Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
TGTGTGTGTGTGTGTGTGTGTG 22 TGTGTGTGTGTGTGTGTGTGTG
YTYCCTCCCYYYCTYY 16 CTCCCTCCCTCTCTCC
GCCCCGCCCCCYBCCC 16 GCCCCGCCCCCTCCCC
TCTCGCGAGABT 12 TCTCGCGAGATT
CCGGAAGTG 9 CCGGAAGTG
HMAATAAWGTDTYHYWYBTTKW 22 ACAATAAAGTTTTATTTCTTTT
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM 50 GTGAGCCGATGTCACGTGACCGTCGCCGCAGGTGACCCGGCGGGCCCGGC
GYGTGYRTGYGYGTG 15 GTGTGTGTGTGTGTG
YCBCTCCSTCYBYCSCYRYYTC 22 TCTCTCCCTCTCTCGCCATCTC
GGGGARGVGTKTGDCSGNGACA 22 GGGGAAGGGTGTGACGGTGACA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.181 C 0.319 G 0.319 T 0.181


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr10 - 50067847 50067896 8.26e-24 4.2e-18 GTGACCTGATGTCACGTGACAGAACCCGCACGTGATCCGACCTGCCATGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr10 - 45727159 45727208 2.53e-23 4.2e-18 GTGACCTGATGTCACGTGACAGAACCCGCACGTGATCCGACCTGCGATGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr15 - 74100242 74100291 3.14e-23 4.2e-18 GTTAGTCCAAGTCACGTGATCGTCGACTCAGCTGACCTGGCGGGACCGGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr15 + 75336005 75336054 3.14e-23 4.2e-18 GTTAGTCCAAGTCACGTGATCGTCGACTCAGCTGACCCTGCGGGACCGGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr12 + 389161 389210 1.41e-08 0.00151 GCCCGTTCAAGTCCCCTGACAGAGGCCGAAGCGCATCTTCGCGGACAAGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr1 + 151540505 151540554 6.64e-07 0.0593 GTTGGCTGACATCACCTGGTGCCCGGCTCGCGCGGTCAGCCCTGCGCGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr11 - 66002087 66002136 2.05e-06 0.157 CAGACTCAGACTCACGTCGCACTCCTCGCAGTTGGACTGGTGGGAACTGG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 40750505 40750554 5.07e-06 0.315 CCTTTCCCATATCACGTGGTATTACACGCAACAGTTCCCGCCCATTTTGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr1 - 11806068 11806117 5.3e-06 0.315 GAGGACTCGCGTCACATGACGATAAAGGCACGGCCTCCAACGAGACCTGT
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr12 + 122266469 122266518 6.36e-06 0.337 CACGGACGCAGTCACGTGACCAAACGTCCACGTGACCGGTACGGCAGCGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr12 + 55716015 55716064 6.93e-06 0.337 GGTTCCCAACCTCACGTGACACAGCGGTCACGTGACATGGCCCCGGGGAG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr12 - 55716011 55716060 8.26e-06 0.368 CCGGGGCCATGTCACGTGACCGCTGTGTCACGTGAGGTTGGGAACCGCCC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr1 + 161117920 161117969 9.12e-06 0.375 GGTACCCTGCTTCGCGTTAGCCACTCCTCACCTGCTCTGCGGACACCGCC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr10 + 50067851 50067900 1.21e-05 0.463 GGCAGGTCGGATCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr2 - 72825748 72825797 1.47e-05 0.496 GGTACCCCGGGTGCCGGGACCACAGAGGGGCGGGAACGGGCGGGACGGGG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr14 + 94026253 94026302 1.51e-05 0.496 ATAGGCTGAAGGCACGTGAAGTCCCACCCACTTTCTATGACGTCCCGCGT
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr3 - 53347535 53347584 1.68e-05 0.496 TTGCCTCGATGGCACTTTCCTGTCCGCGACTCCGCCCCCACCAGAGGGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr15 + 74100246 74100295 1.82e-05 0.496 GTCCCGCCAGGTCAGCTGAGTCGACGATCACGTGACTTGGACTAACGGCC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr14 + 91060466 91060515 1.92e-05 0.496 ACGAGGGGAACCCAGGAGACAGCGGACGCCCGTCCCCTCGCAGCCGCTGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr5 + 103120368 103120417 2e-05 0.496 TACAACTGAAGTCTCTTGACAAACACCTCACCCCTGCCTCCGGGATGAAA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr5 + 134371097 134371146 2.03e-05 0.496 GTGGATTGTTGACAAGGCCGCGGGCAGTCACGTGATCTTACATCATCCCA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr14 - 69191546 69191595 2.23e-05 0.496 CTTACCTGCTGTCTCGGACTGGGCCGCACACCTGCAGCGGGCTCACGTTA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr12 - 116910952 116911001 2.28e-05 0.496 TCCACCGGGTGCCACGAGACAGTCCCGCCCAGGGAAGTGTCCGCCGCGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 10653982 10654031 2.36e-05 0.496 GCGTGCCCTCGTCACGTGATGGAGGACTCCCAGTACGGCAAAGGGAAGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr8 + 22245386 22245435 2.36e-05 0.496 TCCGCCAGGGTCCGCGTGTCAGTCCCCTCTGGTGATCTCGTCGCCCCTTC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 10654114 10654163 2.47e-05 0.496 AGGTGCCGAAGTCACGTGACTACGCACGCAAACACTCCCGCTTGCACCAC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr1 + 6199535 6199584 2.5e-05 0.496 GAGGCCTCACGCGGAGCCATACTAACCACAGGAGCCATGGCGGCAGCGGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 - 15125593 15125642 2.71e-05 0.519 GGGGGTCGAGCTGGTGTGGGAGAACCACATCCTGATGCGATGTGACCTCG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 36572982 36573031 2.97e-05 0.548 CTGTCACACGATCACGTCACCGTAGACCAGGGTCACACGATAGACCCCGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr15 - 75640249 75640298 3.33e-05 0.588 GTGACTTTAAGTCTTTCTTTCATTGGCCCAGGGTCCCAGGCCGTCCAGGT
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 36605110 36605159 3.63e-05 0.588 GTCACCTCAACTCACCACATGGAAAACGAACACCAGGTCAACGGAAAAGG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 - 10333010 10333059 3.81e-05 0.588 CTTGGGCGACACCAAGTGATGGAAGCGGGCGGGGAATGGAAGGGGGCGGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 39834206 39834255 3.81e-05 0.588 ctccgctcccctcACGTGACCCACACTGACACTCCGCCTGCGCGAGATGG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 1021624 1021673 3.85e-05 0.588 ttttGCTGTAGTCTACAGCTCGTCACCTCGTTTGGCTTCTCTTGCCCGGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 35643722 35643771 3.85e-05 0.588 TTGGCTCGATGCCCCAAAACTAACCACCGAGGTGAGAGGGCCGCAAAGAC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr10 + 45727163 45727212 4.5e-05 0.665 CGCAGGTCGGATCACGTGCGGGTTCTGTCACGTGACATCAGGTCACGTGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 38224300 38224349 4.62e-05 0.665 GGGAGTGGTAGTCCCAGGCCAGGGGGCCCCCGGGACCCCGCGGGGACGGG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr20 - 52972271 52972320 4.8e-05 0.665 GCGACCTGATGACAGGGAGAAATTTACTCCCCAGCCGCAGAGCGCCAGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr12 - 57752541 57752590 4.89e-05 0.665 GTGGCAGCCAGTCACGTGCCCGCCGCGTAGCCACACCTCTGCTCCTCAGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr16 + 30534653 30534702 4.97e-05 0.665 GTCAGCCCCAGCGACGGATCGGTCATCTCCCCTGGCCAGGCCTGGGCATG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr7 + 128343745 128343794 5.18e-05 0.67 GCGGGCCGAGGGCGGGAGGCGGCCCACAAATAAGGTCAGGCCGGCCATGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr16 + 71895270 71895319 5.27e-05 0.67 CAGAGCGAAATTAAGGGCATGCCCCCAGCAGCTGACTCAGTCGGCGTGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr1 + 8878960 8879009 5.38e-05 0.67 GTGAGCCGAACTGGGGTGTGCGGAGCCGGGGCTCCGGGGGATGGCCCGGG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 35987063 35987112 5.65e-05 0.687 GTTCCTCGTTGTTTCTTCCCCGGGCACACCCGTGCTGCTCTCTGCGGGCA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr1 + 109100368 109100417 5.79e-05 0.689 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 - 4723959 4724008 6.74e-05 0.785 GTGATACCAAGTCACAGGGGGGTGTCTCTCCCTAACCCACCGGAAGATGT
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr22 - 24556052 24556101 7.39e-05 0.809 TCGACCTCCCCTCGCCCGTCCCCAGCCTCACCGGCTCTGGCCTACTTTTC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr16 + 2682564 2682613 7.71e-05 0.809 GCGAGCTCCTGTCGCCGGCCCGGGGCGGCATCGGGGCGGGGCTGGGGGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr9 + 36258540 36258589 7.71e-05 0.809 GAGAGCTCGCGTGATTGGCTGCTCCCGTCCCCGTCCCCCACCTTCCCGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr8 + 11016537 11016586 7.76e-05 0.809 CTGCCTGGCTGCCACCCGGAAGTCCCCGTCCGCGCCCCGACAGCGCCGCC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr20 - 41138017 41138066 7.97e-05 0.809 GGGGTGTCCTGTCAGGTGACCGAGGACCCGGATGCCCCCCGCCCCCAGTG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr8 + 38382063 38382112 8.11e-05 0.809 GGGAGGCCGAGGGACGGGGGTCGCCGCGCCGCCGCTGCTGCCAGAGAGGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr8 - 18084119 18084168 8.22e-05 0.809 GCGGTCCCAGGTCGCGGGTCACGCGGCGGAGGGGGCGTGGCCTGCCCCCG
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 35879941 35879990 8.34e-05 0.809 GGGGCTCAGAGGCCAGGGATAGGCGCCTGTCCTGGAGCTGTCCGCGGTGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr15 - 67254523 67254572 8.46e-05 0.809 ACCAGCTGGTCCAACGTGAGTAGATAGGCGCCTGGGCCGACCTCCAAGGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 + 15125470 15125519 8.79e-05 0.809 GTCACCAAGAGGCACGAGGTCACGCCCCCGGGTTAGCGGGCGCGACCCTC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr22 - 37686513 37686562 8.85e-05 0.809 GCCCCCGGCGGGAGCGTGCTCGGCCCCAGACCTGGCCTTGGCCGCGAAGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr15 + 72272676 72272725 9.05e-05 0.809 GTGACACGATGGCACGTGGCCCGCTCCTGACCAACAGCCTGACGGCCTGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr9 - 85743668 85743717 9.14e-05 0.809 GTAGCGTTCAGGGAAGTGGCTGACAGAGCACGCGATCTGCCACCCGCTGA
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr20 + 63520116 63520165 9.34e-05 0.809 CAGCCTCTGCCTCCGGCGACTGGAGACTCACCTCACCCGCCCAAATCCGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr17 - 19508202 19508251 9.41e-05 0.809 TGACCCCGACGTGACTTGAACACGCAACCTTCTGATCTGGAGTCAGACGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 - 35880033 35880082 9.41e-05 0.809 CTGAACAGATGGCAGGGGAAACTCGCTGGAGCCCAGCCTCCTTGGGGTCC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr9 + 137236467 137236516 9.52e-05 0.809 GAGGGCCCTGGAGGGGGGGTCCCCGCGGCAGCTGACCTCCGGTCACCTGC
GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM MEME-7 chr19 - 42302591 42302640 9.8e-05 0.82 GCTGGATGGTCTCGCCTCTCCCTCCCCCCACCCCGTGCCGGGTGCGCGGC

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GTKASYYSAWGTCACGTGAYMGWMSMCKCASSTGAYCCGRCSKGMCMKGM /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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