Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
TGTGTGTGTGTGTGTGTGTGTG | 22 | TGTGTGTGTGTGTGTGTGTGTG |
YTYCCTCCCYYYCTYY | 16 | CTCCCTCCCTCTCTCC |
GCCCCGCCCCCYBCCC | 16 | GCCCCGCCCCCTCCCC |
TCTCGCGAGABT | 12 | TCTCGCGAGATT |
CCGGAAGTG | 9 | CCGGAAGTG |
HMAATAAWGTDTYHYWYBTTKW | 22 | ACAATAAAGTTTTATTTCTTTT |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | 50 | GTGAGCCGATGTCACGTGACCGTCGCCGCAGGTGACCCGGCGGGCCCGGC |
GYGTGYRTGYGYGTG | 15 | GTGTGTGTGTGTGTG |
YCBCTCCSTCYBYCSCYRYYTC | 22 | TCTCTCCCTCTCTCGCCATCTC |
GGGGARGVGTKTGDCSGNGACA | 22 | GGGGAAGGGTGTGACGGTGACA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.181 C 0.319 G 0.319 T 0.181
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr10 | - | 50067847 | 50067896 | 8.26e-24 | 4.2e-18 | GTGACCTGATGTCACGTGACAGAACCCGCACGTGATCCGACCTGCCATGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr10 | - | 45727159 | 45727208 | 2.53e-23 | 4.2e-18 | GTGACCTGATGTCACGTGACAGAACCCGCACGTGATCCGACCTGCGATGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr15 | - | 74100242 | 74100291 | 3.14e-23 | 4.2e-18 | GTTAGTCCAAGTCACGTGATCGTCGACTCAGCTGACCTGGCGGGACCGGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr15 | + | 75336005 | 75336054 | 3.14e-23 | 4.2e-18 | GTTAGTCCAAGTCACGTGATCGTCGACTCAGCTGACCCTGCGGGACCGGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr12 | + | 389161 | 389210 | 1.41e-08 | 0.00151 | GCCCGTTCAAGTCCCCTGACAGAGGCCGAAGCGCATCTTCGCGGACAAGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr1 | + | 151540505 | 151540554 | 6.64e-07 | 0.0593 | GTTGGCTGACATCACCTGGTGCCCGGCTCGCGCGGTCAGCCCTGCGCGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr11 | - | 66002087 | 66002136 | 2.05e-06 | 0.157 | CAGACTCAGACTCACGTCGCACTCCTCGCAGTTGGACTGGTGGGAACTGG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 40750505 | 40750554 | 5.07e-06 | 0.315 | CCTTTCCCATATCACGTGGTATTACACGCAACAGTTCCCGCCCATTTTGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr1 | - | 11806068 | 11806117 | 5.3e-06 | 0.315 | GAGGACTCGCGTCACATGACGATAAAGGCACGGCCTCCAACGAGACCTGT |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr12 | + | 122266469 | 122266518 | 6.36e-06 | 0.337 | CACGGACGCAGTCACGTGACCAAACGTCCACGTGACCGGTACGGCAGCGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr12 | + | 55716015 | 55716064 | 6.93e-06 | 0.337 | GGTTCCCAACCTCACGTGACACAGCGGTCACGTGACATGGCCCCGGGGAG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr12 | - | 55716011 | 55716060 | 8.26e-06 | 0.368 | CCGGGGCCATGTCACGTGACCGCTGTGTCACGTGAGGTTGGGAACCGCCC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr1 | + | 161117920 | 161117969 | 9.12e-06 | 0.375 | GGTACCCTGCTTCGCGTTAGCCACTCCTCACCTGCTCTGCGGACACCGCC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr10 | + | 50067851 | 50067900 | 1.21e-05 | 0.463 | GGCAGGTCGGATCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr2 | - | 72825748 | 72825797 | 1.47e-05 | 0.496 | GGTACCCCGGGTGCCGGGACCACAGAGGGGCGGGAACGGGCGGGACGGGG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr14 | + | 94026253 | 94026302 | 1.51e-05 | 0.496 | ATAGGCTGAAGGCACGTGAAGTCCCACCCACTTTCTATGACGTCCCGCGT |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr3 | - | 53347535 | 53347584 | 1.68e-05 | 0.496 | TTGCCTCGATGGCACTTTCCTGTCCGCGACTCCGCCCCCACCAGAGGGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr15 | + | 74100246 | 74100295 | 1.82e-05 | 0.496 | GTCCCGCCAGGTCAGCTGAGTCGACGATCACGTGACTTGGACTAACGGCC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr14 | + | 91060466 | 91060515 | 1.92e-05 | 0.496 | ACGAGGGGAACCCAGGAGACAGCGGACGCCCGTCCCCTCGCAGCCGCTGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr5 | + | 103120368 | 103120417 | 2e-05 | 0.496 | TACAACTGAAGTCTCTTGACAAACACCTCACCCCTGCCTCCGGGATGAAA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr5 | + | 134371097 | 134371146 | 2.03e-05 | 0.496 | GTGGATTGTTGACAAGGCCGCGGGCAGTCACGTGATCTTACATCATCCCA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr14 | - | 69191546 | 69191595 | 2.23e-05 | 0.496 | CTTACCTGCTGTCTCGGACTGGGCCGCACACCTGCAGCGGGCTCACGTTA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr12 | - | 116910952 | 116911001 | 2.28e-05 | 0.496 | TCCACCGGGTGCCACGAGACAGTCCCGCCCAGGGAAGTGTCCGCCGCGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 10653982 | 10654031 | 2.36e-05 | 0.496 | GCGTGCCCTCGTCACGTGATGGAGGACTCCCAGTACGGCAAAGGGAAGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr8 | + | 22245386 | 22245435 | 2.36e-05 | 0.496 | TCCGCCAGGGTCCGCGTGTCAGTCCCCTCTGGTGATCTCGTCGCCCCTTC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 10654114 | 10654163 | 2.47e-05 | 0.496 | AGGTGCCGAAGTCACGTGACTACGCACGCAAACACTCCCGCTTGCACCAC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr1 | + | 6199535 | 6199584 | 2.5e-05 | 0.496 | GAGGCCTCACGCGGAGCCATACTAACCACAGGAGCCATGGCGGCAGCGGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | - | 15125593 | 15125642 | 2.71e-05 | 0.519 | GGGGGTCGAGCTGGTGTGGGAGAACCACATCCTGATGCGATGTGACCTCG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 36572982 | 36573031 | 2.97e-05 | 0.548 | CTGTCACACGATCACGTCACCGTAGACCAGGGTCACACGATAGACCCCGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr15 | - | 75640249 | 75640298 | 3.33e-05 | 0.588 | GTGACTTTAAGTCTTTCTTTCATTGGCCCAGGGTCCCAGGCCGTCCAGGT |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 36605110 | 36605159 | 3.63e-05 | 0.588 | GTCACCTCAACTCACCACATGGAAAACGAACACCAGGTCAACGGAAAAGG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | - | 10333010 | 10333059 | 3.81e-05 | 0.588 | CTTGGGCGACACCAAGTGATGGAAGCGGGCGGGGAATGGAAGGGGGCGGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 39834206 | 39834255 | 3.81e-05 | 0.588 | ctccgctcccctcACGTGACCCACACTGACACTCCGCCTGCGCGAGATGG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 1021624 | 1021673 | 3.85e-05 | 0.588 | ttttGCTGTAGTCTACAGCTCGTCACCTCGTTTGGCTTCTCTTGCCCGGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 35643722 | 35643771 | 3.85e-05 | 0.588 | TTGGCTCGATGCCCCAAAACTAACCACCGAGGTGAGAGGGCCGCAAAGAC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr10 | + | 45727163 | 45727212 | 4.5e-05 | 0.665 | CGCAGGTCGGATCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 38224300 | 38224349 | 4.62e-05 | 0.665 | GGGAGTGGTAGTCCCAGGCCAGGGGGCCCCCGGGACCCCGCGGGGACGGG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr20 | - | 52972271 | 52972320 | 4.8e-05 | 0.665 | GCGACCTGATGACAGGGAGAAATTTACTCCCCAGCCGCAGAGCGCCAGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr12 | - | 57752541 | 57752590 | 4.89e-05 | 0.665 | GTGGCAGCCAGTCACGTGCCCGCCGCGTAGCCACACCTCTGCTCCTCAGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr16 | + | 30534653 | 30534702 | 4.97e-05 | 0.665 | GTCAGCCCCAGCGACGGATCGGTCATCTCCCCTGGCCAGGCCTGGGCATG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr7 | + | 128343745 | 128343794 | 5.18e-05 | 0.67 | GCGGGCCGAGGGCGGGAGGCGGCCCACAAATAAGGTCAGGCCGGCCATGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr16 | + | 71895270 | 71895319 | 5.27e-05 | 0.67 | CAGAGCGAAATTAAGGGCATGCCCCCAGCAGCTGACTCAGTCGGCGTGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr1 | + | 8878960 | 8879009 | 5.38e-05 | 0.67 | GTGAGCCGAACTGGGGTGTGCGGAGCCGGGGCTCCGGGGGATGGCCCGGG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 35987063 | 35987112 | 5.65e-05 | 0.687 | GTTCCTCGTTGTTTCTTCCCCGGGCACACCCGTGCTGCTCTCTGCGGGCA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr1 | + | 109100368 | 109100417 | 5.79e-05 | 0.689 | TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | - | 4723959 | 4724008 | 6.74e-05 | 0.785 | GTGATACCAAGTCACAGGGGGGTGTCTCTCCCTAACCCACCGGAAGATGT |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr22 | - | 24556052 | 24556101 | 7.39e-05 | 0.809 | TCGACCTCCCCTCGCCCGTCCCCAGCCTCACCGGCTCTGGCCTACTTTTC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr16 | + | 2682564 | 2682613 | 7.71e-05 | 0.809 | GCGAGCTCCTGTCGCCGGCCCGGGGCGGCATCGGGGCGGGGCTGGGGGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr9 | + | 36258540 | 36258589 | 7.71e-05 | 0.809 | GAGAGCTCGCGTGATTGGCTGCTCCCGTCCCCGTCCCCCACCTTCCCGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr8 | + | 11016537 | 11016586 | 7.76e-05 | 0.809 | CTGCCTGGCTGCCACCCGGAAGTCCCCGTCCGCGCCCCGACAGCGCCGCC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr20 | - | 41138017 | 41138066 | 7.97e-05 | 0.809 | GGGGTGTCCTGTCAGGTGACCGAGGACCCGGATGCCCCCCGCCCCCAGTG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr8 | + | 38382063 | 38382112 | 8.11e-05 | 0.809 | GGGAGGCCGAGGGACGGGGGTCGCCGCGCCGCCGCTGCTGCCAGAGAGGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr8 | - | 18084119 | 18084168 | 8.22e-05 | 0.809 | GCGGTCCCAGGTCGCGGGTCACGCGGCGGAGGGGGCGTGGCCTGCCCCCG |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 35879941 | 35879990 | 8.34e-05 | 0.809 | GGGGCTCAGAGGCCAGGGATAGGCGCCTGTCCTGGAGCTGTCCGCGGTGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr15 | - | 67254523 | 67254572 | 8.46e-05 | 0.809 | ACCAGCTGGTCCAACGTGAGTAGATAGGCGCCTGGGCCGACCTCCAAGGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | + | 15125470 | 15125519 | 8.79e-05 | 0.809 | GTCACCAAGAGGCACGAGGTCACGCCCCCGGGTTAGCGGGCGCGACCCTC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr22 | - | 37686513 | 37686562 | 8.85e-05 | 0.809 | GCCCCCGGCGGGAGCGTGCTCGGCCCCAGACCTGGCCTTGGCCGCGAAGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr15 | + | 72272676 | 72272725 | 9.05e-05 | 0.809 | GTGACACGATGGCACGTGGCCCGCTCCTGACCAACAGCCTGACGGCCTGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr9 | - | 85743668 | 85743717 | 9.14e-05 | 0.809 | GTAGCGTTCAGGGAAGTGGCTGACAGAGCACGCGATCTGCCACCCGCTGA |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr20 | + | 63520116 | 63520165 | 9.34e-05 | 0.809 | CAGCCTCTGCCTCCGGCGACTGGAGACTCACCTCACCCGCCCAAATCCGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr17 | - | 19508202 | 19508251 | 9.41e-05 | 0.809 | TGACCCCGACGTGACTTGAACACGCAACCTTCTGATCTGGAGTCAGACGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | - | 35880033 | 35880082 | 9.41e-05 | 0.809 | CTGAACAGATGGCAGGGGAAACTCGCTGGAGCCCAGCCTCCTTGGGGTCC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr9 | + | 137236467 | 137236516 | 9.52e-05 | 0.809 | GAGGGCCCTGGAGGGGGGGTCCCCGCGGCAGCTGACCTCCGGTCACCTGC |
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM | MEME-7 | chr19 | - | 42302591 | 42302640 | 9.8e-05 | 0.82 | GCTGGATGGTCTCGCCTCTCCCTCCCCCCACCCCGTGCCGGGTGCGCGGC |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.