# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Tue May 01 08:01:11 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Tue May 01 08:01:11 PDT 2018)
#        host: indra
#        when: Tue May 01 08:49:44 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.175 C 0.326 G 0.317 T 0.183


MOTIF SCGGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      SCGGAA     TTCCGS        190         67   1.3e-018   4.1e-014
#           CCGGAA     TTCCGG        115         38   1.0e-011   3.1e-007
#           GCGGAA     TTCCGC        103         31   1.4e-011   4.3e-007

letter-probability matrix: alength= 4 w= 6 nsites= 247 E= 4.1e-014
0.000000 0.550607 0.449393 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGGGGCGK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGGGCGK   MCGCCCCC         84         23   2.2e-010   6.6e-006
#         GGGGGCGT   ACGCCCCC         30          3   5.2e-007   1.6e-002
#         GGGGGCGG   CCGCCCCC         58         20   5.1e-006   1.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 6.6e-006
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.648352 0.351648


MOTIF CGCGAGAD DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCGAGAD   HTCTCGCG         39          4   9.3e-009   2.8e-004
#         CGCGAGAA   TTCTCGCG         16          0   1.4e-005   4.1e-001
#         CGCGAGAG   CTCTCGCG         19          3   3.9e-004   1.2e+001
#         CGCGAGAT   ATCTCGCG         10          1   5.7e-003   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 2.8e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.391304 0.000000 0.434783 0.173913


MOTIF ACGTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACGTGA     TCACGT         43          7   6.0e-008   1.8e-003
#           ACGTGA     TCACGT         43          7   6.0e-008   1.8e-003

letter-probability matrix: alength= 4 w= 6 nsites= 59 E= 1.8e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCGGAGS DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GCGGAGS    SCTCCGC         92         40   9.8e-007   2.9e-002
#          GCGGAGG    CCTCCGC         64         28   6.2e-005   1.8e+000
#          GCGGAGC    GCTCCGC         33         12   1.0e-003   3.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 104 E= 2.9e-002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.317308 0.682692 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 25.84 seconds