# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:46 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:46 PST 2017)
#        host: surya
#        when: Mon Dec 18 16:07:22 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.173 C 0.327 G 0.325 T 0.175


MOTIF CMCGCCCM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CMCGCCCM   KGGGCGKG        222         39   2.5e-040   6.8e-036
#         CACGCCCA   TGGGCGTG         58          5   2.5e-013   6.7e-009
#         CACGCCCC   GGGGCGTG         63          7   2.9e-013   7.9e-009
#         CCCGCCCC   GGGGCGGG         90         21   1.3e-012   3.6e-008
#         CCCGCCCA   TGGGCGGG         51          8   2.0e-009   5.6e-005

letter-probability matrix: alength= 4 w= 8 nsites= 310 E= 6.8e-036
0.000000 1.000000 0.000000 0.000000
0.503226 0.496774 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.445161 0.554839 0.000000 0.000000


MOTIF TCCRCCCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCRCCCA   TGGGYGGA         63         15   6.8e-009   1.8e-004
#         TCCGCCCA   TGGGCGGA         33          5   1.5e-006   4.1e-002
#         TCCACCCA   TGGGTGGA         33         10   2.4e-004   6.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 1.8e-004
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.654545 0.000000 0.345455 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTTCCGS DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCGS   SCGGAAGT         24          1   6.2e-007   1.7e-002
#         ACTTCCGG   CCGGAAGT         16          0   1.4e-005   3.7e-001
#         ACTTCCGC   GCGGAAGT         10          1   5.7e-003   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.7e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.384615 0.615385 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 14.88 seconds