.00036 77_[-2]_14 chr1:45303819-45304319 0.00036 76_[-2]_15 chr6:10694464-10694964 0.00036 23_[+2]_68 chr1:111755564-111756064 0.00036 51_[+2]_40 chr5:40835046-40835546 0.00038 33_[+2]_58 chr16:23149339-23149839 0.00038 46_[+2]_45 chr12:48716917-48717417 0.00038 31_[+2]_60 chr17:75905060-75905560 0.00038 47_[+2]_44 chr5:150449690-150450190 0.00041 70_[-2]_21 chr1:31387499-31387999 0.00041 58_[-2]_33 chr22:37686127-37686627 0.00041 15_[-2]_76 chr1:62783603-62784103 0.00041 4_[+2]_87 chr10:74825653-74826153 0.00041 6_[+2]_85 chr3:168096018-168096518 0.00041 11_[+2]_80 chr19:41310145-41310645 0.00042 42_[+2]_49 chr5:176388757-176389257 0.00042 22_[+2]_69 chr1:208184288-208184788 0.00044 13_[-2]_78 chr7:135232679-135233179 0.00047 52_[+2]_39 chr22:41468755-41469255 0.00047 35_[-2]_56 chr15:65869086-65869586 0.00047 87_[-2]_4 chr20:58650898-58651398 0.00047 2_[+2]_89 chr6:49463024-49463524 0.00047 43_[-2]_48 chr19:57240416-57240916 0.00047 43_[+2]_48 chr12:54288422-54288922 0.00047 68_[+2]_23 chr12:49060567-49061067 0.0005 33_[-2]_58 chr10:72354700-72355200 0.00062 80_[+2]_11 chr1:26432086-26432586 0.00068 66_[-2]_25 chr5:1633752-1634252 0.00072 44_[+2]_47 chr10:75402418-75402918 0.00084 51_[+2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGKGGC width=9 seqs=257 chr2:241881327-241881827 ( 54) GGGCGTGGC 1 chr20:1118284-1118784 ( 15) GGGCGTGGC 1 chr20:47501594-47502094 ( 43) GGGCGTGGC 1 chr16:89917742-89918242 ( 45) GGGCGTGGC 1 chr19:3022683-3023183 ( 41) GGGCGTGGC 1 chr12:105330233-10533073 ( 72) GGGCGTGGC 1 chr20:62598619-62599119 ( 23) GGGCGTGGC 1 chr17:17206303-17206803 ( 20) GGGCGTGGC 1 chr16:88882215-88882715 ( 78) GGGCGTGGC 1 chr22:37933811-37934311 ( 44) GGGCGTGGC 1 chr22:19806397-19806897 ( 33) GGGCGTGGC 1 chr2:27050550-27051050 ( 75) GGGCGTGGC 1 chr22:18001422-18001922 ( 91) GGGCGTGGC 1 chr19:38304926-38305426 ( 25) GGGCGTGGC 1 chr17:7435052-7435552 ( 20) GGGCGTGGC 1 chr22:37674956-37675456 ( 21) GGGCGTGGC 1 chr2:130181378-130181878 ( 39) GGGCGTGGC 1 chr19:49712352-49712852 ( 21) GGGCGTGGC 1 chr5:134226035-134226535 ( 38) GGGCGTGGC 1 chr6:110958526-110959026 ( 4) GGGCGTGGC 1 chr19:33819864-33820364 ( 28) GGGCGTGGC 1 chr2:131492823-131493323 ( 21) GGGCGTGGC 1 chr5:145835130-145835630 ( 25) GGGCGTGGC 1 chr19:48810806-48811306 ( 61) GGGCGTGGC 1 chr12:121399659-12140015 ( 14) GGGCGTGGC 1 chr10:17229841-17230341 ( 29) GGGCGTGGC 1 chr20:32561331-32561831 ( 91) GGGCGTGGC 1 chr18:32018188-32018688 ( 78) GGGCGTGGC 1 chr10:75235232-75235732 ( 24) GGGCGTGGC 1 chr5:96662594-96663094 ( 88) GGGCGTGGC 1 chrX:49172172-49172672 ( 52) GGGCGTGGC 1 chr11:68257532-68258032 ( 88) GGGCGTGGC 1 chr11:59810609-59811109 ( 92) GGGCGTGGC 1 chr18:49813352-49813852 ( 35) GGGCGTGGC 1 chr13:113314011-11331451 ( 46) GGGCGTGGC 1 chr16:2003727-2004227 ( 80) GGGCGTGGC 1 chr13:113314753-11331525 ( 24) GGGCGTGGC 1 chr12:31728871-31729371 ( 68) GGGCGTGGC 1 chr10:88342637-88343137 ( 88) GGGCGTGGC 1 chr19:56538300-56538800 ( 3) GGGTGTGGC 1 chr5:37371034-37371534 ( 12) GGGTGTGGC 1 chr19:42283252-42283752 ( 73) GGGTGTGGC 1 chr5:154682395-154682895 ( 12) GGGTGTGGC 1 chr1:153544916-153545416 ( 60) GGGTGTGGC 1 chr19:41262168-41262668 ( 12) GGGTGTGGC 1 chr1:37554165-37554665 ( 17) GGGTGTGGC 1 chr1:31170752-31171252 ( 67) GGGTGTGGC 1 chr10:15856359-15856859 ( 55) GGGTGTGGC 1 chr12:90091154-90091654 ( 43) GGGTGTGGC 1 chr17:59093774-59094274 ( 73) GGGTGTGGC 1 chr3:48446434-48446934 ( 19) GGGTGTGGC 1 chr11:117143897-11714439 ( 50) GGGTGTGGC 1 chr19:48170294-48170794 ( 40) GGGTGTGGC 1 chr19:30391889-30392389 ( 76) GGGTGTGGC 1 chr12:57547011-57547511 ( 41) GGGTGTGGC 1 chr4:82374061-82374561 ( 83) GGGTGTGGC 1 chr1:227787786-227788286 ( 89) GGGTGTGGC 1 chr1:93345568-93346068 ( 76) GGGTGTGGC 1 chr9:38672291-38672791 ( 76) GGGTGTGGC 1 chr19:35628730-35629230 ( 42) GGGTGTGGC 1 chr21:39380938-39381438 ( 88) GGGTGTGGC 1 chr17:42763331-42763831 ( 42) GGGTGTGGC 1 chr2:197499757-197500257 ( 25) GGGCGGGGC 1 chr19:39410128-39410628 ( 38) GGGCGGGGC 1 chr19:55643332-55643832 ( 66) GGGCGGGGC 1 chr9:136727970-136728470 ( 75) GGGCGGGGC 1 chr19:18571485-18571985 ( 71) GGGCGGGGC 1 chr1:32702931-32703431 ( 82) GGGCGGGGC 1 chr12:121888502-12188900 ( 17) GGGCGGGGC 1 chr19:36214329-36214829 ( 64) GGGCGGGGC 1 chr22:41446597-41447097 ( 92) GGGCGGGGC 1 chr1:45521705-45522205 ( 86) GGGCGGGGC 1 chr19:41959091-41959591 ( 61) GGGCGGGGC 1 chr12:96035724-96036224 ( 39) GGGCGGGGC 1 chr20:63941617-63942117 ( 42) GGGCGGGGC 1 chr7:129224503-129225003 ( 76) GGGCGGGGC 1 chr19:10836436-10836936 ( 30) GGGCGGGGC 1 chr1:31944238-31944738 ( 59) GGGCGGGGC 1 chr5:10353459-10353959 ( 10) GGGCGGGGC 1 chr19:43527032-43527532 ( 24) GGGCGGGGC 1 chr12:6723915-6724415 ( 3) GGGCGGGGC 1 chr17:80147121-80147621 ( 12) GGGCGGGGC 1 chr19:40465370-40465870 ( 17) GGGCGGGGC 1 chr5:111512327-111512827 ( 52) GGGCGGGGC 1 chr16:22195552-22196052 ( 91) GGGCGGGGC 1 chr19:38851671-38852171 ( 46) GGGCGGGGC 1 chr13:99498361-99498861 ( 87) GGGCGGGGC 1 chr12:128823805-12882430 ( 85) GGGCGGGGC 1 chr1:114716539-114717039 ( 28) GGGCGGGGC 1 chr12:57522140-57522640 ( 51) GGGCGGGGC 1 chr10:97687275-97687775 ( 47) GGGCGGGGC 1 chr11:118436003-11843650 ( 12) GGGCGGGGC 1 chr19:37506125-37506625 ( 50) GGGCGGGGC 1 chr7:99408619-99409119 ( 91) GGGCGGGGC 1 chr6:3023787-3024287 ( 48) GGGCGGGGC 1 chr19:33521551-33522051 ( 87) GGGCGGGGC 1 chr3:155854348-155854848 ( 65) GGGCGGGGC 1 chr5:139747046-139747546 ( 73) GGGCGGGGC 1 chr17:41689236-41689736 ( 71) GGGTGGGGC 1 chr16:29805287-29805787 ( 36) GGGTGGGGC 1 chr19:38683955-38684455 ( 83) GGGTGGGGC 1 chr19:39833718-39834218 ( 80) GGGTGGGGC 1 chr17:62423596-62424096 ( 46) GGGCGTGGT 1 chr12:122526959-12252745 ( 3) GGGTGGGGC 1 chr20:33709923-33710423 ( 30) GGGCGTGGT 1 chr6:42147231-42147731 ( 62) GGGCGTGGT 1 chr15:31215364-31215864 ( 90) GGGTGGGGC 1 chr17:79777454-79777954 ( 35) GGGTGGGGC 1 chr9:131373549-131374049 ( 33) GGGCGTGGT 1 chr17:59106971-59107471 ( 24) GGGTGGGGC 1 chr14:99253365-99253865 ( 33) GGGTGGGGC 1 chr1:47437487-47437987 ( 27) GGGTGGGGC 1 chr4:731334-731834 ( 38) GGGCGTGGT 1 chr19:40806707-40807207 ( 2) GGGTGGGGC 1 chr1:31155257-31155757 ( 59) GGGTGGGGC 1 chr3:9396757-9397257 ( 51) GGGTGGGGC 1 chr5:181187993-181188493 ( 39) GGGCGTGGT 1 chr14:103520902-10352140 ( 76) GGGTGGGGC 1 chr20:50166008-50166508 ( 79) GGGTGGGGC 1 chr3:128123756-128124256 ( 54) GGGCGTGGT 1 chr10:101569981-10157048 ( 46) GGGTGGGGC 1 chr19:39033050-39033550 ( 80) GGGCGTGGT 1 chr1:159924365-159924865 ( 47) GGGTGTGGT 1 chr17:75036566-75037066 ( 34) GGGTGTGGT 1 chr19:42281183-42281683 ( 52) GGGTGTGGT 1 chr19:37594320-37594820 ( 2) GGGTGTGGT 1 chr10:14691379-14691879 ( 37) GGGTGTGGT 1 chr19:4869968-4870468 ( 63) GGGTGTGGT 1 chr15:67254483-67254983 ( 69) GGGCGGGGT 1 chr1:218285015-218285515 ( 5) GGGCGGGGT 1 chr19:49641785-49642285 ( 55) GGGCGGGGT 1 chr13:24512550-24513050 ( 74) GGGCGGGGT 1 chr16:29816057-29816557 ( 86) GGGCGGGGT 1 chr8:42152467-42152967 ( 12) GGGCGGGGT 1 chr6:87155192-87155692 ( 2) GGGCGGGGT 1 chr6:150142560-150143060 ( 46) GGGCGGGGT 1 chr1:241998479-241998979 ( 53) GGGTGGGGT 1 chr10:17228273-17228773 ( 77) GGGTGGGGT 1 chrX:107672910-107673410 ( 70) GGGTGGGGT 1 chr2:55419678-55420178 ( 6) GGGTGGGGT 1 chr6:41451010-41451510 ( 43) GGGTGGGGT 1 chr17:8295477-8295977 ( 67) GGGTGGGGT 1 chr17:60392240-60392740 ( 80) GGGTGGGGT 1 chr5:124740939-124741439 ( 33) GGGAGTGGC 1 chr19:35154633-35155133 ( 79) GGGCGTGGA 1 chr19:40602308-40602808 ( 51) GGGAGTGGC 1 chr12:13098561-13099061 ( 76) GGGAGTGGC 1 chr12:121798153-12179865 ( 85) GGGAGTGGC 1 chr1:110407426-110407926 ( 79) GGGCGTGGA 1 chr17:17913890-17914390 ( 55) GGGCGTGGA 1 chr14:90383208-90383708 ( 88) GGGCGAGGC 1 chr14:24188656-24189156 ( 19) GGGCGTTGC 1 chr13:24922751-24923251 ( 23) GGGCGTTGC 1 chr1:228459062-228459562 ( 66) GGGCGAGGC 1 chr20:324145-324645 ( 44) GGGCGAGGC 1 chr6:149473216-149473716 ( 49) GGGCGTTGC 1 chr3:9749891-9750391 ( 88) GGGCGAGGC 1 chr6:26285328-26285828 ( 22) GGGCGTTGC 1 chr7:135510158-135510658 ( 86) GGGCGAGGC 1 chr20:45934491-45934991 ( 39) GGGCGAGGC 1 chr17:42998041-42998541 ( 49) GGGCGCGGC 1 chr17:16380778-16381278 ( 7) GGGCGCGGC 1 chr16:22232746-22233246 ( 29) GGGTGTGGA 1 chr1:25247293-25247793 ( 37) GGGCGCGGC 1 chr12:56079832-56080332 ( 14) GGGCGCGGC 1 chr20:38446388-38446888 ( 69) GGGCGCGGC 1 chr1:61887421-61887921 ( 35) GGGTGTGGA 1 chr9:15422470-15422970 ( 39) GGGCGCGGC 1 chr18:3261557-3262057 ( 67) GGGCGCGGC 1 chr19:17511803-17512303 ( 54) GGGCGCGGC 1 chr19:39406786-39407286 ( 65) GGGCGCGGC 1 chr10:50067633-50068133 ( 74) GGGCGTGAC 1 chr17:59619583-59620083 ( 61) GGGTGAGGC 1 chr1:25998131-25998631 ( 59) GGGTGAGGC 1 chr10:45726938-45727438 ( 81) GGGCGTGAC 1 chr6:27388749-27389249 ( 61) GGGTGTGTC 1 chr12:50025154-50025654 ( 90) GGGTGAGGC 1 chr6:149963659-149964159 ( 28) GGGCGTGAC 1 chr17:35587234-35587734 ( 19) GGGTGTGTC 1 chr17:15262358-15262858 ( 57) GGGTGTGTC 1 chr19:39341693-39342193 ( 74) GGGTGAGGC 1 chrX:118495415-118495915 ( 30) GGGTGTGTC 1 chr17:2484751-2485251 ( 19) GGGTGCGGC 1 chr20:50790632-50791132 ( 35) GGGTGCGGC 1 chr21:46635665-46636165 ( 83) GGGTGTGAC 1 chr10:101830486-10183098 ( 44) GGGAGGGGC 1 chr19:17334709-17335209 ( 80) GGGCGGGGA 1 chr2:231666332-231666832 ( 20) GGGCGGGGA 1 chr8:37736355-37736855 ( 61) GGGTGTGAC 1 chr13:40770995-40771495 ( 3) GGGCGGGGA 1 chr19:40715487-40715987 ( 9) GGGCGGGGA 1 chr6:15956303-15956803 ( 89) GGGAGGGGC 1 chr15:68277544-68278044 ( 38) GGGCGGGGA 1 chr17:2393221-2393721 ( 63) GGGCGGGGA 1 chr15:72230289-72230789 ( 54) GGGAGGGGC 1 chr6:159726837-159727337 ( 65) GGGAGGGGC 1 chr9:129175671-129176171 ( 79) GGGAGGGGC 1 chr6:37169478-37169978 ( 53) GGGAGGGGC 1 chr20:327057-327557 ( 60) GGGAGGGGC 1 chr19:33274042-33274542 ( 7) GGGTGTGAC 1 chr18:31206871-31207371 ( 40) GGGAGGGGC 1 chr15:75347346-75347846 ( 50) GGGCGGTGC 1 chr19:38975245-38975745 ( 21) GGGCGGGTC 1 chr5:5422186-5422686 ( 10) GGGCGGGTC 1 chr3:3179477-3179977 ( 41) GGGCGGTGC 1 chr12:111405180-11140568 ( 44) GGGCGGTGC 1 chr19:35248247-35248747 ( 36) GGGCGGGTC 1 chr1:153566401-153566901 ( 1) GGGCGGTGC 1 chr1:229508193-229508693 ( 32) GGGCGGTGC 1 chr8:26513649-26514149 ( 54) GGGCGGTGC 1 chr1:173868329-173868829 ( 60) GGGCGGGTC 1 chr1:228486545-228487045 ( 70) GGGCGGGTC 1 chr5:132963572-132964072 ( 44) GGGCGGGTC 1 chr7:65982015-65982515 ( 32) GGGCGGGTC 1 chr17:51120889-51121389 ( 20) GGGCGGGTC 1 chr5:181246145-181246645 ( 40) GGGTGGGGA 1 chr3:15860025-15860525 ( 68) GGGTGGGGA 1 chr15:66504639-66505139 ( 17) GGGAGTGGT 1 chr1:150268778-150269278 ( 82) GGGTGGGGA 1 chr11:59557318-59557818 ( 66) GGGCGGGAC 1 chr1:224615783-224616283 ( 80) GGGCGGGAC 1 chr18:35497783-35498283 ( 84) GGGCGTTGT 1 chr9:135967565-135968065 ( 67) GGGCGTGTT 1 chr17:51121700-51122200 ( 51) GGGCGTTGT 1 chr22:39520180-39520680 ( 26) GGGCGTAGC 1 chr22:29306049-29306549 ( 41) GGGCGGGAC 1 chr3:11846636-11847136 ( 55) GGGCGTAGC 1 chr1:61724948-61725448 ( 44) GGGCGAGGT 1 chr17:8138725-8139225 ( 78) GGGCGTGTT 1 chr1:45303819-45304319 ( 77) GGGTGGTGC 1 chr6:10694464-10694964 ( 24) GGGCGTAGC 1 chr1:111755564-111756064 ( 52) GGGCGTGTT 1 chr5:40835046-40835546 ( 34) GGGCGCGGT 1 chr16:23149339-23149839 ( 47) GGGCGCGGT 1 chr12:48716917-48717417 ( 32) GGGCGCGGT 1 chr17:75905060-75905560 ( 48) GGGCGCGGT 1 chr5:150449690-150450190 ( 71) GGGTGTAGC 1 chr1:31387499-31387999 ( 59) GGGTGAGGT 1 chr22:37686127-37686627 ( 16) GGGTGTAGC 1 chr1:62783603-62784103 ( 5) GGGCGTGAT 1 chr10:74825653-74826153 ( 7) GGGTGTGTT 1 chr3:168096018-168096518 ( 12) GGGTGAGGT 1 chr19:41310145-41310645 ( 43) GGGTGCGGT 1 chr5:176388757-176389257 ( 23) GGGTGCGGT 1 chr1:208184288-208184788 ( 14) GGGTGTGAT 1 chr7:135232679-135233179 ( 53) GGGCGGAGC 1 chr22:41468755-41469255 ( 36) GGGCGGAGC 1 chr15:65869086-65869586 ( 88) GGGCGGTGT 1 chr20:58650898-58651398 ( 3) GGGCGGAGC 1 chr6:49463024-49463524 ( 44) GGGCGGTGT 1 chr19:57240416-57240916 ( 44) GGGCGGTGT 1 chr12:54288422-54288922 ( 69) GGGCGGGTT 1 chr12:49060567-49061067 ( 34) GGGCGGGAT 1 chr10:72354700-72355200 ( 81) GGGCGCGGA 1 chr1:26432086-26432586 ( 67) GGGCGCGTC 1 chr5:1633752-1634252 ( 45) GGGCGTTAC 1 chr10:75402418-75402918 ( 52) GGGTGCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 9.48358 E= 1.6e-087 -1465 -1465 172 -1465 -1465 -1465 172 -1465 -1465 -1465 172 -1465 -195 107 -1465 67 -1465 -1465 172 -1465 -195 -197 49 118 -265 -1465 157 -156 -184 -1465 152 -148 -174 128 -1465 5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 257 E= 1.6e-087 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050584 0.638132 0.000000 0.311284 0.000000 0.000000 1.000000 0.000000 0.050584 0.077821 0.428016 0.443580 0.031128 0.000000 0.902724 0.066148 0.054475 0.000000 0.875486 0.070039 0.058366 0.739300 0.000000 0.202335 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGKGGC MEME-2 regular expression -------------------------------------------------------------------------------- GGG[CT]G[TG]GG[CT] -------------------------------------------------------------------------------- Time 1043.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGRVRRRRRGRSAGRGARRGR MEME-3 width = 22 sites = 126 llr = 1290 E-value = 9.2e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 24252325352328:3263314 pos.-specific C ::2:3:2::1113::::1:::: probability G 8564555563555296736585 matrix T :::112111:21::111::11: bits 2.4 2.1 1.9 1.6 * Relative 1.4 * Entropy 1.2 * ** (14.8 bits) 0.9 * ** * 0.7 ** * *** ****** ** 0.5 **** * *** ********* 0.2 ********************** 0.0 ---------------------- Multilevel GGGAGGGGGAGGGAGGGAGGGG consensus A GCAAAAGAAC A GAA A sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:56079832-56080332 - 52 1.06e-11 GTGTGTGTGA GAGAGAGAGAGAGAGGGAGGGA GGAACGCAGA chr1:155244573-155245073 + 77 3.53e-11 gagagcgagc gagagagagagagagagagaga gg chr17:48728679-48729179 - 1 3.53e-11 GAGACAGAGA GAGAGAGAGAGAGAGAGAGAGA chr10:75402418-75402918 + 66 1.44e-10 GCGACTTGAa gggaaaaagagagagggagaga gagacggaga chr1:234723906-234724406 + 15 2.16e-10 gagagagaga gagagagaaatggagggagagg gagggaggaa chr22:20496079-20496579 - 76 3.18e-10 GAT GAGAGGGGGAGACAGGGAGGGA GTGAATGAGT chr5:37371034-37371534 + 56 6.41e-10 agggaaggga gggagggaaaggaagggaagga taaaggggag chr11:120346987-12034748 - 48 1.63e-09 GAGAGAGAGA GAGAGAGAGAAACAGAGAGAGA CAGAGAGAAA chr8:26513649-26514149 - 69 2.85e-09 GGCTGGAGGG GAGGGAAGGAGAGAGAGAGGGG AGGGCGGCAC chr17:45148299-45148799 + 49 3.72e-09 gaggagctgt gggaagggggaggagggaggga ggaaaagagg chr19:40602308-40602808 - 68 4.80e-09 GGGAAAGAGT GAAAGAAAGAGGGAGGAAGGGG AGGAGAGAGG chr14:103520902-10352140 - 38 6.14e-09 CGGCGAGGAG GAGGAGGAGGAGGAGGGAGGGG CCGGCCGCGC chrX:41333185-41333685 - 40 1.24e-08 GAGAACAGAG GGAAGGGGAGGAGAGGGAGGGA AAAGAGGGGA chr19:34999895-35000395 - 35 2.89e-08 GGAAAGCAGA GGGGCAGAGAGACAGAGAAGGA AACAAAGAGA chr1:45521705-45522205 + 53 5.20e-08 GGGGGTGCCG GAGGAGGAGAGAGAGGAGGGGG ATGTGGCCCG chr5:10353459-10353959 - 78 6.28e-08 G GGGAGAGGGAGAGGGAGAGAGG CTGACAGAAA chr19:38336532-38337032 + 38 1.28e-07 GGTGAAGAGC AAGAGTGGAATACAGGGAGGGG GCGGAATAAG chr10:21525346-21525846 + 78 1.28e-07 CAAGAGGAAG GGGAGGAGAGAGGAGAGGGAGG A chr16:29816057-29816557 - 5 2.90e-07 CTTTCCGAAA GAGGGAAAGGGGGAGGAGAGGG ACGG chrX:14029587-14030087 + 53 2.90e-07 TTTCCTTGGA GAGACAGAGGGGGAGTGGGGGA CGCGAGGGAG chr7:100167775-100168275 + 68 3.94e-07 gagaaacaga gagagagagacagagggacaga gagaCTATGA chr22:39520180-39520680 + 55 4.58e-07 CGGTTGGGGC GTCAAagggagggagggaaggg agcgggcggg chr12:6765951-6766451 - 53 5.31e-07 GTGGGGATAG GAGGATGAAAGCGAGGGGAGGG AGAGCTAGGG chr12:54359085-54359585 + 72 6.13e-07 ATCTGCCTGT AAGAGACAGCGAAAGAGAGAGA GCGTGCG chr5:176388757-176389257 + 64 8.14e-07 AGTGATGTCG GAGGGAAGGAAGTAGAGAAGGA CCAGAGCGCT chr16:234325-234825 + 40 8.14e-07 GAGGAGGAGG GGAGCGAGGACGCAGAGAAGGA GGGGAAAGAG chr18:74657586-74658086 - 61 8.14e-07 AGAGGCTGAG AAGACAGGGAGGAAGGAGAGGA TGGGGAGGAA chr17:35587234-35587734 + 39 9.34e-07 CTAATTGACG GGGTCGGGGACGGAGAGAAGGG TAACACCAGG chr14:64986720-64987220 - 61 9.34e-07 GACCAGACGG GGGAGGAAGATGGAGGGCAATA GTAGGTGAAA chr17:7836717-7837217 - 52 1.07e-06 CTAAGACCAC GGGAAGGGAGAGGGGAAAGAGA TGGCACGGGA chr12:12891183-12891683 - 75 1.22e-06 AAGG AGGGGGAGGGTCGAGGGAGAGG ACACGCCTAT chr15:43185120-43185620 + 19 1.22e-06 CGGGCCTCGT GGCGGGAGGAGGCAGGGCAGGG CCTCTGGGAC chr8:10839748-10840248 + 14 1.22e-06 GGGCAACCTG GGGAGGTGACGGGAGAAAGAGG GACTGAGGGG chr5:150449690-150450190 + 2 1.40e-06 G GGAGAGCGAAAAGAGGTAGAGG GCTGGTTGTC chr21:25607274-25607774 - 30 1.40e-06 TTCGGTTTCC GGGGGAGGAGGGCGGAGAAGGA CTTGCGCGCG chr5:134226035-134226535 + 59 1.40e-06 CCGGAGGGCG GGGTGGTGGGGGAAGGGAAGGA TGGAGCTGGA chr1:153566401-153566901 - 56 1.40e-06 GGCTGAGGTA GAGGGGCTGGGGGAGGGGAAGA AGCTACTCGA chr10:74825653-74826153 + 65 1.59e-06 CGCCcgggac gggacgggacgggagagagggt ggaggagggg chr1:156572299-156572799 - 22 1.81e-06 TCAAACCTGG AAGAAGGAGGAACATGGAGAGG AGAGCAGCGG chr16:29943967-29944467 + 57 1.81e-06 actgtaacct gagatgaagatacagtaagagg agtttatatg chr19:39410128-39410628 - 2 2.05e-06 GGGTGCAGAG GAGGAAGTGAAAAAGAGGAGGA A chr1:111755564-111756064 - 25 2.32e-06 CGCCCGGCCT GGAAGTGGAAGAAAGGGACGGG AGTCGGAGGC chr6:110958526-110959026 + 77 2.62e-06 GAGTCCAGAG GACGGAGAAGACGAGGAAGAGG AG chr12:56158192-56158692 + 46 2.62e-06 GGGCAGGATT GGGGACGAGAGGCAGGAAGAGA CGGGTGGGGG chr1:153544916-153545416 - 32 2.96e-06 ACCCAGTTCT GGGAGGGAAAAGAATGGCAAGG GCGGGGCCTT chr12:389111-389611 - 74 2.96e-06 GCCGG GGAAGAGAAGAAGAAGGAAAGG CCAGACACAC chr15:59953507-59954007 - 56 3.33e-06 ACATAATCCA GGCAAACAAAGGCAGGGGAAAG ATATTGATTT chr10:72354700-72355200 + 7 3.33e-06 GGAACC AGAACGCGGAACCAGGGAGGGG GAGGCCGGGC chr4:77075929-77076429 + 56 3.75e-06 GGAAGTCGTT GGCACTAGGATGGAAGGAGGGA GGACGTTTTC chr1:233326961-233327461 - 50 3.75e-06 AAATTAAGCC AAAGGTAAGACTGAGGGAGGGG ACGCTTCTCC chr5:93582517-93583017 - 12 4.21e-06 CCCCAGAGGG GGAAGGGATGACGAGGGGGAGA ACGCCTAGCG chr19:30391889-30392389 + 23 4.21e-06 CCAGGACTCT GAGGGGAGAAGGGAGTGAGTGT CTCCTCTTTC chr14:36835050-36835550 - 75 4.72e-06 TATT GAAATGTGGGCAGAGAGAGGGA GTAATTTGTT chr13:40770995-40771495 - 35 5.28e-06 GTAGCCCACC GGAGCGCAAAGGGGGAGGAAGG CGCCAGGCCG chr6:31547279-31547779 - 70 5.90e-06 GCGCAAGCA GAGACGCAGGTGGAGGACGGAA GTGAACTGTG chr5:10441317-10441817 - 64 5.90e-06 CCTGCTAGGA GGGAAGCGGGTTAAGTGAAGGG GCTGATCGCC chr1:40257846-40258346 + 77 6.58e-06 CACTGCCAGC AGCGCGCAGAGGGAGGGATGGG GG chr19:48170294-48170794 + 65 6.58e-06 TCTGAGGAGT GACTGGCAGGGAAAGAGGAGGA ATCGGTGGAA chr1:25247293-25247793 - 62 7.33e-06 CGCGGCTTGG GGAGGGAGGAGGCAGGGCGGTG GTTGGGCAAG chr1:16644367-16644867 - 67 7.33e-06 CGCGGCGGCC GAGGCTCGGGGTGAGTGAGGGG CGGCAGGGCT chr1:31938332-31938832 + 68 7.33e-06 CCATGTGATC GGGGAGGGAAGGCAGAACGTGG CCTGGGGAGT chr20:33709923-33710423 - 71 8.16e-06 TCATTGTA GAGGTGGGAGTGGGGGAAGGGG TGTGGTTCTG chr6:15956303-15956803 - 25 8.16e-06 CCCACCCCAA GGGAAGAATCAGGAGAGAAGTA ATGCAACCCC chr1:54715611-54716111 + 5 9.07e-06 CGCT GCCGGGAGGATTGAGGGAAGGG AACCCGCGCC chr16:18801236-18801736 - 15 9.07e-06 CTGCATCCCC GAGACGATGGCGGAGGGAGATA ATCGCAGCAC chr19:40806707-40807207 - 26 9.07e-06 GAAGCTACTA AAGACAGGAAAAGGGGGAAAGT GTTCATTACA chr19:35628730-35629230 - 5 9.07e-06 GGGAATATAG GCCAATCAGAGTGAGAGAAGGA CACA chr11:115581297-11558179 + 25 1.01e-05 GCTTGCCTGG GGCACAGGGGGTCAGGGAATGG ATGGGAGGTC chr17:50200504-50201004 - 50 1.01e-05 CTCTAGATCT GGAAAGTAAAGCCAGGGATGGG GCAGCCCAAG chr17:28951975-28952475 - 67 1.01e-05 GCAGATCTCA GGGACAGTGGTGAAGAGAGGGT GGTAACGGGC chrX:118495415-118495915 - 1 1.01e-05 GTCTGATGGG GAAGGGTGTGTAGAGGGGGAGG chr12:105330233-10533073 + 4 1.11e-05 AAA GAAAAGCAAAGACAAGGCGAGG AGGATGCTGA chr20:63941617-63942117 + 61 1.11e-05 AGGAAAGGGG GTGATGCAGGGGCAGGAAGAGG AAAGCGACAG chr19:9621163-9621663 + 19 1.11e-05 GGTTGGCTCA GGGAGGGGGATGCAGAACTAGG TCCAGAGAAA chr16:2267850-2268350 - 23 1.11e-05 CGGCCTCGGC GGCTGAGGAAAGCAGGAGGAGG TGGCGGCGGC chr19:40603618-40604118 - 74 1.36e-05 GTGCG GCGGGGTAAACAAAGAGAGAGG TGCGGCGGGG chr1:183471842-183472342 + 25 1.36e-05 GGAAATCGGC AGGAGTGATAAGAAGGGGGAAG ACTTTGAGTG chr16:2015301-2015801 - 39 1.36e-05 AACACTTTGG GAGGCTGAGGCGGAGTTAGAGA CCAGCCTGGG chr17:80147121-80147621 + 33 1.51e-05 CCAGTTCCTT ACGAAAGGGATGGAGGGGGTGG TACTTCTAAA chr12:57547011-57547511 + 69 1.51e-05 CCGGGATTGG GGAGAACGAGGCCAGGGAATGA GGTAATGGCC chr17:7242704-7243204 + 70 1.66e-05 AGGGACTGGA GAGGAGGTTGGAAAGGTAGGGA CTACGCCAG chr12:95217714-95218214 + 22 1.66e-05 TGAGAAGGAC GAGACGGAAATCGAGGAAGCAA GGCGTTCCCG chr1:155050343-155050843 - 21 1.83e-05 CGCCAGCCCG GGAGCGAGGCGGGAAAGAAGGG GAACTGGACA chr6:54879193-54879693 + 75 1.83e-05 TGGGTCAGGT GAGTGGAAGAAGGAGAAACTGG GAAG chr6:87155192-87155692 - 60 2.21e-05 AGGGCCCGAT GGGGAAGATATGGGGGTGGGGA GAGTGGCGCG chr19:17337103-17337603 - 5 2.42e-05 CAGCGAGGCT GACAATAGGAATAAGGAATGGA AGAA chr9:132944415-132944915 - 61 2.42e-05 CTTTCGAGAA GGAGGGGAGGTCCGGAGGGGGA CTCTTTTTCG chr5:56123720-56124220 + 2 2.42e-05 C AGCAGGGGGCTAAAGGGCAGGG CCCATGATTC chr19:39125801-39126301 + 15 2.66e-05 CCGGGGTCAA AGGTCACTGGTGGAGGGAAGGG TCGCGTCCGA chr22:46013739-46014239 - 56 2.66e-05 GGAGCGGCGG AAGATGCGGAGATAGAGGGAGG TTCCCAGGAA chr1:31944238-31944738 - 7 2.91e-05 ATTCCGGAAG AGAGATTAGAGGCAGGGGATGG GTGGGG chr7:133492163-133492663 + 24 2.91e-05 AGTTTTTATG GAGTGTTAGATAGGGGTAAAGA TAGCATTTCA chr19:40443112-40443612 - 16 3.18e-05 ATGCCCTGAG GGAGAGCGGGGTGAGGGGGGTG GCTCGTCCCC chr12:56126084-56126584 - 27 3.18e-05 GTGATAAGCA GTAAGTGGACAACAGGAAGGGA TGCCCATTTG chr3:194134802-194135302 - 3 3.47e-05 GCGCGCCCCG GGGGCAGGGAGGCGGGGGGCGG CG chr5:96935754-96936254 - 8 3.47e-05 CTGCAGAAAG AGCGAGGGAAGCAAGAGGGAAA AGCACAG chr10:17201440-17201940 - 52 3.47e-05 CCAGAGGCTG AGGGAGCGGCGCGATGGAGGGA GGAGGAGCGA chr8:22574301-22574801 + 10 3.47e-05 CCGCTAGGG GGCAGGAAGGAGGAGAGCAAAT CCAATTCCCT chr17:62423596-62424096 - 1 3.79e-05 GCGGAGTCTG GGCGGGAAAAAGGGTGGCGGGA chr1:46132531-46133031 - 24 3.79e-05 CCGGTACATC GAGGCGGGACGGCGTGGAAGGG GCGGTGGTGA chr19:44954811-44955311 + 15 3.79e-05 CGAAAAGGAC GCGAAGAATCGGCAGGGAGAAG CGGACAGGAT chr7:128476409-128476909 - 51 3.79e-05 GTGGAGTCTG GGCGGGAAAAAGGGTGGCGGGA CAGGGCGGTC chr10:15856359-15856859 - 25 4.13e-05 GCTGCATTCT AAAACATGAAAGCAGATGAGGG TTGTAGTTTG chr5:154682395-154682895 + 43 4.50e-05 GTACCCACGG GACTCTCGAAGTGGGGGAGGGG AAGGGGCGCA chr15:31215364-31215864 + 23 4.50e-05 GCCTGTGGCT GACACCAGGGGGCAGGGCGGGG CGGCGGGGAC chr22:37686127-37686627 + 79 4.50e-05 GGCCGCAACA AGAAGAAGAAGCGAGATGGTGA chr11:66001978-66002478 - 2 4.50e-05 AGAGTTAGAA GACGGACAAGGGAGGGGACGGG A chr17:13601943-13602443 - 14 4.50e-05 CCACTGGAAG GGGGCGAAGCCGCGGGGAGGAA TGGGGGACAC chr19:35154633-35155133 - 54 4.89e-05 GCGTGGATGG GGGGCGGAGAGGAGCGGAAGGG GTCAAACCCC chr7:129224503-129225003 - 3 4.89e-05 TCCACTAAGT GAGATTCAGCCGAGGAGAGGGA GC chr11:47578725-47579225 - 1 4.89e-05 TCCGGGATGA AAGGAGGGAACGCAGGTGAGAA chr5:177425897-177426397 - 9 4.89e-05 CAATCAGGAG GGCGCACATCGAAAGAGGGAGA GACAGGGA chr1:21334676-21335176 - 6 6.26e-05 GTAGAGCATG GACTGTAGGGGGCAGGAGGGAG GCAGG chr19:17334709-17335209 - 30 6.79e-05 GTAGGCGGGC GAGAAGGAAACCCAGAAAACAA CACGGGCGGA chr2:3574982-3575482 - 77 7.35e-05 GC AAGAGGCGGAAACAGCGCGAGG AGGAGGGCGG chr4:77156779-77157279 - 45 7.35e-05 CCTCCCGCCT GGCGCTAGGGCGGAGAGCGGAA TCTGGGCGTC chr19:49712352-49712852 + 54 7.95e-05 TCAGGAGAAG GGCGTGGTTAGGGAGAAGGAGG CCCGGATTTA chr5:40835046-40835546 + 73 8.59e-05 TCGTCGTAGT GTAGGTGGGGTCAAGAGGAGGA TGCGGT chr1:228459062-228459562 - 42 8.59e-05 CCTCGCCCAT GGGGGGCGGGTAGGGTTGGGGA GGTTGGCACA chr3:9749891-9750391 + 36 8.59e-05 CGAGGCATGC AGGAGGTGGAGGAATTAAGTGA AACAGGGAAG chr10:101569981-10157048 - 55 8.59e-05 TCTCGGGCGT GAGAGTGGAGTGGGGTGGAGTG GGGTGGGGCG chr19:35612572-35613072 + 61 9.27e-05 TGGGTTGCTG GGCGGTCGAAGAGATGGGGGTG CCCGTGGCGG chr1:155017203-155017703 - 39 1.00e-04 TCTGGCCCCG GGGAGGGAGCGGCGGGAACAAG ACATTCCCTG chr19:46600824-46601324 + 43 1.44e-04 CCCGGGAGGC GGGGCGCGCGGCGAGGGAAAGT AGTCCGGCGA chr3:168096018-168096518 + 78 1.55e-04 GTTCTCGTTC GGAACGCACGTGGAGAGCGGAG T chr16:11915817-11916317 - 12 2.18e-04 GAGAACTACC GAGGCGAAGGTACGGGTGGCGG CGAGGGGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:56079832-56080332 1.1e-11 51_[-3]_27 chr1:155244573-155245073 3.5e-11 76_[+3]_2 chr17:48728679-48729179 3.5e-11 [-3]_78 chr10:75402418-75402918 1.4e-10 65_[+3]_13 chr1:234723906-234724406 2.2e-10 14_[+3]_64 chr22:20496079-20496579 3.2e-10 75_[-3]_3 chr5:37371034-37371534 6.4e-10 55_[+3]_23 chr11:120346987-12034748 1.6e-09 47_[-3]_31 chr8:26513649-26514149 2.9e-09 68_[-3]_10 chr17:45148299-45148799 3.7e-09 48_[+3]_30 chr19:40602308-40602808 4.8e-09 67_[-3]_11 chr14:103520902-10352140 6.1e-09 37_[-3]_41 chrX:41333185-41333685 1.2e-08 39_[-3]_39 chr19:34999895-35000395 2.9e-08 34_[-3]_44 chr1:45521705-45522205 5.2e-08 52_[+3]_26 chr5:10353459-10353959 6.3e-08 77_[-3]_1 chr19:38336532-38337032 1.3e-07 37_[+3]_41 chr10:21525346-21525846 1.3e-07 77_[+3]_1 chr16:29816057-29816557 2.9e-07 4_[-3]_74 chrX:14029587-14030087 2.9e-07 52_[+3]_26 chr7:100167775-100168275 3.9e-07 67_[+3]_11 chr22:39520180-39520680 4.6e-07 54_[+3]_24 chr12:6765951-6766451 5.3e-07 52_[-3]_26 chr12:54359085-54359585 6.1e-07 71_[+3]_7 chr5:176388757-176389257 8.1e-07 63_[+3]_15 chr16:234325-234825 8.1e-07 39_[+3]_39 chr18:74657586-74658086 8.1e-07 60_[-3]_18 chr17:35587234-35587734 9.3e-07 38_[+3]_40 chr14:64986720-64987220 9.3e-07 60_[-3]_18 chr17:7836717-7837217 1.1e-06 51_[-3]_27 chr12:12891183-12891683 1.2e-06 74_[-3]_4 chr15:43185120-43185620 1.2e-06 18_[+3]_60 chr8:10839748-10840248 1.2e-06 13_[+3]_65 chr5:150449690-150450190 1.4e-06 1_[+3]_77 chr21:25607274-25607774 1.4e-06 29_[-3]_49 chr5:134226035-134226535 1.4e-06 58_[+3]_20 chr1:153566401-153566901 1.4e-06 55_[-3]_23 chr10:74825653-74826153 1.6e-06 64_[+3]_14 chr1:156572299-156572799 1.8e-06 21_[-3]_57 chr16:29943967-29944467 1.8e-06 56_[+3]_22 chr19:39410128-39410628 2e-06 1_[-3]_77 chr1:111755564-111756064 2.3e-06 24_[-3]_54 chr6:110958526-110959026 2.6e-06 76_[+3]_2 chr12:56158192-56158692 2.6e-06 45_[+3]_33 chr1:153544916-153545416 3e-06 31_[-3]_47 chr12:389111-389611 3e-06 73_[-3]_5 chr15:59953507-59954007 3.3e-06 55_[-3]_23 chr10:72354700-72355200 3.3e-06 6_[+3]_72 chr4:77075929-77076429 3.7e-06 55_[+3]_23 chr1:233326961-233327461 3.7e-06 49_[-3]_29 chr5:93582517-93583017 4.2e-06 11_[-3]_67 chr19:30391889-30392389 4.2e-06 22_[+3]_56 chr14:36835050-36835550 4.7e-06 74_[-3]_4 chr13:40770995-40771495 5.3e-06 34_[-3]_44 chr6:31547279-31547779 5.9e-06 69_[-3]_9 chr5:10441317-10441817 5.9e-06 63_[-3]_15 chr1:40257846-40258346 6.6e-06 76_[+3]_2 chr19:48170294-48170794 6.6e-06 64_[+3]_14 chr1:25247293-25247793 7.3e-06 61_[-3]_17 chr1:16644367-16644867 7.3e-06 66_[-3]_12 chr1:31938332-31938832 7.3e-06 67_[+3]_11 chr20:33709923-33710423 8.2e-06 70_[-3]_8 chr6:15956303-15956803 8.2e-06 24_[-3]_54 chr1:54715611-54716111 9.1e-06 4_[+3]_74 chr16:18801236-18801736 9.1e-06 14_[-3]_64 chr19:40806707-40807207 9.1e-06 25_[-3]_53 chr19:35628730-35629230 9.1e-06 4_[-3]_74 chr11:115581297-11558179 1e-05 24_[+3]_54 chr17:50200504-50201004 1e-05 49_[-3]_29 chr17:28951975-28952475 1e-05 66_[-3]_12 chrX:118495415-118495915 1e-05 [-3]_78 chr12:105330233-10533073 1.1e-05 3_[+3]_75 chr20:63941617-63942117 1.1e-05 60_[+3]_18 chr19:9621163-9621663 1.1e-05 18_[+3]_60 chr16:2267850-2268350 1.1e-05 22_[-3]_56 chr19:40603618-40604118 1.4e-05 73_[-3]_5 chr1:183471842-183472342 1.4e-05 24_[+3]_54 chr16:2015301-2015801 1.4e-05 38_[-3]_40 chr17:80147121-80147621 1.5e-05 32_[+3]_46 chr12:57547011-57547511 1.5e-05 68_[+3]_10 chr17:7242704-7243204 1.7e-05 69_[+3]_9 chr12:95217714-95218214 1.7e-05 21_[+3]_57 chr1:155050343-155050843 1.8e-05 20_[-3]_58 chr6:54879193-54879693 1.8e-05 74_[+3]_4 chr6:87155192-87155692 2.2e-05 59_[-3]_19 chr19:17337103-17337603 2.4e-05 4_[-3]_74 chr9:132944415-132944915 2.4e-05 60_[-3]_18 chr5:56123720-56124220 2.4e-05 1_[+3]_77 chr19:39125801-39126301 2.7e-05 14_[+3]_64 chr22:46013739-46014239 2.7e-05 55_[-3]_23 chr1:31944238-31944738 2.9e-05 6_[-3]_72 chr7:133492163-133492663 2.9e-05 23_[+3]_55 chr19:40443112-40443612 3.2e-05 15_[-3]_63 chr12:56126084-56126584 3.2e-05 26_[-3]_52 chr3:194134802-194135302 3.5e-05 2_[-3]_76 chr5:96935754-96936254 3.5e-05 7_[-3]_71 chr10:17201440-17201940 3.5e-05 51_[-3]_27 chr8:22574301-22574801 3.5e-05 9_[+3]_69 chr17:62423596-62424096 3.8e-05 [-3]_78 chr1:46132531-46133031 3.8e-05 23_[-3]_55 chr19:44954811-44955311 3.8e-05 14_[+3]_64 chr7:128476409-128476909 3.8e-05 50_[-3]_28 chr10:15856359-15856859 4.1e-05 24_[-3]_54 chr5:154682395-154682895 4.5e-05 42_[+3]_36 chr15:31215364-31215864 4.5e-05 22_[+3]_56 chr22:37686127-37686627 4.5e-05 78_[+3] chr11:66001978-66002478 4.5e-05 1_[-3]_77 chr17:13601943-13602443 4.5e-05 13_[-3]_65 chr19:35154633-35155133 4.9e-05 53_[-3]_25 chr7:129224503-129225003 4.9e-05 2_[-3]_76 chr11:47578725-47579225 4.9e-05 [-3]_78 chr5:177425897-177426397 4.9e-05 8_[-3]_70 chr1:21334676-21335176 6.3e-05 5_[-3]_73 chr19:17334709-17335209 6.8e-05 29_[-3]_49 chr2:3574982-3575482 7.3e-05 76_[-3]_2 chr4:77156779-77157279 7.3e-05 44_[-3]_34 chr19:49712352-49712852 7.9e-05 53_[+3]_25 chr5:40835046-40835546 8.6e-05 72_[+3]_6 chr1:228459062-228459562 8.6e-05 41_[-3]_37 chr3:9749891-9750391 8.6e-05 35_[+3]_43 chr10:101569981-10157048 8.6e-05 54_[-3]_24 chr19:35612572-35613072 9.3e-05 60_[+3]_18 chr1:155017203-155017703 0.0001 38_[-3]_40 chr19:46600824-46601324 0.00014 42_[+3]_36 chr3:168096018-168096518 0.00015 77_[+3]_1 chr16:11915817-11916317 0.00022 11_[-3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGRVRRRRRGRSAGRGARRGR width=22 seqs=126 chr12:56079832-56080332 ( 52) GAGAGAGAGAGAGAGGGAGGGA 1 chr1:155244573-155245073 ( 77) GAGAGAGAGAGAGAGAGAGAGA 1 chr17:48728679-48729179 ( 1) GAGAGAGAGAGAGAGAGAGAGA 1 chr10:75402418-75402918 ( 66) GGGAAAAAGAGAGAGGGAGAGA 1 chr1:234723906-234724406 ( 15) GAGAGAGAAATGGAGGGAGAGG 1 chr22:20496079-20496579 ( 76) GAGAGGGGGAGACAGGGAGGGA 1 chr5:37371034-37371534 ( 56) GGGAGGGAAAGGAAGGGAAGGA 1 chr11:120346987-12034748 ( 48) GAGAGAGAGAAACAGAGAGAGA 1 chr8:26513649-26514149 ( 69) GAGGGAAGGAGAGAGAGAGGGG 1 chr17:45148299-45148799 ( 49) GGGAAGGGGGAGGAGGGAGGGA 1 chr19:40602308-40602808 ( 68) GAAAGAAAGAGGGAGGAAGGGG 1 chr14:103520902-10352140 ( 38) GAGGAGGAGGAGGAGGGAGGGG 1 chrX:41333185-41333685 ( 40) GGAAGGGGAGGAGAGGGAGGGA 1 chr19:34999895-35000395 ( 35) GGGGCAGAGAGACAGAGAAGGA 1 chr1:45521705-45522205 ( 53) GAGGAGGAGAGAGAGGAGGGGG 1 chr5:10353459-10353959 ( 78) GGGAGAGGGAGAGGGAGAGAGG 1 chr19:38336532-38337032 ( 38) AAGAGTGGAATACAGGGAGGGG 1 chr10:21525346-21525846 ( 78) GGGAGGAGAGAGGAGAGGGAGG 1 chr16:29816057-29816557 ( 5) GAGGGAAAGGGGGAGGAGAGGG 1 chrX:14029587-14030087 ( 53) GAGACAGAGGGGGAGTGGGGGA 1 chr7:100167775-100168275 ( 68) GAGAGAGAGACAGAGGGACAGA 1 chr22:39520180-39520680 ( 55) GTCAAAGGGAGGGAGGGAAGGG 1 chr12:6765951-6766451 ( 53) GAGGATGAAAGCGAGGGGAGGG 1 chr12:54359085-54359585 ( 72) AAGAGACAGCGAAAGAGAGAGA 1 chr5:176388757-176389257 ( 64) GAGGGAAGGAAGTAGAGAAGGA 1 chr16:234325-234825 ( 40) GGAGCGAGGACGCAGAGAAGGA 1 chr18:74657586-74658086 ( 61) AAGACAGGGAGGAAGGAGAGGA 1 chr17:35587234-35587734 ( 39) GGGTCGGGGACGGAGAGAAGGG 1 chr14:64986720-64987220 ( 61) GGGAGGAAGATGGAGGGCAATA 1 chr17:7836717-7837217 ( 52) GGGAAGGGAGAGGGGAAAGAGA 1 chr12:12891183-12891683 ( 75) AGGGGGAGGGTCGAGGGAGAGG 1 chr15:43185120-43185620 ( 19) GGCGGGAGGAGGCAGGGCAGGG 1 chr8:10839748-10840248 ( 14) GGGAGGTGACGGGAGAAAGAGG 1 chr5:150449690-150450190 ( 2) GGAGAGCGAAAAGAGGTAGAGG 1 chr21:25607274-25607774 ( 30) GGGGGAGGAGGGCGGAGAAGGA 1 chr5:134226035-134226535 ( 59) GGGTGGTGGGGGAAGGGAAGGA 1 chr1:153566401-153566901 ( 56) GAGGGGCTGGGGGAGGGGAAGA 1 chr10:74825653-74826153 ( 65) GGGACGGGACGGGAGAGAGGGT 1 chr1:156572299-156572799 ( 22) AAGAAGGAGGAACATGGAGAGG 1 chr16:29943967-29944467 ( 57) GAGATGAAGATACAGTAAGAGG 1 chr19:39410128-39410628 ( 2) GAGGAAGTGAAAAAGAGGAGGA 1 chr1:111755564-111756064 ( 25) GGAAGTGGAAGAAAGGGACGGG 1 chr6:110958526-110959026 ( 77) GACGGAGAAGACGAGGAAGAGG 1 chr12:56158192-56158692 ( 46) GGGGACGAGAGGCAGGAAGAGA 1 chr1:153544916-153545416 ( 32) GGGAGGGAAAAGAATGGCAAGG 1 chr12:389111-389611 ( 74) GGAAGAGAAGAAGAAGGAAAGG 1 chr15:59953507-59954007 ( 56) GGCAAACAAAGGCAGGGGAAAG 1 chr10:72354700-72355200 ( 7) AGAACGCGGAACCAGGGAGGGG 1 chr4:77075929-77076429 ( 56) GGCACTAGGATGGAAGGAGGGA 1 chr1:233326961-233327461 ( 50) AAAGGTAAGACTGAGGGAGGGG 1 chr5:93582517-93583017 ( 12) GGAAGGGATGACGAGGGGGAGA 1 chr19:30391889-30392389 ( 23) GAGGGGAGAAGGGAGTGAGTGT 1 chr14:36835050-36835550 ( 75) GAAATGTGGGCAGAGAGAGGGA 1 chr13:40770995-40771495 ( 35) GGAGCGCAAAGGGGGAGGAAGG 1 chr6:31547279-31547779 ( 70) GAGACGCAGGTGGAGGACGGAA 1 chr5:10441317-10441817 ( 64) GGGAAGCGGGTTAAGTGAAGGG 1 chr1:40257846-40258346 ( 77) AGCGCGCAGAGGGAGGGATGGG 1 chr19:48170294-48170794 ( 65) GACTGGCAGGGAAAGAGGAGGA 1 chr1:25247293-25247793 ( 62) GGAGGGAGGAGGCAGGGCGGTG 1 chr1:16644367-16644867 ( 67) GAGGCTCGGGGTGAGTGAGGGG 1 chr1:31938332-31938832 ( 68) GGGGAGGGAAGGCAGAACGTGG 1 chr20:33709923-33710423 ( 71) GAGGTGGGAGTGGGGGAAGGGG 1 chr6:15956303-15956803 ( 25) GGGAAGAATCAGGAGAGAAGTA 1 chr1:54715611-54716111 ( 5) GCCGGGAGGATTGAGGGAAGGG 1 chr16:18801236-18801736 ( 15) GAGACGATGGCGGAGGGAGATA 1 chr19:40806707-40807207 ( 26) AAGACAGGAAAAGGGGGAAAGT 1 chr19:35628730-35629230 ( 5) GCCAATCAGAGTGAGAGAAGGA 1 chr11:115581297-11558179 ( 25) GGCACAGGGGGTCAGGGAATGG 1 chr17:50200504-50201004 ( 50) GGAAAGTAAAGCCAGGGATGGG 1 chr17:28951975-28952475 ( 67) GGGACAGTGGTGAAGAGAGGGT 1 chrX:118495415-118495915 ( 1) GAAGGGTGTGTAGAGGGGGAGG 1 chr12:105330233-10533073 ( 4) GAAAAGCAAAGACAAGGCGAGG 1 chr20:63941617-63942117 ( 61) GTGATGCAGGGGCAGGAAGAGG 1 chr19:9621163-9621663 ( 19) GGGAGGGGGATGCAGAACTAGG 1 chr16:2267850-2268350 ( 23) GGCTGAGGAAAGCAGGAGGAGG 1 chr19:40603618-40604118 ( 74) GCGGGGTAAACAAAGAGAGAGG 1 chr1:183471842-183472342 ( 25) AGGAGTGATAAGAAGGGGGAAG 1 chr16:2015301-2015801 ( 39) GAGGCTGAGGCGGAGTTAGAGA 1 chr17:80147121-80147621 ( 33) ACGAAAGGGATGGAGGGGGTGG 1 chr12:57547011-57547511 ( 69) GGAGAACGAGGCCAGGGAATGA 1 chr17:7242704-7243204 ( 70) GAGGAGGTTGGAAAGGTAGGGA 1 chr12:95217714-95218214 ( 22) GAGACGGAAATCGAGGAAGCAA 1 chr1:155050343-155050843 ( 21) GGAGCGAGGCGGGAAAGAAGGG 1 chr6:54879193-54879693 ( 75) GAGTGGAAGAAGGAGAAACTGG 1 chr6:87155192-87155692 ( 60) GGGGAAGATATGGGGGTGGGGA 1 chr19:17337103-17337603 ( 5) GACAATAGGAATAAGGAATGGA 1 chr9:132944415-132944915 ( 61) GGAGGGGAGGTCCGGAGGGGGA 1 chr5:56123720-56124220 ( 2) AGCAGGGGGCTAAAGGGCAGGG 1 chr19:39125801-39126301 ( 15) AGGTCACTGGTGGAGGGAAGGG 1 chr22:46013739-46014239 ( 56) AAGATGCGGAGATAGAGGGAGG 1 chr1:31944238-31944738 ( 7) AGAGATTAGAGGCAGGGGATGG 1 chr7:133492163-133492663 ( 24) GAGTGTTAGATAGGGGTAAAGA 1 chr19:40443112-40443612 ( 16) GGAGAGCGGGGTGAGGGGGGTG 1 chr12:56126084-56126584 ( 27) GTAAGTGGACAACAGGAAGGGA 1 chr3:194134802-194135302 ( 3) GGGGCAGGGAGGCGGGGGGCGG 1 chr5:96935754-96936254 ( 8) AGCGAGGGAAGCAAGAGGGAAA 1 chr10:17201440-17201940 ( 52) AGGGAGCGGCGCGATGGAGGGA 1 chr8:22574301-22574801 ( 10) GGCAGGAAGGAGGAGAGCAAAT 1 chr17:62423596-62424096 ( 1) GGCGGGAAAAAGGGTGGCGGGA 1 chr1:46132531-46133031 ( 24) GAGGCGGGACGGCGTGGAAGGG 1 chr19:44954811-44955311 ( 15) GCGAAGAATCGGCAGGGAGAAG 1 chr7:128476409-128476909 ( 51) GGCGGGAAAAAGGGTGGCGGGA 1 chr10:15856359-15856859 ( 25) AAAACATGAAAGCAGATGAGGG 1 chr5:154682395-154682895 ( 43) GACTCTCGAAGTGGGGGAGGGG 1 chr15:31215364-31215864 ( 23) GACACCAGGGGGCAGGGCGGGG 1 chr22:37686127-37686627 ( 79) AGAAGAAGAAGCGAGATGGTGA 1 chr11:66001978-66002478 ( 2) GACGGACAAGGGAGGGGACGGG 1 chr17:13601943-13602443 ( 14) GGGGCGAAGCCGCGGGGAGGAA 1 chr19:35154633-35155133 ( 54) GGGGCGGAGAGGAGCGGAAGGG 1 chr7:129224503-129225003 ( 3) GAGATTCAGCCGAGGAGAGGGA 1 chr11:47578725-47579225 ( 1) AAGGAGGGAACGCAGGTGAGAA 1 chr5:177425897-177426397 ( 9) GGCGCACATCGAAAGAGGGAGA 1 chr1:21334676-21335176 ( 6) GACTGTAGGGGGCAGGAGGGAG 1 chr19:17334709-17335209 ( 30) GAGAAGGAAACCCAGAAAACAA 1 chr2:3574982-3575482 ( 77) AAGAGGCGGAAACAGCGCGAGG 1 chr4:77156779-77157279 ( 45) GGCGCTAGGGCGGAGAGCGGAA 1 chr19:49712352-49712852 ( 54) GGCGTGGTTAGGGAGAAGGAGG 1 chr5:40835046-40835546 ( 73) GTAGGTGGGGTCAAGAGGAGGA 1 chr1:228459062-228459562 ( 42) GGGGGGCGGGTAGGGTTGGGGA 1 chr3:9749891-9750391 ( 36) AGGAGGTGGAGGAATTAAGTGA 1 chr10:101569981-10157048 ( 55) GAGAGTGGAGTGGGGTGGAGTG 1 chr19:35612572-35613072 ( 61) GGCGGTCGAAGAGATGGGGGTG 1 chr1:155017203-155017703 ( 39) GGGAGGGAGCGGCGGGAACAAG 1 chr19:46600824-46601324 ( 43) GGGGCGCGCGGCGAGGGAAAGT 1 chr3:168096018-168096518 ( 78) GGAACGCACGTGGAGAGCGGAG 1 chr16:11915817-11916317 ( 12) GAGGCGAAGGTACGGGTGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.27477 E= 9.2e-082 -16 -1362 144 -1362 111 -294 74 -262 2 -62 99 -1362 138 -1362 47 -145 28 -26 57 -181 51 -426 85 -30 33 -45 57 -130 121 -1362 69 -181 70 -426 97 -145 149 -145 16 -1362 8 -156 69 2 55 -135 78 -145 -16 -9 78 -362 208 -1362 -80 -1362 -262 -526 156 -162 70 -526 99 -145 -4 -1362 126 -130 163 -126 -17 -1362 73 -294 99 -262 84 -326 85 -145 -82 -1362 145 -181 113 -1362 78 -204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 126 E= 9.2e-082 0.174603 0.000000 0.825397 0.000000 0.420635 0.039683 0.507937 0.031746 0.198413 0.198413 0.603175 0.000000 0.507937 0.000000 0.420635 0.071429 0.238095 0.253968 0.452381 0.055556 0.277778 0.015873 0.547619 0.158730 0.246032 0.222222 0.452381 0.079365 0.452381 0.000000 0.492063 0.055556 0.317460 0.015873 0.595238 0.071429 0.547619 0.111111 0.341270 0.000000 0.206349 0.103175 0.492063 0.198413 0.285714 0.119048 0.523810 0.071429 0.174603 0.285714 0.523810 0.015873 0.825397 0.000000 0.174603 0.000000 0.031746 0.007937 0.896825 0.063492 0.317460 0.007937 0.603175 0.071429 0.190476 0.000000 0.730159 0.079365 0.603175 0.126984 0.269841 0.000000 0.325397 0.039683 0.603175 0.031746 0.349206 0.031746 0.547619 0.071429 0.111111 0.000000 0.833333 0.055556 0.428571 0.000000 0.523810 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGRVRRRRRGRSAGRGARRGR MEME-3 regular expression -------------------------------------------------------------------------------- G[GA]G[AG][GCA][GA][GAC][GA][GA][AG][GA][GA][GC]AG[GA]G[AG][GA][GA]G[GA] -------------------------------------------------------------------------------- Time 1490.51 secs. ******************************************************************************** ******************************************************************************** MOTIF MAHAMAMAHAYAMAHAMAMAMA MEME-4 width = 22 sites = 50 llr = 668 E-value = 3.4e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6738485646:94837384867 pos.-specific C 424241322:51413:5:4:31 probability G :::11::2121:::11::111: matrix T :14:112:324:2232221::2 bits 2.4 2.1 1.9 * 1.6 * * Relative 1.4 * * * * Entropy 1.2 * * * * * * * * (19.3 bits) 0.9 ** * * * * * * * * * 0.7 ** * *** *** * * * *** 0.5 **** *** ***** *** *** 0.2 ********************** 0.0 ---------------------- Multilevel AACAAAAAAACAAACACAAAAA consensus C T C CCTTT C T A C C sequence A T C A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:35881941-35882441 + 12 7.73e-13 accctgtcta aaaataaaaataaaaataaaaa ataaataaat chr5:34182251-34182751 + 53 3.68e-12 taaataaata aataaataaataaataaaaaat CTGGGCCTCC chr17:75368291-75368791 - 36 5.88e-12 ATCTTTAAAA AAAAAAACAACAAAAAAAAAAA CAAACGCCTG chr1:28648546-28649046 - 59 2.92e-10 CCTCTAAAAA AAAAAAAAAACACACACAGAAT CTCTTTTCAG chr19:4247411-4247911 - 67 1.23e-09 AAAAAAACAA AACACACACACACACACACACA CACACACACA chr5:160008634-160009134 + 51 1.42e-09 taaataaata aataaataaataaataaataGT GAAACGAACA chr1:6075672-6076172 - 69 1.91e-09 GCTATGTCCT AATAAAACTTTATTTATACAAA CAGTGTGCAG chr10:88342637-88343137 - 58 2.56e-09 GCTGTGTTCT AATAAAACTTTATTTACAAACA CAAGTGGCAG chr17:40140132-40140632 + 75 4.48e-09 cacacacaca cacacacacacacacacacaca caGC chr19:35819850-35820350 + 39 4.48e-09 cacacacaca cacacacacacacacacacaca tgctcattca chr12:49187816-49188316 + 9 4.48e-09 cagacaga cacacacacacacacacacaca cTTCAGTCGG chr1:9802919-9803419 + 27 1.13e-08 ATTCTAATGC AAAAATAATATACAAGCAAACA GAGCTTACTT chr19:40567075-40567575 + 57 1.29e-08 taaataaata aataaataaataaaGTCTTAAA GTCCTGGGTG chr19:3022683-3023183 + 56 1.46e-08 tggctatgtc aataaaactttatttgcaaaaa caagtggagg chr19:40569728-40570228 + 53 1.88e-08 cacagacaca cacacacagacacacacacaca gacacacaga chr7:133492163-133492663 - 51 2.12e-08 AAAAGAGAAC CATAAAAGCATACATAATGAAA TGCTATCTTT chr6:2028590-2029090 - 6 5.47e-08 CTCTATTATG AACACATAAATCATTTCATAAA ACGGT chr6:42147231-42147731 + 22 6.13e-08 acagagaaac ctcagaaagttacataaaaaaa ctaataaaag chr6:75413250-75413750 - 27 6.86e-08 CAACATACAA AACTCAAGTTTAAACAAACAAA CATGATTGAG chr17:73310517-73311017 + 59 6.86e-08 cacacacaca cacacacacacacacacacGCA CTTCAGTCCT chr15:75023444-75023944 - 76 9.56e-08 GGG AAAATAAGGACACACACAGACA GCCGTGGACC chr19:39033050-39033550 + 58 1.32e-07 ccccgtctct actaaaaatacaaaaattagct gggcgtggta chr9:129175671-129176171 + 4 1.47e-07 CAA CTTAGAAGCACACACACAAACA CCACAGCTGA chr11:59557318-59557818 + 78 1.81e-07 CCCGCCCTGT CAAGGAAATTtaaaagaaaaaa a chr11:120346987-12034748 - 6 2.01e-07 GAAAGAAAGA AAAAGAAAGAGAAAGAAAGAAA GAAAG chr5:69521130-69521630 - 12 2.73e-07 TGTAATAGTA AACAACTGAACACAATTAAAAT GTCCATAAAT chr5:59303215-59303715 - 7 4.47e-07 CATGACCAAG AACCCAAAAGCAAATGCAATAA AAACAA chr10:21525346-21525846 - 22 5.42e-07 ACTACTACAA ACCAGGACTATAAACATAAACA TGTGTCACTG chr5:124740939-124741439 - 9 5.96e-07 CCACTCCCTT AATACGTGAACAAAATCAAAAC ATGCCATA chr15:66504639-66505139 + 75 7.18e-07 CCCGCCTAAG AACCAACACGGATACAAAAAAT ATCT chr6:168147170-168147670 + 68 8.64e-07 TCTCCTTCCC ACCCCAAATGTAAATATACAGT ATTGGATTCC chr6:37169478-37169978 - 22 1.04e-06 CGTATCGATT CAAACCCAAACAATAACAAAGC CATCAAAGGC chr9:135330001-135330501 - 21 1.13e-06 ACAACAAAGC ATTAAACGTGTCAAAATACAAT CTTTTTATGG chr12:54288422-54288922 + 2 1.13e-06 t actaaaaatacaaaaattggcc aggcgcggtg chr10:44752830-44753330 - 34 1.48e-06 GGCTGGGCAG ATTGTATAAACAACTATTAAAA CCTCTCTCCT chr9:135967565-135968065 - 77 1.61e-06 TG CACACATATGCACACATGCACA CAACACGCCC chr19:38683955-38684455 - 53 2.67e-06 GCATAAGGCC TACCCTACTATAATTACACAAA TGACTCACAT chr6:170279881-170280381 + 55 2.67e-06 ACACACGCCC ACTAAACAAACAGCTACACGAA TTAATCATGC chr19:33293257-33293757 + 33 3.70e-06 ATTGCTCTAG CAAAACTCAGGAATCAAATAAA ACGTGTTTGC chr6:82260149-82260649 - 18 4.69e-06 TAAGTGGTTG AATATCAAATTCAAGTCACAAC TAGAAGGTCT chr14:36835050-36835550 + 49 4.69e-06 TAACCAAGTT CATCCTACATGACATTAACAAA TTACTCCCTC chr7:27165481-27165981 + 75 4.69e-06 TAATTGTGGC CAACGACGATTAAAAGATCAAA TCTA chr17:63773651-63774151 - 61 5.47e-06 AACGGGTTGG ACAGAAACCATATTTACATGAA CATGCCTATA chr1:80403306-80403806 - 6 5.91e-06 GTAATGTAAT ATTATATACACATCTACTATAA ACATT chr22:42648698-42649198 + 4 5.91e-06 TCA CACACACATTCACTCTCAAGCC ATTCACACGC chr5:181187993-181188493 + 16 7.98e-06 aactccgtct ctactaaaaatacaaaattagc cgggcgtggt chr19:38224281-38224781 + 29 8.58e-06 ctcacagcct cccacacactcctactcacaca ccttcgcacg chr19:34218155-34218655 - 40 9.23e-06 CATATCCAGA CATAAATCTAGATAAGTAGGAT GTTTGAAACA chr5:139747046-139747546 + 11 9.23e-06 CAGTTACCCC CAACCCCCCGCACACACACACA CCTCACAGCC chr10:68988716-68989216 + 9 1.15e-05 GAGAAGGA ACCATACAAGTCCAAATACAGC GCCCGGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35881941-35882441 7.7e-13 11_[+4]_67 chr5:34182251-34182751 3.7e-12 52_[+4]_26 chr17:75368291-75368791 5.9e-12 35_[-4]_43 chr1:28648546-28649046 2.9e-10 58_[-4]_20 chr19:4247411-4247911 1.2e-09 66_[-4]_12 chr5:160008634-160009134 1.4e-09 50_[+4]_28 chr1:6075672-6076172 1.9e-09 68_[-4]_10 chr10:88342637-88343137 2.6e-09 57_[-4]_21 chr17:40140132-40140632 4.5e-09 74_[+4]_4 chr19:35819850-35820350 4.5e-09 38_[+4]_40 chr12:49187816-49188316 4.5e-09 8_[+4]_70 chr1:9802919-9803419 1.1e-08 26_[+4]_52 chr19:40567075-40567575 1.3e-08 56_[+4]_22 chr19:3022683-3023183 1.5e-08 55_[+4]_23 chr19:40569728-40570228 1.9e-08 52_[+4]_26 chr7:133492163-133492663 2.1e-08 50_[-4]_28 chr6:2028590-2029090 5.5e-08 5_[-4]_73 chr6:42147231-42147731 6.1e-08 21_[+4]_57 chr6:75413250-75413750 6.9e-08 26_[-4]_52 chr17:73310517-73311017 6.9e-08 58_[+4]_20 chr15:75023444-75023944 9.6e-08 75_[-4]_3 chr19:39033050-39033550 1.3e-07 57_[+4]_21 chr9:129175671-129176171 1.5e-07 3_[+4]_75 chr11:59557318-59557818 1.8e-07 77_[+4]_1 chr11:120346987-12034748 2e-07 5_[-4]_73 chr5:69521130-69521630 2.7e-07 11_[-4]_67 chr5:59303215-59303715 4.5e-07 6_[-4]_72 chr10:21525346-21525846 5.4e-07 21_[-4]_57 chr5:124740939-124741439 6e-07 8_[-4]_70 chr15:66504639-66505139 7.2e-07 74_[+4]_4 chr6:168147170-168147670 8.6e-07 67_[+4]_11 chr6:37169478-37169978 1e-06 21_[-4]_57 chr9:135330001-135330501 1.1e-06 20_[-4]_58 chr12:54288422-54288922 1.1e-06 1_[+4]_77 chr10:44752830-44753330 1.5e-06 33_[-4]_45 chr9:135967565-135968065 1.6e-06 76_[-4]_2 chr19:38683955-38684455 2.7e-06 52_[-4]_26 chr6:170279881-170280381 2.7e-06 54_[+4]_24 chr19:33293257-33293757 3.7e-06 32_[+4]_46 chr6:82260149-82260649 4.7e-06 17_[-4]_61 chr14:36835050-36835550 4.7e-06 48_[+4]_30 chr7:27165481-27165981 4.7e-06 74_[+4]_4 chr17:63773651-63774151 5.5e-06 60_[-4]_18 chr1:80403306-80403806 5.9e-06 5_[-4]_73 chr22:42648698-42649198 5.9e-06 3_[+4]_75 chr5:181187993-181188493 8e-06 15_[+4]_63 chr19:38224281-38224781 8.6e-06 28_[+4]_50 chr19:34218155-34218655 9.2e-06 39_[-4]_39 chr5:139747046-139747546 9.2e-06 10_[+4]_68 chr10:68988716-68989216 1.1e-05 8_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAHAMAMAHAYAMAHAMAMAMA width=22 seqs=50 chr19:35881941-35882441 ( 12) AAAATAAAAATAAAAATAAAAA 1 chr5:34182251-34182751 ( 53) AATAAATAAATAAATAAAAAAT 1 chr17:75368291-75368791 ( 36) AAAAAAACAACAAAAAAAAAAA 1 chr1:28648546-28649046 ( 59) AAAAAAAAAACACACACAGAAT 1 chr19:4247411-4247911 ( 67) AACACACACACACACACACACA 1 chr5:160008634-160009134 ( 51) AATAAATAAATAAATAAATAGT 1 chr1:6075672-6076172 ( 69) AATAAAACTTTATTTATACAAA 1 chr10:88342637-88343137 ( 58) AATAAAACTTTATTTACAAACA 1 chr17:40140132-40140632 ( 75) CACACACACACACACACACACA 1 chr19:35819850-35820350 ( 39) CACACACACACACACACACACA 1 chr12:49187816-49188316 ( 9) CACACACACACACACACACACA 1 chr1:9802919-9803419 ( 27) AAAAATAATATACAAGCAAACA 1 chr19:40567075-40567575 ( 57) AATAAATAAATAAAGTCTTAAA 1 chr19:3022683-3023183 ( 56) AATAAAACTTTATTTGCAAAAA 1 chr19:40569728-40570228 ( 53) CACACACAGACACACACACACA 1 chr7:133492163-133492663 ( 51) CATAAAAGCATACATAATGAAA 1 chr6:2028590-2029090 ( 6) AACACATAAATCATTTCATAAA 1 chr6:42147231-42147731 ( 22) CTCAGAAAGTTACATAAAAAAA 1 chr6:75413250-75413750 ( 27) AACTCAAGTTTAAACAAACAAA 1 chr17:73310517-73311017 ( 59) CACACACACACACACACACGCA 1 chr15:75023444-75023944 ( 76) AAAATAAGGACACACACAGACA 1 chr19:39033050-39033550 ( 58) ACTAAAAATACAAAAATTAGCT 1 chr9:129175671-129176171 ( 4) CTTAGAAGCACACACACAAACA 1 chr11:59557318-59557818 ( 78) CAAGGAAATTTAAAAGAAAAAA 1 chr11:120346987-12034748 ( 6) AAAAGAAAGAGAAAGAAAGAAA 1 chr5:69521130-69521630 ( 12) AACAACTGAACACAATTAAAAT 1 chr5:59303215-59303715 ( 7) AACCCAAAAGCAAATGCAATAA 1 chr10:21525346-21525846 ( 22) ACCAGGACTATAAACATAAACA 1 chr5:124740939-124741439 ( 9) AATACGTGAACAAAATCAAAAC 1 chr15:66504639-66505139 ( 75) AACCAACACGGATACAAAAAAT 1 chr6:168147170-168147670 ( 68) ACCCCAAATGTAAATATACAGT 1 chr6:37169478-37169978 ( 22) CAAACCCAAACAATAACAAAGC 1 chr9:135330001-135330501 ( 21) ATTAAACGTGTCAAAATACAAT 1 chr12:54288422-54288922 ( 2) ACTAAAAATACAAAAATTGGCC 1 chr10:44752830-44753330 ( 34) ATTGTATAAACAACTATTAAAA 1 chr9:135967565-135968065 ( 77) CACACATATGCACACATGCACA 1 chr19:38683955-38684455 ( 53) TACCCTACTATAATTACACAAA 1 chr6:170279881-170280381 ( 55) ACTAAACAAACAGCTACACGAA 1 chr19:33293257-33293757 ( 33) CAAAACTCAGGAATCAAATAAA 1 chr6:82260149-82260649 ( 18) AATATCAAATTCAAGTCACAAC 1 chr14:36835050-36835550 ( 49) CATCCTACATGACATTAACAAA 1 chr7:27165481-27165981 ( 75) CAACGACGATTAAAAGATCAAA 1 chr17:63773651-63774151 ( 61) ACAGAAACCATATTTACATGAA 1 chr1:80403306-80403806 ( 6) ATTATATACACATCTACTATAA 1 chr22:42648698-42649198 ( 4) CACACACATTCACTCTCAAGCC 1 chr5:181187993-181188493 ( 16) CTACTAAAAATACAAAATTAGC 1 chr19:38224281-38224781 ( 29) CCCACACACTCCTACTCACACA 1 chr19:34218155-34218655 ( 40) CATAAATCTAGATAAGTAGGAT 1 chr5:139747046-139747546 ( 11) CAACCCCCCGCACACACACACA 1 chr10:68988716-68989216 ( 9) ACCATACAAGTCCAAATACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.9962 E= 3.4e-052 162 32 -1229 -329 188 -93 -1229 -70 41 32 -1229 88 196 -93 -234 -329 96 24 -134 -48 203 -161 -293 -170 130 -2 -1229 17 166 -47 -93 -1229 96 -34 -193 62 166 -1229 -93 17 -1229 60 -161 117 220 -161 -1229 -1229 117 32 -392 -29 196 -234 -1229 -12 52 16 -234 71 188 -1229 -134 -29 41 72 -1229 30 207 -1229 -392 -29 96 32 -134 -70 207 -1229 -112 -229 152 16 -161 -1229 180 -112 -1229 -12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 3.4e-052 0.600000 0.380000 0.000000 0.020000 0.720000 0.160000 0.000000 0.120000 0.260000 0.380000 0.000000 0.360000 0.760000 0.160000 0.060000 0.020000 0.380000 0.360000 0.120000 0.140000 0.800000 0.100000 0.040000 0.060000 0.480000 0.300000 0.000000 0.220000 0.620000 0.220000 0.160000 0.000000 0.380000 0.240000 0.080000 0.300000 0.620000 0.000000 0.160000 0.220000 0.000000 0.460000 0.100000 0.440000 0.900000 0.100000 0.000000 0.000000 0.440000 0.380000 0.020000 0.160000 0.760000 0.060000 0.000000 0.180000 0.280000 0.340000 0.060000 0.320000 0.720000 0.000000 0.120000 0.160000 0.260000 0.500000 0.000000 0.240000 0.820000 0.000000 0.020000 0.160000 0.380000 0.380000 0.120000 0.120000 0.820000 0.000000 0.140000 0.040000 0.560000 0.340000 0.100000 0.000000 0.680000 0.140000 0.000000 0.180000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAHAMAMAHAYAMAHAMAMAMA MEME-4 regular expression -------------------------------------------------------------------------------- [AC]A[CTA]A[AC]A[ACT][AC][ATC][AT][CT]A[AC]A[CTA]A[CAT]A[AC]A[AC]A -------------------------------------------------------------------------------- Time 1910.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 width = 41 sites = 6 llr = 268 E-value = 4.1e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::::::aa::::a::52::::2:a::::3a2::3:: pos.-specific C 8:a:5:aa::::::aa8::a273:22::::3a7::::a::: probability G :3:::a::2a2:::::::a::2:::88a:a7::7:8a:788 matrix T 27::5:::8:8::a::2:::3:7a8:::::::3::::::22 bits 2.4 * *** * * * * 2.1 * *** * * * * 1.9 * *** * * * * 1.6 ** *********** *** ** *** * * ** Relative 1.4 ** *********** *** ** *** * * ** Entropy 1.2 **** *************** ******** * **** ** (64.4 bits) 0.9 ******************** ******** ********** 0.7 ********************* ******************* 0.5 ***************************************** 0.2 ***************************************** 0.0 ----------------------------------------- Multilevel CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG consensus G T T C C TA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------- chr9:131373549-131374049 + 44 4.76e-24 ggcgtggtgg ctcacgcctgtaatcccagcactttgggaggccgaggcggg cggatcacaa chr12:48716917-48717417 + 43 1.44e-21 ggcgcggtgg ttcacgcctgtaatcccagcactttgggagcccgaagcggg cggatcacga chr10:14691379-14691879 + 48 3.72e-21 ggtgtggtgg ctcatgcctgtaatcctagccctttgggaggccaaggcggt tggatcactt chr17:75905060-75905560 + 59 8.70e-21 ggcgcggtgg ctcacgccgggaatcccagcactttgggaggccaaggcggg t chr17:59093774-59094274 - 30 4.90e-20 GGTGTGGCGT CGCATGCCTGTAATCCCAGCTGCTTGAGAGGCTGAGGCATG AGAATTGCTT chr5:181187993-181188493 + 50 1.37e-19 ggcgtggtgg cgcatgcctgtaatcccagctactccggagcctgaggcagg agaatggctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:131373549-131374049 4.8e-24 43_[+5]_16 chr12:48716917-48717417 1.4e-21 42_[+5]_17 chr10:14691379-14691879 3.7e-21 47_[+5]_12 chr17:75905060-75905560 8.7e-21 58_[+5]_1 chr17:59093774-59094274 4.9e-20 29_[-5]_30 chr5:181187993-181188493 1.4e-19 49_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG width=41 seqs=6 chr9:131373549-131374049 ( 44) CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG 1 chr12:48716917-48717417 ( 43) TTCACGCCTGTAATCCCAGCACTTTGGGAGCCCGAAGCGGG 1 chr10:14691379-14691879 ( 48) CTCATGCCTGTAATCCTAGCCCTTTGGGAGGCCAAGGCGGT 1 chr17:75905060-75905560 ( 59) CTCACGCCGGGAATCCCAGCACTTTGGGAGGCCAAGGCGGG 1 chr17:59093774-59094274 ( 30) CGCATGCCTGTAATCCCAGCTGCTTGAGAGGCTGAGGCATG 1 chr5:181187993-181188493 ( 50) CGCATGCCTGTAATCCCAGCTACTCCGGAGCCTGAGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 36000 bayes= 12.998 E= 4.1e-026 -923 145 -923 -23 -923 -923 13 177 -923 171 -923 -923 235 -923 -923 -923 -923 71 -923 135 -923 -923 171 -923 -923 171 -923 -923 -923 171 -923 -923 -923 -923 -87 209 -923 -923 171 -923 -923 -923 -87 209 235 -923 -923 -923 235 -923 -923 -923 -923 -923 -923 235 -923 171 -923 -923 -923 171 -923 -923 -923 145 -923 -23 235 -923 -923 -923 -923 -923 171 -923 -923 171 -923 -923 135 -87 -923 77 -23 113 -87 -923 -923 13 -923 177 -923 -923 -923 235 -923 -87 -923 209 -923 -87 145 -923 -23 -923 145 -923 -923 -923 171 -923 235 -923 -923 -923 -923 -923 171 -923 -923 13 113 -923 -923 171 -923 -923 -923 113 -923 77 77 -923 113 -923 235 -923 -923 -923 -23 -923 145 -923 -923 -923 171 -923 -923 171 -923 -923 77 -923 113 -923 -923 -923 145 -23 -923 -923 145 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 6 E= 4.1e-026 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.166667 0.000000 0.333333 0.166667 0.666667 0.166667 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.833333 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCAYGCCTGTAATCCCAGCWCYTTGGGAGSCYRAGGCRGG MEME-5 regular expression -------------------------------------------------------------------------------- C[TG]CA[CT]GCCTGTAATCCCAGC[AT]C[TC]TTGGGAG[GC]C[CT][GA]AGGC[GA]GG -------------------------------------------------------------------------------- Time 2318.50 secs. ******************************************************************************** ******************************************************************************** MOTIF RACTACAACTCCCAGVRKGC MEME-6 width = 20 sites = 17 llr = 298 E-value = 9.5e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 Description -------------------------------------------------------------------------------- Simplified A 3a::9:951:1::8:26121 pos.-specific C 2:a::9:26:9aa:14:128 probability G 5:::::1::::::2824651 matrix T :::a11122a:::111:311 bits 2.4 * * * 2.1 * ** * 1.9 * ** * 1.6 **** * * ** Relative 1.4 ****** **** Entropy 1.2 ****** ***** * (25.3 bits) 0.9 ****** ****** * 0.7 ************** * * 0.5 *************** ** * 0.2 *************** **** 0.0 -------------------- Multilevel GACTACAACTCCCAGCAGGC consensus A CT AGT sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr5:75511623-75512123 - 54 8.27e-12 TCAGGATCGC GACTACAACTCCCAGGAGGC TGCGCGAGCG chr17:17591472-17591972 - 81 9.13e-11 . AACTACATTTCCCAGAAGGC CGGAATATGT chr7:129224503-129225003 + 49 1.98e-10 AGGCTGAAAG GACTACAACTCCCAGGGGAC GCTGCGGGCC chr6:42563632-42564132 + 44 2.68e-10 CTTGAGAATG GACTACAACTCCCACAATGC ATTCGAGGGG chr16:30775172-30775672 - 65 4.85e-10 GCGGACCAGG AACTACACTTCCCAGGATGC AGCCCGAGGA chr19:44259581-44260081 - 66 1.00e-09 ACGGCTTCTG CACTACACTTCCCAGAATGC CCGAGCGGAA chr9:15422470-15422970 - 67 1.26e-09 GGGCATCAGA AACTACATTTCCCGGCAGGC CATGGGCAGG chr17:7435052-7435552 + 52 1.57e-09 TAGAGCGGGA AACTACAACTCCCAGGATAA CGCGGGATTT chr20:47501594-47502094 + 57 6.14e-09 GTGGCCTCGG GACTACATATCCCAGTGGCC CCCGTGCGGC chr1:62783603-62784103 - 22 7.24e-09 CGAGCACTTG GACTTCAACTACCAGCAGGC CATGCAGCAT chr15:75347346-75347846 + 14 9.34e-09 TTCCCTGAGG GACTACACCTCCCAGCGGCT CCCAGCGCGC chr14:73027045-73027545 + 36 1.74e-08 GACTCTGAAT GACTACAACTCCCAGTACTG AAGAGGCTGC chr3:50292230-50292730 + 66 1.87e-08 ACGAGGCTAA AACTACTAATCCCAGAGGCC TGAGCGCGCA chr19:39125801-39126301 - 66 2.86e-08 CTCCGACCTC CACTACAACTCCCTCCAGTC TGCGTTAACC chr16:30923138-30923638 + 73 3.07e-08 GTGGCCGCAG GACTACAACTCCCGTCGAGC CCTGCGTG chr19:49641785-49642285 + 26 4.81e-08 GCGGTGCGCG GACTACGCCTCCCGGCGTGC ATCGCGCGGA chr14:90383208-90383708 - 57 5.12e-08 AGGGCGAGGG CACTATATCTCCCAGCGGAG GAGCACACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:75511623-75512123 8.3e-12 53_[-6]_27 chr17:17591472-17591972 9.1e-11 80_[-6] chr7:129224503-129225003 2e-10 48_[+6]_32 chr6:42563632-42564132 2.7e-10 43_[+6]_37 chr16:30775172-30775672 4.8e-10 64_[-6]_16 chr19:44259581-44260081 1e-09 65_[-6]_15 chr9:15422470-15422970 1.3e-09 66_[-6]_14 chr17:7435052-7435552 1.6e-09 51_[+6]_29 chr20:47501594-47502094 6.1e-09 56_[+6]_24 chr1:62783603-62784103 7.2e-09 21_[-6]_59 chr15:75347346-75347846 9.3e-09 13_[+6]_67 chr14:73027045-73027545 1.7e-08 35_[+6]_45 chr3:50292230-50292730 1.9e-08 65_[+6]_15 chr19:39125801-39126301 2.9e-08 65_[-6]_15 chr16:30923138-30923638 3.1e-08 72_[+6]_8 chr19:49641785-49642285 4.8e-08 25_[+6]_55 chr14:90383208-90383708 5.1e-08 56_[-6]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RACTACAACTCCCAGVRKGC width=20 seqs=17 chr5:75511623-75512123 ( 54) GACTACAACTCCCAGGAGGC 1 chr17:17591472-17591972 ( 81) AACTACATTTCCCAGAAGGC 1 chr7:129224503-129225003 ( 49) GACTACAACTCCCAGGGGAC 1 chr6:42563632-42564132 ( 44) GACTACAACTCCCACAATGC 1 chr16:30775172-30775672 ( 65) AACTACACTTCCCAGGATGC 1 chr19:44259581-44260081 ( 66) CACTACACTTCCCAGAATGC 1 chr9:15422470-15422970 ( 67) AACTACATTTCCCGGCAGGC 1 chr17:7435052-7435552 ( 52) AACTACAACTCCCAGGATAA 1 chr20:47501594-47502094 ( 57) GACTACATATCCCAGTGGCC 1 chr1:62783603-62784103 ( 22) GACTTCAACTACCAGCAGGC 1 chr15:75347346-75347846 ( 14) GACTACACCTCCCAGCGGCT 1 chr14:73027045-73027545 ( 36) GACTACAACTCCCAGTACTG 1 chr3:50292230-50292730 ( 66) AACTACTAATCCCAGAGGCC 1 chr19:39125801-39126301 ( 66) CACTACAACTCCCTCCAGTC 1 chr16:30923138-30923638 ( 73) GACTACAACTCCCGTCGAGC 1 chr19:49641785-49642285 ( 26) GACTACGCCTCCCGGCGTGC 1 chr14:90383208-90383708 ( 57) CACTATATCTCCCAGCGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 12.2756 E= 9.5e-022 59 -79 80 -1073 235 -1073 -1073 -1073 -1073 171 -1073 -1073 -1073 -1073 -1073 235 227 -1073 -1073 -173 -1073 163 -1073 -173 217 -1073 -237 -173 144 -37 -1073 27 -73 109 -1073 27 -1073 -1073 -1073 235 -173 163 -1073 -1073 -1073 171 -1073 -1073 -1073 171 -1073 -1073 197 -1073 -79 -173 -1073 -137 143 -173 27 44 -37 -73 159 -1073 44 -1073 -173 -237 95 59 -15 -79 80 -73 -173 133 -137 -173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 17 E= 9.5e-022 0.294118 0.176471 0.529412 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.941176 0.000000 0.000000 0.058824 0.000000 0.941176 0.000000 0.058824 0.882353 0.000000 0.058824 0.058824 0.529412 0.235294 0.000000 0.235294 0.117647 0.647059 0.000000 0.235294 0.000000 0.000000 0.000000 1.000000 0.058824 0.941176 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.764706 0.000000 0.176471 0.058824 0.000000 0.117647 0.823529 0.058824 0.235294 0.411765 0.235294 0.117647 0.588235 0.000000 0.411765 0.000000 0.058824 0.058824 0.588235 0.294118 0.176471 0.176471 0.529412 0.117647 0.058824 0.764706 0.117647 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAACTCCCAGVRKGC MEME-6 regular expression -------------------------------------------------------------------------------- [GA]ACTACA[ACT][CT]TCCCAG[CAG][AG][GT]GC -------------------------------------------------------------------------------- Time 2728.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYGGGGGMRGGGMGG MEME-7 width = 16 sites = 49 llr = 528 E-value = 9.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 Description -------------------------------------------------------------------------------- Simplified A :22:11::46::261: pos.-specific C :14:12::6::::4:1 probability G a719669a:39a8179 matrix T :1311::::11:::2: bits 2.4 2.1 1.9 1.6 * * * Relative 1.4 * * * ** Entropy 1.2 * * ** *** (15.6 bits) 0.9 * * ** ***** * 0.7 * * ********** 0.5 ** * *********** 0.2 **************** 0.0 ---------------- Multilevel GGCGGGGGCAGGGAGG consensus T C AG ACT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr22:41022414-41022914 + 33 2.35e-09 ACGTGCCCGC GGTGGGGGCAGGGAGG GACGCGCAGC chr1:93345568-93346068 + 58 1.42e-08 CGCCGGCGTG GGTGGGGGAAGGGCGG CAGCCACACC chr19:40603618-40604118 - 55 4.12e-08 AGAGAGGTGC GGCGGGGGCAGGGCGG AGGCTCCACA chrX:41333185-41333685 - 84 2.57e-07 G GACGGGGGAGGGGAGG GGAAGAGGAG chr5:10353459-10353959 - 40 3.60e-07 GAGCGACACG GGAGGGGGAGGGGCGG GAACACCTAG chr1:208184288-208184788 + 42 4.16e-07 TACAGGGTTG GGTGTAGGCAGGGATG GAAGGGGCAC chr15:72230289-72230789 + 79 4.79e-07 AGGGAACTGG GGCGCGGGAAGGGCGG TCGCGC chr15:75023444-75023944 + 24 6.33e-07 TTCTCGCGGC GGCGCGGGAGGGGAGG TTCGGGGAGC chr8:24954991-24955491 - 17 7.24e-07 GCCCTTGTTG GGTGGGGGAGGGGAAG ACGTGGGAAT chr1:159924365-159924865 - 18 7.24e-07 GGGGGTGGGG GGCGGCGGCTGGGAGG CCGGACCTGC chr17:79777454-79777954 + 74 9.33e-07 GCCCCTCGAA GGCGGGGGCAGGAAGC AGCCGCCGCG chr19:35248247-35248747 + 3 1.04e-06 GG GGTTTGGGCAGGGAGG GAACAGGTGC chr12:121798153-12179865 - 62 1.04e-06 GGCTGCAGGG GGTGGGGGCTGGGCTG CCTCAGAGCT chr1:234723906-234724406 + 37 1.29e-06 gagggagagg gagggaggaagggagg agggaggtgg chr8:27948137-27948637 + 19 1.45e-06 GGCCCTCTGG GAGGGAGGCAGGGAGG CCCCAGCTCA chr1:31944238-31944738 + 68 1.45e-06 GGGGCGGGGC GGAGGGGGCAGGGCGC TGGCTCCAGC chr9:128340089-128340589 + 66 1.45e-06 GGCAAGGGCC GGGGTCGGCAGGGAGG AAGGGCCGGG chr1:227787786-227788286 + 72 2.02e-06 GTTCGCCGCG GGCGAGGGAGGGGCTG TGGGTGTGGC chr19:40443112-40443612 + 67 2.24e-06 GGCACAGGCG GGTGGGGGAAGGGAAC CTGGACGTCC chr2:131492823-131493323 + 63 2.47e-06 GTTTTGGCGC GGTGGCGGAATGGCGG CTTCCACCTC chr6:3023787-3024287 - 10 2.47e-06 GCTGAGCGAG GGTGGAGGAGGGGAGC TATGTGGCC chr17:76353747-76354247 + 35 3.04e-06 CGCCATCTCG GATGAGGGCAGGGAGC CTGGCGACTC chr13:24922751-24923251 + 34 3.04e-06 GGCGTTGCCC GGCGGGGGATGGACTG CGCGCCGCCT chr19:38402960-38403460 + 82 3.04e-06 CGGTGAGGCT GGTGGGTGCAGGAAGG CCA chr6:30687276-30687776 - 19 3.36e-06 GGGTCGGCGA GCTGGGGGAAGGGATC TGGACACCTG chr19:38304926-38305426 + 77 4.07e-06 AGCACCTTGG GTTGGGGGCGGGGCTG GGCGGGAC chr9:85742078-85742578 - 77 4.07e-06 TGATTGAT GGCGGGGGAGGGGGTG GGCGCGGGCT chr19:39833718-39834218 + 29 4.89e-06 GTCTCACGGC GACGGGAGCAGGGCGG ATCCCGTCCT chr20:3811618-3812118 + 70 5.86e-06 GGGGCCTGGG GCAGCAGGAAGGGAGG GGCCTCACGT chr14:101947855-10194835 - 54 5.86e-06 CAATGCACAG GCCGGAGGCGGGGCGG TCCTGCATTG chr6:56844064-56844564 - 50 6.98e-06 GTGGGCTCTG GGGGGCAGAAGGGAGG GACCGCAGGC chr21:42923894-42924394 + 26 6.98e-06 ctgagggttt gaagggggaaggaggg ttgagttaat chr12:6765951-6766451 - 29 7.64e-06 GGAGAGCTAG GGAGTCGGGAGGGAGG ACGAGACCAG chr19:56538300-56538800 + 74 8.33e-06 AGAGCGACCC GCAGAGGGCAGGACGG ACGGGCGTTG chr3:4978526-4979026 + 30 9.07e-06 GAGGGTGAGC AGTGGGGGCAGGGAAG CCAGGACGGA chr12:53995478-53995978 + 27 9.07e-06 TCAGGGCGGG GGCGCCGGCGGGAATG CAGGCCCGGC chr1:155017203-155017703 - 7 1.07e-05 CCTGCCCAGG GCCGTGGGGAGGGAGG GCTAGG chr5:138752970-138753470 + 2 1.07e-05 G GTGGGCGGCGGGGAGG AAGAGGTCCC chr12:121399659-12140015 - 58 1.25e-05 CTCCTGGCTG GGAGTGCGCGGGGAGG ATTCTTTTCC chr22:46013739-46014239 - 5 1.25e-05 CAGGCCCGGA GGAGCAGGCGGGAATG TGGA chr10:67884311-67884811 + 77 1.25e-05 GCGCCGAGAG GGCGGGGGCGGCGATG GGGCGGGT chr19:40420970-40421470 - 33 1.35e-05 GGAGAGAGGC GCAGGGGGCTGGACGG TGACCCGAGG chr10:72354700-72355200 + 36 1.35e-05 GGGGAGGCCG GGCGAGCGAAGGGCTG CGCCACCCGC chr19:55643332-55643832 - 78 1.98e-05 GAAGAGG GTCTAGGGAAGGAAGG TTGGGGCGGG chr3:157159995-157160495 - 25 2.13e-05 TGCCCGGCGT GGTGACGTCAGGGCGG AAGCGCACGC chr16:2267850-2268350 - 6 2.13e-05 AGGAGGAGGT GGCGGCGGCGGGAAGA TGTAA chr17:78214044-78214544 + 64 2.63e-05 CAGAGGTGGC GGCGGCGGCATGGGTG CCCCGACGTT chr1:163321636-163322136 + 85 3.24e-05 GTCGCGGTTG GACGTGGGCTTGGCGG chr6:150142560-150143060 - 60 5.10e-05 CCGATGTGTA GACTCCGGAAGGACGG GCGTGGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:41022414-41022914 2.3e-09 32_[+7]_52 chr1:93345568-93346068 1.4e-08 57_[+7]_27 chr19:40603618-40604118 4.1e-08 54_[-7]_30 chrX:41333185-41333685 2.6e-07 83_[-7]_1 chr5:10353459-10353959 3.6e-07 39_[-7]_45 chr1:208184288-208184788 4.2e-07 41_[+7]_43 chr15:72230289-72230789 4.8e-07 78_[+7]_6 chr15:75023444-75023944 6.3e-07 23_[+7]_61 chr8:24954991-24955491 7.2e-07 16_[-7]_68 chr1:159924365-159924865 7.2e-07 17_[-7]_67 chr17:79777454-79777954 9.3e-07 73_[+7]_11 chr19:35248247-35248747 1e-06 2_[+7]_82 chr12:121798153-12179865 1e-06 61_[-7]_23 chr1:234723906-234724406 1.3e-06 36_[+7]_48 chr8:27948137-27948637 1.4e-06 18_[+7]_66 chr1:31944238-31944738 1.4e-06 67_[+7]_17 chr9:128340089-128340589 1.4e-06 65_[+7]_19 chr1:227787786-227788286 2e-06 71_[+7]_13 chr19:40443112-40443612 2.2e-06 66_[+7]_18 chr2:131492823-131493323 2.5e-06 62_[+7]_22 chr6:3023787-3024287 2.5e-06 9_[-7]_75 chr17:76353747-76354247 3e-06 34_[+7]_50 chr13:24922751-24923251 3e-06 33_[+7]_51 chr19:38402960-38403460 3e-06 81_[+7]_3 chr6:30687276-30687776 3.4e-06 18_[-7]_66 chr19:38304926-38305426 4.1e-06 76_[+7]_8 chr9:85742078-85742578 4.1e-06 76_[-7]_8 chr19:39833718-39834218 4.9e-06 28_[+7]_56 chr20:3811618-3812118 5.9e-06 69_[+7]_15 chr14:101947855-10194835 5.9e-06 53_[-7]_31 chr6:56844064-56844564 7e-06 49_[-7]_35 chr21:42923894-42924394 7e-06 25_[+7]_59 chr12:6765951-6766451 7.6e-06 28_[-7]_56 chr19:56538300-56538800 8.3e-06 73_[+7]_11 chr3:4978526-4979026 9.1e-06 29_[+7]_55 chr12:53995478-53995978 9.1e-06 26_[+7]_58 chr1:155017203-155017703 1.1e-05 6_[-7]_78 chr5:138752970-138753470 1.1e-05 1_[+7]_83 chr12:121399659-12140015 1.2e-05 57_[-7]_27 chr22:46013739-46014239 1.2e-05 4_[-7]_80 chr10:67884311-67884811 1.2e-05 76_[+7]_8 chr19:40420970-40421470 1.4e-05 32_[-7]_52 chr10:72354700-72355200 1.4e-05 35_[+7]_49 chr19:55643332-55643832 2e-05 77_[-7]_7 chr3:157159995-157160495 2.1e-05 24_[-7]_60 chr16:2267850-2268350 2.1e-05 5_[-7]_79 chr17:78214044-78214544 2.6e-05 63_[+7]_21 chr1:163321636-163322136 3.2e-05 84_[+7] chr6:150142560-150143060 5.1e-05 59_[-7]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYGGGGGMRGGGMGG width=16 seqs=49 chr22:41022414-41022914 ( 33) GGTGGGGGCAGGGAGG 1 chr1:93345568-93346068 ( 58) GGTGGGGGAAGGGCGG 1 chr19:40603618-40604118 ( 55) GGCGGGGGCAGGGCGG 1 chrX:41333185-41333685 ( 84) GACGGGGGAGGGGAGG 1 chr5:10353459-10353959 ( 40) GGAGGGGGAGGGGCGG 1 chr1:208184288-208184788 ( 42) GGTGTAGGCAGGGATG 1 chr15:72230289-72230789 ( 79) GGCGCGGGAAGGGCGG 1 chr15:75023444-75023944 ( 24) GGCGCGGGAGGGGAGG 1 chr8:24954991-24955491 ( 17) GGTGGGGGAGGGGAAG 1 chr1:159924365-159924865 ( 18) GGCGGCGGCTGGGAGG 1 chr17:79777454-79777954 ( 74) GGCGGGGGCAGGAAGC 1 chr19:35248247-35248747 ( 3) GGTTTGGGCAGGGAGG 1 chr12:121798153-12179865 ( 62) GGTGGGGGCTGGGCTG 1 chr1:234723906-234724406 ( 37) GAGGGAGGAAGGGAGG 1 chr8:27948137-27948637 ( 19) GAGGGAGGCAGGGAGG 1 chr1:31944238-31944738 ( 68) GGAGGGGGCAGGGCGC 1 chr9:128340089-128340589 ( 66) GGGGTCGGCAGGGAGG 1 chr1:227787786-227788286 ( 72) GGCGAGGGAGGGGCTG 1 chr19:40443112-40443612 ( 67) GGTGGGGGAAGGGAAC 1 chr2:131492823-131493323 ( 63) GGTGGCGGAATGGCGG 1 chr6:3023787-3024287 ( 10) GGTGGAGGAGGGGAGC 1 chr17:76353747-76354247 ( 35) GATGAGGGCAGGGAGC 1 chr13:24922751-24923251 ( 34) GGCGGGGGATGGACTG 1 chr19:38402960-38403460 ( 82) GGTGGGTGCAGGAAGG 1 chr6:30687276-30687776 ( 19) GCTGGGGGAAGGGATC 1 chr19:38304926-38305426 ( 77) GTTGGGGGCGGGGCTG 1 chr9:85742078-85742578 ( 77) GGCGGGGGAGGGGGTG 1 chr19:39833718-39834218 ( 29) GACGGGAGCAGGGCGG 1 chr20:3811618-3812118 ( 70) GCAGCAGGAAGGGAGG 1 chr14:101947855-10194835 ( 54) GCCGGAGGCGGGGCGG 1 chr6:56844064-56844564 ( 50) GGGGGCAGAAGGGAGG 1 chr21:42923894-42924394 ( 26) GAAGGGGGAAGGAGGG 1 chr12:6765951-6766451 ( 29) GGAGTCGGGAGGGAGG 1 chr19:56538300-56538800 ( 74) GCAGAGGGCAGGACGG 1 chr3:4978526-4979026 ( 30) AGTGGGGGCAGGGAAG 1 chr12:53995478-53995978 ( 27) GGCGCCGGCGGGAATG 1 chr1:155017203-155017703 ( 7) GCCGTGGGGAGGGAGG 1 chr5:138752970-138753470 ( 2) GTGGGCGGCGGGGAGG 1 chr12:121399659-12140015 ( 58) GGAGTGCGCGGGGAGG 1 chr22:46013739-46014239 ( 5) GGAGCAGGCGGGAATG 1 chr10:67884311-67884811 ( 77) GGCGGGGGCGGCGATG 1 chr19:40420970-40421470 ( 33) GCAGGGGGCTGGACGG 1 chr10:72354700-72355200 ( 36) GGCGAGCGAAGGGCTG 1 chr19:55643332-55643832 ( 78) GTCTAGGGAAGGAAGG 1 chr3:157159995-157160495 ( 25) GGTGACGTCAGGGCGG 1 chr16:2267850-2268350 ( 6) GGCGGCGGCGGGAAGA 1 chr17:78214044-78214544 ( 64) GGCGGCGGCATGGGTG 1 chr1:163321636-163322136 ( 85) GACGTGGGCTTGGCGG 1 chr6:150142560-150143060 ( 60) GACTCCGGAAGGACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.1393 E= 9.0e-009 -326 -1226 169 -1226 -26 -131 110 -167 -9 42 -158 65 -1226 -1226 162 -167 -67 -131 101 -45 -45 -44 105 -1226 -226 -290 156 -326 -1226 -1226 169 -326 106 86 -290 -1226 160 -1226 1 -94 -1226 -1226 162 -167 -1226 -390 169 -1226 20 -1226 135 -1226 155 27 -231 -1226 -167 -1226 119 32 -326 -131 149 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 49 E= 9.0e-009 0.020408 0.000000 0.979592 0.000000 0.163265 0.122449 0.653061 0.061224 0.183673 0.408163 0.102041 0.306122 0.000000 0.000000 0.938776 0.061224 0.122449 0.122449 0.612245 0.142857 0.142857 0.224490 0.632653 0.000000 0.040816 0.040816 0.897959 0.020408 0.000000 0.000000 0.979592 0.020408 0.408163 0.551020 0.040816 0.000000 0.591837 0.000000 0.306122 0.102041 0.000000 0.000000 0.938776 0.061224 0.000000 0.020408 0.979592 0.000000 0.224490 0.000000 0.775510 0.000000 0.571429 0.367347 0.061224 0.000000 0.061224 0.000000 0.693878 0.244898 0.020408 0.122449 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGGGGMRGGGMGG MEME-7 regular expression -------------------------------------------------------------------------------- GG[CT]GG[GC]GG[CA][AG]GG[GA][AC][GT]G -------------------------------------------------------------------------------- Time 3137.39 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACMYMCACACASABMCMMAC MEME-8 width = 22 sites = 16 llr = 248 E-value = 1.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 Description -------------------------------------------------------------------------------- Simplified A 9:9:613182816:9:3:647: pos.-specific C :a174468182835144836:9 probability G 1:1::1:1:11:15:311::11 matrix T :::3:41:1::11::3111:2: bits 2.4 2.1 1.9 1.6 *** * Relative 1.4 *** * * * Entropy 1.2 *** * * * * ** (22.3 bits) 0.9 ***** ** ** * ***** 0.7 ***** ****** ** ***** 0.5 **************** ***** 0.2 ********************** 0.0 ---------------------- Multilevel ACACATCCACACACACCCACAC consensus TCCA CG TA CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:4247411-4247911 - 34 3.33e-12 ACACACACAC ACACACACACACACACACACAC ACACACACAC chr17:40140132-40140632 + 2 5.21e-11 c acacacacacacacaccccaac acacacacac chr19:40569728-40570228 + 76 1.11e-10 acacacacag acacacagacacagatacacac aca chr19:36489098-36489598 + 75 1.37e-09 CATTCACCAC ACACCTCCACACAGACGCAAGC GCAC chr1:31387499-31387999 + 68 7.83e-09 GACCTCACCC ACACCCCGAGACACATCCACAC GGACGACCTC chr13:113314011-11331451 - 61 9.57e-09 AGGCACACCG ACATCTCCACACTGACTCCCTC CGGGAGGCCA chr16:88882215-88882715 - 46 1.16e-08 GTGCAGTCAC ACACAGCCACCCCCACGCACAC AGCCACGCCC chr20:62598619-62599119 - 70 7.53e-08 CCACACCAC ACCCAGCCACACCCAGCCCAAC ATAGCCATGA chr10:101830486-10183098 + 72 1.04e-07 GGCGTGCGGC ACGCCTCCCCATACACACACAC ACGCGCG chr13:113314753-11331525 - 38 1.04e-07 AGGCACACGG GCATCTCCACACTGACTCCCTC AGGAGGCCAC chr20:50166008-50166508 - 4 1.12e-07 GTGTCTCAGC ACATAATCACAAAGAGCCAAGC ACG chr19:55599864-55600364 - 10 1.53e-07 ACCCAGCACC ACATCCCCAACCACCTCGAAAC GCCTTTCCT chr19:38224281-38224781 + 2 1.77e-07 c acacattcacgcggatactcac agcctcccac chr12:56079832-56080332 + 76 3.16e-07 tctctctctc acacacacacacccctcccctg cca chr1:80403306-80403806 + 36 3.16e-07 ATATTACATT ACACCTCATAACCGAGATAAAC TGGCAGGAAC chr17:63773651-63774151 - 17 1.15e-06 TTAAACTGTT GCATATACTACTAGAGCGACAC TCTTGCCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:4247411-4247911 3.3e-12 33_[-8]_45 chr17:40140132-40140632 5.2e-11 1_[+8]_77 chr19:40569728-40570228 1.1e-10 75_[+8]_3 chr19:36489098-36489598 1.4e-09 74_[+8]_4 chr1:31387499-31387999 7.8e-09 67_[+8]_11 chr13:113314011-11331451 9.6e-09 60_[-8]_18 chr16:88882215-88882715 1.2e-08 45_[-8]_33 chr20:62598619-62599119 7.5e-08 69_[-8]_9 chr10:101830486-10183098 1e-07 71_[+8]_7 chr13:113314753-11331525 1e-07 37_[-8]_41 chr20:50166008-50166508 1.1e-07 3_[-8]_75 chr19:55599864-55600364 1.5e-07 9_[-8]_69 chr19:38224281-38224781 1.8e-07 1_[+8]_77 chr12:56079832-56080332 3.2e-07 75_[+8]_3 chr1:80403306-80403806 3.2e-07 35_[+8]_43 chr17:63773651-63774151 1.2e-06 16_[-8]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACMYMCACACASABMCMMAC width=22 seqs=16 chr19:4247411-4247911 ( 34) ACACACACACACACACACACAC 1 chr17:40140132-40140632 ( 2) ACACACACACACACACCCCAAC 1 chr19:40569728-40570228 ( 76) ACACACAGACACAGATACACAC 1 chr19:36489098-36489598 ( 75) ACACCTCCACACAGACGCAAGC 1 chr1:31387499-31387999 ( 68) ACACCCCGAGACACATCCACAC 1 chr13:113314011-11331451 ( 61) ACATCTCCACACTGACTCCCTC 1 chr16:88882215-88882715 ( 46) ACACAGCCACCCCCACGCACAC 1 chr20:62598619-62599119 ( 70) ACCCAGCCACACCCAGCCCAAC 1 chr10:101830486-10183098 ( 72) ACGCCTCCCCATACACACACAC 1 chr13:113314753-11331525 ( 38) GCATCTCCACACTGACTCCCTC 1 chr20:50166008-50166508 ( 4) ACATAATCACAAAGAGCCAAGC 1 chr19:55599864-55600364 ( 10) ACATCCCCAACCACCTCGAAAC 1 chr19:38224281-38224781 ( 2) ACACATTCACGCGGATACTCAC 1 chr12:56079832-56080332 ( 76) ACACACACACACCCCTCCCCTG 1 chr1:80403306-80403806 ( 36) ACACCTCATAACCGAGATAAAC 1 chr17:63773651-63774151 ( 17) GCATATACTACTAGAGCGACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.2693 E= 1.9e+000 216 -1064 -128 -1064 -1064 171 -1064 -1064 216 -228 -228 -1064 -1064 117 -1064 68 152 52 -1064 -1064 -164 30 -128 116 68 88 -1064 -64 -164 142 -128 -1064 205 -228 -1064 -64 -6 130 -228 -1064 194 -70 -228 -1064 -164 142 -1064 -64 152 -28 -228 -64 -1064 72 72 -1064 216 -128 -1064 -1064 -1064 52 -28 68 68 52 -128 -64 -1064 142 -128 -164 168 4 -1064 -164 94 104 -1064 -1064 181 -1064 -128 -6 -1064 162 -228 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 16 E= 1.9e+000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.062500 0.062500 0.000000 0.000000 0.687500 0.000000 0.312500 0.562500 0.437500 0.000000 0.000000 0.062500 0.375000 0.125000 0.437500 0.312500 0.562500 0.000000 0.125000 0.062500 0.812500 0.125000 0.000000 0.812500 0.062500 0.000000 0.125000 0.187500 0.750000 0.062500 0.000000 0.750000 0.187500 0.062500 0.000000 0.062500 0.812500 0.000000 0.125000 0.562500 0.250000 0.062500 0.125000 0.000000 0.500000 0.500000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.437500 0.250000 0.312500 0.312500 0.437500 0.125000 0.125000 0.000000 0.812500 0.125000 0.062500 0.625000 0.312500 0.000000 0.062500 0.375000 0.625000 0.000000 0.000000 0.687500 0.000000 0.125000 0.187500 0.000000 0.937500 0.062500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACMYMCACACASABMCMMAC MEME-8 regular expression -------------------------------------------------------------------------------- ACA[CT][AC][TC][CA]CACAC[AC][CG]A[CTG][CA]C[AC][CA]AC -------------------------------------------------------------------------------- Time 3532.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTRAWGAWAAAVWRA MEME-9 width = 16 sites = 21 llr = 270 E-value = 2.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 Description -------------------------------------------------------------------------------- Simplified A 121574:949a93547 pos.-specific C ::::3:::::::2::: probability G 2213:2911:::4:42 matrix T 6681:41:41:1:51: bits 2.4 2.1 * 1.9 * * 1.6 * *** Relative 1.4 * * * *** * Entropy 1.2 * * ** *** * * (18.5 bits) 0.9 * * ** *** * * 0.7 ************ *** 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel TTTAAAGAAAAAGTAA consensus GG GCT T AAGG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr7:116218149-116218649 + 43 2.19e-09 CCTTGCTTTG TTTGATGATAAAGTGA TATCATGTTT chr6:168147170-168147670 + 18 3.59e-08 TTGTGATTGC TTTGAAGATTAAGTGA AAATATCAAA chr5:181246145-181246645 - 5 4.61e-08 CCTGTGGAAC GTTTAAGAAAAAGAGA ACCG chr6:75413250-75413750 - 59 7.27e-08 AAATCCCTGG GGTAAAGAAAAACAAA CAACATACAA chr16:29943967-29944467 + 85 7.27e-08 gaggagttta tatgaagaaaaagtag chr8:37360408-37360908 - 5 8.15e-08 ATGACTGTGC TATAAAGAATAAATTA ACCA chr8:123396401-123396901 - 50 1.32e-07 GCCGGAACTA TGTGAAGAAAAAGAAG TCAGCGTTTT chr7:27165481-27165981 - 17 2.31e-07 GCACGATCCC TTTACATAAAAACATA TGGCTTTTGC chr19:49712352-49712852 + 82 4.98e-07 GAGGCCCGGA TTTACGGGTAAAAAAA AAG chr8:37637903-37638403 - 20 5.48e-07 ACTCACAATT TTAAAAGAGAAAATGG TGAAATATGG chr19:38336532-38337032 + 76 9.44e-07 TAAGGAGCAA GGTGAGGATAAAGTTA AAGGAAGAG chr2:112869379-112869879 - 3 9.44e-07 AATAACTCCT ATAAATGATAATGAGA AT chr1:61887421-61887921 - 48 9.44e-07 TGGAATCTGC TAGAATTATAAACAAA ACTATCCACA chr19:38304926-38305426 - 5 1.03e-06 CGTGGCCGCT GTTACAGAAACAATAA ACCC chr18:32018188-32018688 - 58 1.03e-06 CGTGGCCATG CTTAATGATAATCAGA GAACAGCCGC chr14:36835050-36835550 + 8 1.03e-06 ACACTTG TGTTATTATAAAGTGG GTACACTTCC chr12:12891183-12891683 - 26 1.12e-06 CACTTCATGC TGTTATGAAAATAAAG TCCCCGTGCC chr21:39313542-39314042 + 45 1.54e-06 CCGGGGACTC GATGAGGAGAAAGTGA CGCGGAGGCA chr1:3403675-3404175 + 44 1.95e-06 CCCGGAACAG ATGACTGAGAAAATAA ACGTTTGGGC chr9:135330001-135330501 + 77 2.63e-06 TGCTGTGAAA ATTACTGAATAAATAT CTACAGCC chr3:3179477-3179977 - 12 3.27e-06 CCCAGCCTCC TTTGCGGGTAAACAGA CATGGCCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:116218149-116218649 2.2e-09 42_[+9]_42 chr6:168147170-168147670 3.6e-08 17_[+9]_67 chr5:181246145-181246645 4.6e-08 4_[-9]_80 chr6:75413250-75413750 7.3e-08 58_[-9]_26 chr16:29943967-29944467 7.3e-08 84_[+9] chr8:37360408-37360908 8.1e-08 4_[-9]_80 chr8:123396401-123396901 1.3e-07 49_[-9]_35 chr7:27165481-27165981 2.3e-07 16_[-9]_68 chr19:49712352-49712852 5e-07 81_[+9]_3 chr8:37637903-37638403 5.5e-07 19_[-9]_65 chr19:38336532-38337032 9.4e-07 75_[+9]_9 chr2:112869379-112869879 9.4e-07 2_[-9]_82 chr1:61887421-61887921 9.4e-07 47_[-9]_37 chr19:38304926-38305426 1e-06 4_[-9]_80 chr18:32018188-32018688 1e-06 57_[-9]_27 chr14:36835050-36835550 1e-06 7_[+9]_77 chr12:12891183-12891683 1.1e-06 25_[-9]_59 chr21:39313542-39314042 1.5e-06 44_[+9]_40 chr1:3403675-3404175 1.9e-06 43_[+9]_41 chr9:135330001-135330501 2.6e-06 76_[+9]_8 chr3:3179477-3179977 3.3e-06 11_[-9]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTRAWGAWAAAVWRA width=16 seqs=21 chr7:116218149-116218649 ( 43) TTTGATGATAAAGTGA 1 chr6:168147170-168147670 ( 18) TTTGAAGATTAAGTGA 1 chr5:181246145-181246645 ( 5) GTTTAAGAAAAAGAGA 1 chr6:75413250-75413750 ( 59) GGTAAAGAAAAACAAA 1 chr16:29943967-29944467 ( 85) TATGAAGAAAAAGTAG 1 chr8:37360408-37360908 ( 5) TATAAAGAATAAATTA 1 chr8:123396401-123396901 ( 50) TGTGAAGAAAAAGAAG 1 chr7:27165481-27165981 ( 17) TTTACATAAAAACATA 1 chr19:49712352-49712852 ( 82) TTTACGGGTAAAAAAA 1 chr8:37637903-37638403 ( 20) TTAAAAGAGAAAATGG 1 chr19:38336532-38337032 ( 76) GGTGAGGATAAAGTTA 1 chr2:112869379-112869879 ( 3) ATAAATGATAATGAGA 1 chr1:61887421-61887921 ( 48) TAGAATTATAAACAAA 1 chr19:38304926-38305426 ( 5) GTTACAGAAACAATAA 1 chr18:32018188-32018688 ( 58) CTTAATGATAATCAGA 1 chr14:36835050-36835550 ( 8) TGTTATTATAAAGTGG 1 chr12:12891183-12891683 ( 26) TGTTATGAAAATAAAG 1 chr21:39313542-39314042 ( 45) GATGAGGAGAAAGTGA 1 chr1:3403675-3404175 ( 44) ATGACTGAGAAAATAA 1 chr9:135330001-135330501 ( 77) ATTACTGAATAAATAT 1 chr3:3179477-3179977 ( 12) TTTGCGGGTAAACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.7505 E= 2.6e+000 -45 -267 -35 155 -4 -1104 -35 155 -104 -1104 -168 205 142 -1104 13 -45 187 -9 -1104 -1104 113 -1104 -68 96 -1104 -1104 149 -45 221 -1104 -168 -1104 113 -1104 -109 113 213 -1104 -1104 -45 228 -267 -1104 -1104 213 -1104 -1104 -45 77 -35 49 -1104 128 -1104 -1104 142 113 -1104 49 -45 187 -1104 -35 -204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 21 E= 2.6e+000 0.142857 0.047619 0.238095 0.571429 0.190476 0.000000 0.238095 0.571429 0.095238 0.000000 0.095238 0.809524 0.523810 0.000000 0.333333 0.142857 0.714286 0.285714 0.000000 0.000000 0.428571 0.000000 0.190476 0.380952 0.000000 0.000000 0.857143 0.142857 0.904762 0.000000 0.095238 0.000000 0.428571 0.000000 0.142857 0.428571 0.857143 0.000000 0.000000 0.142857 0.952381 0.047619 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.333333 0.238095 0.428571 0.000000 0.476190 0.000000 0.000000 0.523810 0.428571 0.000000 0.428571 0.142857 0.714286 0.000000 0.238095 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRAWGAWAAAVWRA MEME-9 regular expression -------------------------------------------------------------------------------- [TG][TG]T[AG][AC][AT]GA[AT]AAA[GAC][TA][AG][AG] -------------------------------------------------------------------------------- Time 3918.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 width = 41 sites = 4 llr = 161 E-value = 3.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 3:85:::333::::3:3:8::::5:a:35:3::a3:3:5:3 pos.-specific C :8:5:::8::3::a::3a:a3:::5::8::::8:8:::::: probability G ::::8:8:885::::8::3:8:a55:3:388:3::a:a:a8 matrix T 833:3a3:::3aa:835::::a::::8:33:a::::8:5:: bits 2.4 * ** * * * * 2.1 * ** * * * * 1.9 * ** * * * * 1.6 * * * **** * * ** * * * *** * Relative 1.4 * * * **** *** ** ** * * ***** Entropy 1.2 *** ****** ***** *** ** *** *** ******** (57.9 bits) 0.9 ********** ***** ******* *** ************ 0.7 ********** ****************************** 0.5 ***************************************** 0.2 ***************************************** 0.0 ----------------------------------------- Multilevel TCAAGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGAGG consensus ATTCT TAAAC ATA G C GG GAGTA G A A T A sequence T C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------- chr10:50067633-50068133 + 30 4.42e-24 GCAGGTCGGA TCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGAGG CCGGTCACGC chr10:45726938-45727438 + 37 4.42e-24 GCAGGTCGGA TCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGAGG CCGGTCACGC chr17:51121700-51122200 + 2 1.59e-17 G ACAAGTGAGGTTTCTGCCGCCTGGGAGAGTGTCACGTGTGG GGAATGACAC chr9:85743288-85743788 - 18 5.08e-17 AGAGGTGAAG TTTATTTCAACTTCATACACGTGGGATCTGATGAAGAGTGA TGTCACATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:50067633-50068133 4.4e-24 29_[+10]_30 chr10:45726938-45727438 4.4e-24 36_[+10]_23 chr17:51121700-51122200 1.6e-17 1_[+10]_58 chr9:85743288-85743788 5.1e-17 17_[-10]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG width=41 seqs=4 chr10:50067633-50068133 ( 30) TCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGAGG 1 chr10:45726938-45727438 ( 37) TCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGAGG 1 chr17:51121700-51122200 ( 2) ACAAGTGAGGTTTCTGCCGCCTGGGAGAGTGTCACGTGTGG 1 chr9:85743288-85743788 ( 18) TTTATTTCAACTTCATACACGTGGGATCTGATGAAGAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 36000 bayes= 12.2874 E= 3.8e+001 35 -865 -865 194 -865 130 -865 35 194 -865 -865 35 135 71 -865 -865 -865 -865 130 35 -865 -865 -865 235 -865 -865 130 35 35 130 -865 -865 35 -865 130 -865 35 -865 130 -865 -865 -28 71 35 -865 -865 -865 235 -865 -865 -865 235 -865 171 -865 -865 35 -865 -865 194 -865 -865 130 35 35 -28 -865 135 -865 171 -865 -865 194 -865 -28 -865 -865 171 -865 -865 -865 -28 130 -865 -865 -865 -865 235 -865 -865 171 -865 135 -865 71 -865 -865 71 71 -865 235 -865 -865 -865 -865 -865 -28 194 35 130 -865 -865 135 -865 -28 35 -865 -865 130 35 35 -865 130 -865 -865 -865 -865 235 -865 130 -28 -865 235 -865 -865 -865 35 130 -865 -865 -865 -865 171 -865 35 -865 -865 194 -865 -865 171 -865 135 -865 -865 135 -865 -865 171 -865 35 -865 130 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 4 E= 3.8e+001 0.250000 0.000000 0.000000 0.750000 0.000000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.750000 0.250000 0.250000 0.250000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.250000 0.750000 0.000000 0.000000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 0.750000 0.250000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAMGTGCGGBTTCTGHCACGTGRSATCDGGTCACGTGWGG MEME-10 regular expression -------------------------------------------------------------------------------- [TA][CT][AT][AC][GT]T[GT][CA][GA][GA][GCT]TTC[TA][GT][TAC]C[AG]C[GC]TG[AG][CG]A[TG][CA][AGT][GT][GA]T[CG]A[CA]G[TA]G[AT]G[GA] -------------------------------------------------------------------------------- Time 4305.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:75023444-75023944 4.97e-09 23_[+7(6.33e-07)]_36_[-4(9.56e-08)]_\ 3 chr18:31206871-31207371 3.69e-03 37_[-7(1.25e-05)]_47 chr16:12120420-12120920 9.88e-12 35_[-1(4.85e-11)]_34 chr10:51699443-51699943 1.94e-01 100 chr16:2267850-2268350 5.64e-03 5_[-7(2.13e-05)]_1_[-3(1.11e-05)]_\ 56 chr17:51120889-51121389 4.68e-02 100 chr10:88342637-88343137 1.45e-05 57_[-4(2.56e-09)]_8_[-2(1.43e-05)]_\ 4 chr14:64986720-64987220 2.40e-02 60_[-3(9.34e-07)]_18 chr20:45934491-45934991 3.68e-01 100 chr6:28349735-28350235 1.79e-01 24_[-4(2.42e-05)]_54 chr7:100100455-100100955 7.97e-01 100 chr18:63367442-63367942 9.42e-01 100 chr8:10839748-10840248 9.51e-04 13_[+3(1.22e-06)]_65 chr19:33274042-33274542 4.93e-15 69_[-1(1.51e-13)] chr19:39406786-39407286 1.02e-01 35_[-7(6.90e-05)]_49 chr5:119268303-119268803 8.59e-01 100 chr12:56126084-56126584 6.82e-02 26_[-3(3.18e-05)]_52 chr11:120346987-12034748 4.71e-21 5_[-4(2.01e-07)]_20_[-3(1.63e-09)]_\ [-1(1.15e-12)] chr3:194003264-194003764 4.86e-01 100 chr19:40831929-40832429 2.23e-02 75_[+3(7.95e-05)]_3 chr17:50169207-50169707 2.35e-24 7_[+1(8.30e-20)]_62 chr7:27165481-27165981 9.75e-04 16_[-9(2.31e-07)]_42_[+4(4.69e-06)]_\ 4 chr8:37479292-37479792 4.23e-01 100 chr12:31728871-31729371 8.69e-03 67_[+2(1.43e-05)]_24 chr17:73310517-73311017 2.56e-26 27_[+1(8.30e-20)]_[+4(6.86e-08)]_20 chr1:151070392-151070892 8.66e-02 76_[-4(5.40e-05)]_2 chr17:42763331-42763831 2.56e-01 41_[+2(2.35e-05)]_50 chr19:9621163-9621663 3.18e-02 18_[+3(1.11e-05)]_60 chr5:92552232-92552732 3.31e-02 51_[+4(5.40e-05)]_27 chr2:216498482-216498982 2.39e-01 100 chr21:39380938-39381438 2.44e-02 77_[+2(6.92e-05)]_1_[+2(2.35e-05)]_\ 4 chr1:155000834-155001334 8.55e-01 100 chr19:39033050-39033550 9.21e-04 57_[+4(1.32e-07)]_[+2(6.92e-05)]_12 chr2:166375957-166376457 4.86e-21 62_[-1(8.51e-16)]_7 chr3:168096018-168096518 1.46e-25 32_[-1(8.30e-20)]_37 chr5:139747046-139747546 2.85e-08 10_[+4(9.23e-06)]_20_[-5(4.20e-05)]_\ 7 chr17:13601943-13602443 5.21e-02 13_[-3(4.50e-05)]_65 chr19:39126598-39127098 3.62e-02 58_[+9(4.73e-05)]_26 chr19:34999895-35000395 1.35e-05 34_[-3(2.89e-08)]_20_[-7(9.16e-05)]_\ 8 chr1:28648546-28649046 2.57e-08 58_[-4(2.92e-10)]_20 chr10:101569981-10157048 2.56e-03 45_[-2(6.92e-05)]_[-3(8.59e-05)]_24 chr9:128340089-128340589 7.16e-02 65_[+7(1.45e-06)]_19 chr17:79993485-79993985 9.13e-01 100 chr13:113314753-11331525 8.48e-05 23_[+2(1.43e-05)]_5_[-8(1.04e-07)]_\ 11_[+2(1.43e-05)]_21 chrX:41333185-41333685 4.39e-07 39_[-3(1.24e-08)]_22_[-7(2.57e-07)]_\ 1 chr20:327057-327557 2.27e-01 100 chr6:37169478-37169978 4.10e-05 21_[-4(1.04e-06)]_10_[-3(2.91e-05)]_\ 25 chr7:65982015-65982515 7.20e-01 100 chr22:42648698-42649198 3.00e-09 3_[+4(5.91e-06)]_16_[+1(1.40e-10)]_\ 28 chr5:141968947-141969447 4.67e-01 100 chr19:17511803-17512303 8.43e-01 100 chr3:128123756-128124256 1.46e-01 53_[-2(6.92e-05)]_38 chr19:35628730-35629230 4.12e-04 4_[-3(9.07e-06)]_15_[+2(2.35e-05)]_\ 50 chr15:74695799-74696299 5.83e-01 100 chr20:50166008-50166508 2.59e-06 3_[-8(1.12e-07)]_53_[+2(6.92e-05)]_\ 13 chr10:77287734-77288234 2.93e-01 100 chr7:133492163-133492663 1.54e-05 50_[-4(2.12e-08)]_28 chr7:135510158-135510658 2.56e-01 100 chr8:22574301-22574801 1.48e-01 9_[+3(3.47e-05)]_69 chr1:15526557-15527057 9.16e-01 100 chr10:72354700-72355200 9.06e-04 6_[+3(3.33e-06)]_7_[+7(1.35e-05)]_\ 49 chr9:38672291-38672791 4.66e-02 75_[-2(2.35e-05)]_16 chr10:74825653-74826153 2.59e-03 6_[+3(6.79e-05)]_36_[+3(1.59e-06)]_\ 14 chr12:54288422-54288922 6.10e-05 1_[+4(1.13e-06)]_11_[+5(2.35e-06)]_\ 25 chr12:54359085-54359585 3.03e-02 71_[+3(6.13e-07)]_7 chr3:155854348-155854848 2.50e-01 64_[+2(4.57e-05)]_27 chr19:40569728-40570228 1.51e-22 9_[+1(8.30e-20)]_1_[+1(1.35e-16)]_3_\ [+8(1.11e-10)]_3 chr14:103520902-10352140 7.68e-05 37_[-3(6.14e-09)]_16_[-2(6.92e-05)]_\ 16 chr5:181187993-181188493 5.39e-17 15_[+4(7.98e-06)]_1_[+2(6.92e-05)]_\ 2_[+5(1.37e-19)]_10 chr3:9396757-9397257 6.99e-02 50_[-2(6.92e-05)]_41 chr1:31155257-31155757 3.38e-01 58_[-2(6.92e-05)]_33 chr19:41884051-41884551 5.04e-02 38_[-6(1.14e-05)]_42 chr5:132963572-132964072 9.32e-01 100 chr1:93345568-93346068 8.66e-04 57_[+7(1.42e-08)]_2_[-2(2.35e-05)]_\ 16 chr19:36916390-36916890 9.02e-17 14_[+9(1.73e-05)]_15_[-1(5.67e-13)]_\ 24 chr6:150142560-150143060 1.89e-02 45_[-2(8.94e-05)]_5_[-7(5.10e-05)]_\ 25 chr6:42563632-42564132 8.24e-05 43_[+6(2.68e-10)]_37 chr17:8383581-8384081 6.65e-01 100 chr15:59953507-59954007 1.16e-03 55_[-3(3.33e-06)]_23 chr19:4869968-4870468 2.34e-01 62_[-2(7.51e-05)]_29 chr1:233326961-233327461 4.14e-03 49_[-3(3.75e-06)]_29 chrX:118495415-118495915 2.53e-03 [-3(1.01e-05)]_78 chr5:1633752-1634252 4.83e-01 100 chr7:116218149-116218649 1.47e-05 42_[+9(2.19e-09)]_7_[+9(6.57e-05)]_\ 19 chr1:31938332-31938832 2.27e-02 67_[+3(7.33e-06)]_11 chr19:33521551-33522051 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chr16:30775172-30775672 1.32e-03 64_[-6(4.85e-10)]_16 chr19:38683955-38684455 1.04e-03 52_[-4(2.67e-06)]_8_[-2(6.92e-05)]_\ 9 chr1:207321295-207321795 1.53e-01 100 chr4:77075929-77076429 4.54e-03 55_[+3(3.75e-06)]_23 chr10:75379164-75379664 4.00e-01 59_[+9(6.81e-05)]_25 chr5:93582517-93583017 2.18e-28 23_[-7(4.07e-06)]_16_[-1(1.94e-17)]_\ 14 chr5:59303215-59303715 1.76e-02 6_[-4(4.47e-07)]_43_[+4(9.99e-05)]_\ 7 chr18:35497783-35498283 6.69e-01 100 chr20:32357740-32358240 1.85e-01 79_[+6(9.52e-05)]_1 chr5:181246145-181246645 3.21e-04 4_[-9(4.61e-08)]_80 chr9:133417907-133418407 9.99e-01 100 chr1:208184288-208184788 4.86e-05 3_[-9(9.85e-05)]_22_[+7(4.16e-07)]_\ 43 chr16:29805287-29805787 3.36e-03 35_[+7(5.86e-06)]_49 chr12:105330233-10533073 1.51e-02 3_[+3(1.11e-05)]_46_[-2(1.43e-05)]_\ 20 chr6:168147170-168147670 1.11e-05 17_[+9(3.59e-08)]_34_[+4(8.64e-07)]_\ 11 chr19:36214329-36214829 2.27e-01 63_[-2(4.57e-05)]_28 chr21:25607274-25607774 1.69e-02 29_[-3(1.40e-06)]_49 chr16:23149339-23149839 2.18e-01 100 chr1:234723906-234724406 1.51e-07 14_[+3(2.16e-10)]_13_[+3(2.36e-08)]_\ 29 chr10:45726938-45727438 1.90e-16 7_[-7(8.19e-05)]_13_[+10(4.42e-24)]_\ 23 chr19:3022683-3023183 1.97e-08 40_[+2(1.43e-05)]_6_[+4(1.46e-08)]_\ 23 chr19:35819850-35820350 3.03e-23 7_[+1(8.30e-20)]_1_[+1(1.85e-09)]_\ 30 chr1:241998479-241998979 9.42e-03 52_[+8(8.71e-05)]_26 chr19:40420970-40421470 2.76e-02 32_[-7(1.35e-05)]_52 chr12:121888502-12188900 4.72e-02 16_[-2(4.57e-05)]_75 chr19:17337103-17337603 5.75e-03 4_[-3(2.42e-05)]_74 chr1:32702931-32703431 1.83e-01 81_[+2(4.57e-05)]_10 chr19:35758156-35758656 1.11e-01 100 chr19:17334709-17335209 9.79e-03 29_[-3(6.79e-05)]_49 chr19:35154633-35155133 1.68e-03 53_[-3(4.89e-05)]_1_[-7(1.35e-05)]_\ 8 chr1:3403675-3404175 4.45e-03 43_[+9(1.95e-06)]_41 chr19:40444347-40444847 8.08e-02 100 chrX:73944014-73944514 8.37e-01 100 chr19:35947347-35947847 1.65e-25 [+6(4.55e-05)]_31_[-1(8.30e-20)]_18 chr1:25998131-25998631 3.33e-02 100 chr8:25458843-25459343 1.65e-02 44_[+10(8.67e-05)]_15 chr6:82260149-82260649 8.76e-03 17_[-4(4.69e-06)]_61 chr1:155244573-155245073 2.08e-03 16_[+3(1.28e-07)]_8_[+3(3.39e-07)]_\ 8_[+3(3.53e-11)]_2 chr19:38975245-38975745 3.33e-01 100 chr15:75347346-75347846 5.15e-06 13_[+6(9.34e-09)]_67 chr5:37371034-37371534 2.28e-08 11_[+2(2.35e-05)]_35_[+3(6.41e-10)]_\ 23 chr1:156572299-156572799 4.48e-02 21_[-3(1.81e-06)]_57 chr17:41689236-41689736 9.03e-02 70_[+2(6.92e-05)]_21 chr19:18571485-18571985 1.35e-02 60_[+7(6.33e-07)]_24 chr12:12266963-12267463 3.44e-01 100 chr17:40140132-40140632 1.06e-22 1_[+1(6.14e-13)]_9_[+1(8.30e-20)]_1_\ [+8(3.33e-12)]_5 chr6:3251400-3251900 2.66e-01 100 chr9:136727970-136728470 4.06e-01 74_[-2(4.57e-05)]_17 chr19:40690666-40691166 2.09e-02 40_[+10(3.66e-05)]_19 chr19:55643332-55643832 2.08e-04 63_[-7(1.84e-05)]_21 chr15:65869086-65869586 9.61e-02 100 chr2:109213954-109214454 6.40e-02 41_[+9(3.58e-05)]_43 chr19:35643428-35643928 5.74e-01 100 chr1:28581593-28582093 2.35e-01 100 chr5:40835046-40835546 1.41e-01 72_[+3(8.59e-05)]_6 chr16:89917742-89918242 1.22e-01 44_[-2(1.43e-05)]_47 chr19:40603618-40604118 4.94e-04 54_[-7(4.12e-08)]_3_[-3(1.36e-05)]_\ 5 chr19:4247411-4247911 1.52e-22 [-1(8.30e-20)]_1_[-1(8.30e-20)]_\ [-8(3.33e-12)]_15 chr17:59619583-59620083 1.08e-01 100 chr1:228458437-228458937 9.87e-20 17_[-1(1.78e-16)]_52 chr8:37302629-37303129 2.63e-02 57_[+6(9.52e-05)]_23 chr20:47501594-47502094 2.01e-04 42_[+2(1.43e-05)]_5_[+6(6.14e-09)]_\ 24 chr19:56538300-56538800 4.48e-02 2_[-2(2.35e-05)]_62_[+7(8.33e-06)]_\ 11 chr20:45972085-45972585 2.00e-01 100 chr1:26620591-26621091 1.01e-02 100 chr14:64387693-64388193 1.65e-01 100 chr5:150449690-150450190 2.36e-02 1_[+3(1.40e-06)]_77 chr1:224615783-224616283 7.05e-02 100 chr1:27321867-27322367 3.64e-01 100 chr6:56844064-56844564 2.98e-02 49_[-7(6.98e-06)]_35 chr19:38336532-38337032 2.50e-04 37_[+3(1.28e-07)]_16_[+9(9.44e-07)]_\ 9 chr20:1118284-1118784 3.99e-01 14_[-2(1.43e-05)]_77 chr10:101830486-10183098 1.93e-20 [+1(1.04e-15)]_40_[+8(1.04e-07)]_7 chr17:80415106-80415606 9.99e-01 100 chr1:218285015-218285515 1.31e-01 4_[-2(8.94e-05)]_87 chr6:31547279-31547779 5.67e-02 69_[-3(5.90e-06)]_9 chr3:4986763-4987263 9.45e-01 100 chr17:7836717-7837217 1.65e-03 51_[-3(1.07e-06)]_27 chr10:50067633-50068133 4.30e-16 [-7(8.19e-05)]_13_[+10(4.42e-24)]_\ 30 chr1:159924365-159924865 3.85e-04 17_[-7(7.24e-07)]_13_[-2(7.51e-05)]_\ 28_[-7(6.50e-05)]_1 chr22:41468755-41469255 7.79e-01 100 chr3:194134802-194135302 4.06e-14 2_[-3(3.47e-05)]_14_[+1(4.02e-14)]_\ 31 chr19:39410128-39410628 3.37e-03 1_[-3(2.05e-06)]_14_[-2(4.57e-05)]_\ 18_[-3(1.83e-05)]_14 chr19:44259581-44260081 7.32e-04 65_[-6(1.00e-09)]_15 chr7:135232679-135233179 2.72e-01 100 chr2:197499757-197500257 4.59e-02 27_[-7(2.82e-05)]_57 chr3:9731347-9731847 3.75e-01 100 chr5:75511623-75512123 5.88e-06 53_[-6(8.27e-12)]_27 chr5:124740939-124741439 3.87e-03 8_[-4(5.96e-07)]_70 chr2:241881327-241881827 8.90e-26 53_[+2(1.43e-05)]_6_[-1(8.30e-20)]_\ 1 chr16:30482289-30482789 6.24e-02 100 chrX:48574031-48574531 6.93e-01 100 chr19:1652600-1653100 7.01e-01 100 chr12:49296438-49296938 1.28e-01 100 chr15:67254483-67254983 4.40e-01 68_[-2(8.94e-05)]_23 chr8:24954991-24955491 1.46e-02 16_[-7(7.24e-07)]_68 chr21:46635665-46636165 3.75e-01 100 chr1:40257846-40258346 2.98e-03 76_[+3(6.58e-06)]_2 chr19:41310145-41310645 5.45e-01 100 chr11:59557318-59557818 3.40e-04 77_[+4(1.81e-07)]_1 chr12:124914528-12491502 5.39e-02 100 chr17:42998041-42998541 7.00e-02 100 chr19:47778265-47778765 1.73e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kali ********************************************************************************