******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:30021492-30021992 1.0000 100 chr21:35578287-35578787 1.0000 100 chr1:245464285-245464785 1.0000 100 chr19:44844627-44845127 1.0000 100 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chr1:45521619-45522119 1.0000 100 chr1:234373431-234373931 1.0000 100 chr20:1118281-1118781 1.0000 100 chr19:1652608-1653108 1.0000 100 chr17:993480-993980 1.0000 100 chr19:58519587-58520087 1.0000 100 chr17:7242762-7243262 1.0000 100 chr1:154558610-154559110 1.0000 100 chr14:101947909-10194840 1.0000 100 chr12:122752517-12275301 1.0000 100 chr17:77233791-77234291 1.0000 100 chr8:94719580-94720080 1.0000 100 chr16:21599269-21599769 1.0000 100 chr17:45161293-45161793 1.0000 100 chr12:49060553-49061053 1.0000 100 chr12:52903323-52903823 1.0000 100 chr11:69376959-69377459 1.0000 100 chr22:37686122-37686622 1.0000 100 chr1:3992023-3992523 1.0000 100 chr1:44213171-44213671 1.0000 100 chr7:141551105-141551605 1.0000 100 chr12:132161226-13216172 1.0000 100 chr1:30191256-30191756 1.0000 100 chr19:35903617-35904117 1.0000 100 chr1:212791591-212792091 1.0000 100 chr1:9943141-9943641 1.0000 100 chr3:9731390-9731890 1.0000 100 chrX:1452844-1453344 1.0000 100 chrX:73944034-73944534 1.0000 100 chr19:6161239-6161739 1.0000 100 chr17:45148353-45148853 1.0000 100 chr16:67872796-67873296 1.0000 100 chr17:63842491-63842991 1.0000 100 chr22:24555566-24556066 1.0000 100 chr1:27321872-27322372 1.0000 100 chr19:35947352-35947852 1.0000 100 chr19:55643335-55643835 1.0000 100 chr10:50067627-50068127 1.0000 100 chr12:132303742-13230424 1.0000 100 chr16:2603099-2603599 1.0000 100 chr15:72231095-72231595 1.0000 100 chr19:1383508-1384008 1.0000 100 chr1:236097021-236097521 1.0000 100 chr21:6565242-6565742 1.0000 100 chr21:45442671-45443171 1.0000 100 chr19:3721358-3721858 1.0000 100 chr1:183471823-183472323 1.0000 100 chr6:157323317-157323817 1.0000 100 chr19:39125700-39126200 1.0000 100 chr10:93702412-93702912 1.0000 100 chr15:65868938-65869438 1.0000 100 chr1:228109115-228109615 1.0000 100 chr19:38335537-38336037 1.0000 100 chr5:134371107-134371607 1.0000 100 chr17:21235862-21236362 1.0000 100 chr19:8922528-8923028 1.0000 100 chr15:65610891-65611391 1.0000 100 chr1:30651335-30651835 1.0000 100 chr19:46600772-46601272 1.0000 100 chr1:125179934-125180434 1.0000 100 chr20:58650940-58651440 1.0000 100 chr16:89008655-89009155 1.0000 100 chr1:54715566-54716066 1.0000 100 chr19:35557948-35558448 1.0000 100 chr19:58380524-58381024 1.0000 100 chr15:67254477-67254977 1.0000 100 chr19:41310147-41310647 1.0000 100 chr17:78558302-78558802 1.0000 100 chr16:1271747-1272247 1.0000 100 chr16:30957581-30958081 1.0000 100 chr12:132828715-13282921 1.0000 100 chr12:12266863-12267363 1.0000 100 chr2:241881406-241881906 1.0000 100 chr19:17337119-17337619 1.0000 100 chr17:17206339-17206839 1.0000 100 chr12:1907490-1907990 1.0000 100 chr21:46264659-46265159 1.0000 100 chr17:7836726-7837226 1.0000 100 chr21:44810770-44811270 1.0000 100 chr21:39313474-39313974 1.0000 100 chr6:169840095-169840595 1.0000 100 chr9:132944450-132944950 1.0000 100 chr16:88882218-88882718 1.0000 100 chr10:101830482-10183098 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.173 C 0.327 G 0.327 T 0.173 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.182 C 0.318 G 0.318 T 0.182 ******************************************************************************** ******************************************************************************** MOTIF GTGGGYGKGGCYGKGKGKGGGS MEME-1 width = 22 sites = 256 llr = 2132 E-value = 2.4e-104 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:::1::12121112222122 pos.-specific C :1:::6:::1542221211112 probability G 83a99:a585216565557664 matrix T :5:1:3:512132212121212 bits 2.5 2.2 2.0 1.7 * Relative 1.5 * * Entropy 1.2 *** * (12.0 bits) 1.0 * *** * 0.7 * ******* 0.5 ********* * 0.2 ********************* 0.0 ---------------------- Multilevel GTGGGCGGGGCCGGGGGGGGGG consensus G T T TGT T TAT C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr16:88882218-88882718 + 31 8.80e-09 GGCTGTGTGC GTGGGCGTGGCTGTGTGCGTGG GGGTGGCTGT chr19:17209605-17210105 + 16 1.18e-08 TGGGGTCTTG GTGGGCGGGGCCTTGGGTGGGC AGGACCTCCC chr8:142008278-142008778 - 16 1.56e-08 GTCTGGGTGT GTGGGTGTGTCTGTGTGGTGGG TGTGGTGTGT chr6:169840095-169840595 - 46 2.69e-08 GTGGTCTGGA GTGGGCGTGGGTGGGTGTGGTG TGGAGTGGGC chr19:35557948-35558448 + 18 2.69e-08 AGGAGAAGCT GTGGGCGGGGCTGGGTGGTGGG CGGGGCCTTG chr5:180594705-180595205 + 49 3.48e-08 gagggtatgt gtgggtgtgtgagtgtgtgtgg ggtgtgtgtg chr19:33412865-33413365 - 54 3.48e-08 GTGTGTCTAT GTGGGTGTGGCTGCGTGGGGAC CAGTGCTGCT chr1:111989955-111990455 + 56 4.48e-08 gtgagtgcgt gtgtgtgtgtctgtgtgtgtgg agaggggcgc chr10:7378546-7379046 + 60 4.48e-08 tggctgtggg gtgggcgtgagtgtgggtgtga gtgtatggat chr12:132305298-13230579 - 67 7.28e-08 GTGCCCGGGT GAGGGCGTGTCTGGGTGAGGGT GTGCCCCGGT chr19:6161239-6161739 + 29 9.20e-08 aggaaaggaa GTGGGTGGGGCCTTGTGAGGAA AGTGGGTGTG chr19:1690727-1691227 - 58 9.20e-08 GGCGGGGCAG GTGGGCGTGGCTTTGGTGGAGG GGCGCTGCCT chr19:40598041-40598541 - 72 9.20e-08 CTCTCAG GTGGGTGGGGCCGAGTGGAGGA TGAGGCCATC chr21:44810770-44811270 - 68 1.16e-07 GTGTGTATGT GTGGGTGTGTGCGTGTGTGTAT GTGGGTGTGT chr10:72215765-72216265 - 7 1.16e-07 CCGTGCCGTG GTGGGCGTGGCCGGGGCGGAGA CGCGAG chr1:245464285-245464785 + 60 1.16e-07 gtgggtgtgc gtgggtgtgttcctgtgtgggt gtgtgggtgt chr19:6677824-6678324 + 67 1.45e-07 tgacaatggt gtgggcgtggcatgggcggggc AGTCGGGCGG chr19:8922528-8923028 + 75 1.80e-07 GCTAAAATCA GTGGGTGGGGCAGGGAAAGGTG TCTG chr1:31387508-31388008 - 21 1.80e-07 GGTCATCTGT GTGGATGTGTCTGGGGGTGTGG ATGGTGAGGT chr19:40570505-40571005 + 32 2.23e-07 CGGTGAGCGT GTGGGCGGGGCTTTGGAAGGCG GGTCTCAGGC chr16:1342857-1343357 + 54 2.75e-07 TCGTGGCTGG GAGGGTGGGGCAGGGAAAGGGG CGGTGCTGAG chr19:17762620-17763120 - 52 4.13e-07 CTACAGGATG GTGGGCGTGGCCTCTGGTGGAT GGGGCTTGGG chr16:84735819-84736319 + 25 4.13e-07 ACTTGGACCT GTGGGTGTGTGAGTGGCGAGGG CGTGTCACTT chr10:101830482-10183098 - 1 5.03e-07 GTGCGTGTGT GTGTGTGTGTGTGTGTGTGTGT chr2:241881406-241881906 + 1 5.03e-07 . gtgtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr19:35947352-35947852 + 46 5.03e-07 GGCACTGTTC gtgtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chrX:1452844-1453344 - 35 5.03e-07 GGGGCGTGAC ATGGGCGTGGCCTGGTGGAGAG GGCAATGGAG chr9:135967560-135968060 + 24 5.03e-07 GTGTGCAGGC gtgtgtgtgtgtgtgtgtgtgt gtgCGCGCGC chr17:74776156-74776656 - 59 5.03e-07 GGCGCCTCGC GGGGGCGGGACCGGGATTGGGG CCTGGCGGCT chr1:156661291-156661791 + 65 5.03e-07 GGCCCAGTCC gtgtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr6:6007356-6007856 - 12 5.03e-07 TTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGT GCTCGTGCGG chr19:1113239-1113739 - 46 5.03e-07 CTGGAGTGTG GTGGGCGGGGCATGGGCAGTGG GTGGGGCTTC chr13:113976072-11397657 - 3 5.03e-07 AATCTGTGTG GTGGGCGGGACCCGGTGGGAGG TG chr19:43463556-43464056 + 44 5.03e-07 GGGATTAGCT GTGGGCGTGGTCTCAGATGGGG CGTGGCCCAG chr20:18587663-18588163 + 47 6.10e-07 CAGGCCGAGA GTGGGCGTGGCCGACGTGGGGT GGGTAGCAGC chr19:17202158-17202658 - 1 6.10e-07 TGAGGCATGG GTGGGCGTGGCTAAGGATGGCG chr22:20298846-20299346 + 1 7.36e-07 . GTGGGCGGGGCCTGCTGTGGAC GCACAGAGGT chr19:36605321-36605821 + 28 7.36e-07 GGCGTGGTCC ATGGGCGTGACCTTGAGGGTGA CCCGGAGCGA chr12:1907490-1907990 + 49 8.86e-07 GGCGTGCCTG GTGGGCGTGTCTGGTGGGTGTG TCTGGTGGGC chr17:17206339-17206839 - 4 1.06e-06 GGGGCGTGAC GGGGGCGTGGCCTGGCGTGTGG CCA chr9:121650143-121650643 - 77 1.06e-06 GA GTGGGCGGGGCCGTCTGGGCAG AAATCCAGGC chr15:78000021-78000521 - 78 1.06e-06 A GTGGGCGTGGCTCTGGTGAGTG CCCGCCCTTC chr5:90529366-90529866 + 78 1.06e-06 ATCGCGTCAA GTGGGCGGAGGTGGGAAGGGGC G chr17:80980374-80980874 + 61 1.27e-06 gtgagtgagt gtgtgtgtgtgagtgtgtgtgt gaatgagtgg chr6:169840294-169840794 - 14 1.27e-06 TGAGCATGGT GTGGGTGTGGTATGGCATGGGT GGGCATAGTG chr17:35142016-35142516 - 20 1.27e-06 AGCAGTGCCG GTGGGTGTGCGTGGATGGGGGC GGGGGGCGTC chr15:78750939-78751439 + 2 1.27e-06 A GTGGGCGTGGCTCTGGCGAGTG CCCGCCCCTT chr12:121839412-12183991 + 71 1.51e-06 TCCAGAATCA GGGGGCGTGGCTGTGTGGCTGT GGCCTCCG chr4:8117219-8117719 - 5 1.51e-06 GGAGTCTGCA GTGGGTGGAGTCTGGTGAGTGG AGCC chr17:21235862-21236362 - 39 1.79e-06 GAATCAGTGG ATGGGTGTGGGTGGATGGATGG CTGAGTGGAT chr19:3573807-3574307 - 6 2.12e-06 AGGAGTGGAA GTGGGCGGGACCTTAGAGTGGG CAGAG chr17:16991216-16991716 - 42 2.12e-06 CGTGTGCGCA GGGGGTGTGTGTGTATGGGGTG TGCCTGTGGG chr19:49363430-49363930 + 50 2.50e-06 GTCTGACTGT GTGGGCGTGGCCAGGGAATGAA CTCACGGCTC chr19:49712302-49712802 + 44 2.50e-06 GGAGAGGGAC GTGGGTGTGGGTGGTGAGACGA GTGAGGGGCG chr8:141171860-141172360 + 53 2.94e-06 GTGCACGGTG GTGGGCGTGCACGGTGGTGGGC ATGCACAGTG chrX:153226325-153226825 + 45 2.94e-06 AGGAGAGTGA GGGGGTGTGGTCAGGAATGAGG CGAGAATGAG chr1:235504236-235504736 - 48 2.94e-06 GGGAGAAAAG GTGGGCGGAGCCGGTGGGAAGG CCAGGCGGAG chr21:39183249-39183749 - 35 2.94e-06 GCTGTGCGCG GAGGGCGTGGCCTGTGCGGGGC GGGACTTATT chr21:46264659-46265159 - 28 3.44e-06 TGGACTGAGT GTGGGTGTGTCCCCTGAAGGGC ATGTCCTGGG chr20:63941643-63942143 + 76 3.44e-06 GGCCACAGAA TTGGGTGTGGCAGGGGAAGGAA AGA chr4:4672967-4673467 - 47 4.02e-06 TCCTATAGGG ATGGGAGTGGTCAGGGAGGGGG TAGGCGTGGT chr10:132634115-13263461 + 21 4.02e-06 ATCTCCCTTG GTGGGTGTGCCCCGGAGAGGCG TATCATCTCC chr19:17539611-17540111 + 55 4.69e-06 TATGTAAAAT GGGGGCGTGGTCAGAGAGGGGC GGGGCCAAGC chr19:35843816-35844316 + 54 4.69e-06 GGTTCCTTGG GTGGGTGTGGTTTCCATGGTGG GCGGGGCTCA chr17:2975340-2975840 + 70 4.69e-06 accctccctg atgggcgtgtttgggagcagga actcacgtg chr19:45972042-45972542 - 67 5.45e-06 AGAAAAGGGT GTGGGTGTGACTCCAGAGAGGC TGTGGCTGGG chr10:11283933-11284433 + 61 5.45e-06 tgagtgcgtg gtgggtgggtgagggatgagtg tgtggtgggt chr6:41532202-41532702 + 62 5.45e-06 GGGTGTGCGA AGGGGTGTGACTGGAGGGGGTG TGTAGGGCTG chr12:132303742-13230424 - 71 6.32e-06 GTCCGGGC GAGGGTGTGCCCCGGAGAGGGT GTGCCCAGGT chr19:48321790-48322290 - 31 6.32e-06 TACAGAGCGA GTGGGTGTAACCAGAGGGGGCG TGGCCAGAAA chr7:44306790-44307290 + 30 6.32e-06 GCAGGAAGAA GAGGGTGTGAGCAGGGAGAGGA GGCGGTGAGC chr17:45161293-45161793 - 63 7.31e-06 TCCGGCTAAG GTGGGCGGGGCAGCAGGCGCGG AGGGATCCTT chr1:228438264-228438764 - 10 7.31e-06 ACCCTTCAGA GAGGGTGTGGCATCATCTGGGG AGGGAGTGG chr17:47971115-47971615 - 2 7.31e-06 CGGTGAGGAG GGGGGCGTGAGCGCGGAGAGAG G chr9:130299588-130300088 - 57 7.31e-06 GAATGGGTGG GTGGATGGGTGAGTGAATGGGT GGGTGGATGG chr19:53898884-53899384 + 27 8.43e-06 AGATTCTTCG GAGGGCGTGGTCGGGCGGATGA GCTCCTCGGG chr1:30651335-30651835 - 62 9.70e-06 CAGGGAGAAG GTGGGCGGGTAAGGAGGAGGTA GGAGGGAGTG chr21:45442671-45443171 + 31 9.70e-06 cggtgctgat gtgggtggtggtgctggtgtgg gcggtggtgg chr19:8592359-8592859 + 18 9.70e-06 CGCATAGACG GTGGGCGTGGCCAACGCGGGAA GGAGCAAGCA chr8:123396246-123396746 - 51 9.70e-06 CGGTGGTGGC GTGGGCGGGACAGACGGCGGAG GGATTCTGGG chr17:7234296-7234796 - 6 9.70e-06 ATGAGGAGAG GTGGGCGGGTACCTGGAGGAAG CTCGC chr5:139747091-139747591 + 26 9.70e-06 GGGCTGGCAG GTGGGCGGGGCTGCAGCAGAGC GGGGGTGAGA chr19:7871928-7872428 + 43 1.11e-05 GCTCGACGAG TGGGGCGTGGCCGGCAGGGTGG GCGGGGCCTG chr19:49676218-49676718 + 22 1.11e-05 acaaagagag gtgggcgttcctggcaggggga gggacttggc chr19:36604681-36605181 - 49 1.28e-05 GGCTGCGTCC GTGTGTGGTGGTGTGAGTGGGC GCGCCTGTGA chr9:137254961-137255461 + 7 1.28e-05 CCGGGC GCGGGCGGGACCGGGTGGGCGC ATGCGCGCTG chr10:100650919-10065141 - 14 1.46e-05 GGTGGAGGTG GTGGGAGTGGTGGAGGTGGTGG GAATGGTGGA chr19:1082390-1082890 + 53 1.46e-05 GAGTGGAGCT GCGGGCGTGGCCCGGGTAGGAG GGGCAGGGCT chr10:132752275-13275277 + 33 1.46e-05 TGCAGTGTGG AGGGGCGTGGCGTGGAGGAGGT GTGGCGTGGA chr5:176653307-176653807 - 51 1.46e-05 GTGTGCCTGC GAGTGTGTGACTAGGTGTGGTT GTGACTGTGG chr12:53727395-53727895 + 71 1.46e-05 GACAGAAAAC GAGGGTGTGGCCAGCAAAGGAC TTCAAGGC chr1:35031549-35032049 - 23 1.46e-05 CGCAGTGGTA GTGGGCGGGACGGCGGGGCGGA GGCCACACCA chr17:993480-993980 - 12 1.66e-05 TTATGTGAGG GTGGGTGGATTATGCGAGGTGG ATTATGCGAG chr20:62598569-62599069 + 16 1.66e-05 CTTCCAAGGG CTGGGCGTGGCTGTGTTGGGTT GGGCGTGGCT chr19:12840484-12840984 + 45 1.89e-05 GGAGACTCAG GTGGGCGGAGACTCAGGTGGGA CGGACAGAAA chr17:78140279-78140779 + 55 1.89e-05 AGGGTGCGTT GGGGGCGGGGCCCTTGGAGGTC GTGGTCTCGG chr6:692934-693434 + 39 1.89e-05 CGAGTCCTCG ATGGGCGGAGCCTTCaggggag ggtagaggag chr19:29420747-29421247 - 3 1.89e-05 GTGTGTGCGA GTGTATGTGTGAGTGTGGGTGG AG chr19:39970721-39971221 - 57 2.15e-05 CCGCAGGCGC GAGGGCGGGACGGGAGCTGTGG GCGTGCGCAG chr19:42325313-42325813 - 23 2.15e-05 AGCAGCCGCT GTGGGAGGGACGGCGAAGAGGA GGCGAGAAGT chr19:40335917-40336417 - 37 2.15e-05 AATGAATGAG CTGGGCGTGACCGTGGTGGGTG ACATCATCGC chr2:130727498-130727998 + 75 2.15e-05 CGGGGCTGTG GTGGGCGTGGCCCCGGGCTGCG GCGG chr15:72230289-72230789 + 52 2.43e-05 CCAGCAAGCA GGGGGAGGGGCGGCGAGAGGGA ACTGGGGCGC chr12:120725557-12072605 - 43 2.43e-05 CGGAGTGCTG GGGGGCGGGACCCGGGACAGAG GCCACGCCCG chr11:65215702-65216202 + 52 2.43e-05 gagcaagcga gtgggtggataagcgggtgagt gggcgagtga chr15:65868938-65869438 - 28 2.75e-05 GTTTGTGGAT GGGGGCGGGGTTCTCTGAGGAT TAGACAGCCG chr19:35903617-35904117 - 64 2.75e-05 CGCCCTCACC TTGGGCGGGGCTGCGGCGTGGG CGTGCGCACA chr20:33709993-33710493 - 56 2.75e-05 GAGTGGGGGA AAGGGCGTGGTTCTGGATAGAG GTGGGAGTGG chr4:3414791-3415291 + 14 2.75e-05 ggggcgtgtg aggggcgtgtgtgagaggggcg tgtgagaggg chr10:11283733-11284233 + 4 3.10e-05 gtg gtgggtggatgagggatgagtg tgtggtgggt chr1:1919271-1919771 - 48 3.10e-05 GCGGGGCCCA GTGGGCGGGGTTTATGCTGCGT GAGGCGTCCT chr17:16380868-16381368 + 72 3.10e-05 GTCCCTGTGG GTGGACGTGGTTGGTGATTGGC AGGATCC chr8:630756-631256 - 68 3.10e-05 AATGTGGGTG GTGGGTGGTCACGGGAGGGTGT GAGTCAGCTC chr17:63621447-63621947 + 52 3.10e-05 GGACCAGTCG GGGGATGGGGCCGCAGAGGTGG CCGCGCGCCG chr9:133238378-133238878 + 3 3.49e-05 AG AAgggcggggcagaggagtggg atgagcgtgg chr19:43475151-43475651 + 45 3.49e-05 TTCCCCCCAA GAGGGCGGGGCCACTCAGGGGG CGTGGTTTTC chr22:45309531-45310031 + 26 3.49e-05 GGCCTCCCCG GTGGGCGGGACCGTGGTCACCG AGGTGGGCGG chr19:5308832-5309332 + 20 3.49e-05 TGGGCTCAGA GTGTGTGGAGGTGGGAGGTGAG TGCCAAGTGG chr15:74396891-74397391 + 16 3.49e-05 AATACCTGAT GTGGGCGTGACTCACCTTGGGG ACCTGTGAGT chr1:151189988-151190488 - 72 3.49e-05 GGGTTTA GAGGGTGGGACTGGGAGTCTCT CGACACTCTG chr10:132163298-13216379 - 40 3.49e-05 GTAGCCATCA GAGTGTGTGTTATGAGGGGTGT GGCCACTGGA chr20:1466689-1467189 - 52 3.93e-05 AGGCACCGCG TGGGGCGGGGCTGCGGGCGGGC TCCCAGCTGC chr21:36385141-36385641 + 29 3.93e-05 CCGCCCATgc gggggcggggcctgcggcgcgc gggaagcggc chr10:100807247-10080774 - 72 3.93e-05 GGAGCAG GTGGGCGGTGGTGTGTGAGCAC AGTACCGTGG chr1:40257873-40258373 + 69 4.41e-05 AGGGAGGGAT GGGGGCGGGTATCGGCGTAGGG GCCCTCGGAA chrX:15737878-15738378 + 72 4.41e-05 CACAGTTTGG TTGGGCGTGACCGGGGCAATAA GTACGGA chr15:76905006-76905506 - 73 4.41e-05 GGTCGG GGGTGAGTGTCCGCGAGGGGCG TGCGTAGCGC chr19:6516016-6516516 + 53 4.41e-05 TAACTATGAA GTGGGCGGAGTCTAGGGAGAAT GACCGTGGGG chr12:6937943-6938443 + 9 4.41e-05 tacgctgc gGGGCTGTGGCTGGGTGGGCGG GCGAGTCACG chr6:13873597-13874097 + 1 4.41e-05 . GAGGGAGGGGGCGGAGGTGGCC TCACTGCCTG chr11:69376959-69377459 - 72 4.94e-05 TTCCTGG GTGGGCGTATGTGTTCACGGGT GGGTGTGTGC chr19:39402377-39402877 - 33 4.94e-05 CTGGGCCTGA GCGGGCGTGGCCAAGGGCGGCG CTGGCCGTGT chr19:36014215-36014715 + 67 4.94e-05 GTGGACCCCG ATGGGTGGGACGGGGGCGGCAG CCGTGACAGC chr7:75914809-75915309 - 62 4.94e-05 CGCCGGCCGC GGGGGTGGGGGCGTGGCCATTG GGCCGCCGCC chr16:89011703-89012203 - 11 4.94e-05 GAGTGCATGG GTGGGTGGATGGATAGATGGGT GGATGAGTGC chr1:228109115-228109615 + 71 5.52e-05 TACGCCCCTG TTGGGCGGGGCCGGCGCGGCGT GATGTAAT chr19:38402923-38403423 + 54 5.52e-05 AGGCGGAAGC GTGGGAGGGGGCCGCGGTGGCC CAGGACCTGC chr19:36054026-36054526 - 55 5.52e-05 GGCGGCGAGC GCGGGTGGGGCGGGGTTAGGCG GCGCTCCGCG chr19:38636832-38637332 - 24 5.52e-05 AACCCCGCCA TGGGGTGTGGTGTGGTGGGGGC TGGGGGTACG chr19:7522296-7522796 + 66 5.52e-05 TCGTGGCGCA GGGGGCGGGACCAGAGGCGGTC ACGTGAGGGG chr19:35958963-35959463 + 9 6.16e-05 ACGACGGT GTGGGTGTGCCCGCCCGGGGCA GAGGAGCTGC chr19:40465842-40466342 - 35 6.16e-05 CTCCGGGAGA GGGGGCGTGAGCTACGAGAGGC CGTGGGTGAG chr6:43771243-43771743 + 45 6.16e-05 CGCGCGCTAG GTGGGAGGGTACCCGGAGAGAG GCTCACCGCC chr7:150405126-150405626 + 66 6.16e-05 CCGGACCCTC GGGGGCGGGTCACTGCGGGCGT GCTACCGTAT chr19:34404313-34404813 + 28 6.16e-05 GCATTCCGGT GAGGGCGGGTGCCGGAGCTGGG GTCGATGGGT chr19:41310147-41310647 + 35 6.87e-05 CGCGCAGGCG GCGGGTGGGTGCGGTTGCGGTG TCTCTAGGAA chr5:138338141-138338641 - 8 6.87e-05 AAGAGGGAAG GAGGGAGGGACGGTTGAGGTGC CCGCCCC chr19:4081557-4082057 - 6 6.87e-05 AAGAGGAGAA GGGGGAGTAGGAGGGAGGAAGG AGGAG chr19:35899516-35900016 + 39 6.87e-05 GGGGATTGCG CGGGGCGGGGGCGGGAGGAGGT GGCTCGGAAA chr18:74495901-74496401 + 45 6.87e-05 GCCGGGATTG GTGGGCGGGACGGAAATGGAGC TGGGAGAGGT chr1:155050363-155050863 - 42 7.64e-05 ATATCCGCCA GCGGGTGGCGCTGTTGGGAGGT GGGCGTTAGC chr15:101295102-10129560 + 76 7.64e-05 CGCGCGCACA GGGGATGTGTCTCGTTCTGGGT TGT chr5:5340267-5340767 + 33 7.64e-05 TGGCTCCCTC GTGTGTGTGGAATTCTCTGTGC ATTTGTTTCC chr21:6565242-6565742 - 2 8.49e-05 GGAGTGTGTG GTGTGTGTGGTGTGTGTGGAGT G chr17:7484043-7484543 + 69 8.49e-05 CGGGAAAGGA AGGGGCGGGGACGCGAGGGCGA ATCTATAAGA chr22:20117111-20117611 + 14 8.49e-05 GGAAGTGCGC GCGGGTGTCGCCGGGAGTGCGC GCTCCTCTGG chr1:36088630-36089130 + 37 9.42e-05 GGGAAACTGT GAGGgcggcaccggaagtggcg agcagtctgc chr19:48614800-48615300 - 66 9.42e-05 TGCTGGGATG GCGGGTGGGGCGTGGACCGGGA AGTGCAGGGT chr21:31873932-31874432 + 6 9.42e-05 GCCCG GGGGTTGGGGGCTTGGGAGGGG ACGGCCTTGC chr19:38975209-38975709 + 10 9.42e-05 CCTCAGGCC GAGGGAGGGCCCGGGAAAGCGA CGCTGCGGGT chr16:89008655-89009155 - 7 1.04e-04 CAAAGATGAG GTGGGTGTGTCAGGGTCCTCCT GCAAAG chr12:132161226-13216172 - 3 1.04e-04 AGGAGGAGCT GAGGGAGGAGGAGGTGAGGGAG GA chr10:97687194-97687694 - 33 1.04e-04 GGCGCCGCGC GGGGGCGGAGAGGGCGGTGGGC AGGGCCCGGG chr17:7717065-7717565 - 43 1.04e-04 CCAGGCAGCC GTGGGTGCAGCTGGATCCGGGG GAAAAACCGG chr9:127771228-127771728 - 73 1.04e-04 AGGCGG AGGGGTGTGCTAGGGGGCGAGG CCTTCCCGAC chr19:40750896-40751396 - 37 1.04e-04 ACGCGACCCG GTGGGCGGAGCACCCTAAATGG CGATTCCCAT chr12:53675833-53676333 + 46 1.04e-04 GAAGACAGAG AGGGGCGGAGCAGCGGGAAGAG CGAAAGGAAG chr16:89007882-89008382 - 64 1.04e-04 CAAAGATGAG GTGGGTGTGTCAGGGTCCTCCT GCAAAGACGA chr6:30907743-30908243 + 33 1.15e-04 CGTTAGCAGC GTGGGCGGAGTTGGTTCTGCCT TCGCGGAACC chr16:3400903-3401403 + 73 1.15e-04 TCAGCAGCTA GTGGGCGTCTCCGCAGCGAGTG GCATCG chr8:11016268-11016768 - 43 1.15e-04 GGCAGGGATG GTGGGAGGGAAGGCGTGGGCGA AGGCGCTACC chr11:120335855-12033635 + 22 1.15e-04 GCCGCGGGAG GTGGGTGGGCCTCCCGGGGCTG CACGGGTCCC chr12:121686840-12168734 - 39 1.15e-04 GCATGTGTAA AGGGGCGGGTCTGGTTAATTGC GCGGGAGATT chr19:38335537-38336037 + 15 1.27e-04 CGCGTGAGAG GAGGGCGTGCCTCTGCAAAGGC GGAAGTCGGC chr1:30191256-30191756 - 48 1.27e-04 TGCTGCTCTG ATGGGCGTGGTCACTGCTATAG TGGGAGGGGC chr9:129642023-129642523 + 68 1.40e-04 GCGATGTCCA GTGGGCGGCCCCAGCGGAGTGG GAGAGTGGAG chr6:13614994-13615494 - 13 1.40e-04 CGAAGGGAGG AAGGGCGTGGCCTGTAGGCAGT GGGCGTGTTT chr10:132453012-13245351 + 6 1.40e-04 TTCCC AGgggcggggtcgcggggcagg gcgggcgctg chr8:37736341-37736841 + 3 1.55e-04 gc gggggTGTGGTCTTCTCGCGTG AATTGATGGC chr1:224615790-224616290 - 62 1.55e-04 CGAGCGGAGG TGGGGCGGGACCGGTTGGAGCA GGGACTCTTT chr10:132671153-13267165 - 15 1.55e-04 CCAGAGCAGG GAGGGCGGAGTCCGAAGCAGGG AGGGCGGAGT chr1:154558610-154559110 - 27 1.70e-04 GCGAGAACAG GGGGGCGGGAAAGACGGAGAGA TCACGTGGAG chr19:43798580-43799080 + 69 1.70e-04 GAGTCATGAG GTGGGCGTTGCATTTGTCAGTT GTGCAGCCGC chr19:40806807-40807307 + 17 1.70e-04 AGCCCGAGGG GTGGGAGGGAGTGATGCAGGCA GACGCTGCGC chr14:90383254-90383754 - 36 1.87e-04 TGGAGCGCTC GCGGGCGGGGCGAGGCAAGGGC GAGGGCACTA chr15:82540349-82540849 - 66 2.05e-04 GGGGAGCGGA AAGGGAGGAGCCGTCGGGGGCG GGACAGACAC chr19:38224000-38224500 + 37 2.05e-04 TTCATTCCCG GGGGGCGGGAGCACGAGGGCCA CGGCCAATCG chr19:40662760-40663260 + 57 2.05e-04 CGCCTGGAGG GTGGACGGGGTAGGTTACGGCC AGGCAGCCCG chr22:19959150-19959650 + 58 2.05e-04 CCGTGGCTGG GTGGGCGTGGTCCCAAAGTCAA TTGGATGTGG chr19:29873380-29873880 - 41 2.05e-04 GCGGCCGGGA GGGCGCGGGGCCGGGTCGGAGC GGGGTCAGGG chr5:134371107-134371607 - 51 2.24e-04 TGGGGGAGGA GGGGGCGGGACGCGGGAGCGCG CCTTCCCCGA chr19:42302144-42302644 - 75 2.24e-04 CTCC GCGGGTGTGCTAGCGTTGGGAC GGTCCTTTGT chr10:87862153-87862653 - 6 2.24e-04 AGCCCAGCGA GTGGGCGGGGCGAGGAGACCTA GGAGG chr9:85743215-85743715 - 56 2.24e-04 CACATTCCCA GGGGGTGGGGGAGTAGCTCTAA GTTCTTAATT chr15:68229230-68229730 - 50 2.24e-04 TGCAGGCCAG GTGGGCGCGCGCCGGGGTGAGA GGGCGGGCTA chr19:40798641-40799141 - 76 2.24e-04 GGA GGGGGCGTTTCTTGCATGTTGG AATCAAGTGG chr12:122980338-12298083 + 43 2.45e-04 TCTGCGGGAG GTGGGCGCGCCCGGGACGGAAC CTGGGGCGTC chr16:30923078-30923578 - 42 2.45e-04 CAGGACGGCG GAGGGCGTGCCCAGCCGGGAGC CGAGGATGCC chr17:63600628-63601128 + 7 2.45e-04 GGCAGT GGGGACGTGTTTTTGGAGCGAA CCCGGTAAAG chr22:35257414-35257914 - 3 2.45e-04 GCCCAGGGCG GCGGGTGGCGACGGGGCGGGGC TG chr19:35154710-35155210 - 48 2.45e-04 ACTGAGGCAG GCGGGCGGGAGCGAGGCAGAGC GGCCCACTGT chr21:34073388-34073888 - 38 2.45e-04 CGGGACGCGA AGGGGCGGGACGGCGGGGACAG TGGGGACCTA chr19:2945126-2945626 + 58 2.92e-04 AGTCCTGCGT GGGGGCGGGACCCGCGTGCGTG ACGTCACCGT chr16:86563761-86564261 - 63 2.92e-04 GGCGGACTCC GTGGGTGTTGGCGTCATCTTGA GGCCAACCAG chr19:36114650-36115150 + 69 2.92e-04 GCTACAGGTC GCGGGAGGGGCCAGGCCTAGGT GCTTCGCCAA chr19:38506883-38507383 + 60 3.18e-04 GGAGTTCGAA ATGGGCGGGGCTTAAGCACAGG CGGGACCAGA chr5:1950732-1951232 + 57 3.18e-04 TGTGTCATCT GTGCGTGTGTCATCTGCTGTGC GTGAGTCATC chr19:15432578-15433078 - 9 3.18e-04 GCGCGCCCTG AGGGGCGGGGCGGAGCGGGTTT GGCGGCGG chr19:45406315-45406815 - 57 3.46e-04 AGCGCCCAAC TGGTGCGGGAGCGCGGGGGTAG GCATTGCTCG chr19:37594258-37594758 - 53 3.46e-04 TGGCAGTGGC GGGGGTGTGGTGCTGCTAGTTG TGTTCCTCCG chr19:40420981-40421481 - 61 3.46e-04 GCACGGAGGG GAGGGAGTGTCACCGTGAAAAC TGCGGGTGCG chr16:21599269-21599769 + 75 3.77e-04 CGGAAGGGAA GGGGGAGGTGCCGAGGCTGCGC GCCG chr12:57752246-57752746 + 26 3.77e-04 AGGGCGAAGA GTGTAAGGGGGCGGAGGGGCGA TGGCAGCCAC chr19:45078984-45079484 + 52 3.77e-04 CCTCTGCAGC GGGGGCGCCGGCGGAAGTGGGG ACACCAGTAG chr19:55599857-55600357 + 25 3.77e-04 GCGTTTCGAG GTGGTTGGGGATGTGGTGCTGG GTTATTTCCC chr11:18322017-18322517 - 32 3.77e-04 ACGCGGAAGG AGGGGCGTGACTCGTCACGTGA TGAGGAAGTG chr22:39520180-39520680 - 15 3.77e-04 CGTTTATGCC CAGGGCGTAGCTGTGACGAGAA AAGGAGTTTG chr19:55643335-55643835 + 22 4.09e-04 TTTCCTCTCG GTGTGTGTTTCTGGCCGGAGCC GTTTCGCGAC chr5:176388746-176389246 + 32 4.09e-04 CCATAGGTAA GTGGGTGCGGTAGGAACTGCAC AAGGAGAGGA chr9:137422975-137423475 + 42 4.09e-04 CAAGGCCAGC GCGGGCGGGGCGAGGAAGCCGG GCGCACAAAG chr20:35742146-35742646 - 62 4.09e-04 TCACTGAATG GGGGATGGGAATATCTGTGGCG CAATCATTGC chr16:22296989-22297489 + 2 4.09e-04 c gggggcgtgggttcgaatccca ccgctgccaG chr17:74514093-74514593 + 28 4.09e-04 gatgtcatgt gggggtggtcatgtgataggtg atgtcatgtg chr19:5803915-5804415 + 47 4.09e-04 AGCGCTGTGG GAGCGCGGAGCCGTCGGGGAGG AGCCCGGGTG chr19:1652608-1653108 - 53 4.44e-04 CGCACAGCTC GTGTGTGCTTCCGCGGACGGGG ATAGTCCGTG chr1:234373431-234373931 + 32 4.44e-04 GAAGCCGGAC GTGGGCGGGCAGAGAGGTCGGC TTGCTGATGG chr11:57741108-57741608 + 41 4.44e-04 ACCCGAAGCG ATGGGTGGTTCCGTCAGGCGCT TCCCGCACCT chr9:128787006-128787506 + 68 4.44e-04 CGCGTCCCTG gggggcggcggcggcggcggca gcgcaggcgg chr9:128771737-128772237 + 62 4.44e-04 CGCGGCTAAC GCGGGCGGCGGCGGCAGAAGGT TCCGGGGACC chr17:7704792-7705292 + 53 4.81e-04 AGGCGGGGCG GCGGGCGGGAGGTGCGCGAGGT GAGGGAGGTG chr19:12669253-12669753 + 15 4.81e-04 CGTGCAAGCT GAGGGCGGATTTTAGAGTAACA CCCGAGGCCC chr14:106348938-10634943 - 66 5.20e-04 GGGAGGCGGA GGGGGCGGGCGCAGGTGCTGCT CAGGACCAGC chr19:33080835-33081335 - 45 5.20e-04 GTGATGCTGG AAGGCTGGGTCCGCGGGCGGGG GAAGGTGTCC chr19:55216286-55216786 + 60 5.20e-04 TCCTCACGCT GTGGCTGTGTCCTGTGTTGCCG TGTTTCCGCT chr19:40529037-40529537 - 66 5.20e-04 GTTTCCCGGA GTCGGCGTGGGCGGGCAGGGAC TTGCGGAGCA chr19:47778246-47778746 + 26 5.20e-04 CCGGGGGGAC CTGGGAGGGGACGCGCGGAGGG CTTCCCCCGG chr2:197499767-197500267 - 4 5.63e-04 GCGGGTAGGG AGGGGCGGGGCTCGCGCGCAGG GTG chr5:116574625-116575125 - 64 5.63e-04 GCCAGCCAAA GTAGGCGGAGTTGCGGAAGGAG AGTCCGATCT chr14:22982495-22982995 + 14 5.63e-04 GGGATAGCTG GTGTGCGTGCAGCGGAAGGCGC TAACTGCCCT chr21:45814170-45814670 + 7 5.63e-04 agtggt gggtgagtggtgagtgatgagt ggtaagtggt chr10:93702412-93702912 - 2 6.08e-04 GGCGCACTCG GGGGACGGTGCCATTTAGATGT A chr10:17201423-17201923 - 70 6.56e-04 CCAGAGGCT GAGGGAGCGGCGCGATGGAGGG AGGAGGAGCG chr19:10416591-10417091 + 16 6.56e-04 GGCAAGTGGC GGGGGCGGGTTCTAGGCCCGAC CGGCAGGGGG chr20:324254-324754 - 60 6.56e-04 GGCCGGCACG AGGCGCGTGGCGGGGAGGGGCC GCGCGCTCCC chr19:40403923-40404423 - 35 6.56e-04 AGACGCCGGA GTGGGTGTGCCCCGACGTCCTG CGAGGGCAGC chr19:17337119-17337619 - 78 7.07e-04 A GCGGGAGGCGGTATGGAGGTAG GTGTAGCGAA chr15:69452750-69453250 + 73 7.07e-04 CAGTCACGGT GAGTGCGGGCGCGGGCCGGCGG CCGGGC chr16:3157445-3157945 + 75 7.07e-04 GCCGACCCTC GTGGGCGTGTGTCCCGTCTGCC GTCC chr19:40603759-40604259 - 30 7.61e-04 CCAGTAGCAC CGGGGCGGAGCCACGAGCGGGA ACGCGCCTCC chr10:5889875-5890375 - 26 8.19e-04 CGAGACCGGA GGGGGCGTGCTGACGGACGGCC ACTAACGCCA chr12:49060553-49061053 - 75 8.80e-04 CAGC GTGTGCGTAGAACTGCAGAGTC ACAGCCTTTC chr5:96934985-96935485 - 26 9.45e-04 GGCCCGGGTC GCGGGCGCCGCAGGATGTGGGC AGAAGGCCCG chr17:18780985-18781485 - 40 1.09e-03 CAGCGCAGCA GCGTACGGGTCCGGGTCGGAAC TGAGGCGACC chr1:25247105-25247605 - 5 1.25e-03 TCTCAGTCGT GAGGGAGGCGTCGACGGCGTGC GGTA chr2:74454736-74455236 - 37 1.52e-03 GCAACCATCC TTGTGCGGGGCACGCTTCGCGT CCAAAATCGT chr12:113185356-11318585 - 19 2.08e-03 ACTCACTCAG GTGCGTGTGTACTAGGCCGCCG AGGGCCGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:88882218-88882718 8.8e-09 30_[+1]_48 chr19:17209605-17210105 1.2e-08 15_[+1]_63 chr8:142008278-142008778 1.6e-08 15_[-1]_63 chr6:169840095-169840595 2.7e-08 45_[-1]_33 chr19:35557948-35558448 2.7e-08 17_[+1]_61 chr5:180594705-180595205 3.5e-08 48_[+1]_30 chr19:33412865-33413365 3.5e-08 53_[-1]_25 chr1:111989955-111990455 4.5e-08 55_[+1]_23 chr10:7378546-7379046 4.5e-08 59_[+1]_19 chr12:132305298-13230579 7.3e-08 66_[-1]_12 chr19:6161239-6161739 9.2e-08 28_[+1]_50 chr19:1690727-1691227 9.2e-08 57_[-1]_21 chr19:40598041-40598541 9.2e-08 71_[-1]_7 chr21:44810770-44811270 1.2e-07 67_[-1]_11 chr10:72215765-72216265 1.2e-07 6_[-1]_72 chr1:245464285-245464785 1.2e-07 59_[+1]_19 chr19:6677824-6678324 1.4e-07 66_[+1]_12 chr19:8922528-8923028 1.8e-07 74_[+1]_4 chr1:31387508-31388008 1.8e-07 20_[-1]_58 chr19:40570505-40571005 2.2e-07 31_[+1]_47 chr16:1342857-1343357 2.8e-07 53_[+1]_25 chr19:17762620-17763120 4.1e-07 51_[-1]_27 chr16:84735819-84736319 4.1e-07 24_[+1]_54 chr10:101830482-10183098 5e-07 [-1]_78 chr2:241881406-241881906 5e-07 [+1]_78 chr19:35947352-35947852 5e-07 45_[+1]_33 chrX:1452844-1453344 5e-07 34_[-1]_44 chr9:135967560-135968060 5e-07 23_[+1]_55 chr17:74776156-74776656 5e-07 58_[-1]_20 chr1:156661291-156661791 5e-07 64_[+1]_14 chr6:6007356-6007856 5e-07 11_[-1]_67 chr19:1113239-1113739 5e-07 45_[-1]_33 chr13:113976072-11397657 5e-07 2_[-1]_76 chr19:43463556-43464056 5e-07 43_[+1]_35 chr20:18587663-18588163 6.1e-07 46_[+1]_32 chr19:17202158-17202658 6.1e-07 [-1]_78 chr22:20298846-20299346 7.4e-07 [+1]_78 chr19:36605321-36605821 7.4e-07 27_[+1]_51 chr12:1907490-1907990 8.9e-07 48_[+1]_30 chr17:17206339-17206839 1.1e-06 3_[-1]_75 chr9:121650143-121650643 1.1e-06 76_[-1]_2 chr15:78000021-78000521 1.1e-06 77_[-1]_1 chr5:90529366-90529866 1.1e-06 77_[+1]_1 chr17:80980374-80980874 1.3e-06 60_[+1]_18 chr6:169840294-169840794 1.3e-06 13_[-1]_65 chr17:35142016-35142516 1.3e-06 19_[-1]_59 chr15:78750939-78751439 1.3e-06 1_[+1]_77 chr12:121839412-12183991 1.5e-06 70_[+1]_8 chr4:8117219-8117719 1.5e-06 4_[-1]_74 chr17:21235862-21236362 1.8e-06 38_[-1]_40 chr19:3573807-3574307 2.1e-06 5_[-1]_73 chr17:16991216-16991716 2.1e-06 41_[-1]_37 chr19:49363430-49363930 2.5e-06 49_[+1]_29 chr19:49712302-49712802 2.5e-06 43_[+1]_35 chr8:141171860-141172360 2.9e-06 52_[+1]_26 chrX:153226325-153226825 2.9e-06 44_[+1]_34 chr1:235504236-235504736 2.9e-06 47_[-1]_31 chr21:39183249-39183749 2.9e-06 34_[-1]_44 chr21:46264659-46265159 3.4e-06 27_[-1]_51 chr20:63941643-63942143 3.4e-06 75_[+1]_3 chr4:4672967-4673467 4e-06 46_[-1]_32 chr10:132634115-13263461 4e-06 20_[+1]_58 chr19:17539611-17540111 4.7e-06 54_[+1]_24 chr19:35843816-35844316 4.7e-06 53_[+1]_25 chr17:2975340-2975840 4.7e-06 69_[+1]_9 chr19:45972042-45972542 5.5e-06 66_[-1]_12 chr10:11283933-11284433 5.5e-06 60_[+1]_18 chr6:41532202-41532702 5.5e-06 61_[+1]_17 chr12:132303742-13230424 6.3e-06 70_[-1]_8 chr19:48321790-48322290 6.3e-06 30_[-1]_48 chr7:44306790-44307290 6.3e-06 29_[+1]_49 chr17:45161293-45161793 7.3e-06 62_[-1]_16 chr1:228438264-228438764 7.3e-06 9_[-1]_69 chr17:47971115-47971615 7.3e-06 1_[-1]_77 chr9:130299588-130300088 7.3e-06 56_[-1]_22 chr19:53898884-53899384 8.4e-06 26_[+1]_52 chr1:30651335-30651835 9.7e-06 61_[-1]_17 chr21:45442671-45443171 9.7e-06 30_[+1]_48 chr19:8592359-8592859 9.7e-06 17_[+1]_61 chr8:123396246-123396746 9.7e-06 50_[-1]_28 chr17:7234296-7234796 9.7e-06 5_[-1]_73 chr5:139747091-139747591 9.7e-06 25_[+1]_53 chr19:7871928-7872428 1.1e-05 42_[+1]_36 chr19:49676218-49676718 1.1e-05 21_[+1]_57 chr19:36604681-36605181 1.3e-05 48_[-1]_30 chr9:137254961-137255461 1.3e-05 6_[+1]_72 chr10:100650919-10065141 1.5e-05 13_[-1]_65 chr19:1082390-1082890 1.5e-05 52_[+1]_26 chr10:132752275-13275277 1.5e-05 32_[+1]_46 chr5:176653307-176653807 1.5e-05 50_[-1]_28 chr12:53727395-53727895 1.5e-05 70_[+1]_8 chr1:35031549-35032049 1.5e-05 22_[-1]_56 chr17:993480-993980 1.7e-05 11_[-1]_67 chr20:62598569-62599069 1.7e-05 15_[+1]_63 chr19:12840484-12840984 1.9e-05 44_[+1]_34 chr17:78140279-78140779 1.9e-05 54_[+1]_24 chr6:692934-693434 1.9e-05 38_[+1]_40 chr19:29420747-29421247 1.9e-05 2_[-1]_76 chr19:39970721-39971221 2.1e-05 56_[-1]_22 chr19:42325313-42325813 2.1e-05 22_[-1]_56 chr19:40335917-40336417 2.1e-05 36_[-1]_42 chr2:130727498-130727998 2.1e-05 74_[+1]_4 chr15:72230289-72230789 2.4e-05 51_[+1]_27 chr12:120725557-12072605 2.4e-05 42_[-1]_36 chr11:65215702-65216202 2.4e-05 51_[+1]_27 chr15:65868938-65869438 2.7e-05 27_[-1]_51 chr19:35903617-35904117 2.7e-05 63_[-1]_15 chr20:33709993-33710493 2.7e-05 55_[-1]_23 chr4:3414791-3415291 2.7e-05 13_[+1]_65 chr10:11283733-11284233 3.1e-05 3_[+1]_75 chr1:1919271-1919771 3.1e-05 47_[-1]_31 chr17:16380868-16381368 3.1e-05 71_[+1]_7 chr8:630756-631256 3.1e-05 67_[-1]_11 chr17:63621447-63621947 3.1e-05 51_[+1]_27 chr9:133238378-133238878 3.5e-05 2_[+1]_76 chr19:43475151-43475651 3.5e-05 44_[+1]_34 chr22:45309531-45310031 3.5e-05 25_[+1]_53 chr19:5308832-5309332 3.5e-05 19_[+1]_59 chr15:74396891-74397391 3.5e-05 15_[+1]_63 chr1:151189988-151190488 3.5e-05 71_[-1]_7 chr10:132163298-13216379 3.5e-05 39_[-1]_39 chr20:1466689-1467189 3.9e-05 51_[-1]_27 chr21:36385141-36385641 3.9e-05 28_[+1]_50 chr10:100807247-10080774 3.9e-05 71_[-1]_7 chr1:40257873-40258373 4.4e-05 68_[+1]_10 chrX:15737878-15738378 4.4e-05 71_[+1]_7 chr15:76905006-76905506 4.4e-05 72_[-1]_6 chr19:6516016-6516516 4.4e-05 52_[+1]_26 chr12:6937943-6938443 4.4e-05 8_[+1]_70 chr6:13873597-13874097 4.4e-05 [+1]_78 chr11:69376959-69377459 4.9e-05 71_[-1]_7 chr19:39402377-39402877 4.9e-05 32_[-1]_46 chr19:36014215-36014715 4.9e-05 66_[+1]_12 chr7:75914809-75915309 4.9e-05 61_[-1]_17 chr16:89011703-89012203 4.9e-05 10_[-1]_68 chr1:228109115-228109615 5.5e-05 70_[+1]_8 chr19:38402923-38403423 5.5e-05 53_[+1]_25 chr19:36054026-36054526 5.5e-05 54_[-1]_24 chr19:38636832-38637332 5.5e-05 23_[-1]_55 chr19:7522296-7522796 5.5e-05 65_[+1]_13 chr19:35958963-35959463 6.2e-05 8_[+1]_70 chr19:40465842-40466342 6.2e-05 34_[-1]_44 chr6:43771243-43771743 6.2e-05 44_[+1]_34 chr7:150405126-150405626 6.2e-05 65_[+1]_13 chr19:34404313-34404813 6.2e-05 27_[+1]_51 chr19:41310147-41310647 6.9e-05 34_[+1]_44 chr5:138338141-138338641 6.9e-05 7_[-1]_71 chr19:4081557-4082057 6.9e-05 5_[-1]_73 chr19:35899516-35900016 6.9e-05 38_[+1]_40 chr18:74495901-74496401 6.9e-05 44_[+1]_34 chr1:155050363-155050863 7.6e-05 41_[-1]_37 chr15:101295102-10129560 7.6e-05 75_[+1]_3 chr5:5340267-5340767 7.6e-05 32_[+1]_46 chr21:6565242-6565742 8.5e-05 1_[-1]_77 chr17:7484043-7484543 8.5e-05 68_[+1]_10 chr22:20117111-20117611 8.5e-05 13_[+1]_65 chr1:36088630-36089130 9.4e-05 36_[+1]_42 chr19:48614800-48615300 9.4e-05 65_[-1]_13 chr21:31873932-31874432 9.4e-05 5_[+1]_73 chr19:38975209-38975709 9.4e-05 9_[+1]_69 chr16:89008655-89009155 0.0001 6_[-1]_72 chr12:132161226-13216172 0.0001 2_[-1]_76 chr10:97687194-97687694 0.0001 32_[-1]_46 chr17:7717065-7717565 0.0001 42_[-1]_36 chr9:127771228-127771728 0.0001 72_[-1]_6 chr19:40750896-40751396 0.0001 36_[-1]_42 chr12:53675833-53676333 0.0001 45_[+1]_33 chr16:89007882-89008382 0.0001 63_[-1]_15 chr6:30907743-30908243 0.00012 32_[+1]_46 chr16:3400903-3401403 0.00012 72_[+1]_6 chr8:11016268-11016768 0.00012 42_[-1]_36 chr11:120335855-12033635 0.00012 21_[+1]_57 chr12:121686840-12168734 0.00012 38_[-1]_40 chr19:38335537-38336037 0.00013 14_[+1]_64 chr1:30191256-30191756 0.00013 47_[-1]_31 chr9:129642023-129642523 0.00014 67_[+1]_11 chr6:13614994-13615494 0.00014 12_[-1]_66 chr10:132453012-13245351 0.00014 5_[+1]_73 chr8:37736341-37736841 0.00015 2_[+1]_76 chr1:224615790-224616290 0.00015 61_[-1]_17 chr10:132671153-13267165 0.00015 14_[-1]_64 chr1:154558610-154559110 0.00017 26_[-1]_52 chr19:43798580-43799080 0.00017 68_[+1]_10 chr19:40806807-40807307 0.00017 16_[+1]_62 chr14:90383254-90383754 0.00019 35_[-1]_43 chr15:82540349-82540849 0.0002 65_[-1]_13 chr19:38224000-38224500 0.0002 36_[+1]_42 chr19:40662760-40663260 0.0002 56_[+1]_22 chr22:19959150-19959650 0.0002 57_[+1]_21 chr19:29873380-29873880 0.0002 40_[-1]_38 chr5:134371107-134371607 0.00022 50_[-1]_28 chr19:42302144-42302644 0.00022 74_[-1]_4 chr10:87862153-87862653 0.00022 5_[-1]_73 chr9:85743215-85743715 0.00022 55_[-1]_23 chr15:68229230-68229730 0.00022 49_[-1]_29 chr19:40798641-40799141 0.00022 75_[-1]_3 chr12:122980338-12298083 0.00025 42_[+1]_36 chr16:30923078-30923578 0.00025 41_[-1]_37 chr17:63600628-63601128 0.00025 6_[+1]_72 chr22:35257414-35257914 0.00025 2_[-1]_76 chr19:35154710-35155210 0.00025 47_[-1]_31 chr21:34073388-34073888 0.00025 37_[-1]_41 chr19:2945126-2945626 0.00029 57_[+1]_21 chr16:86563761-86564261 0.00029 62_[-1]_16 chr19:36114650-36115150 0.00029 68_[+1]_10 chr19:38506883-38507383 0.00032 59_[+1]_19 chr5:1950732-1951232 0.00032 56_[+1]_22 chr19:15432578-15433078 0.00032 8_[-1]_70 chr19:45406315-45406815 0.00035 56_[-1]_22 chr19:37594258-37594758 0.00035 52_[-1]_26 chr19:40420981-40421481 0.00035 60_[-1]_18 chr16:21599269-21599769 0.00038 74_[+1]_4 chr12:57752246-57752746 0.00038 25_[+1]_53 chr19:45078984-45079484 0.00038 51_[+1]_27 chr19:55599857-55600357 0.00038 24_[+1]_54 chr11:18322017-18322517 0.00038 31_[-1]_47 chr22:39520180-39520680 0.00038 14_[-1]_64 chr19:55643335-55643835 0.00041 21_[+1]_57 chr5:176388746-176389246 0.00041 31_[+1]_47 chr9:137422975-137423475 0.00041 41_[+1]_37 chr20:35742146-35742646 0.00041 61_[-1]_17 chr16:22296989-22297489 0.00041 1_[+1]_77 chr17:74514093-74514593 0.00041 27_[+1]_51 chr19:5803915-5804415 0.00041 46_[+1]_32 chr19:1652608-1653108 0.00044 52_[-1]_26 chr1:234373431-234373931 0.00044 31_[+1]_47 chr11:57741108-57741608 0.00044 40_[+1]_38 chr9:128787006-128787506 0.00044 67_[+1]_11 chr9:128771737-128772237 0.00044 61_[+1]_17 chr17:7704792-7705292 0.00048 52_[+1]_26 chr19:12669253-12669753 0.00048 14_[+1]_64 chr14:106348938-10634943 0.00052 65_[-1]_13 chr19:33080835-33081335 0.00052 44_[-1]_34 chr19:55216286-55216786 0.00052 59_[+1]_19 chr19:40529037-40529537 0.00052 65_[-1]_13 chr19:47778246-47778746 0.00052 25_[+1]_53 chr2:197499767-197500267 0.00056 3_[-1]_75 chr5:116574625-116575125 0.00056 63_[-1]_15 chr14:22982495-22982995 0.00056 13_[+1]_65 chr21:45814170-45814670 0.00056 6_[+1]_72 chr10:93702412-93702912 0.00061 1_[-1]_77 chr10:17201423-17201923 0.00066 69_[-1]_9 chr19:10416591-10417091 0.00066 15_[+1]_63 chr20:324254-324754 0.00066 59_[-1]_19 chr19:40403923-40404423 0.00066 34_[-1]_44 chr19:17337119-17337619 0.00071 77_[-1]_1 chr15:69452750-69453250 0.00071 72_[+1]_6 chr16:3157445-3157945 0.00071 74_[+1]_4 chr19:40603759-40604259 0.00076 29_[-1]_49 chr10:5889875-5890375 0.00082 25_[-1]_53 chr12:49060553-49061053 0.00088 74_[-1]_4 chr5:96934985-96935485 0.00095 25_[-1]_53 chr17:18780985-18781485 0.0011 39_[-1]_39 chr1:25247105-25247605 0.0012 4_[-1]_74 chr2:74454736-74455236 0.0015 36_[-1]_42 chr12:113185356-11318585 0.0021 18_[-1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGYGKGGCYGKGKGKGGGS width=22 seqs=256 chr16:88882218-88882718 ( 31) GTGGGCGTGGCTGTGTGCGTGG 1 chr19:17209605-17210105 ( 16) GTGGGCGGGGCCTTGGGTGGGC 1 chr8:142008278-142008778 ( 16) GTGGGTGTGTCTGTGTGGTGGG 1 chr6:169840095-169840595 ( 46) GTGGGCGTGGGTGGGTGTGGTG 1 chr19:35557948-35558448 ( 18) GTGGGCGGGGCTGGGTGGTGGG 1 chr5:180594705-180595205 ( 49) GTGGGTGTGTGAGTGTGTGTGG 1 chr19:33412865-33413365 ( 54) GTGGGTGTGGCTGCGTGGGGAC 1 chr1:111989955-111990455 ( 56) GTGTGTGTGTCTGTGTGTGTGG 1 chr10:7378546-7379046 ( 60) GTGGGCGTGAGTGTGGGTGTGA 1 chr12:132305298-13230579 ( 67) GAGGGCGTGTCTGGGTGAGGGT 1 chr19:6161239-6161739 ( 29) GTGGGTGGGGCCTTGTGAGGAA 1 chr19:1690727-1691227 ( 58) GTGGGCGTGGCTTTGGTGGAGG 1 chr19:40598041-40598541 ( 72) GTGGGTGGGGCCGAGTGGAGGA 1 chr21:44810770-44811270 ( 68) GTGGGTGTGTGCGTGTGTGTAT 1 chr10:72215765-72216265 ( 7) GTGGGCGTGGCCGGGGCGGAGA 1 chr1:245464285-245464785 ( 60) GTGGGTGTGTTCCTGTGTGGGT 1 chr19:6677824-6678324 ( 67) GTGGGCGTGGCATGGGCGGGGC 1 chr19:8922528-8923028 ( 75) GTGGGTGGGGCAGGGAAAGGTG 1 chr1:31387508-31388008 ( 21) GTGGATGTGTCTGGGGGTGTGG 1 chr19:40570505-40571005 ( 32) GTGGGCGGGGCTTTGGAAGGCG 1 chr16:1342857-1343357 ( 54) GAGGGTGGGGCAGGGAAAGGGG 1 chr19:17762620-17763120 ( 52) GTGGGCGTGGCCTCTGGTGGAT 1 chr16:84735819-84736319 ( 25) GTGGGTGTGTGAGTGGCGAGGG 1 chr10:101830482-10183098 ( 1) GTGTGTGTGTGTGTGTGTGTGT 1 chr2:241881406-241881906 ( 1) GTGTGTGTGTGTGTGTGTGTGT 1 chr19:35947352-35947852 ( 46) GTGTGTGTGTGTGTGTGTGTGT 1 chrX:1452844-1453344 ( 35) ATGGGCGTGGCCTGGTGGAGAG 1 chr9:135967560-135968060 ( 24) GTGTGTGTGTGTGTGTGTGTGT 1 chr17:74776156-74776656 ( 59) GGGGGCGGGACCGGGATTGGGG 1 chr1:156661291-156661791 ( 65) GTGTGTGTGTGTGTGTGTGTGT 1 chr6:6007356-6007856 ( 12) GTGTGTGTGTGTGTGTGTGTGT 1 chr19:1113239-1113739 ( 46) GTGGGCGGGGCATGGGCAGTGG 1 chr13:113976072-11397657 ( 3) GTGGGCGGGACCCGGTGGGAGG 1 chr19:43463556-43464056 ( 44) GTGGGCGTGGTCTCAGATGGGG 1 chr20:18587663-18588163 ( 47) GTGGGCGTGGCCGACGTGGGGT 1 chr19:17202158-17202658 ( 1) GTGGGCGTGGCTAAGGATGGCG 1 chr22:20298846-20299346 ( 1) GTGGGCGGGGCCTGCTGTGGAC 1 chr19:36605321-36605821 ( 28) ATGGGCGTGACCTTGAGGGTGA 1 chr12:1907490-1907990 ( 49) GTGGGCGTGTCTGGTGGGTGTG 1 chr17:17206339-17206839 ( 4) GGGGGCGTGGCCTGGCGTGTGG 1 chr9:121650143-121650643 ( 77) GTGGGCGGGGCCGTCTGGGCAG 1 chr15:78000021-78000521 ( 78) GTGGGCGTGGCTCTGGTGAGTG 1 chr5:90529366-90529866 ( 78) GTGGGCGGAGGTGGGAAGGGGC 1 chr17:80980374-80980874 ( 61) GTGTGTGTGTGAGTGTGTGTGT 1 chr6:169840294-169840794 ( 14) GTGGGTGTGGTATGGCATGGGT 1 chr17:35142016-35142516 ( 20) GTGGGTGTGCGTGGATGGGGGC 1 chr15:78750939-78751439 ( 2) GTGGGCGTGGCTCTGGCGAGTG 1 chr12:121839412-12183991 ( 71) GGGGGCGTGGCTGTGTGGCTGT 1 chr4:8117219-8117719 ( 5) GTGGGTGGAGTCTGGTGAGTGG 1 chr17:21235862-21236362 ( 39) ATGGGTGTGGGTGGATGGATGG 1 chr19:3573807-3574307 ( 6) GTGGGCGGGACCTTAGAGTGGG 1 chr17:16991216-16991716 ( 42) GGGGGTGTGTGTGTATGGGGTG 1 chr19:49363430-49363930 ( 50) GTGGGCGTGGCCAGGGAATGAA 1 chr19:49712302-49712802 ( 44) GTGGGTGTGGGTGGTGAGACGA 1 chr8:141171860-141172360 ( 53) GTGGGCGTGCACGGTGGTGGGC 1 chrX:153226325-153226825 ( 45) GGGGGTGTGGTCAGGAATGAGG 1 chr1:235504236-235504736 ( 48) GTGGGCGGAGCCGGTGGGAAGG 1 chr21:39183249-39183749 ( 35) GAGGGCGTGGCCTGTGCGGGGC 1 chr21:46264659-46265159 ( 28) GTGGGTGTGTCCCCTGAAGGGC 1 chr20:63941643-63942143 ( 76) TTGGGTGTGGCAGGGGAAGGAA 1 chr4:4672967-4673467 ( 47) ATGGGAGTGGTCAGGGAGGGGG 1 chr10:132634115-13263461 ( 21) GTGGGTGTGCCCCGGAGAGGCG 1 chr19:17539611-17540111 ( 55) GGGGGCGTGGTCAGAGAGGGGC 1 chr19:35843816-35844316 ( 54) GTGGGTGTGGTTTCCATGGTGG 1 chr17:2975340-2975840 ( 70) ATGGGCGTGTTTGGGAGCAGGA 1 chr19:45972042-45972542 ( 67) GTGGGTGTGACTCCAGAGAGGC 1 chr10:11283933-11284433 ( 61) GTGGGTGGGTGAGGGATGAGTG 1 chr6:41532202-41532702 ( 62) AGGGGTGTGACTGGAGGGGGTG 1 chr12:132303742-13230424 ( 71) GAGGGTGTGCCCCGGAGAGGGT 1 chr19:48321790-48322290 ( 31) GTGGGTGTAACCAGAGGGGGCG 1 chr7:44306790-44307290 ( 30) GAGGGTGTGAGCAGGGAGAGGA 1 chr17:45161293-45161793 ( 63) GTGGGCGGGGCAGCAGGCGCGG 1 chr1:228438264-228438764 ( 10) GAGGGTGTGGCATCATCTGGGG 1 chr17:47971115-47971615 ( 2) GGGGGCGTGAGCGCGGAGAGAG 1 chr9:130299588-130300088 ( 57) GTGGATGGGTGAGTGAATGGGT 1 chr19:53898884-53899384 ( 27) GAGGGCGTGGTCGGGCGGATGA 1 chr1:30651335-30651835 ( 62) GTGGGCGGGTAAGGAGGAGGTA 1 chr21:45442671-45443171 ( 31) GTGGGTGGTGGTGCTGGTGTGG 1 chr19:8592359-8592859 ( 18) GTGGGCGTGGCCAACGCGGGAA 1 chr8:123396246-123396746 ( 51) GTGGGCGGGACAGACGGCGGAG 1 chr17:7234296-7234796 ( 6) GTGGGCGGGTACCTGGAGGAAG 1 chr5:139747091-139747591 ( 26) GTGGGCGGGGCTGCAGCAGAGC 1 chr19:7871928-7872428 ( 43) TGGGGCGTGGCCGGCAGGGTGG 1 chr19:49676218-49676718 ( 22) GTGGGCGTTCCTGGCAGGGGGA 1 chr19:36604681-36605181 ( 49) GTGTGTGGTGGTGTGAGTGGGC 1 chr9:137254961-137255461 ( 7) GCGGGCGGGACCGGGTGGGCGC 1 chr10:100650919-10065141 ( 14) GTGGGAGTGGTGGAGGTGGTGG 1 chr19:1082390-1082890 ( 53) GCGGGCGTGGCCCGGGTAGGAG 1 chr10:132752275-13275277 ( 33) AGGGGCGTGGCGTGGAGGAGGT 1 chr5:176653307-176653807 ( 51) GAGTGTGTGACTAGGTGTGGTT 1 chr12:53727395-53727895 ( 71) GAGGGTGTGGCCAGCAAAGGAC 1 chr1:35031549-35032049 ( 23) GTGGGCGGGACGGCGGGGCGGA 1 chr17:993480-993980 ( 12) GTGGGTGGATTATGCGAGGTGG 1 chr20:62598569-62599069 ( 16) CTGGGCGTGGCTGTGTTGGGTT 1 chr19:12840484-12840984 ( 45) GTGGGCGGAGACTCAGGTGGGA 1 chr17:78140279-78140779 ( 55) GGGGGCGGGGCCCTTGGAGGTC 1 chr6:692934-693434 ( 39) ATGGGCGGAGCCTTCAGGGGAG 1 chr19:29420747-29421247 ( 3) GTGTATGTGTGAGTGTGGGTGG 1 chr19:39970721-39971221 ( 57) GAGGGCGGGACGGGAGCTGTGG 1 chr19:42325313-42325813 ( 23) GTGGGAGGGACGGCGAAGAGGA 1 chr19:40335917-40336417 ( 37) CTGGGCGTGACCGTGGTGGGTG 1 chr2:130727498-130727998 ( 75) GTGGGCGTGGCCCCGGGCTGCG 1 chr15:72230289-72230789 ( 52) GGGGGAGGGGCGGCGAGAGGGA 1 chr12:120725557-12072605 ( 43) GGGGGCGGGACCCGGGACAGAG 1 chr11:65215702-65216202 ( 52) GTGGGTGGATAAGCGGGTGAGT 1 chr15:65868938-65869438 ( 28) GGGGGCGGGGTTCTCTGAGGAT 1 chr19:35903617-35904117 ( 64) TTGGGCGGGGCTGCGGCGTGGG 1 chr20:33709993-33710493 ( 56) AAGGGCGTGGTTCTGGATAGAG 1 chr4:3414791-3415291 ( 14) AGGGGCGTGTGTGAGAGGGGCG 1 chr10:11283733-11284233 ( 4) GTGGGTGGATGAGGGATGAGTG 1 chr1:1919271-1919771 ( 48) GTGGGCGGGGTTTATGCTGCGT 1 chr17:16380868-16381368 ( 72) GTGGACGTGGTTGGTGATTGGC 1 chr8:630756-631256 ( 68) GTGGGTGGTCACGGGAGGGTGT 1 chr17:63621447-63621947 ( 52) GGGGATGGGGCCGCAGAGGTGG 1 chr9:133238378-133238878 ( 3) AAGGGCGGGGCAGAGGAGTGGG 1 chr19:43475151-43475651 ( 45) GAGGGCGGGGCCACTCAGGGGG 1 chr22:45309531-45310031 ( 26) GTGGGCGGGACCGTGGTCACCG 1 chr19:5308832-5309332 ( 20) GTGTGTGGAGGTGGGAGGTGAG 1 chr15:74396891-74397391 ( 16) GTGGGCGTGACTCACCTTGGGG 1 chr1:151189988-151190488 ( 72) GAGGGTGGGACTGGGAGTCTCT 1 chr10:132163298-13216379 ( 40) GAGTGTGTGTTATGAGGGGTGT 1 chr20:1466689-1467189 ( 52) TGGGGCGGGGCTGCGGGCGGGC 1 chr21:36385141-36385641 ( 29) GGGGGCGGGGCCTGCGGCGCGC 1 chr10:100807247-10080774 ( 72) GTGGGCGGTGGTGTGTGAGCAC 1 chr1:40257873-40258373 ( 69) GGGGGCGGGTATCGGCGTAGGG 1 chrX:15737878-15738378 ( 72) TTGGGCGTGACCGGGGCAATAA 1 chr15:76905006-76905506 ( 73) GGGTGAGTGTCCGCGAGGGGCG 1 chr19:6516016-6516516 ( 53) GTGGGCGGAGTCTAGGGAGAAT 1 chr12:6937943-6938443 ( 9) GGGGCTGTGGCTGGGTGGGCGG 1 chr6:13873597-13874097 ( 1) GAGGGAGGGGGCGGAGGTGGCC 1 chr11:69376959-69377459 ( 72) GTGGGCGTATGTGTTCACGGGT 1 chr19:39402377-39402877 ( 33) GCGGGCGTGGCCAAGGGCGGCG 1 chr19:36014215-36014715 ( 67) ATGGGTGGGACGGGGGCGGCAG 1 chr7:75914809-75915309 ( 62) GGGGGTGGGGGCGTGGCCATTG 1 chr16:89011703-89012203 ( 11) GTGGGTGGATGGATAGATGGGT 1 chr1:228109115-228109615 ( 71) TTGGGCGGGGCCGGCGCGGCGT 1 chr19:38402923-38403423 ( 54) GTGGGAGGGGGCCGCGGTGGCC 1 chr19:36054026-36054526 ( 55) GCGGGTGGGGCGGGGTTAGGCG 1 chr19:38636832-38637332 ( 24) TGGGGTGTGGTGTGGTGGGGGC 1 chr19:7522296-7522796 ( 66) GGGGGCGGGACCAGAGGCGGTC 1 chr19:35958963-35959463 ( 9) GTGGGTGTGCCCGCCCGGGGCA 1 chr19:40465842-40466342 ( 35) GGGGGCGTGAGCTACGAGAGGC 1 chr6:43771243-43771743 ( 45) GTGGGAGGGTACCCGGAGAGAG 1 chr7:150405126-150405626 ( 66) GGGGGCGGGTCACTGCGGGCGT 1 chr19:34404313-34404813 ( 28) GAGGGCGGGTGCCGGAGCTGGG 1 chr19:41310147-41310647 ( 35) GCGGGTGGGTGCGGTTGCGGTG 1 chr5:138338141-138338641 ( 8) GAGGGAGGGACGGTTGAGGTGC 1 chr19:4081557-4082057 ( 6) GGGGGAGTAGGAGGGAGGAAGG 1 chr19:35899516-35900016 ( 39) CGGGGCGGGGGCGGGAGGAGGT 1 chr18:74495901-74496401 ( 45) GTGGGCGGGACGGAAATGGAGC 1 chr1:155050363-155050863 ( 42) GCGGGTGGCGCTGTTGGGAGGT 1 chr15:101295102-10129560 ( 76) GGGGATGTGTCTCGTTCTGGGT 1 chr5:5340267-5340767 ( 33) GTGTGTGTGGAATTCTCTGTGC 1 chr21:6565242-6565742 ( 2) GTGTGTGTGGTGTGTGTGGAGT 1 chr17:7484043-7484543 ( 69) AGGGGCGGGGACGCGAGGGCGA 1 chr22:20117111-20117611 ( 14) GCGGGTGTCGCCGGGAGTGCGC 1 chr1:36088630-36089130 ( 37) GAGGGCGGCACCGGAAGTGGCG 1 chr19:48614800-48615300 ( 66) GCGGGTGGGGCGTGGACCGGGA 1 chr21:31873932-31874432 ( 6) GGGGTTGGGGGCTTGGGAGGGG 1 chr19:38975209-38975709 ( 10) GAGGGAGGGCCCGGGAAAGCGA 1 chr16:89008655-89009155 ( 7) GTGGGTGTGTCAGGGTCCTCCT 1 chr12:132161226-13216172 ( 3) GAGGGAGGAGGAGGTGAGGGAG 1 chr10:97687194-97687694 ( 33) GGGGGCGGAGAGGGCGGTGGGC 1 chr17:7717065-7717565 ( 43) GTGGGTGCAGCTGGATCCGGGG 1 chr9:127771228-127771728 ( 73) AGGGGTGTGCTAGGGGGCGAGG 1 chr19:40750896-40751396 ( 37) GTGGGCGGAGCACCCTAAATGG 1 chr12:53675833-53676333 ( 46) AGGGGCGGAGCAGCGGGAAGAG 1 chr16:89007882-89008382 ( 64) GTGGGTGTGTCAGGGTCCTCCT 1 chr6:30907743-30908243 ( 33) GTGGGCGGAGTTGGTTCTGCCT 1 chr16:3400903-3401403 ( 73) GTGGGCGTCTCCGCAGCGAGTG 1 chr8:11016268-11016768 ( 43) GTGGGAGGGAAGGCGTGGGCGA 1 chr11:120335855-12033635 ( 22) GTGGGTGGGCCTCCCGGGGCTG 1 chr12:121686840-12168734 ( 39) AGGGGCGGGTCTGGTTAATTGC 1 chr19:38335537-38336037 ( 15) GAGGGCGTGCCTCTGCAAAGGC 1 chr1:30191256-30191756 ( 48) ATGGGCGTGGTCACTGCTATAG 1 chr9:129642023-129642523 ( 68) GTGGGCGGCCCCAGCGGAGTGG 1 chr6:13614994-13615494 ( 13) AAGGGCGTGGCCTGTAGGCAGT 1 chr10:132453012-13245351 ( 6) AGGGGCGGGGTCGCGGGGCAGG 1 chr8:37736341-37736841 ( 3) GGGGGTGTGGTCTTCTCGCGTG 1 chr1:224615790-224616290 ( 62) TGGGGCGGGACCGGTTGGAGCA 1 chr10:132671153-13267165 ( 15) GAGGGCGGAGTCCGAAGCAGGG 1 chr1:154558610-154559110 ( 27) GGGGGCGGGAAAGACGGAGAGA 1 chr19:43798580-43799080 ( 69) GTGGGCGTTGCATTTGTCAGTT 1 chr19:40806807-40807307 ( 17) GTGGGAGGGAGTGATGCAGGCA 1 chr14:90383254-90383754 ( 36) GCGGGCGGGGCGAGGCAAGGGC 1 chr15:82540349-82540849 ( 66) AAGGGAGGAGCCGTCGGGGGCG 1 chr19:38224000-38224500 ( 37) GGGGGCGGGAGCACGAGGGCCA 1 chr19:40662760-40663260 ( 57) GTGGACGGGGTAGGTTACGGCC 1 chr22:19959150-19959650 ( 58) GTGGGCGTGGTCCCAAAGTCAA 1 chr19:29873380-29873880 ( 41) GGGCGCGGGGCCGGGTCGGAGC 1 chr5:134371107-134371607 ( 51) GGGGGCGGGACGCGGGAGCGCG 1 chr19:42302144-42302644 ( 75) GCGGGTGTGCTAGCGTTGGGAC 1 chr10:87862153-87862653 ( 6) GTGGGCGGGGCGAGGAGACCTA 1 chr9:85743215-85743715 ( 56) GGGGGTGGGGGAGTAGCTCTAA 1 chr15:68229230-68229730 ( 50) GTGGGCGCGCGCCGGGGTGAGA 1 chr19:40798641-40799141 ( 76) GGGGGCGTTTCTTGCATGTTGG 1 chr12:122980338-12298083 ( 43) GTGGGCGCGCCCGGGACGGAAC 1 chr16:30923078-30923578 ( 42) GAGGGCGTGCCCAGCCGGGAGC 1 chr17:63600628-63601128 ( 7) GGGGACGTGTTTTTGGAGCGAA 1 chr22:35257414-35257914 ( 3) GCGGGTGGCGACGGGGCGGGGC 1 chr19:35154710-35155210 ( 48) GCGGGCGGGAGCGAGGCAGAGC 1 chr21:34073388-34073888 ( 38) AGGGGCGGGACGGCGGGGACAG 1 chr19:2945126-2945626 ( 58) GGGGGCGGGACCCGCGTGCGTG 1 chr16:86563761-86564261 ( 63) GTGGGTGTTGGCGTCATCTTGA 1 chr19:36114650-36115150 ( 69) GCGGGAGGGGCCAGGCCTAGGT 1 chr19:38506883-38507383 ( 60) ATGGGCGGGGCTTAAGCACAGG 1 chr5:1950732-1951232 ( 57) GTGCGTGTGTCATCTGCTGTGC 1 chr19:15432578-15433078 ( 9) AGGGGCGGGGCGGAGCGGGTTT 1 chr19:45406315-45406815 ( 57) TGGTGCGGGAGCGCGGGGGTAG 1 chr19:37594258-37594758 ( 53) GGGGGTGTGGTGCTGCTAGTTG 1 chr19:40420981-40421481 ( 61) GAGGGAGTGTCACCGTGAAAAC 1 chr16:21599269-21599769 ( 75) GGGGGAGGTGCCGAGGCTGCGC 1 chr12:57752246-57752746 ( 26) GTGTAAGGGGGCGGAGGGGCGA 1 chr19:45078984-45079484 ( 52) GGGGGCGCCGGCGGAAGTGGGG 1 chr19:55599857-55600357 ( 25) GTGGTTGGGGATGTGGTGCTGG 1 chr11:18322017-18322517 ( 32) AGGGGCGTGACTCGTCACGTGA 1 chr22:39520180-39520680 ( 15) CAGGGCGTAGCTGTGACGAGAA 1 chr19:55643335-55643835 ( 22) GTGTGTGTTTCTGGCCGGAGCC 1 chr5:176388746-176389246 ( 32) GTGGGTGCGGTAGGAACTGCAC 1 chr9:137422975-137423475 ( 42) GCGGGCGGGGCGAGGAAGCCGG 1 chr20:35742146-35742646 ( 62) GGGGATGGGAATATCTGTGGCG 1 chr16:22296989-22297489 ( 2) GGGGGCGTGGGTTCGAATCCCA 1 chr17:74514093-74514593 ( 28) GGGGGTGGTCATGTGATAGGTG 1 chr19:5803915-5804415 ( 47) GAGCGCGGAGCCGTCGGGGAGG 1 chr19:1652608-1653108 ( 53) GTGTGTGCTTCCGCGGACGGGG 1 chr1:234373431-234373931 ( 32) GTGGGCGGGCAGAGAGGTCGGC 1 chr11:57741108-57741608 ( 41) ATGGGTGGTTCCGTCAGGCGCT 1 chr9:128787006-128787506 ( 68) GGGGGCGGCGGCGGCGGCGGCA 1 chr9:128771737-128772237 ( 62) GCGGGCGGCGGCGGCAGAAGGT 1 chr17:7704792-7705292 ( 53) GCGGGCGGGAGGTGCGCGAGGT 1 chr19:12669253-12669753 ( 15) GAGGGCGGATTTTAGAGTAACA 1 chr14:106348938-10634943 ( 66) GGGGGCGGGCGCAGGTGCTGCT 1 chr19:33080835-33081335 ( 45) AAGGCTGGGTCCGCGGGCGGGG 1 chr19:55216286-55216786 ( 60) GTGGCTGTGTCCTGTGTTGCCG 1 chr19:40529037-40529537 ( 66) GTCGGCGTGGGCGGGCAGGGAC 1 chr19:47778246-47778746 ( 26) CTGGGAGGGGACGCGCGGAGGG 1 chr2:197499767-197500267 ( 4) AGGGGCGGGGCTCGCGCGCAGG 1 chr5:116574625-116575125 ( 64) GTAGGCGGAGTTGCGGAAGGAG 1 chr14:22982495-22982995 ( 14) GTGTGCGTGCAGCGGAAGGCGC 1 chr21:45814170-45814670 ( 7) GGGTGAGTGGTGAGTGATGAGT 1 chr10:93702412-93702912 ( 2) GGGGACGGTGCCATTTAGATGT 1 chr10:17201423-17201923 ( 70) GAGGGAGCGGCGCGATGGAGGG 1 chr19:10416591-10417091 ( 16) GGGGGCGGGTTCTAGGCCCGAC 1 chr20:324254-324754 ( 60) AGGCGCGTGGCGGGGAGGGGCC 1 chr19:40403923-40404423 ( 35) GTGGGTGTGCCCCGACGTCCTG 1 chr19:17337119-17337619 ( 78) GCGGGAGGCGGTATGGAGGTAG 1 chr15:69452750-69453250 ( 73) GAGTGCGGGCGCGGGCCGGCGG 1 chr16:3157445-3157945 ( 75) GTGGGCGTGTGTCCCGTCTGCC 1 chr19:40603759-40604259 ( 30) CGGGGCGGAGCCACGAGCGGGA 1 chr10:5889875-5890375 ( 26) GGGGGCGTGCTGACGGACGGCC 1 chr12:49060553-49061053 ( 75) GTGTGCGTAGAACTGCAGAGTC 1 chr5:96934985-96935485 ( 26) GCGGGCGCCGCAGGATGTGGGC 1 chr17:18780985-18781485 ( 40) GCGTACGGGTCCGGGTCGGAAC 1 chr1:25247105-25247605 ( 5) GAGGGAGGCGTCGACGGCGTGC 1 chr2:74454736-74455236 ( 37) TTGTGCGGGGCACGCTTCGCGT 1 chr12:113185356-11318585 ( 19) GTGCGTGTGTACTAGGCCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 8.26488 E= 2.4e-104 -74 -376 138 -222 -46 -210 -32 156 -554 -634 164 -1464 -1464 -402 147 -84 -196 -476 156 -454 -96 81 -1464 93 -1464 -1464 165 -1464 -1464 -335 67 135 -74 -276 131 -174 -19 -182 74 26 -108 76 -49 -30 -19 45 -144 67 -64 -102 79 -5 -96 -79 58 43 -42 -99 86 -54 24 -189 54 39 26 -89 67 -79 -19 -118 51 43 4 -202 106 -130 -74 -122 80 13 -12 -118 87 -74 -19 -54 45 4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 256 E= 2.4e-104 0.109375 0.023438 0.828125 0.039062 0.132812 0.074219 0.253906 0.539062 0.003906 0.003906 0.992188 0.000000 0.000000 0.019531 0.878906 0.101562 0.046875 0.011719 0.933594 0.007812 0.093750 0.558594 0.000000 0.347656 0.000000 0.000000 1.000000 0.000000 0.000000 0.031250 0.503906 0.464844 0.109375 0.046875 0.789062 0.054688 0.160156 0.089844 0.531250 0.218750 0.085938 0.539062 0.226562 0.148438 0.160156 0.433594 0.117188 0.289062 0.117188 0.156250 0.550781 0.175781 0.093750 0.183594 0.476562 0.246094 0.136719 0.160156 0.578125 0.125000 0.214844 0.085938 0.460938 0.238281 0.218750 0.171875 0.503906 0.105469 0.160156 0.140625 0.453125 0.246094 0.187500 0.078125 0.660156 0.074219 0.109375 0.136719 0.554688 0.199219 0.167969 0.140625 0.582031 0.109375 0.160156 0.218750 0.433594 0.187500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGKGGCYGKGKGKGGGS MEME-1 regular expression -------------------------------------------------------------------------------- G[TG]GGG[CT]G[GT]G[GT][CG][CT]G[GT]G[GTA][GA][GT]GGG[GC] -------------------------------------------------------------------------------- Time 396.62 secs. ******************************************************************************** ******************************************************************************** MOTIF MCACACCCACMC MEME-2 width = 12 sites = 61 llr = 635 E-value = 4.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5:8:7:2:a152 pos.-specific C 3a:a:86a:947 probability G 1:::3::::::: matrix T ::2::12::111 bits 2.5 * 2.2 * 2.0 * 1.7 *** ** Relative 1.5 *** ** Entropy 1.2 **** ** (15.0 bits) 1.0 ***** *** 0.7 ****** ***** 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel ACACACCCACAC consensus C T G A CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr21:44810770-44811270 + 18 6.57e-08 acacccatgc acacacccacac atgcacacac chr10:7378546-7379046 - 7 6.57e-08 CCCCACAGCG ACACACCCACAC TCACAC chr1:245464285-245464785 - 82 6.57e-08 CGTGCAC ACACACCCACAC ACCCACACAG chr10:101830482-10183098 + 88 1.03e-07 GCCTCCCCAT ACACACACACAC G chr2:241881406-241881906 - 23 1.03e-07 CTGTCCAGCC ACACACACACAC ACACACACAC chr19:35947352-35947852 - 68 1.03e-07 CGACACACAC ACACACACACAC ACACACACAC chr17:40476123-40476623 - 47 1.03e-07 ACACACACAC ACACACACACAC GCCCCTCTAC chr1:156661291-156661791 - 87 1.03e-07 AC ACACACACACAC ACACACACAC chr16:88882218-88882718 - 11 6.48e-07 ACGCACACAG CCACACCCACAC ACAGCCATAC chr1:31387508-31388008 + 69 7.51e-07 ACACCCCGAG ACACATCCACAC GGACGACCTC chr6:169840294-169840794 + 48 1.02e-06 catgctcaca acacacccactc catgccgcgc chr5:180594705-180595205 - 84 1.02e-06 CACCC ACACATACACAC CCTCACACAC chr19:17202158-17202658 + 44 1.52e-06 catgcttatg ccacacccaccc atgccctgcc chr9:135967560-135968060 - 68 1.52e-06 CATGCACACA ACACGCCCACAC ACAGGCGCGC chr19:29420747-29421247 + 56 1.52e-06 TCGTCTCCAC CCACACTCACAC ATAAATTCTC chr17:16991216-16991716 + 69 1.52e-06 ccccctgcgc acacgcccacac ccggacacag chr17:80980374-80980874 - 49 1.82e-06 ACACACACAC ACTCACTCACAC ACTCATTCAC chr16:89008655-89009155 + 54 1.95e-06 AGGACCCGTG ACACACCCACCT CATCTTTGCC chr16:89007882-89008382 + 9 1.95e-06 GACCCGTG ACACACCCACCT CATCTTTGCC chr16:84735819-84736319 - 65 2.45e-06 TCCCCTCGCC ACTCACACACCC ACAGGTCCAA chr11:69376959-69377459 + 4 3.20e-06 CGC ACACGCCCACCC GTGAATGCAG chr8:142008278-142008778 + 51 3.20e-06 cccagacaca ccacacccacca tacagacatg chr6:6007356-6007856 + 34 3.83e-06 acacacacac acacacacaAAc gcgcgcgcgc chr21:6565242-6565742 + 66 4.17e-06 tccacacact ccacacacacca cacactccac chr6:169840095-169840595 + 79 5.71e-06 ccagaccaca ccacgcccacac accacaccca chr12:1907490-1907990 - 9 5.71e-06 CGTCCACCAG ACACGCCCACCA GGCACACC chr19:6677824-6678324 - 35 5.71e-06 CGCCCCTGCG CCACGCCCACAC CACGCCCCTT chr8:141171860-141172360 - 16 5.71e-06 CCACCACTGC GCACACCCACCC TATGCAGCGT chr1:111989955-111990455 - 34 5.71e-06 ACGCACTCAC ACTCATACACAC CCTCGCGCGC chr19:1690727-1691227 + 35 5.71e-06 CAAACACAGG CCACGCCCACAC AAGGCAGCGC chr21:45814170-45814670 - 35 6.55e-06 ACCACTCACC ACTCACTCACCA CTTACCACTC chr17:993480-993980 + 89 7.04e-06 CTCACATAAT CCACACTCACAT chr16:89011703-89012203 + 39 7.04e-06 ccacccatgc actcatccaccc atctatccat chr9:130299588-130300088 + 1 7.04e-06 . actcatccaccc atccattcat chr10:11283733-11284233 - 43 8.48e-06 TCCACTCACC ACACACTCATCC GTCATCCACC chr19:17209605-17210105 - 68 8.48e-06 CTACCCGAGA CCACACCCACTA CCCGGTCCCA chr10:132634115-13263461 - 55 9.79e-06 CCTCTCTGGG GCACACCCACCA AGGGAGATGA chr15:74396891-74397391 - 54 9.79e-06 TCTGCCCCTT ACTCATACACCC TTATTGACTC chr17:21235862-21236362 + 5 1.18e-05 atcc actcattcaccc atccacccac chr19:33412865-33413365 + 30 1.18e-05 ACAGTGACAT GCACACCCACAT ACAGCAGCAC chr19:3573807-3574307 + 89 1.54e-05 CAGCAGAAAA CCACGCCCACCA chr18:48946348-48946848 - 32 1.54e-05 ACAGCTGGTT ACTCACCCAAAA CGTTTTGTTG chr1:28581455-28581955 + 72 1.72e-05 CTCCTCCGTG CCACATTCACCA CCATCTCGAG chr5:176653307-176653807 + 21 1.72e-05 AACCACAAAC ACACAGTCACAC ACTGTCACCC chr11:65215702-65216202 - 86 1.72e-05 CTC ACTCGCTCACCC GCTCACTCGC chr10:11283933-11284433 - 11 1.82e-05 CGCACTCATC CCTCATCCACCC ACCACACACT chr19:35154710-35155210 + 3 1.82e-05 AT CCACGCCCACAT CTCTCTGCCT chr1:30191256-30191756 + 18 2.12e-05 ATAGCAGTGA CCACACCCATCA GAGCAGCAGC chr19:42302144-42302644 + 38 2.12e-05 GCTGGCTCCG CCACGCCCACTC CTACCCCTCG chr9:133238378-133238878 - 81 2.12e-05 CGCTCCGA CCACGCCCACTC TACCCCTCAA chr19:8922528-8923028 - 16 2.70e-05 CTGATGCCAG CCACGCCCACCT TTCCCTGCCC chr19:36604681-36605181 + 89 2.70e-05 ccacagaacg gcacacacaaac chr10:100807247-10080774 + 23 3.06e-05 ACGGTACTGT GCTCACACACCA CTGTCCACCT chr12:132303742-13230424 + 37 3.33e-05 TCACCGGGGC ACACCCTCACCC AGACACAGCC chr12:132305298-13230579 + 1 3.33e-05 . ACACCCTCACCC GGGCACAGCC chr19:37594258-37594758 + 23 4.21e-05 GGCTCCAGGG GCACACTCATAA ATTCGGTGCG chr9:128787006-128787506 - 17 4.54e-05 CCGGCGGGAA ACACAGCCACTA GCCTGCGCGT chr19:34404313-34404813 - 80 4.54e-05 CCCCCAGGA CCTCGCCCACTC CCTCCGCACC chr19:34677018-34677518 - 76 5.32e-05 TCATTCCTGC GCTCACACAAAC GTTTCCCTCC chr2:130727498-130727998 - 6 5.62e-05 TAGCCCAAGG CCACGCCCATCA CAGCC chr17:32341944-32342444 + 87 6.37e-05 GGCTCCCGGC CCTCGCACACCT GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:44810770-44811270 6.6e-08 17_[+2]_71 chr10:7378546-7379046 6.6e-08 6_[-2]_82 chr1:245464285-245464785 6.6e-08 81_[-2]_7 chr10:101830482-10183098 1e-07 87_[+2]_1 chr2:241881406-241881906 1e-07 22_[-2]_66 chr19:35947352-35947852 1e-07 67_[-2]_21 chr17:40476123-40476623 1e-07 46_[-2]_42 chr1:156661291-156661791 1e-07 86_[-2]_2 chr16:88882218-88882718 6.5e-07 10_[-2]_78 chr1:31387508-31388008 7.5e-07 68_[+2]_20 chr6:169840294-169840794 1e-06 47_[+2]_41 chr5:180594705-180595205 1e-06 83_[-2]_5 chr19:17202158-17202658 1.5e-06 43_[+2]_45 chr9:135967560-135968060 1.5e-06 67_[-2]_21 chr19:29420747-29421247 1.5e-06 55_[+2]_33 chr17:16991216-16991716 1.5e-06 68_[+2]_20 chr17:80980374-80980874 1.8e-06 48_[-2]_40 chr16:89008655-89009155 1.9e-06 53_[+2]_35 chr16:89007882-89008382 1.9e-06 8_[+2]_80 chr16:84735819-84736319 2.5e-06 64_[-2]_24 chr11:69376959-69377459 3.2e-06 3_[+2]_85 chr8:142008278-142008778 3.2e-06 50_[+2]_38 chr6:6007356-6007856 3.8e-06 33_[+2]_55 chr21:6565242-6565742 4.2e-06 65_[+2]_23 chr6:169840095-169840595 5.7e-06 78_[+2]_10 chr12:1907490-1907990 5.7e-06 8_[-2]_80 chr19:6677824-6678324 5.7e-06 34_[-2]_54 chr8:141171860-141172360 5.7e-06 15_[-2]_73 chr1:111989955-111990455 5.7e-06 33_[-2]_55 chr19:1690727-1691227 5.7e-06 34_[+2]_54 chr21:45814170-45814670 6.5e-06 34_[-2]_54 chr17:993480-993980 7e-06 88_[+2] chr16:89011703-89012203 7e-06 38_[+2]_50 chr9:130299588-130300088 7e-06 [+2]_88 chr10:11283733-11284233 8.5e-06 42_[-2]_46 chr19:17209605-17210105 8.5e-06 67_[-2]_21 chr10:132634115-13263461 9.8e-06 54_[-2]_34 chr15:74396891-74397391 9.8e-06 53_[-2]_35 chr17:21235862-21236362 1.2e-05 4_[+2]_84 chr19:33412865-33413365 1.2e-05 29_[+2]_59 chr19:3573807-3574307 1.5e-05 88_[+2] chr18:48946348-48946848 1.5e-05 31_[-2]_57 chr1:28581455-28581955 1.7e-05 71_[+2]_17 chr5:176653307-176653807 1.7e-05 20_[+2]_68 chr11:65215702-65216202 1.7e-05 85_[-2]_3 chr10:11283933-11284433 1.8e-05 10_[-2]_78 chr19:35154710-35155210 1.8e-05 2_[+2]_86 chr1:30191256-30191756 2.1e-05 17_[+2]_71 chr19:42302144-42302644 2.1e-05 37_[+2]_51 chr9:133238378-133238878 2.1e-05 80_[-2]_8 chr19:8922528-8923028 2.7e-05 15_[-2]_73 chr19:36604681-36605181 2.7e-05 88_[+2] chr10:100807247-10080774 3.1e-05 22_[+2]_66 chr12:132303742-13230424 3.3e-05 36_[+2]_52 chr12:132305298-13230579 3.3e-05 [+2]_88 chr19:37594258-37594758 4.2e-05 22_[+2]_66 chr9:128787006-128787506 4.5e-05 16_[-2]_72 chr19:34404313-34404813 4.5e-05 79_[-2]_9 chr19:34677018-34677518 5.3e-05 75_[-2]_13 chr2:130727498-130727998 5.6e-05 5_[-2]_83 chr17:32341944-32342444 6.4e-05 86_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCACACCCACMC width=12 seqs=61 chr21:44810770-44811270 ( 18) ACACACCCACAC 1 chr10:7378546-7379046 ( 7) ACACACCCACAC 1 chr1:245464285-245464785 ( 82) ACACACCCACAC 1 chr10:101830482-10183098 ( 88) ACACACACACAC 1 chr2:241881406-241881906 ( 23) ACACACACACAC 1 chr19:35947352-35947852 ( 68) ACACACACACAC 1 chr17:40476123-40476623 ( 47) ACACACACACAC 1 chr1:156661291-156661791 ( 87) ACACACACACAC 1 chr16:88882218-88882718 ( 11) CCACACCCACAC 1 chr1:31387508-31388008 ( 69) ACACATCCACAC 1 chr6:169840294-169840794 ( 48) ACACACCCACTC 1 chr5:180594705-180595205 ( 84) ACACATACACAC 1 chr19:17202158-17202658 ( 44) CCACACCCACCC 1 chr9:135967560-135968060 ( 68) ACACGCCCACAC 1 chr19:29420747-29421247 ( 56) CCACACTCACAC 1 chr17:16991216-16991716 ( 69) ACACGCCCACAC 1 chr17:80980374-80980874 ( 49) ACTCACTCACAC 1 chr16:89008655-89009155 ( 54) ACACACCCACCT 1 chr16:89007882-89008382 ( 9) ACACACCCACCT 1 chr16:84735819-84736319 ( 65) ACTCACACACCC 1 chr11:69376959-69377459 ( 4) ACACGCCCACCC 1 chr8:142008278-142008778 ( 51) CCACACCCACCA 1 chr6:6007356-6007856 ( 34) ACACACACAAAC 1 chr21:6565242-6565742 ( 66) CCACACACACCA 1 chr6:169840095-169840595 ( 79) CCACGCCCACAC 1 chr12:1907490-1907990 ( 9) ACACGCCCACCA 1 chr19:6677824-6678324 ( 35) CCACGCCCACAC 1 chr8:141171860-141172360 ( 16) GCACACCCACCC 1 chr1:111989955-111990455 ( 34) ACTCATACACAC 1 chr19:1690727-1691227 ( 35) CCACGCCCACAC 1 chr21:45814170-45814670 ( 35) ACTCACTCACCA 1 chr17:993480-993980 ( 89) CCACACTCACAT 1 chr16:89011703-89012203 ( 39) ACTCATCCACCC 1 chr9:130299588-130300088 ( 1) ACTCATCCACCC 1 chr10:11283733-11284233 ( 43) ACACACTCATCC 1 chr19:17209605-17210105 ( 68) CCACACCCACTA 1 chr10:132634115-13263461 ( 55) GCACACCCACCA 1 chr15:74396891-74397391 ( 54) ACTCATACACCC 1 chr17:21235862-21236362 ( 5) ACTCATTCACCC 1 chr19:33412865-33413365 ( 30) GCACACCCACAT 1 chr19:3573807-3574307 ( 89) CCACGCCCACCA 1 chr18:48946348-48946848 ( 32) ACTCACCCAAAA 1 chr1:28581455-28581955 ( 72) CCACATTCACCA 1 chr5:176653307-176653807 ( 21) ACACAGTCACAC 1 chr11:65215702-65216202 ( 86) ACTCGCTCACCC 1 chr10:11283933-11284433 ( 11) CCTCATCCACCC 1 chr19:35154710-35155210 ( 3) CCACGCCCACAT 1 chr1:30191256-30191756 ( 18) CCACACCCATCA 1 chr19:42302144-42302644 ( 38) CCACGCCCACTC 1 chr9:133238378-133238878 ( 81) CCACGCCCACTC 1 chr19:8922528-8923028 ( 16) CCACGCCCACCT 1 chr19:36604681-36605181 ( 89) GCACACACAAAC 1 chr10:100807247-10080774 ( 23) GCTCACACACCA 1 chr12:132303742-13230424 ( 37) ACACCCTCACCC 1 chr12:132305298-13230579 ( 1) ACACCCTCACCC 1 chr19:37594258-37594758 ( 23) GCACACTCATAA 1 chr9:128787006-128787506 ( 17) ACACAGCCACTA 1 chr19:34404313-34404813 ( 80) CCTCGCCCACTC 1 chr19:34677018-34677518 ( 76) GCTCACACAAAC 1 chr2:130727498-130727998 ( 6) CCACGCCCATCA 1 chr17:32341944-32342444 ( 87) CCTCGCACACCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.7593 E= 4.6e-023 157 12 -147 -1257 -1257 165 -1257 -1257 205 -1257 -1257 43 -1257 165 -1257 -1257 195 -327 -28 -1257 -1257 137 -327 -31 43 81 -1257 11 -1257 165 -1257 -1257 246 -1257 -1257 -1257 -147 145 -1257 -147 133 48 -1257 -89 33 105 -1257 -67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 61 E= 4.6e-023 0.540984 0.344262 0.114754 0.000000 0.000000 1.000000 0.000000 0.000000 0.754098 0.000000 0.000000 0.245902 0.000000 1.000000 0.000000 0.000000 0.704918 0.032787 0.262295 0.000000 0.000000 0.819672 0.032787 0.147541 0.245902 0.557377 0.000000 0.196721 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.065574 0.868852 0.000000 0.065574 0.459016 0.442623 0.000000 0.098361 0.229508 0.655738 0.000000 0.114754 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCCACMC MEME-2 regular expression -------------------------------------------------------------------------------- [AC]C[AT]C[AG]C[CA]CAC[AC][CA] -------------------------------------------------------------------------------- Time 715.22 secs. ******************************************************************************** ******************************************************************************** MOTIF SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 width = 34 sites = 9 llr = 251 E-value = 2.6e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::8911:4:a411:3::2:7:::12491:62681 pos.-specific C 732:::::1::4:a:17::19:67::::921:1: probability G 31:126a4::649:6::3a:::1146111:7419 matrix T :6::73:19:::::1934:21a313::8:2:::: bits 2.5 * * 2.2 * * 2.0 * ** * * * 1.7 * * ** * * * * * Relative 1.5 ** * ** * * * * ** Entropy 1.2 ** * ** ** * **** *** *** (40.2 bits) 1.0 *** * *** ** ** **** **** *** 0.7 *********** ********** ***** *** 0.5 *********** ********************** 0.2 ********************************** 0.0 ---------------------------------- Multilevel CTAATGGATAGCGCGTCTGACTCCGGATCAGAAG consensus GCC GT G AG A TG T T TA CAG sequence A A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------------- chr15:89334829-89335329 + 55 5.07e-20 gccgcgtggc ctaatggataaggcgtctgacttcggatcagaag attgcaggtt chr16:3150425-3150925 + 60 4.43e-18 gccgcgtggc ctaatggataaggcgtctgattccggatcagaag attgagg chr17:19507972-19508472 + 19 1.61e-14 gacctcgtgg cgcaatggtagcgcgtctgactccagatcagaag gttgcgtgtt chr17:39154304-39154804 - 15 1.05e-13 GGGGGTATAG CTCAGTGGTAGAGCATTTGACTGCAGATCAAGAG GTCCCCGGTT chr17:68019700-68020200 - 25 3.63e-13 ACCCAGTGGC CTAATGGATAAGGCATCAGCCTCCGGAGCTGGGG ATTGTGGGTT chr16:14285666-14286166 + 37 3.93e-13 ggcgcggtgg ccaagtggtaaggcgtcggtctcgtaaaccgaag atcacgggtt chr17:8120687-8121187 + 49 1.37e-12 gctctgtggc gcaatggatagcgcattggacttctagtgacgaa tagagcaatt chr16:87383807-87384307 - 43 3.45e-12 CCTCGTTAGC GCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAG GTCGTGAGTT chr17:49192287-49192787 + 52 1.85e-11 gtcccatggt gtaatggttagcactctggactttgaatccagcg atccgagttc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:89334829-89335329 5.1e-20 54_[+3]_12 chr16:3150425-3150925 4.4e-18 59_[+3]_7 chr17:19507972-19508472 1.6e-14 18_[+3]_48 chr17:39154304-39154804 1.1e-13 14_[-3]_52 chr17:68019700-68020200 3.6e-13 24_[-3]_42 chr16:14285666-14286166 3.9e-13 36_[+3]_30 chr17:8120687-8121187 1.4e-12 48_[+3]_18 chr16:87383807-87384307 3.5e-12 42_[-3]_24 chr17:49192287-49192787 1.8e-11 51_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG width=34 seqs=9 chr15:89334829-89335329 ( 55) CTAATGGATAAGGCGTCTGACTTCGGATCAGAAG 1 chr16:3150425-3150925 ( 60) CTAATGGATAAGGCGTCTGATTCCGGATCAGAAG 1 chr17:19507972-19508472 ( 19) CGCAATGGTAGCGCGTCTGACTCCAGATCAGAAG 1 chr17:39154304-39154804 ( 15) CTCAGTGGTAGAGCATTTGACTGCAGATCAAGAG 1 chr17:68019700-68020200 ( 25) CTAATGGATAAGGCATCAGCCTCCGGAGCTGGGG 1 chr16:14285666-14286166 ( 37) CCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAG 1 chr17:8120687-8121187 ( 49) GCAATGGATAGCGCATTGGACTTCTAGTGACGAA 1 chr16:87383807-87384307 ( 43) GCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAG 1 chr17:49192287-49192787 ( 52) GTAATGGTTAGCACTCTGGACTTTGAATCCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 34 n= 40200 bayes= 12.9728 E= 2.6e-014 -982 107 7 -982 -982 7 -151 161 209 -51 -982 -982 228 -982 -151 -982 -71 -982 -51 187 -71 -982 81 87 -982 -982 165 -982 128 -982 48 -71 -982 -151 -982 228 245 -982 -982 -982 128 -982 81 -982 -71 48 48 -982 -71 -982 148 -982 -982 165 -982 -982 87 -982 81 -71 -982 -151 -982 228 -982 107 -982 87 29 -982 7 128 -982 -982 165 -982 187 -151 -982 29 -982 148 -982 -71 -982 -982 -982 245 -982 81 -151 87 -71 107 -151 -71 29 -982 48 87 128 -982 81 -982 228 -982 -151 -982 -71 -982 -151 209 -982 148 -151 -982 161 -51 -982 29 29 -151 107 -982 161 -982 48 -982 209 -151 -151 -982 -71 -982 148 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 34 nsites= 9 E= 2.6e-014 0.000000 0.666667 0.333333 0.000000 0.000000 0.333333 0.111111 0.555556 0.777778 0.222222 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.111111 0.000000 0.222222 0.666667 0.111111 0.000000 0.555556 0.333333 0.000000 0.000000 1.000000 0.000000 0.444444 0.000000 0.444444 0.111111 0.000000 0.111111 0.000000 0.888889 1.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.555556 0.000000 0.111111 0.444444 0.444444 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.555556 0.111111 0.000000 0.111111 0.000000 0.888889 0.000000 0.666667 0.000000 0.333333 0.222222 0.000000 0.333333 0.444444 0.000000 0.000000 1.000000 0.000000 0.666667 0.111111 0.000000 0.222222 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.555556 0.111111 0.333333 0.111111 0.666667 0.111111 0.111111 0.222222 0.000000 0.444444 0.333333 0.444444 0.000000 0.555556 0.000000 0.888889 0.000000 0.111111 0.000000 0.111111 0.000000 0.111111 0.777778 0.000000 0.888889 0.111111 0.000000 0.555556 0.222222 0.000000 0.222222 0.222222 0.111111 0.666667 0.000000 0.555556 0.000000 0.444444 0.000000 0.777778 0.111111 0.111111 0.000000 0.111111 0.000000 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYAATKGRTARSGCRTYDGACTYCDRATCAGRAG MEME-3 regular expression -------------------------------------------------------------------------------- [CG][TC][AC]A[TG][GT]G[AG]TA[GA][CG]GC[GA]T[CT][TGA]G[AT]CT[CT]C[GTA][GA]ATC[ACT][GA][AG]AG -------------------------------------------------------------------------------- Time 991.96 secs. ******************************************************************************** ******************************************************************************** MOTIF RVASAAAGGTTCCGG MEME-4 width = 15 sites = 38 llr = 437 E-value = 3.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 33716773::::::: pos.-specific C 241413:11::aa:2 probability G 53152:269::::a7 matrix T :1111:1::aa:::: bits 2.5 ** 2.2 ** 2.0 ** 1.7 *** Relative 1.5 * ***** Entropy 1.2 * ***** (16.6 bits) 1.0 ** ****** 0.7 * ********** 0.5 * * *********** 0.2 * ************* 0.0 --------------- Multilevel GCAGAAAGGTTCCGG consensus AG CGC A C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr16:67872796-67873296 - 19 1.09e-09 CAGGGCCGGA GAAGAAAGGTTCCGG GCTGGGGGCG chr4:4541823-4542323 + 67 1.09e-09 GGCGACGCGA GAAGAAAGGTTCCGG CCTGCGCCCT chr6:157323317-157323817 + 47 3.37e-08 ACCAGGCGGA GGAGAAAGGTTCCGC TACCGCCTCC chr18:35972355-35972855 - 32 6.22e-08 GGCACCGTAG GCAGACAGGTTCCGG TTTCCTTCGC chr6:99568462-99568962 + 75 1.27e-07 CCGTTCCTAT CGACAAAAGTTCCGG CCCGCGGTAG chr20:1118281-1118781 - 42 2.91e-07 CGAGCGCAGC ACTGAAAGGTTCCGC CAGGGAGTGC chr15:75368396-75368896 + 51 3.34e-07 CACGGCAGGA AACCAAAGGTTCCGG CGTCCAGAGG chr1:205211489-205211989 - 28 4.28e-07 TGGATAGTGG AGAGAAAGGTTCCGA TAGCGGCGCA chr3:51538400-51538900 - 24 4.28e-07 CGCGCCGCGG AGAGGAAAGTTCCGC TGAGAGCCGA chr7:128343680-128344180 + 74 4.95e-07 TCGGGAGGGG GATAAAAGGTTCCGG AATGAAAAAA chr1:205122038-205122538 + 65 4.95e-07 TCAGACTCCG CAGGAAAGGTTCCGG ACAAGTCCTG chr16:690211-690711 + 70 6.34e-07 TCGCCCGACA CCACGAAAGTTCCGG GTCAGGGAGC chr19:55634682-55635182 - 19 6.34e-07 CGCACCCACA AGAGAAAGGTTCCTG CGTCGCGCAC chr19:49580436-49580936 + 80 7.14e-07 GTGAGTAGCT AATCGAAAGTTCCGG ATATTG chr5:177086854-177087354 - 29 7.98e-07 CAGCCCGGGC CCACAAGGGTTCCGG CTCACCTCGA chr15:74615455-74615955 - 11 8.91e-07 CCGCGGCCTA GGAGACTAGTTCCGG GAGGGCCGAG chr1:212791591-212792091 + 71 9.97e-07 GGACGCTGCA GCTGAAACGTTCCGG CTCCGGCTCT chr8:144409095-144409595 + 65 9.97e-07 CAGAAGCTGG GCGGGAAGGTTCCGG GCTTCTGCGC chr1:37989826-37990326 + 38 1.35e-06 GCATCAGGCT GCACCAAAGTTCCGC GAGTGCCGGA chr1:179882492-179882992 + 69 1.86e-06 ACGAACCCGG CTAGAAGAGTTCCGG TCCGATTCTG chr12:123601808-12360230 - 16 2.06e-06 CTTCGCTGGA GCAGCAGAGTTCCGG AGCGCGGCGA chr15:68277424-68277924 - 35 2.06e-06 CGGGCCCGGT AGAGAAAGGTTCTGC TGCGCGTAGT chr22:24555566-24556066 - 78 2.80e-06 GGGCACCA GTACGATAGTTCCGG CACCGGAAAA chr21:28992644-28993144 + 14 3.06e-06 GACACGTCCG GGACACAACTTCCGG CTTCTGGCGG chr1:163321555-163322055 + 70 3.68e-06 CCAGCTCCGC GAGCAATGGTTCCGC CCTGCGCCCT chr17:81636899-81637399 + 37 5.21e-06 GCGAGGCCGG GAAACCAGGTTCCGG CCCCACCAAC chr16:12803381-12803881 + 71 5.68e-06 AGGTTCCCCC GGCGGAAGGTTCCGC AGCCCCAGAG chr6:27388740-27389240 + 34 6.18e-06 CAAGCCCAGC GCACTCAGGTTCCGC TCCAAGTGCG chr9:133030677-133031177 - 44 6.18e-06 TTGTTCCGCG AAGGAATCGTTCCGG GCTCCCTCAC chr12:68686719-68687219 + 41 6.18e-06 TGTTTTAGGG ACAGACTGCTTCCGG GTCGAAGGGC chr19:2739966-2740466 + 75 6.71e-06 CCGGATTGGC GAGGAACGGTTCCGG CAGGGTTGGG chr19:2462912-2463412 - 29 7.92e-06 GGGCTCCTCC AGATCCAGGTTCCGG AATCCGGGCT chr17:44014751-44015251 + 63 7.92e-06 CGGGGATGGG ACACGCAGCTTCCGG GTCAAGCGCT chr12:116910689-11691118 - 29 1.17e-05 TGCCGCCGCC GCTCTAGGGTTCCGG GTGGGCGTCC chr17:51153300-51153800 + 59 1.57e-05 GCGGATCTGC GCAGAAGCGTTCCGT GCGTGCAAGT chr19:39445317-39445817 - 3 1.81e-05 ACCTCGCCTA ACACGAGATTTCCGG GG chr6:35259421-35259921 + 25 2.53e-05 CCGGTATTTT CTATACGGGTTCCGG GGCCCGGTAG chr12:109052306-10905280 + 72 2.53e-05 CTGGGACTGC GGCCGCAGGTTCCGC TGTCTCGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:67872796-67873296 1.1e-09 18_[-4]_67 chr4:4541823-4542323 1.1e-09 66_[+4]_19 chr6:157323317-157323817 3.4e-08 46_[+4]_39 chr18:35972355-35972855 6.2e-08 31_[-4]_54 chr6:99568462-99568962 1.3e-07 74_[+4]_11 chr20:1118281-1118781 2.9e-07 41_[-4]_44 chr15:75368396-75368896 3.3e-07 50_[+4]_35 chr1:205211489-205211989 4.3e-07 27_[-4]_58 chr3:51538400-51538900 4.3e-07 23_[-4]_62 chr7:128343680-128344180 5e-07 73_[+4]_12 chr1:205122038-205122538 5e-07 64_[+4]_21 chr16:690211-690711 6.3e-07 69_[+4]_16 chr19:55634682-55635182 6.3e-07 18_[-4]_67 chr19:49580436-49580936 7.1e-07 79_[+4]_6 chr5:177086854-177087354 8e-07 28_[-4]_57 chr15:74615455-74615955 8.9e-07 10_[-4]_75 chr1:212791591-212792091 1e-06 70_[+4]_15 chr8:144409095-144409595 1e-06 64_[+4]_21 chr1:37989826-37990326 1.4e-06 37_[+4]_48 chr1:179882492-179882992 1.9e-06 68_[+4]_17 chr12:123601808-12360230 2.1e-06 15_[-4]_70 chr15:68277424-68277924 2.1e-06 34_[-4]_51 chr22:24555566-24556066 2.8e-06 77_[-4]_8 chr21:28992644-28993144 3.1e-06 13_[+4]_72 chr1:163321555-163322055 3.7e-06 69_[+4]_16 chr17:81636899-81637399 5.2e-06 36_[+4]_49 chr16:12803381-12803881 5.7e-06 70_[+4]_15 chr6:27388740-27389240 6.2e-06 33_[+4]_52 chr9:133030677-133031177 6.2e-06 43_[-4]_42 chr12:68686719-68687219 6.2e-06 40_[+4]_45 chr19:2739966-2740466 6.7e-06 74_[+4]_11 chr19:2462912-2463412 7.9e-06 28_[-4]_57 chr17:44014751-44015251 7.9e-06 62_[+4]_23 chr12:116910689-11691118 1.2e-05 28_[-4]_57 chr17:51153300-51153800 1.6e-05 58_[+4]_27 chr19:39445317-39445817 1.8e-05 2_[-4]_83 chr6:35259421-35259921 2.5e-05 24_[+4]_61 chr12:109052306-10905280 2.5e-05 71_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RVASAAAGGTTCCGG width=15 seqs=38 chr16:67872796-67873296 ( 19) GAAGAAAGGTTCCGG 1 chr4:4541823-4542323 ( 67) GAAGAAAGGTTCCGG 1 chr6:157323317-157323817 ( 47) GGAGAAAGGTTCCGC 1 chr18:35972355-35972855 ( 32) GCAGACAGGTTCCGG 1 chr6:99568462-99568962 ( 75) CGACAAAAGTTCCGG 1 chr20:1118281-1118781 ( 42) ACTGAAAGGTTCCGC 1 chr15:75368396-75368896 ( 51) AACCAAAGGTTCCGG 1 chr1:205211489-205211989 ( 28) AGAGAAAGGTTCCGA 1 chr3:51538400-51538900 ( 24) AGAGGAAAGTTCCGC 1 chr7:128343680-128344180 ( 74) GATAAAAGGTTCCGG 1 chr1:205122038-205122538 ( 65) CAGGAAAGGTTCCGG 1 chr16:690211-690711 ( 70) CCACGAAAGTTCCGG 1 chr19:55634682-55635182 ( 19) AGAGAAAGGTTCCTG 1 chr19:49580436-49580936 ( 80) AATCGAAAGTTCCGG 1 chr5:177086854-177087354 ( 29) CCACAAGGGTTCCGG 1 chr15:74615455-74615955 ( 11) GGAGACTAGTTCCGG 1 chr1:212791591-212792091 ( 71) GCTGAAACGTTCCGG 1 chr8:144409095-144409595 ( 65) GCGGGAAGGTTCCGG 1 chr1:37989826-37990326 ( 38) GCACCAAAGTTCCGC 1 chr1:179882492-179882992 ( 69) CTAGAAGAGTTCCGG 1 chr12:123601808-12360230 ( 16) GCAGCAGAGTTCCGG 1 chr15:68277424-68277924 ( 35) AGAGAAAGGTTCTGC 1 chr22:24555566-24556066 ( 78) GTACGATAGTTCCGG 1 chr21:28992644-28993144 ( 14) GGACACAACTTCCGG 1 chr1:163321555-163322055 ( 70) GAGCAATGGTTCCGC 1 chr17:81636899-81637399 ( 37) GAAACCAGGTTCCGG 1 chr16:12803381-12803881 ( 71) GGCGGAAGGTTCCGC 1 chr6:27388740-27389240 ( 34) GCACTCAGGTTCCGC 1 chr9:133030677-133031177 ( 44) AAGGAATCGTTCCGG 1 chr12:68686719-68687219 ( 41) ACAGACTGCTTCCGG 1 chr19:2739966-2740466 ( 75) GAGGAACGGTTCCGG 1 chr19:2462912-2463412 ( 29) AGATCCAGGTTCCGG 1 chr17:44014751-44015251 ( 63) ACACGCAGCTTCCGG 1 chr12:116910689-11691118 ( 29) GCTCTAGGGTTCCGG 1 chr17:51153300-51153800 ( 59) GCAGAAGCGTTCCGT 1 chr19:39445317-39445817 ( 3) ACACGAGATTTCCGG 1 chr6:35259421-35259921 ( 25) CTATACGGGTTCCGG 1 chr12:109052306-10905280 ( 72) GGCCGCAGGTTCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.304 E= 3.5e-010 79 -101 73 -1189 53 21 -13 -121 185 -201 -127 -47 -179 21 73 -179 173 -159 -42 -179 201 -27 -1189 -1189 185 -359 -79 -47 67 -201 99 -1189 -1189 -201 149 -279 -1189 -1189 -1189 246 -1189 -1189 -1189 246 -1189 165 -1189 -1189 -1189 162 -1189 -279 -1189 -1189 162 -279 -279 -42 116 -279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 38 E= 3.5e-010 0.315789 0.157895 0.526316 0.000000 0.263158 0.368421 0.289474 0.078947 0.657895 0.078947 0.131579 0.131579 0.052632 0.368421 0.526316 0.052632 0.605263 0.105263 0.236842 0.052632 0.736842 0.263158 0.000000 0.000000 0.657895 0.026316 0.184211 0.131579 0.289474 0.078947 0.631579 0.000000 0.000000 0.078947 0.894737 0.026316 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.973684 0.000000 0.026316 0.000000 0.000000 0.973684 0.026316 0.026316 0.236842 0.710526 0.026316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVASAAAGGTTCCGG MEME-4 regular expression -------------------------------------------------------------------------------- [GA][CGA]A[GC][AG][AC]A[GA]GTTCCG[GC] -------------------------------------------------------------------------------- Time 1266.43 secs. ******************************************************************************** ******************************************************************************** MOTIF YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 width = 31 sites = 48 llr = 608 E-value = 3.2e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 Description -------------------------------------------------------------------------------- Simplified A :427:51532:72324322635162316234 pos.-specific C 4363717353937534437252645373546 probability G 211:1111:11:::12:1::1:3:1:1::1: matrix T 411:23:124::1141341113::241133: bits 2.5 2.2 2.0 1.7 Relative 1.5 * * Entropy 1.2 * ** * (18.3 bits) 1.0 * ** * * * * 0.7 ** ** * ** * * * * 0.5 ******* ***** ** *** **** * 0.2 ******************************* 0.0 ------------------------------- Multilevel TACACACACTCACCTCCTCACACACTCACCC consensus CCACTT CAC CAACAAC CATGCTC CTAA sequence A A T C A AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr17:40476123-40476623 - 59 3.46e-13 CACACACACA CACACACACACACACACACACACACACACAC ACACACACAC chr21:44810770-44811270 + 31 3.61e-10 cacccacaca tgcacacacccacatatgcacacacgcacac acccacatac chr5:180594705-180595205 - 15 5.00e-10 CACCCACACA TACCCTCACACACCCTCACACACACCCATAC CCTCTCACTC chr9:130299588-130300088 + 26 1.09e-09 cattcatgca tgcattgactcacctattcatccatccaccc acccattcac chr1:245464285-245464785 - 2 1.48e-09 GTGCCACACA TCCACACATGCACACGCCCACACACACCCAC G chr1:152392954-152393454 - 32 2.31e-09 TACACCACCT TACCCACAATCAATAAAAAATTCAGTCACAC CTTCACTTAA chr19:39411890-39412390 - 24 4.73e-09 TCAGTTTTTA TAAACTTACACATCTAATAAACCAACCAAAA CATCTACATC chr10:7378546-7379046 - 23 8.20e-09 CCACCCCACA GCCACACACACCCACACTCACACCACCCCAC AGCGACACAC chr21:6565242-6565742 + 31 9.38e-09 caccacacac tccacacactccacacactccacactccaca cactccacac chr6:82260165-82260665 + 18 9.38e-09 ACTTGAATTT GATATTCAACCACTTAACCTAAGACCCATTA CTTGAAGTTT chr17:21235862-21236362 + 68 1.59e-08 catccactga ttcacccactcatctgcccacccatccatcc ac chr9:85743215-85743715 - 21 1.59e-08 CTCTAAGTTC TTAATTACCGCAAAACATAAATCACTCACTC TTGTGGCAAA chr12:130765135-13076563 - 65 1.59e-08 CGACA TCAACACCATGACATCATTAACACCACATCA TTAACTCCAC chr13:113976072-11397657 + 67 3.82e-08 gcccacaaca cAGATTCAATCACCTCCCACCACACAGATTC AAT chr17:80980374-80980874 - 17 5.47e-08 CACTCACACA CTCATTCACTGACTCATTCTTTGACTCATCC GCCCATTCAC chr21:45814170-45814670 - 53 5.47e-08 CACTCACCAC TCACCACTCACCACTCATCACTCAGTCACCA CTCACCACTC chr8:142008278-142008778 + 63 7.77e-08 acacccacca tacagacatgcacacatgcccagacatacca cacccac chr16:89011703-89012203 + 64 9.77e-08 tatccatcca cccacacgtgcacctatccacccatctatcc atccac chr10:11283733-11284233 - 69 1.09e-07 T CATCCATCATCCACCCACCACACACTCATCC CTCATCCACT chrX:153226325-153226825 - 2 1.09e-07 ACTCTCCTCA TCCCTGACCACACCACCTCACTCCTTCATCA T chr20:33709993-33710493 + 7 2.90e-07 CCCCTT CCCCCACTCCCACCTCTACAATGAACCACGC CCTTTCCCCC chr6:169840095-169840595 + 10 3.57e-07 cacgcccac tccacaccatgcccactccacaccatgccca ctccacacca chr10:100650919-10065141 + 59 4.84e-07 cccaccacct tcaccactcccaccaccttccccactcccac cacctccacc chr17:16991216-16991716 + 7 9.54e-07 ccacag gcaccccacacagacattcacacaccccaca ggcacacccc chr17:1293387-1293887 - 4 1.15e-06 GCGACATCAT CAAACACAACCCACGACATCATCAAACTCAA CCC chr12:132305298-13230579 + 14 1.26e-06 CCCTCACCCG GGCACAGCCTCACCCGGGCACACCCTCACCC GGGCACACCC chr7:44306790-44307290 - 66 1.26e-06 CTCA GACCCTCCTCCCCCTGCTCAGACCCTCCTCC CCCTGCTCAC chr19:4723780-4724280 + 29 1.51e-06 CTTGGTATCA CTCAGTCAAACCCATGATCCCCCACTATTAA GGATATCCGG chr1:3992023-3992523 - 21 1.81e-06 ACATCACCTC TCCATGACATCACCTCTCCCATGACATCATC TCCCCTTTGA chr17:993480-993980 + 56 1.98e-06 CACCTCGCAT AATCCACCCTCACATAATCCACCCTCACATA ATCCACACTC chr17:26603648-26604148 + 32 1.98e-06 gatttcgttg gaaacggaatcatcttcacataaaaactata cagatgcatt chr11:69376959-69377459 + 41 2.80e-06 CACCCAGGAA TGCCCACGCCCACCTGTGAACGCACACACCC ACCCGTGAAC chr17:78558302-78558802 - 27 4.24e-06 ACAATGATGT CATACACATGCAATGATGATGTCATCCACCC ATGAGGGTGA chr20:18587663-18588163 - 6 4.24e-06 TCTCGGCCTG GCGATAGGCCCACCCACTCATAGATTGACTC CGCCT chr15:65792144-65792644 - 65 4.24e-06 GGCGA CTTAGTCCCGCCCACCTTCACCGCCCCATTA TCAGTTTGGC chr12:132303742-13230424 + 2 4.60e-06 G GGCACACCCTCACCTGGGCACAGCCTCACCG GGGCACACCC chr19:34134364-34134864 - 8 4.60e-06 TGACCCGCAA AGCACCCAACCACCACCTTAACGCTACTTCC CAGCCTG chr1:232732244-232732744 - 41 4.60e-06 ACAACTATGA GTCATTCCTGCCAAAAAACAGAAATTTAATC TGATAAATCT chr21:35578287-35578787 + 35 4.60e-06 AAGAATGTCT CACACCAATACAAACCCAATTAACGTCAACA AAATCCTGCA chr17:39461164-39461664 - 15 5.40e-06 TGCTTCGCTT TCACCTCATTCCCCTGCTTATCAAACAACGC GAGATCAGGT chr10:132752275-13275277 - 1 6.84e-06 CACGCCCCTC CACACTGCACCCCTTCCACTCTGCACCCCTC chr5:38827496-38827996 - 67 7.38e-06 ACA TTTACTCCACCACAGTCTATAAACCACAAGC CATAAACAGT chr1:225425176-225425676 - 65 8.60e-06 AAGCC CAAACCCATTCATTACCCCAGTGATGCCCAA TCTCAGGTAG chr19:8922528-8923028 - 38 9.27e-06 CCACTGATTT TAGCCAAGCCCACCTCACCCCACCCAGCCTA CTGATGCCAG chr17:16380868-16381368 - 40 9.98e-06 CACGTCCACC CACAGGGACACAAACAAGCTCACCCAACAAA GCCAACCGCC chr16:3189374-3189874 + 25 1.07e-05 GATGCTAGGA CGCCCACAAAGATAACCTTAATGCGTAAATC GTGTggctcg chr6:169840294-169840794 + 69 1.24e-05 ccatgccgcg cccatgccacgcccacaccacaccatgccca c chr17:74514093-74514593 - 61 2.83e-05 ATCACCCAT CACATGACATCACCCATCACATGATCGTCGA TCACATGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:40476123-40476623 3.5e-13 58_[-5]_11 chr21:44810770-44811270 3.6e-10 30_[+5]_39 chr5:180594705-180595205 5e-10 14_[-5]_55 chr9:130299588-130300088 1.1e-09 25_[+5]_44 chr1:245464285-245464785 1.5e-09 1_[-5]_68 chr1:152392954-152393454 2.3e-09 31_[-5]_38 chr19:39411890-39412390 4.7e-09 23_[-5]_46 chr10:7378546-7379046 8.2e-09 22_[-5]_47 chr21:6565242-6565742 9.4e-09 30_[+5]_39 chr6:82260165-82260665 9.4e-09 17_[+5]_52 chr17:21235862-21236362 1.6e-08 67_[+5]_2 chr9:85743215-85743715 1.6e-08 20_[-5]_49 chr12:130765135-13076563 1.6e-08 64_[-5]_5 chr13:113976072-11397657 3.8e-08 66_[+5]_3 chr17:80980374-80980874 5.5e-08 16_[-5]_53 chr21:45814170-45814670 5.5e-08 52_[-5]_17 chr8:142008278-142008778 7.8e-08 62_[+5]_7 chr16:89011703-89012203 9.8e-08 63_[+5]_6 chr10:11283733-11284233 1.1e-07 68_[-5]_1 chrX:153226325-153226825 1.1e-07 1_[-5]_68 chr20:33709993-33710493 2.9e-07 6_[+5]_63 chr6:169840095-169840595 3.6e-07 9_[+5]_60 chr10:100650919-10065141 4.8e-07 58_[+5]_11 chr17:16991216-16991716 9.5e-07 6_[+5]_63 chr17:1293387-1293887 1.2e-06 3_[-5]_66 chr12:132305298-13230579 1.3e-06 13_[+5]_56 chr7:44306790-44307290 1.3e-06 65_[-5]_4 chr19:4723780-4724280 1.5e-06 28_[+5]_41 chr1:3992023-3992523 1.8e-06 20_[-5]_49 chr17:993480-993980 2e-06 55_[+5]_14 chr17:26603648-26604148 2e-06 31_[+5]_38 chr11:69376959-69377459 2.8e-06 40_[+5]_29 chr17:78558302-78558802 4.2e-06 26_[-5]_43 chr20:18587663-18588163 4.2e-06 5_[-5]_64 chr15:65792144-65792644 4.2e-06 64_[-5]_5 chr12:132303742-13230424 4.6e-06 1_[+5]_68 chr19:34134364-34134864 4.6e-06 7_[-5]_62 chr1:232732244-232732744 4.6e-06 40_[-5]_29 chr21:35578287-35578787 4.6e-06 34_[+5]_35 chr17:39461164-39461664 5.4e-06 14_[-5]_55 chr10:132752275-13275277 6.8e-06 [-5]_69 chr5:38827496-38827996 7.4e-06 66_[-5]_3 chr1:225425176-225425676 8.6e-06 64_[-5]_5 chr19:8922528-8923028 9.3e-06 37_[-5]_32 chr17:16380868-16381368 1e-05 39_[-5]_30 chr16:3189374-3189874 1.1e-05 24_[+5]_45 chr6:169840294-169840794 1.2e-05 68_[+5]_1 chr17:74514093-74514593 2.8e-05 60_[-5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YMCACWCMMHCACMHMHYCACWCMCHCAYHM width=31 seqs=48 chr17:40476123-40476623 ( 59) CACACACACACACACACACACACACACACAC 1 chr21:44810770-44811270 ( 31) TGCACACACCCACATATGCACACACGCACAC 1 chr5:180594705-180595205 ( 15) TACCCTCACACACCCTCACACACACCCATAC 1 chr9:130299588-130300088 ( 26) TGCATTGACTCACCTATTCATCCATCCACCC 1 chr1:245464285-245464785 ( 2) TCCACACATGCACACGCCCACACACACCCAC 1 chr1:152392954-152393454 ( 32) TACCCACAATCAATAAAAAATTCAGTCACAC 1 chr19:39411890-39412390 ( 24) TAAACTTACACATCTAATAAACCAACCAAAA 1 chr10:7378546-7379046 ( 23) GCCACACACACCCACACTCACACCACCCCAC 1 chr21:6565242-6565742 ( 31) TCCACACACTCCACACACTCCACACTCCACA 1 chr6:82260165-82260665 ( 18) GATATTCAACCACTTAACCTAAGACCCATTA 1 chr17:21235862-21236362 ( 68) TTCACCCACTCATCTGCCCACCCATCCATCC 1 chr9:85743215-85743715 ( 21) TTAATTACCGCAAAACATAAATCACTCACTC 1 chr12:130765135-13076563 ( 65) TCAACACCATGACATCATTAACACCACATCA 1 chr13:113976072-11397657 ( 67) CAGATTCAATCACCTCCCACCACACAGATTC 1 chr17:80980374-80980874 ( 17) CTCATTCACTGACTCATTCTTTGACTCATCC 1 chr21:45814170-45814670 ( 53) TCACCACTCACCACTCATCACTCAGTCACCA 1 chr8:142008278-142008778 ( 63) TACAGACATGCACACATGCCCAGACATACCA 1 chr16:89011703-89012203 ( 64) CCCACACGTGCACCTATCCACCCATCTATCC 1 chr10:11283733-11284233 ( 69) CATCCATCATCCACCCACCACACACTCATCC 1 chrX:153226325-153226825 ( 2) TCCCTGACCACACCACCTCACTCCTTCATCA 1 chr20:33709993-33710493 ( 7) CCCCCACTCCCACCTCTACAATGAACCACGC 1 chr6:169840095-169840595 ( 10) TCCACACCATGCCCACTCCACACCATGCCCA 1 chr10:100650919-10065141 ( 59) TCACCACTCCCACCACCTTCCCCACTCCCAC 1 chr17:16991216-16991716 ( 7) GCACCCCACACAGACATTCACACACCCCACA 1 chr17:1293387-1293887 ( 4) CAAACACAACCCACGACATCATCAAACTCAA 1 chr12:132305298-13230579 ( 14) GGCACAGCCTCACCCGGGCACACCCTCACCC 1 chr7:44306790-44307290 ( 66) GACCCTCCTCCCCCTGCTCAGACCCTCCTCC 1 chr19:4723780-4724280 ( 29) CTCAGTCAAACCCATGATCCCCCACTATTAA 1 chr1:3992023-3992523 ( 21) TCCATGACATCACCTCTCCCATGACATCATC 1 chr17:993480-993980 ( 56) AATCCACCCTCACATAATCCACCCTCACATA 1 chr17:26603648-26604148 ( 32) GAAACGGAATCATCTTCACATAAAAACTATA 1 chr11:69376959-69377459 ( 41) TGCCCACGCCCACCTGTGAACGCACACACCC 1 chr17:78558302-78558802 ( 27) CATACACATGCAATGATGATGTCATCCACCC 1 chr20:18587663-18588163 ( 6) GCGATAGGCCCACCCACTCATAGATTGACTC 1 chr15:65792144-65792644 ( 65) CTTAGTCCCGCCCACCTTCACCGCCCCATTA 1 chr12:132303742-13230424 ( 2) GGCACACCCTCACCTGGGCACAGCCTCACCG 1 chr19:34134364-34134864 ( 8) AGCACCCAACCACCACCTTAACGCTACTTCC 1 chr1:232732244-232732744 ( 41) GTCATTCCTGCCAAAAAACAGAAATTTAATC 1 chr21:35578287-35578787 ( 35) CACACCAATACAAACCCAATTAACGTCAACA 1 chr17:39461164-39461664 ( 15) TCACCTCATTCCCCTGCTTATCAAACAACGC 1 chr10:132752275-13275277 ( 1) CACACTGCACCCCTTCCACTCTGCACCCCTC 1 chr5:38827496-38827996 ( 67) TTTACTCCACCACAGTCTATAAACCACAAGC 1 chr1:225425176-225425676 ( 65) CAAACCCATTCATTACCCCAGTGATGCCCAA 1 chr19:8922528-8923028 ( 38) TAGCCAAGCCCACCTCACCCCACCCAGCCTA 1 chr17:16380868-16381368 ( 40) CACAGGGACACAAACAAGCTCACCCAACAAA 1 chr16:3189374-3189874 ( 25) CGCCCACAAAGATAACCTTAATGCGTAAATC 1 chr6:169840294-169840794 ( 69) CCCATGCCACGCCCACACCACACCATGCCCA 1 chr17:74514093-74514593 ( 61) CACATGACATCACCCATCACATGATCGTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 10.8719 E= 3.2e-015 -213 16 -76 119 112 -2 -112 -32 19 93 -234 -54 196 -12 -1223 -1223 -1223 111 -193 33 139 -161 -135 68 -54 116 -135 -213 151 7 -193 -154 87 59 -1223 4 33 -23 -112 96 -1223 150 -161 -1223 200 -23 -1223 -1223 19 107 -393 -81 87 77 -1223 -54 33 -12 -234 119 104 32 -93 -154 68 32 -293 57 4 -23 -112 112 4 107 -1223 -32 182 -61 -1223 -32 46 71 -193 -32 139 -47 -393 57 -54 93 -23 -1223 182 16 -1223 -1223 4 65 -193 33 57 -2 -293 104 -81 111 -135 -113 173 -12 -1223 -81 33 65 -1223 57 46 39 -193 46 119 82 -393 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 48 E= 3.2e-015 0.041667 0.354167 0.187500 0.416667 0.395833 0.312500 0.145833 0.145833 0.208333 0.604167 0.062500 0.125000 0.708333 0.291667 0.000000 0.000000 0.000000 0.687500 0.083333 0.229167 0.479167 0.104167 0.125000 0.291667 0.125000 0.708333 0.125000 0.041667 0.520833 0.333333 0.083333 0.062500 0.333333 0.479167 0.000000 0.187500 0.229167 0.270833 0.145833 0.354167 0.000000 0.895833 0.104167 0.000000 0.729167 0.270833 0.000000 0.000000 0.208333 0.666667 0.020833 0.104167 0.333333 0.541667 0.000000 0.125000 0.229167 0.291667 0.062500 0.416667 0.375000 0.395833 0.166667 0.062500 0.291667 0.395833 0.041667 0.270833 0.187500 0.270833 0.145833 0.395833 0.187500 0.666667 0.000000 0.145833 0.645833 0.208333 0.000000 0.145833 0.250000 0.520833 0.083333 0.145833 0.479167 0.229167 0.020833 0.270833 0.125000 0.604167 0.270833 0.000000 0.645833 0.354167 0.000000 0.000000 0.187500 0.500000 0.083333 0.229167 0.270833 0.312500 0.041667 0.375000 0.104167 0.687500 0.125000 0.083333 0.604167 0.291667 0.000000 0.104167 0.229167 0.500000 0.000000 0.270833 0.250000 0.416667 0.083333 0.250000 0.416667 0.562500 0.020833 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMCACWCMMHCACMHMHYCACWCMCHCAYHM MEME-5 regular expression -------------------------------------------------------------------------------- [TC][AC][CA][AC][CT][AT]C[AC][CA][TCA]C[AC][CA][CA][TCA][CA][CAT][TC]C[AC][CA][ATC][CG][AC][CT][TCA]C[AC][CTA][CAT][CA] -------------------------------------------------------------------------------- Time 1538.92 secs. ******************************************************************************** ******************************************************************************** MOTIF YYCYYKCCBBYCYYYYYYBCYS MEME-6 width = 22 sites = 116 llr = 1056 E-value = 1.7e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 Description -------------------------------------------------------------------------------- Simplified A 1::::2:1::2:1::::1::1: pos.-specific C 44766:a635465546644655 probability G 1:1:15:133:2112:::2123 matrix T 462434:242423444454332 bits 2.5 2.2 2.0 1.7 * Relative 1.5 * Entropy 1.2 * * (13.1 bits) 1.0 * * * * 0.7 * * * * *** 0.5 ******* ********** 0.2 ********************** 0.0 ---------------------- Multilevel CTCCCGCCTCCCCCTCCTCCCC consensus TC TTT GGTTTTCTTCTTTG sequence CT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:4081557-4082057 + 54 2.68e-08 tcctccctcc tcctttcctctcctccctcctc ccccctgctc chr19:49580436-49580936 + 41 3.44e-08 CTTGCTCAAG TCCTCTCTTCTCTTTCTCTCTC CGGAAACGTG chr17:7836726-7837226 + 44 1.34e-07 CCCGTGCCAT CTCTTTCCCCTCTCCCTTCCCG TGGTCTTAGC chr12:122752517-12275301 + 31 2.46e-07 GCTCCGCAAT TTTTCTCCGCCCCCGTCTTCCG GCTTCTCGCG chr1:26695358-26695858 + 50 3.61e-07 CCGCGGCTTG TTCTCTCCCCTCCTCCTTTGTG AAGGGAAGGG chr19:38636832-38637332 + 54 3.61e-07 CATGGCGGGG TTTCCGCCTCCTTTTTCCCCTG CTTCGACTTC chr21:35578287-35578787 - 2 3.61e-07 GACATTCTTG CTCCTGCCTCATTTGTCTTCTG A chr12:6970445-6970945 - 13 6.20e-07 AGGGAGCGCA CTTCCGCTGCCCTTTCTTTCGC CAGCCTTACG chr19:6161239-6161739 - 6 8.73e-07 CCCACCCACT TCCTTTCCTCACCTTTCACTTC CTTTG chr16:86563761-86564261 + 21 8.73e-07 GCCGGGCGGT CTTTTTCTTTTTCCTTTTCTCG TAGTAGTTCC chr10:93702412-93702912 - 61 1.21e-06 CGGGCCGTTT CTCCCGCTGCCCTTGTTTCCCG GAGCTGTTCT chr5:138338141-138338641 + 31 1.21e-06 ccctccctcc ttccctctttcccctcccCCAG CCCGACCGCC chr17:45148353-45148853 - 17 1.42e-06 GCTCAGTTCT CCTCCGCCTCCTCCTCTTTTCC TCCCTCCCTC chr19:3721358-3721858 - 78 1.66e-06 T TTCTCTCCCCACCTCCCATCAC AGGAGCCAGG chr11:47578725-47579225 + 1 1.66e-06 . TTCTCACCTGCGTTCCCTCCTT TCATCCCGGA chr19:45092783-45093283 + 16 1.94e-06 TCCGTGGCCC TTCCTGCCCTTTGTTTCTCTCT TCATGTCACC chr5:96935764-96936264 + 3 1.94e-06 CC CTCTTGCTTCCCTCGCTCTTTC TGCAGCTGCC chr20:45891007-45891507 - 59 1.94e-06 ACGTGACAGT CTTCCTCCCGCCCCTTCTTTGG TCCCTACGGA chr12:132161226-13216172 + 33 2.25e-06 TCAGCTCCTC CTCCCTCAGCTCCTCCTCCCTC AGCTCCTCAG chr10:47553293-47553793 - 62 2.60e-06 GGTCCCTTTT TTTCTGCCTTTTTGTTTCCCTC CGGCGAGTCG chr10:132965075-13296557 + 47 3.01e-06 TGGCGTTACC TTCCCTCCGTTCCCACTTCTCC TCAACGGCGT chr11:94767906-94768406 - 3 3.47e-06 GGCGACAGCA TCCCTTCCTTTGTCCCCTGCCG GG chr22:39520180-39520680 - 67 3.98e-06 TGACCGTCTC CTCCCGCCCGCTCCCTTCCCTC CCTCCCTTTG chr9:132944450-132944950 + 27 4.57e-06 GAAAAAGAGT CCCCCTCCGGACCTCCCCTCCT TCTCGAAAGG chr7:129054745-129055245 + 36 4.57e-06 GTTCCTGGCC TTTTTTCCGGTTTTTCCACTTG ATTCTAGACT chr1:40691464-40691964 - 17 4.57e-06 GCCGTTTGCA CCGTTTCCCCTTTTCCCTTCCC CCTCCCTTGG chr12:124914539-12491503 + 5 5.22e-06 CTTT TCCTCGCCTGTTCCGCTCTCTG GAAAGAAAAC chr19:40598041-40598541 - 4 5.22e-06 TCTTGCCGTC ATCCCTCCCGCCTTTTCTCCAG GTT chr22:37686122-37686622 - 79 5.96e-06 . ATCTCGCTTCTTCTTCTTGTTG CGGCCCATAG chr7:128343680-128344180 - 36 5.96e-06 CCGACCATGT TTTCCTCCGGTCTCTTTTGGGC AACGAGCACT chr1:36464174-36464674 - 24 5.96e-06 ACCTAATCCA TTCTCTCGGTCTTCGTCTGCTC CGGTATTGCA chr16:31179789-31180289 + 56 5.96e-06 GCGGAGTGCG TTCCTGCCTCCCCCTGCTCTTC CGCGTTTGGT chr17:42998035-42998535 + 69 5.96e-06 CGCCCTGCGT TTCCCTCATGAGCTTCTTCCGC CCGCAACACG chr5:140043080-140043580 + 47 5.96e-06 CGCCCACTTG CTCTCTCGCGCCCCCTCTGCCC CCGGACCGAG chr15:67254477-67254977 - 22 6.78e-06 AGAACGCCCT CTCCGGCCTGTCTCCCCCTCGC GCCGGCGGCC chr19:49496004-49496504 + 57 6.78e-06 CGTCTAGCAC TTCCCGCCCGTCAGTCCTTCAC AGTGCCCGAA chr17:7484043-7484543 - 47 6.78e-06 CCCCGCCCCT TCCTTTCCCGCCCTCCCTTGCG CTACGGGGCC chr1:155050363-155050863 + 4 7.70e-06 CCC TTCTTTCCCGCCTCGCTCCCGG GCTGGCGCTA chr8:10839745-10840245 - 28 7.70e-06 GCGGCCACCG CCCCCTCAGTCCCTCTTTCTCC CGTCACCTCC chr21:25607259-25607759 + 46 8.72e-06 GCGCGCAAGT CCTTCTCCGCCCTCCTCCCCCG GAAACCGAAC chr1:235504236-235504736 + 75 9.86e-06 CCCACCTTTT CTCCCACTCGCCCCGCCCTCTC CTCC chr5:176388746-176389246 - 76 1.11e-05 CTG GTCCTTCTCTACTTCCTTCCCT CCGACATCAC chr11:112961060-11296156 + 53 1.11e-05 CACAGTGAGG TTCTCACCCCCGCCCCCCGCTC CTCGCTCCCA chr1:32817164-32817664 - 41 1.11e-05 GCTCGACTCT CTGCTGCTCCTCACTTTTTCCG GCCGCTGCCG chr15:72230289-72230789 - 9 1.25e-05 CACGTCCGCT CCCCCGCATCCCCTTCCTCGCC TGGCGTGT chr8:143829110-143829610 + 23 1.25e-05 CCGCGCGCGC CTCCCACTCTTGCTCCTTCCGC TGTCTCGCGC chr19:49712302-49712802 - 22 1.25e-05 CCACACCCAC GTCCCTCTCCTCTTCTCCCTCG GACCACGCCC chr20:62407304-62407804 + 22 1.25e-05 GGCCGCGGGG CTCTCGCTTTCTGTTCCCTTTG CTGTATGGCG chr19:11482570-11483070 + 21 1.41e-05 CGCGCCTCGC TCCCCGCCCCTCTCTCTAGCGG CCCGCAGGAG chr15:73992083-73992583 - 72 1.41e-05 AAGCGGG CCCCGGCCGGCCTCCTCTTCCT GCGCCCGCGC chr17:82273324-82273824 + 73 1.41e-05 GCTGCTCCGG CCCCTACCGGTCCCGCTTGCCC TCTCCC chr19:43463556-43464056 - 17 1.41e-05 CCCACAGCTA ATCCCGCCCTTGTCCCTCTCCC TAGTCCACGG chr8:94719580-94720080 + 12 1.58e-05 CAGCGAAACG CTCCGGCCGCTCCCCTCTCCCA ACACTCTGGT chr20:63941643-63942143 - 45 1.58e-05 ATTCTGTGGC CTGTCGCTTTCCTCTTCCTGCC CCTGCATCAC chr19:4123922-4124422 - 6 1.58e-05 GTCCGCGATC TTGTGGCCGCCCCTCCCCTCCC CCTGC chr16:78099298-78099798 + 50 1.58e-05 CTCTTAGGCA CTTTCACCGCCTTCCTCTCCAG GCCCTGCCCC chr1:228165569-228166069 + 22 1.77e-05 CCTTGGGCCC TTCCCGCTGCCCCACTCTTGTC CAAGATGGCG chr20:58650940-58651440 - 57 1.97e-05 CCCCCCTGGC CCTCTTCCTGTCCGTCCCTCGC GAGTGCCCCC chr17:7717065-7717565 - 1 1.97e-05 GCCTGGAGCA CCCTTGCCCTCCTGCTCCTTCC chr5:139517888-139518388 - 69 1.97e-05 CACGGAGCAG CCGCCGCCTGCCTCTCTTGTCC TACTCTGGCG chr2:223957187-223957687 + 57 2.20e-05 ACTACTTTCG TTCCGTCTTCCATCGTTTTCTC TCGTGCAATG chr10:87862153-87862653 + 43 2.20e-05 GGGCTGCAGC TTCCTACCGTTCCGTACTTTCC ACTCAACCCG chr14:101947909-10194840 - 78 2.45e-05 G TTCTCACCTCTGCGTTCCGCGT GAATCTCGCT chr1:45521619-45522119 - 51 2.45e-05 CCCCGGAGAG CTCTTGCGCGTCTTGTTCTTGC CTGGTGTCGG chr19:6677824-6678324 - 4 2.45e-05 CCACGCCCCT TCCTGACCTGCCATTCTTCCCT CCA chr1:173714667-173715167 - 79 2.45e-05 . CTATTTCCTTTCCCTTCACCGG CCCATATCCA chr1:183471823-183472323 - 27 2.72e-05 CTTCTTATCA CTCCTGCCGATTTCCCTCTTCC TTTTTGCACG chr19:55643335-55643835 + 77 2.72e-05 CGCCCCAACC TTCCTTCCCTAGACCCTCTTCT CT chr12:68686719-68687219 + 2 2.72e-05 T TCTTCTCCCCTACCCCTTTTCT GTGGGTCTGT chr12:54359102-54359602 - 54 2.72e-05 TTCGCACGCT CTCTCTCTTTCGCTGTCTCTTA CAGGCAGATT chr1:30651335-30651835 + 40 3.02e-05 GATCACCTCC TCCCTGCCTGCCCACTCCCTCC TACCTCCTCC chr1:228109115-228109615 - 30 3.02e-05 ATATCTTCGT GTCTCACCGCCCACTCTTGCCT CTCCCTGCCA chr4:77075918-77076418 - 22 3.34e-05 GCCCGTCTCC TTTCGGCCGCACTTCTCTGTAC TTTCGTTGGA chr17:75012370-75012870 - 76 3.34e-05 TGC TTCCGGCGGGCGCTTCCTCCCC GCGGTCCGCA chr14:103921380-10392188 - 75 3.34e-05 CACC CTCTCCCCGCCCCTTCTTGCCT GCGACACCAG chr19:2945126-2945626 - 7 3.69e-05 GGGACTCCGT GCCCTTCCTCTCCTCCCCGCAC GAGGGG chr4:4541823-4542323 + 27 4.08e-05 TGAAGGACTG GTCCTGCCCCACACGCCTCCCC CCGGCAACGG chr2:47176394-47176894 + 34 4.08e-05 CCCCTCAAAC TCTTCTCGGGACCCCTTTCTTC ACAGTTATTT chr19:42325313-42325813 + 58 4.49e-05 GGCTGCTCGG CTCCCGCCCCCTCGCCCTCCCA CAGCGGGTCT chr9:128787006-128787506 + 29 4.49e-05 GTGGCTGTGT TTCCCGCCGGAGGCTTTTGCGC AGAGCCCCGC chr19:41859973-41860473 + 72 4.49e-05 GCCCGGGAAA CCCCGTCGTTCCCTTTCCCCTG GCTGGCA chr19:40690806-40691306 - 33 4.49e-05 AAAAAGTGCC TCGTCACCGCTCCTGCCCGCCC CCGCCGGGCT chr6:41532202-41532702 - 31 4.49e-05 TTCGCACACC CTCCTGCCCCCGCCTCACTCCC AGAGGCCACC chr19:35899516-35900016 - 12 4.49e-05 CCCCGCGCAA TCCCCACTTAACCCTTCCTCCG CCGGAACCCA chr19:12669253-12669753 + 44 4.94e-05 ACACCCGAGG CCCTCGCATTTCCGTTCCTCAT GACAGAGGCT chr19:41706753-41707253 + 22 5.43e-05 ctcacacgga ctctgtcagctcctccctgcag cctatcggcc chrX:21839345-21839845 - 58 5.43e-05 AGGAACCAAG CTACCGCCGGCTCCTTCCTTGC GGTGGCACGG chr6:159726799-159727299 + 48 5.96e-05 CCGGCGAGTA CTTCCACCTTCCCTTCCCGTGA TGCCCTGGGG chr15:72474004-72474504 - 65 5.96e-05 TCGCGCTGCG TCGTCGCGTCACTCCTCTTTGC GTCACTGCGC chr19:38335537-38336037 - 73 7.80e-05 GCACCA GTCCCGCCCCTCTTGCCCGGTC TCAAAATGGC chr19:41884053-41884553 - 27 7.80e-05 GACTCTACTC CTCCCGCCGGCCGCTCTAGCGC TGTACTGCGC chr17:7242762-7243262 - 12 8.51e-05 GCTGGCGTAG TCCCTACCTTTCCAACCTCCTC TCCAGTCCCT chr9:133030677-133031177 - 19 8.51e-05 GTTCCGGGCT CCCTCACCGCTCGCGTCATCCT AACTCCCCGG chr19:19192002-19192502 + 41 8.51e-05 GGGCCCGCCC TCCCCGCTCCTCAGTCTTTGCG GACAAGAAAG chr19:35775253-35775753 + 21 8.51e-05 CAGCGCCGCG TTCCCGCTGCCCCCCGCCCCCG TGGGGCGCGC chr6:82247155-82247655 + 74 8.51e-05 GGCCACAGAG TCCCCTCCCCACGGTCCCCCCG CGCCG chr19:39125700-39126200 - 22 9.27e-05 CACCGCAAGC CCCTGGCCGGACCCCTTATCCT ACCGGCTCGG chr16:21599269-21599769 - 25 9.27e-05 ACGCCGCTGC CCCCTGCACCAGTTTCCATCCG GAGCACTTAC chr19:38402923-38403423 - 31 9.27e-05 CCCTCCCACG CTTCCGCCTTCACCGCCTCCAT GAAAGTGTGG chr10:123008496-12300899 + 45 9.27e-05 TTAAATgccg tcgccgccgccgccgtcttcgt caccgtcaca chr15:74099992-74100492 + 46 1.01e-04 CCGGGAATTT CTTTTTCCGGTCCCGCCAGGTC AGCTGAGTCG chr1:228139905-228140405 - 73 1.01e-04 GCCCAT GTCTCACTCGTTCTTCCCCGCC CCTTAGGGAA chr19:39539784-39540284 + 4 1.01e-04 CGC CTCCCGCGGCCTACCTCCGCCT GCGGGACGTC chr16:636569-637069 - 65 1.10e-04 CCCGGAGGAC TTCCCGCGTCACAGTCTCTTGT CTCCGCGGGC chr7:139359453-139359953 - 10 1.10e-04 GAGGCGCCAA ACCTTACATTACATTCCCTCCC GGCTGTAGG chr19:40420981-40421481 + 31 1.10e-04 ACCGTCCAGC CCCCTGCGCCTCTCTCCATGCG CACCCGCAGT chr9:137241096-137241596 + 27 1.10e-04 TGCTGTTTGT CTACTTCCTCCTGCTTCCccgc cgccgccgcc chr1:227735074-227735574 - 40 1.19e-04 CCGAGGCTGG TCCTCACCGTTTCCGCTCCGGC GGAAGTGAGG chr1:241423807-241424307 + 46 1.19e-04 ctctggccac ttgccaccgttgtcgcccgccg ccgctgcagg chr16:22298269-22298769 - 18 1.29e-04 TGGGTTTGGT ATTCCTCCCTATTTTCATCCCT AAAGTAGGGA chr12:96035793-96036293 + 14 1.40e-04 TCAGAAGGCT TTCTTTCGTGCGGTtcctcgtt agtatagtgg chr5:5340267-5340767 + 62 1.40e-04 TGCATTTGTT TCCTCTCGGCATTACTCATCCC ACGATGGATG chr16:28974670-28975170 + 60 2.19e-04 CATCACGTGT ATTCCGCACGTCCCCTCCGCGC TGTGTGTCTA chr11:65919108-65919608 - 61 2.19e-04 GGTGCCGCCC GCTCCGCCCCCGCCGTTTCCCG CGGAGTCCTA chr10:72215765-72216265 + 56 2.19e-04 CACGCCGCCT TCGCCGCTGGCTCCGTCTGTTG GGGGGCGAAC chr19:38831573-38832073 + 2 6.41e-04 G CCGCCGCCTTCGTCTACTGCGT TCGGACGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:4081557-4082057 2.7e-08 53_[+6]_25 chr19:49580436-49580936 3.4e-08 40_[+6]_38 chr17:7836726-7837226 1.3e-07 43_[+6]_35 chr12:122752517-12275301 2.5e-07 30_[+6]_48 chr1:26695358-26695858 3.6e-07 49_[+6]_29 chr19:38636832-38637332 3.6e-07 53_[+6]_25 chr21:35578287-35578787 3.6e-07 1_[-6]_77 chr12:6970445-6970945 6.2e-07 12_[-6]_66 chr19:6161239-6161739 8.7e-07 5_[-6]_73 chr16:86563761-86564261 8.7e-07 20_[+6]_58 chr10:93702412-93702912 1.2e-06 60_[-6]_18 chr5:138338141-138338641 1.2e-06 30_[+6]_48 chr17:45148353-45148853 1.4e-06 16_[-6]_62 chr19:3721358-3721858 1.7e-06 77_[-6]_1 chr11:47578725-47579225 1.7e-06 [+6]_78 chr19:45092783-45093283 1.9e-06 15_[+6]_63 chr5:96935764-96936264 1.9e-06 2_[+6]_76 chr20:45891007-45891507 1.9e-06 58_[-6]_20 chr12:132161226-13216172 2.2e-06 32_[+6]_46 chr10:47553293-47553793 2.6e-06 61_[-6]_17 chr10:132965075-13296557 3e-06 46_[+6]_32 chr11:94767906-94768406 3.5e-06 2_[-6]_76 chr22:39520180-39520680 4e-06 66_[-6]_12 chr9:132944450-132944950 4.6e-06 26_[+6]_52 chr7:129054745-129055245 4.6e-06 35_[+6]_43 chr1:40691464-40691964 4.6e-06 16_[-6]_62 chr12:124914539-12491503 5.2e-06 4_[+6]_74 chr19:40598041-40598541 5.2e-06 3_[-6]_75 chr22:37686122-37686622 6e-06 78_[-6] chr7:128343680-128344180 6e-06 35_[-6]_43 chr1:36464174-36464674 6e-06 23_[-6]_55 chr16:31179789-31180289 6e-06 55_[+6]_23 chr17:42998035-42998535 6e-06 68_[+6]_10 chr5:140043080-140043580 6e-06 46_[+6]_32 chr15:67254477-67254977 6.8e-06 21_[-6]_57 chr19:49496004-49496504 6.8e-06 56_[+6]_22 chr17:7484043-7484543 6.8e-06 46_[-6]_32 chr1:155050363-155050863 7.7e-06 3_[+6]_75 chr8:10839745-10840245 7.7e-06 27_[-6]_51 chr21:25607259-25607759 8.7e-06 45_[+6]_33 chr1:235504236-235504736 9.9e-06 74_[+6]_4 chr5:176388746-176389246 1.1e-05 75_[-6]_3 chr11:112961060-11296156 1.1e-05 52_[+6]_26 chr1:32817164-32817664 1.1e-05 40_[-6]_38 chr15:72230289-72230789 1.3e-05 8_[-6]_70 chr8:143829110-143829610 1.3e-05 22_[+6]_56 chr19:49712302-49712802 1.3e-05 21_[-6]_57 chr20:62407304-62407804 1.3e-05 21_[+6]_57 chr19:11482570-11483070 1.4e-05 20_[+6]_58 chr15:73992083-73992583 1.4e-05 71_[-6]_7 chr17:82273324-82273824 1.4e-05 72_[+6]_6 chr19:43463556-43464056 1.4e-05 16_[-6]_62 chr8:94719580-94720080 1.6e-05 11_[+6]_67 chr20:63941643-63942143 1.6e-05 44_[-6]_34 chr19:4123922-4124422 1.6e-05 5_[-6]_73 chr16:78099298-78099798 1.6e-05 49_[+6]_29 chr1:228165569-228166069 1.8e-05 21_[+6]_57 chr20:58650940-58651440 2e-05 56_[-6]_22 chr17:7717065-7717565 2e-05 [-6]_78 chr5:139517888-139518388 2e-05 68_[-6]_10 chr2:223957187-223957687 2.2e-05 56_[+6]_22 chr10:87862153-87862653 2.2e-05 42_[+6]_36 chr14:101947909-10194840 2.4e-05 77_[-6]_1 chr1:45521619-45522119 2.4e-05 50_[-6]_28 chr19:6677824-6678324 2.4e-05 3_[-6]_75 chr1:173714667-173715167 2.4e-05 78_[-6] chr1:183471823-183472323 2.7e-05 26_[-6]_52 chr19:55643335-55643835 2.7e-05 76_[+6]_2 chr12:68686719-68687219 2.7e-05 1_[+6]_77 chr12:54359102-54359602 2.7e-05 53_[-6]_25 chr1:30651335-30651835 3e-05 39_[+6]_39 chr1:228109115-228109615 3e-05 29_[-6]_49 chr4:77075918-77076418 3.3e-05 21_[-6]_57 chr17:75012370-75012870 3.3e-05 75_[-6]_3 chr14:103921380-10392188 3.3e-05 74_[-6]_4 chr19:2945126-2945626 3.7e-05 6_[-6]_72 chr4:4541823-4542323 4.1e-05 26_[+6]_52 chr2:47176394-47176894 4.1e-05 33_[+6]_45 chr19:42325313-42325813 4.5e-05 57_[+6]_21 chr9:128787006-128787506 4.5e-05 28_[+6]_50 chr19:41859973-41860473 4.5e-05 71_[+6]_7 chr19:40690806-40691306 4.5e-05 32_[-6]_46 chr6:41532202-41532702 4.5e-05 30_[-6]_48 chr19:35899516-35900016 4.5e-05 11_[-6]_67 chr19:12669253-12669753 4.9e-05 43_[+6]_35 chr19:41706753-41707253 5.4e-05 21_[+6]_57 chrX:21839345-21839845 5.4e-05 57_[-6]_21 chr6:159726799-159727299 6e-05 47_[+6]_31 chr15:72474004-72474504 6e-05 64_[-6]_14 chr19:38335537-38336037 7.8e-05 72_[-6]_6 chr19:41884053-41884553 7.8e-05 26_[-6]_52 chr17:7242762-7243262 8.5e-05 11_[-6]_67 chr9:133030677-133031177 8.5e-05 18_[-6]_60 chr19:19192002-19192502 8.5e-05 40_[+6]_38 chr19:35775253-35775753 8.5e-05 20_[+6]_58 chr6:82247155-82247655 8.5e-05 73_[+6]_5 chr19:39125700-39126200 9.3e-05 21_[-6]_57 chr16:21599269-21599769 9.3e-05 24_[-6]_54 chr19:38402923-38403423 9.3e-05 30_[-6]_48 chr10:123008496-12300899 9.3e-05 44_[+6]_34 chr15:74099992-74100492 0.0001 45_[+6]_33 chr1:228139905-228140405 0.0001 72_[-6]_6 chr19:39539784-39540284 0.0001 3_[+6]_75 chr16:636569-637069 0.00011 64_[-6]_14 chr7:139359453-139359953 0.00011 9_[-6]_69 chr19:40420981-40421481 0.00011 30_[+6]_48 chr9:137241096-137241596 0.00011 26_[+6]_52 chr1:227735074-227735574 0.00012 39_[-6]_39 chr1:241423807-241424307 0.00012 45_[+6]_33 chr16:22298269-22298769 0.00013 17_[-6]_61 chr12:96035793-96036293 0.00014 13_[+6]_65 chr5:5340267-5340767 0.00014 61_[+6]_17 chr16:28974670-28975170 0.00022 59_[+6]_19 chr11:65919108-65919608 0.00022 60_[-6]_18 chr10:72215765-72216265 0.00022 55_[+6]_23 chr19:38831573-38832073 0.00064 1_[+6]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYCYYKCCBBYCYYYYYYBCYS width=22 seqs=116 chr19:4081557-4082057 ( 54) TCCTTTCCTCTCCTCCCTCCTC 1 chr19:49580436-49580936 ( 41) TCCTCTCTTCTCTTTCTCTCTC 1 chr17:7836726-7837226 ( 44) CTCTTTCCCCTCTCCCTTCCCG 1 chr12:122752517-12275301 ( 31) TTTTCTCCGCCCCCGTCTTCCG 1 chr1:26695358-26695858 ( 50) TTCTCTCCCCTCCTCCTTTGTG 1 chr19:38636832-38637332 ( 54) TTTCCGCCTCCTTTTTCCCCTG 1 chr21:35578287-35578787 ( 2) CTCCTGCCTCATTTGTCTTCTG 1 chr12:6970445-6970945 ( 13) CTTCCGCTGCCCTTTCTTTCGC 1 chr19:6161239-6161739 ( 6) TCCTTTCCTCACCTTTCACTTC 1 chr16:86563761-86564261 ( 21) CTTTTTCTTTTTCCTTTTCTCG 1 chr10:93702412-93702912 ( 61) CTCCCGCTGCCCTTGTTTCCCG 1 chr5:138338141-138338641 ( 31) TTCCCTCTTTCCCCTCCCCCAG 1 chr17:45148353-45148853 ( 17) CCTCCGCCTCCTCCTCTTTTCC 1 chr19:3721358-3721858 ( 78) TTCTCTCCCCACCTCCCATCAC 1 chr11:47578725-47579225 ( 1) TTCTCACCTGCGTTCCCTCCTT 1 chr19:45092783-45093283 ( 16) TTCCTGCCCTTTGTTTCTCTCT 1 chr5:96935764-96936264 ( 3) CTCTTGCTTCCCTCGCTCTTTC 1 chr20:45891007-45891507 ( 59) CTTCCTCCCGCCCCTTCTTTGG 1 chr12:132161226-13216172 ( 33) CTCCCTCAGCTCCTCCTCCCTC 1 chr10:47553293-47553793 ( 62) TTTCTGCCTTTTTGTTTCCCTC 1 chr10:132965075-13296557 ( 47) TTCCCTCCGTTCCCACTTCTCC 1 chr11:94767906-94768406 ( 3) TCCCTTCCTTTGTCCCCTGCCG 1 chr22:39520180-39520680 ( 67) CTCCCGCCCGCTCCCTTCCCTC 1 chr9:132944450-132944950 ( 27) CCCCCTCCGGACCTCCCCTCCT 1 chr7:129054745-129055245 ( 36) TTTTTTCCGGTTTTTCCACTTG 1 chr1:40691464-40691964 ( 17) CCGTTTCCCCTTTTCCCTTCCC 1 chr12:124914539-12491503 ( 5) TCCTCGCCTGTTCCGCTCTCTG 1 chr19:40598041-40598541 ( 4) ATCCCTCCCGCCTTTTCTCCAG 1 chr22:37686122-37686622 ( 79) ATCTCGCTTCTTCTTCTTGTTG 1 chr7:128343680-128344180 ( 36) TTTCCTCCGGTCTCTTTTGGGC 1 chr1:36464174-36464674 ( 24) TTCTCTCGGTCTTCGTCTGCTC 1 chr16:31179789-31180289 ( 56) TTCCTGCCTCCCCCTGCTCTTC 1 chr17:42998035-42998535 ( 69) TTCCCTCATGAGCTTCTTCCGC 1 chr5:140043080-140043580 ( 47) CTCTCTCGCGCCCCCTCTGCCC 1 chr15:67254477-67254977 ( 22) CTCCGGCCTGTCTCCCCCTCGC 1 chr19:49496004-49496504 ( 57) TTCCCGCCCGTCAGTCCTTCAC 1 chr17:7484043-7484543 ( 47) TCCTTTCCCGCCCTCCCTTGCG 1 chr1:155050363-155050863 ( 4) TTCTTTCCCGCCTCGCTCCCGG 1 chr8:10839745-10840245 ( 28) CCCCCTCAGTCCCTCTTTCTCC 1 chr21:25607259-25607759 ( 46) CCTTCTCCGCCCTCCTCCCCCG 1 chr1:235504236-235504736 ( 75) CTCCCACTCGCCCCGCCCTCTC 1 chr5:176388746-176389246 ( 76) GTCCTTCTCTACTTCCTTCCCT 1 chr11:112961060-11296156 ( 53) TTCTCACCCCCGCCCCCCGCTC 1 chr1:32817164-32817664 ( 41) CTGCTGCTCCTCACTTTTTCCG 1 chr15:72230289-72230789 ( 9) CCCCCGCATCCCCTTCCTCGCC 1 chr8:143829110-143829610 ( 23) CTCCCACTCTTGCTCCTTCCGC 1 chr19:49712302-49712802 ( 22) GTCCCTCTCCTCTTCTCCCTCG 1 chr20:62407304-62407804 ( 22) CTCTCGCTTTCTGTTCCCTTTG 1 chr19:11482570-11483070 ( 21) TCCCCGCCCCTCTCTCTAGCGG 1 chr15:73992083-73992583 ( 72) CCCCGGCCGGCCTCCTCTTCCT 1 chr17:82273324-82273824 ( 73) CCCCTACCGGTCCCGCTTGCCC 1 chr19:43463556-43464056 ( 17) ATCCCGCCCTTGTCCCTCTCCC 1 chr8:94719580-94720080 ( 12) CTCCGGCCGCTCCCCTCTCCCA 1 chr20:63941643-63942143 ( 45) CTGTCGCTTTCCTCTTCCTGCC 1 chr19:4123922-4124422 ( 6) TTGTGGCCGCCCCTCCCCTCCC 1 chr16:78099298-78099798 ( 50) CTTTCACCGCCTTCCTCTCCAG 1 chr1:228165569-228166069 ( 22) TTCCCGCTGCCCCACTCTTGTC 1 chr20:58650940-58651440 ( 57) CCTCTTCCTGTCCGTCCCTCGC 1 chr17:7717065-7717565 ( 1) CCCTTGCCCTCCTGCTCCTTCC 1 chr5:139517888-139518388 ( 69) CCGCCGCCTGCCTCTCTTGTCC 1 chr2:223957187-223957687 ( 57) TTCCGTCTTCCATCGTTTTCTC 1 chr10:87862153-87862653 ( 43) TTCCTACCGTTCCGTACTTTCC 1 chr14:101947909-10194840 ( 78) TTCTCACCTCTGCGTTCCGCGT 1 chr1:45521619-45522119 ( 51) CTCTTGCGCGTCTTGTTCTTGC 1 chr19:6677824-6678324 ( 4) TCCTGACCTGCCATTCTTCCCT 1 chr1:173714667-173715167 ( 79) CTATTTCCTTTCCCTTCACCGG 1 chr1:183471823-183472323 ( 27) CTCCTGCCGATTTCCCTCTTCC 1 chr19:55643335-55643835 ( 77) TTCCTTCCCTAGACCCTCTTCT 1 chr12:68686719-68687219 ( 2) TCTTCTCCCCTACCCCTTTTCT 1 chr12:54359102-54359602 ( 54) CTCTCTCTTTCGCTGTCTCTTA 1 chr1:30651335-30651835 ( 40) TCCCTGCCTGCCCACTCCCTCC 1 chr1:228109115-228109615 ( 30) GTCTCACCGCCCACTCTTGCCT 1 chr4:77075918-77076418 ( 22) TTTCGGCCGCACTTCTCTGTAC 1 chr17:75012370-75012870 ( 76) TTCCGGCGGGCGCTTCCTCCCC 1 chr14:103921380-10392188 ( 75) CTCTCCCCGCCCCTTCTTGCCT 1 chr19:2945126-2945626 ( 7) GCCCTTCCTCTCCTCCCCGCAC 1 chr4:4541823-4542323 ( 27) GTCCTGCCCCACACGCCTCCCC 1 chr2:47176394-47176894 ( 34) TCTTCTCGGGACCCCTTTCTTC 1 chr19:42325313-42325813 ( 58) CTCCCGCCCCCTCGCCCTCCCA 1 chr9:128787006-128787506 ( 29) TTCCCGCCGGAGGCTTTTGCGC 1 chr19:41859973-41860473 ( 72) CCCCGTCGTTCCCTTTCCCCTG 1 chr19:40690806-40691306 ( 33) TCGTCACCGCTCCTGCCCGCCC 1 chr6:41532202-41532702 ( 31) CTCCTGCCCCCGCCTCACTCCC 1 chr19:35899516-35900016 ( 12) TCCCCACTTAACCCTTCCTCCG 1 chr19:12669253-12669753 ( 44) CCCTCGCATTTCCGTTCCTCAT 1 chr19:41706753-41707253 ( 22) CTCTGTCAGCTCCTCCCTGCAG 1 chrX:21839345-21839845 ( 58) CTACCGCCGGCTCCTTCCTTGC 1 chr6:159726799-159727299 ( 48) CTTCCACCTTCCCTTCCCGTGA 1 chr15:72474004-72474504 ( 65) TCGTCGCGTCACTCCTCTTTGC 1 chr19:38335537-38336037 ( 73) GTCCCGCCCCTCTTGCCCGGTC 1 chr19:41884053-41884553 ( 27) CTCCCGCCGGCCGCTCTAGCGC 1 chr17:7242762-7243262 ( 12) TCCCTACCTTTCCAACCTCCTC 1 chr9:133030677-133031177 ( 19) CCCTCACCGCTCGCGTCATCCT 1 chr19:19192002-19192502 ( 41) TCCCCGCTCCTCAGTCTTTGCG 1 chr19:35775253-35775753 ( 21) TTCCCGCTGCCCCCCGCCCCCG 1 chr6:82247155-82247655 ( 74) TCCCCTCCCCACGGTCCCCCCG 1 chr19:39125700-39126200 ( 22) CCCTGGCCGGACCCCTTATCCT 1 chr16:21599269-21599769 ( 25) CCCCTGCACCAGTTTCCATCCG 1 chr19:38402923-38403423 ( 31) CTTCCGCCTTCACCGCCTCCAT 1 chr10:123008496-12300899 ( 45) TCGCCGCCGCCGCCGTCTTCGT 1 chr15:74099992-74100492 ( 46) CTTTTTCCGGTCCCGCCAGGTC 1 chr1:228139905-228140405 ( 73) GTCTCACTCGTTCTTCCCCGCC 1 chr19:39539784-39540284 ( 4) CTCCCGCGGCCTACCTCCGCCT 1 chr16:636569-637069 ( 65) TTCCCGCGTCACAGTCTCTTGT 1 chr7:139359453-139359953 ( 10) ACCTTACATTACATTCCCTCCC 1 chr19:40420981-40421481 ( 31) CCCCTGCGCCTCTCTCCATGCG 1 chr9:137241096-137241596 ( 27) CTACTTCCTCCTGCTTCCCCGC 1 chr1:227735074-227735574 ( 40) TCCTCACCGTTTCCGCTCCGGC 1 chr1:241423807-241424307 ( 46) TTGCCACCGTTGTCGCCCGCCG 1 chr16:22298269-22298769 ( 18) ATTCCTCCCTATTTTCATCCCT 1 chr12:96035793-96036293 ( 14) TTCTTTCGTGCGGTTCCTCGTT 1 chr5:5340267-5340767 ( 62) TCCTCTCGGCATTACTCATCCC 1 chr16:28974670-28975170 ( 60) ATTCCGCACGTCCCCTCCGCGC 1 chr11:65919108-65919608 ( 61) GCTCCGCCCCCGCCGTTTCCCG 1 chr10:72215765-72216265 ( 56) TCGCCGCTGGCTCCGTCTGTTG 1 chr19:38831573-38832073 ( 2) CCGCCGCCTTCGTCTACTGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.3131 E= 1.7e-010 -182 47 -220 127 -1350 19 -1350 181 -282 114 -174 -1 -1350 93 -1350 112 -1350 93 -174 73 -15 -520 52 102 -1350 165 -1350 -1350 -123 99 -162 6 -1350 -3 8 96 -340 52 -16 40 -8 47 -1350 109 -282 95 -103 18 -108 68 -220 88 -240 65 -174 102 -340 15 -68 124 -340 82 -420 115 -340 99 -1350 96 -82 29 -1350 148 -1350 29 -50 109 -1350 101 -150 46 -108 55 -68 46 -240 63 -12 -1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 116 E= 1.7e-010 0.051724 0.439655 0.068966 0.439655 0.000000 0.362069 0.000000 0.637931 0.025862 0.698276 0.094828 0.181034 0.000000 0.603448 0.000000 0.396552 0.000000 0.603448 0.094828 0.301724 0.163793 0.008621 0.456897 0.370690 0.000000 1.000000 0.000000 0.000000 0.077586 0.629310 0.103448 0.189655 0.000000 0.310345 0.336207 0.353448 0.017241 0.456897 0.284483 0.241379 0.172414 0.439655 0.000000 0.387931 0.025862 0.612069 0.155172 0.206897 0.086207 0.508621 0.068966 0.336207 0.034483 0.500000 0.094828 0.370690 0.017241 0.353448 0.198276 0.431034 0.017241 0.560345 0.017241 0.405172 0.017241 0.629310 0.000000 0.353448 0.103448 0.387931 0.000000 0.508621 0.000000 0.387931 0.224138 0.387931 0.000000 0.637931 0.112069 0.250000 0.086207 0.465517 0.198276 0.250000 0.034483 0.491379 0.293103 0.181034 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYYKCCBBYCYYYYYYBCYS MEME-6 regular expression -------------------------------------------------------------------------------- [CT][TC]C[CT][CT][GT]CC[TGC][CGT][CT][CT][CT][CT][TC][CT][CT][TC][CTG][CT][CT][CG] -------------------------------------------------------------------------------- Time 1803.50 secs. ******************************************************************************** ******************************************************************************** MOTIF KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 width = 43 sites = 5 llr = 201 E-value = 4.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::8:8a:2:::::::2::a22::::a26:::24::::48:::: pos.-specific C ::22::24a6a:aa:44a:8:6::2:::8862::2:84::4a8 probability G 62:8:::::::a::24::::8:8a8:84:2466a:2:2::::2 matrix T 48::2:84:4::::8:6::::42:::::2:::::882:2a6:: bits 2.5 * * * * 2.2 * * * * 2.0 * * * * 1.7 ** * **** ** * * * ** * Relative 1.5 ** *** * ***** ** * * *** ** * Entropy 1.2 ** *** * ***** *** * * * *** **** (57.9 bits) 1.0 ******* ******* ************** ***** ***** 0.7 ******* ******* *************** ***** ***** 0.5 *************** *************************** 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GTAGAATCCCCGCCTCTCACGCGGGAGACCCGGGTTCAATTCC consensus TGCCT CT T GGC AATT C AGTGGAA CGTCT C G sequence A A C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr1:16727096-16727596 + 6 7.19e-24 cagtg gtagaattctcgcctcccacgtgggagacccgggttcaattcc cggccaatgc chr1:16545707-16546207 - 43 9.96e-24 TGGTTCAGTG GTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCC CGGCCAATGC chr12:96035793-96036293 + 46 5.22e-20 agtatagtgg tgagtatccccgcctgtcacgcgggagaccggggttcgattcc ccgacgggga chr16:2603099-2603599 - 35 4.17e-17 GTCAGCCCTT GTAGAACACCCGCCGGTCACATGGCAGGCGGAAGTTCCATCCG GGAAAAGCAG chr19:4246718-4247218 - 36 3.99e-16 CTTTCATTGG TTCCAATCCCCGCCTATCAAGCTGGAAGTCCCAGCGTCTTCCC TCCGGAGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:16727096-16727596 7.2e-24 5_[+7]_52 chr1:16545707-16546207 1e-23 42_[-7]_15 chr12:96035793-96036293 5.2e-20 45_[+7]_12 chr16:2603099-2603599 4.2e-17 34_[-7]_23 chr19:4246718-4247218 4e-16 35_[-7]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC width=43 seqs=5 chr1:16727096-16727596 ( 6) GTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCAATTCC 1 chr1:16545707-16546207 ( 43) GTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCC 1 chr12:96035793-96036293 ( 46) TGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCC 1 chr16:2603099-2603599 ( 35) GTAGAACACCCGCCGGTCACATGGCAGGCGGAAGTTCCATCCG 1 chr19:4246718-4247218 ( 36) TTCCAATCCCCGCCTATCAAGCTGGAAGTCCCAGCGTCTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 12.199 E= 4.8e-005 -897 -897 92 113 -897 -897 -67 213 213 -67 -897 -897 -897 -67 133 -897 213 -897 -897 13 245 -897 -897 -897 -897 -67 -897 213 13 33 -897 113 -897 165 -897 -897 -897 92 -897 113 -897 165 -897 -897 -897 -897 165 -897 -897 165 -897 -897 -897 165 -897 -897 -897 -897 -67 213 13 33 33 -897 -897 33 -897 172 -897 165 -897 -897 245 -897 -897 -897 13 133 -897 -897 13 -897 133 -897 -897 92 -897 113 -897 -897 133 13 -897 -897 165 -897 -897 -67 133 -897 245 -897 -897 -897 13 -897 133 -897 172 -897 33 -897 -897 133 -897 13 -897 133 -67 -897 -897 92 33 -897 13 -67 92 -897 113 -897 92 -897 -897 -897 165 -897 -897 -67 -897 213 -897 -897 -67 213 -897 133 -897 13 113 33 -67 -897 213 -897 -897 13 -897 -897 -897 245 -897 33 -897 172 -897 165 -897 -897 -897 133 -67 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 5 E= 4.8e-005 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.200000 0.800000 0.800000 0.200000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.800000 0.000000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.200000 0.400000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.200000 0.400000 0.400000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.800000 0.200000 0.000000 0.000000 0.600000 0.400000 0.000000 0.200000 0.200000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.200000 0.800000 0.000000 0.800000 0.000000 0.200000 0.400000 0.400000 0.200000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAGAATHCYCGCCTVYCACGYGGGAGRCCSGRGTTCVATYCC MEME-7 regular expression -------------------------------------------------------------------------------- [GT][TG][AC][GC][AT]A[TC][CTA]C[CT]CGCC[TG][CGA][TC]CA[CA][GA][CT][GT]G[GC]A[GA][AG][CT][CG][CG][GAC][GA]G[TC][TG][CT][ACG][AT]T[TC]C[CG] -------------------------------------------------------------------------------- Time 2045.73 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACCCGGMCYGGAT MEME-8 width = 16 sites = 10 llr = 166 E-value = 6.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 Description -------------------------------------------------------------------------------- Simplified A a997:::::51:::a: pos.-specific C :::19a8::474:::: probability G ::11::2aa12:aa:3 matrix T :1:11::::::6:::7 bits 2.5 * * 2.2 * * 2.0 *** * 1.7 *** * ** *** Relative 1.5 *** * ** *** Entropy 1.2 *** ** ** ***** (24.0 bits) 1.0 ********* ***** 0.7 ********** ***** 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel AAAACCCGGACTGGAT consensus G CGC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:46394020-46394520 - 41 1.26e-10 GCTCCGCCGC AAAACCCGGACTGGAT CAGCCGGGAT chr9:121650143-121650643 + 59 3.46e-10 TGTGAGGTGC AAAACCCGGCCTGGAT TTCTGCCCAG chr11:61581275-61581775 - 12 6.92e-10 CAGCAAGCGG AAAACCCGGAGTGGAT CTCCACGCCT chr1:10796489-10796989 + 67 8.63e-09 GGTGGCATGC AAAACCCGGGCCGGAT CGCGGGGCCG chr17:7717065-7717565 - 25 1.45e-08 ATCCGGGGGA AAAACCGGGCCTGGAG CACCCTTGCC chr19:3721358-3721858 + 38 2.88e-08 GGCTGCGTGG ATAACCCGGCCTGGAG TTTCCGCCTC chr5:116574625-116575125 + 33 4.18e-08 GGGCGGAGCC AAGTCCCGGACTGGAT TGCGCAGATC chr17:30708659-30709159 - 79 4.18e-08 GCGCGC AAAATCCGGCCCGGAG TCGCCGCCCG chr2:96638166-96638666 + 58 4.49e-08 GGTGAGCGGC AAAGCCCGGAACGGAT GAAGCTCCGG chr22:38455916-38456416 - 57 1.07e-07 GGGGGGCACA AAACCCGGGAGCGGAT CCAGGAACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:46394020-46394520 1.3e-10 40_[-8]_44 chr9:121650143-121650643 3.5e-10 58_[+8]_26 chr11:61581275-61581775 6.9e-10 11_[-8]_73 chr1:10796489-10796989 8.6e-09 66_[+8]_18 chr17:7717065-7717565 1.5e-08 24_[-8]_60 chr19:3721358-3721858 2.9e-08 37_[+8]_47 chr5:116574625-116575125 4.2e-08 32_[+8]_52 chr17:30708659-30709159 4.2e-08 78_[-8]_6 chr2:96638166-96638666 4.5e-08 57_[+8]_27 chr22:38455916-38456416 1.1e-07 56_[-8]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACCCGGMCYGGAT width=16 seqs=10 chr1:46394020-46394520 ( 41) AAAACCCGGACTGGAT 1 chr9:121650143-121650643 ( 59) AAAACCCGGCCTGGAT 1 chr11:61581275-61581775 ( 12) AAAACCCGGAGTGGAT 1 chr1:10796489-10796989 ( 67) AAAACCCGGGCCGGAT 1 chr17:7717065-7717565 ( 25) AAAACCGGGCCTGGAG 1 chr19:3721358-3721858 ( 38) ATAACCCGGCCTGGAG 1 chr5:116574625-116575125 ( 33) AAGTCCCGGACTGGAT 1 chr17:30708659-30709159 ( 79) AAAATCCGGCCCGGAG 1 chr2:96638166-96638666 ( 58) AAAGCCCGGAACGGAT 1 chr22:38455916-38456416 ( 57) AAACCCGGGAGCGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 13.2596 E= 6.8e-002 245 -997 -997 -997 230 -997 -997 -87 230 -997 -166 -997 194 -166 -166 -87 -997 150 -997 -87 -997 165 -997 -997 -997 133 -67 -997 -997 -997 165 -997 -997 -997 165 -997 145 33 -166 -997 -87 114 -67 -997 -997 33 -997 172 -997 -997 165 -997 -997 -997 165 -997 245 -997 -997 -997 -997 -997 -8 194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 10 E= 6.8e-002 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.100000 0.000000 0.700000 0.100000 0.100000 0.100000 0.000000 0.900000 0.000000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.400000 0.100000 0.000000 0.100000 0.700000 0.200000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.300000 0.700000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCGGMCYGGAT MEME-8 regular expression -------------------------------------------------------------------------------- AAAACC[CG]GG[AC][CG][TC]GGA[TG] -------------------------------------------------------------------------------- Time 2291.60 secs. ******************************************************************************** ******************************************************************************** MOTIF RAHTCTCGCGAKAM MEME-9 width = 14 sites = 13 llr = 184 E-value = 3.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 Description -------------------------------------------------------------------------------- Simplified A 552:::::::a184 pos.-specific C :25:a:a:a::1:6 probability G 521::::a:a:52: matrix T 1:2a:a:::::4:: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 ******** * Relative 1.5 ******** * Entropy 1.2 ******** * (20.4 bits) 1.0 ******** ** 0.7 ** ******** ** 0.5 ** *********** 0.2 ************** 0.0 -------------- Multilevel AACTCTCGCGAGAC consensus GCA T A sequence GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr12:118016493-11801699 - 3 1.58e-08 GCGCAAAAGC AACTCTCGCGAGAC GC chr19:41859973-41860473 + 30 1.58e-08 GAGCTTTCGG AACTCTCGCGAGAC CCTACGCCCG chr12:122752517-12275301 + 84 2.86e-08 GCGGCGGCCG GAATCTCGCGATAA AGG chr19:49496004-49496504 + 31 4.78e-08 TGGGGCCTAA GACTCTCGCGAGAC ACCGTCTAGC chr1:156282639-156283139 + 57 9.84e-08 TGCTGCTACC AAATCTCGCGAAAC TCGTTTTCCC chr12:48957308-48957808 + 54 1.51e-07 AGCTAGCGGC AGTTCTCGCGAGAC CCATCACCAT chr19:4123922-4124422 + 40 1.73e-07 TCGCGGACCG GCTTCTCGCGATAA CGGGATCGGG chr7:139359453-139359953 - 81 1.97e-07 TACCCC GGATCTCGCGATAC TCTGGTTCCT chr15:66356473-66356973 + 19 1.97e-07 GACTAAGCGC GCTTCTCGCGATAC TCGGGAACTC chr8:143829110-143829610 + 76 3.34e-07 CGGTGCACGG AACTCTCGCGAGGA AGGAGGTAAG chr20:35742146-35742646 - 4 5.01e-07 AGCCATACTT AGGTCTCGCGATAC TTC chr19:39445317-39445817 - 39 5.52e-07 GGCTGACGGG TCCTCTCGCGAGAA CCTACCCGTT chr17:39461164-39461664 + 79 1.36e-06 GAGGCTACTG GACTCTCGCGACGA TTTCTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:118016493-11801699 1.6e-08 2_[-9]_84 chr19:41859973-41860473 1.6e-08 29_[+9]_57 chr12:122752517-12275301 2.9e-08 83_[+9]_3 chr19:49496004-49496504 4.8e-08 30_[+9]_56 chr1:156282639-156283139 9.8e-08 56_[+9]_30 chr12:48957308-48957808 1.5e-07 53_[+9]_33 chr19:4123922-4124422 1.7e-07 39_[+9]_47 chr7:139359453-139359953 2e-07 80_[-9]_6 chr15:66356473-66356973 2e-07 18_[+9]_68 chr8:143829110-143829610 3.3e-07 75_[+9]_11 chr20:35742146-35742646 5e-07 3_[-9]_83 chr19:39445317-39445817 5.5e-07 38_[-9]_48 chr17:39461164-39461664 1.4e-06 78_[+9]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAHTCTCGCGAKAM width=14 seqs=13 chr12:118016493-11801699 ( 3) AACTCTCGCGAGAC 1 chr19:41859973-41860473 ( 30) AACTCTCGCGAGAC 1 chr12:122752517-12275301 ( 84) GAATCTCGCGATAA 1 chr19:49496004-49496504 ( 31) GACTCTCGCGAGAC 1 chr1:156282639-156283139 ( 57) AAATCTCGCGAAAC 1 chr12:48957308-48957808 ( 54) AGTTCTCGCGAGAC 1 chr19:4123922-4124422 ( 40) GCTTCTCGCGATAA 1 chr7:139359453-139359953 ( 81) GGATCTCGCGATAC 1 chr15:66356473-66356973 ( 19) GCTTCTCGCGATAC 1 chr8:143829110-143829610 ( 76) AACTCTCGCGAGGA 1 chr20:35742146-35742646 ( 4) AGGTCTCGCGATAC 1 chr19:39445317-39445817 ( 39) TCCTCTCGCGAGAA 1 chr17:39461164-39461664 ( 79) GACTCTCGCGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 12.5016 E= 3.3e+001 134 -1035 54 -124 156 -46 -46 -1035 34 54 -204 34 -1035 -1035 -1035 245 -1035 165 -1035 -1035 -1035 -1035 -1035 245 -1035 165 -1035 -1035 -1035 -1035 165 -1035 -1035 165 -1035 -1035 -1035 -1035 165 -1035 245 -1035 -1035 -1035 -124 -204 54 108 221 -1035 -104 -1035 108 95 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 13 E= 3.3e+001 0.461538 0.000000 0.461538 0.076923 0.538462 0.230769 0.230769 0.000000 0.230769 0.461538 0.076923 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.076923 0.461538 0.384615 0.846154 0.000000 0.153846 0.000000 0.384615 0.615385 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAHTCTCGCGAKAM MEME-9 regular expression -------------------------------------------------------------------------------- [AG][ACG][CAT]TCTCGCGA[GT]A[CA] -------------------------------------------------------------------------------- Time 2534.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGATGTCAY MEME-10 width = 10 sites = 17 llr = 202 E-value = 3.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 Description -------------------------------------------------------------------------------- Simplified A 1::9::::9: pos.-specific C 2:::2::a:5 probability G 8:a11a::1: matrix T :a::8:a::5 bits 2.5 * * 2.2 * * 2.0 * * * * 1.7 *** **** Relative 1.5 *** **** Entropy 1.2 ******** (17.1 bits) 1.0 ********* 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel GTGATGTCAT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------- chr17:78558302-78558802 - 11 3.72e-07 ACCCATGAGG GTGATGTCAT CCACCCATGA chr1:3992023-3992523 + 55 3.72e-07 TCATGGAGAG GTGATGTCAT GGAGAGGTGA chr17:74514093-74514593 + 16 3.72e-07 tatgtaatgg gtgatgtcat gtgggggtgg chr1:17208015-17208515 - 7 3.72e-07 ATCACTTCCT GTGATGTCAT CCCTAC chr12:130765135-13076563 + 22 3.72e-07 TGATGTCGTG GTGATGTCAT TGTGCTGATG chr8:144456658-144457158 - 44 3.72e-07 TGATGCCAGT GTGATGTCAT CTCTGTGATG chr9:85743215-85743715 - 85 1.02e-06 TGAAGA GTGATGTCAC ATTCCCAGGG chr17:1293387-1293887 + 57 2.25e-06 GTTGGGTTTG ATGATGTCAT GGGCTGGGTT chr10:50067627-50068127 - 56 2.90e-06 CTCACGTGAC CTGATGTCAC GTGACAGAAC chr10:45726943-45727443 - 52 2.90e-06 CTCACGTGAC CTGATGTCAC GTGACAGAAC chr19:45972042-45972542 + 23 2.90e-06 CACACCCCCT CTGATGTCAC TGTTGCACAC chr21:43789236-43789736 - 84 4.41e-06 GCGTGGC GTGACGTCAC AGCCCGCGAC chr7:129952715-129953215 - 53 4.41e-06 CGTCACAGAG GTGACGTCAC GGCGCCCAGA chr18:74495901-74496401 + 75 4.41e-06 GCTGGGAGAG GTGACGTCAC CTTCCGCACC chr1:31387508-31388008 - 47 5.06e-06 CGGGGTGTGG GTGAGGTCAT CTGTGTGGAT chr16:58129367-58129867 + 70 6.36e-06 TGGCACCTGC GTGGTGTCAT GAGAacgtgg chr22:35257414-35257914 - 37 1.04e-05 CACCCCAGAG GTGATGTCGC GGGCCCAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:78558302-78558802 3.7e-07 10_[-10]_80 chr1:3992023-3992523 3.7e-07 54_[+10]_36 chr17:74514093-74514593 3.7e-07 15_[+10]_75 chr1:17208015-17208515 3.7e-07 6_[-10]_84 chr12:130765135-13076563 3.7e-07 21_[+10]_69 chr8:144456658-144457158 3.7e-07 43_[-10]_47 chr9:85743215-85743715 1e-06 84_[-10]_6 chr17:1293387-1293887 2.3e-06 56_[+10]_34 chr10:50067627-50068127 2.9e-06 55_[-10]_35 chr10:45726943-45727443 2.9e-06 51_[-10]_39 chr19:45972042-45972542 2.9e-06 22_[+10]_68 chr21:43789236-43789736 4.4e-06 83_[-10]_7 chr7:129952715-129953215 4.4e-06 52_[-10]_38 chr18:74495901-74496401 4.4e-06 74_[+10]_16 chr1:31387508-31388008 5.1e-06 46_[-10]_44 chr16:58129367-58129867 6.4e-06 69_[+10]_21 chr22:35257414-35257914 1e-05 36_[-10]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGATGTCAY width=10 seqs=17 chr17:78558302-78558802 ( 11) GTGATGTCAT 1 chr1:3992023-3992523 ( 55) GTGATGTCAT 1 chr17:74514093-74514593 ( 16) GTGATGTCAT 1 chr1:17208015-17208515 ( 7) GTGATGTCAT 1 chr12:130765135-13076563 ( 22) GTGATGTCAT 1 chr8:144456658-144457158 ( 44) GTGATGTCAT 1 chr9:85743215-85743715 ( 85) GTGATGTCAC 1 chr17:1293387-1293887 ( 57) ATGATGTCAT 1 chr10:50067627-50068127 ( 56) CTGATGTCAC 1 chr10:45726943-45727443 ( 52) CTGATGTCAC 1 chr19:45972042-45972542 ( 23) CTGATGTCAC 1 chr21:43789236-43789736 ( 84) GTGACGTCAC 1 chr7:129952715-129953215 ( 53) GTGACGTCAC 1 chr18:74495901-74496401 ( 75) GTGACGTCAC 1 chr1:31387508-31388008 ( 47) GTGAGGTCAT 1 chr16:58129367-58129867 ( 70) GTGGTGTCAT 1 chr22:35257414-35257914 ( 37) GTGATGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 54600 bayes= 13.014 E= 3.9e+002 -163 -85 127 -1073 -1073 -1073 -1073 245 -1073 -1073 165 -1073 237 -1073 -243 -1073 -1073 -85 -243 207 -1073 -1073 165 -1073 -1073 -1073 -1073 245 -1073 165 -1073 -1073 237 -1073 -243 -1073 -1073 57 -1073 154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 17 E= 3.9e+002 0.058824 0.176471 0.764706 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.941176 0.000000 0.058824 0.000000 0.000000 0.176471 0.058824 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 0.000000 0.470588 0.000000 0.529412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTCAY MEME-10 regular expression -------------------------------------------------------------------------------- GTGATGTCA[TC] -------------------------------------------------------------------------------- Time 2776.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30021492-30021992 8.55e-01 100 chr21:35578287-35578787 1.22e-03 1_[-6(3.61e-07)]_11_[+5(4.60e-06)]_\ 35 chr1:245464285-245464785 3.00e-09 1_[-5(1.48e-09)]_15_[-2(3.20e-06)]_\ 14_[-2(6.57e-08)]_[-2(7.57e-06)]_3 chr19:44844627-44845127 3.36e-01 100 chr17:18625545-18626045 9.73e-01 100 chr11:65215702-65216202 1.23e-02 17_[-2(4.89e-05)]_40_[-2(2.34e-05)]_\ 4_[-2(1.72e-05)]_3 chr16:67935562-67936062 4.60e-01 100 chr20:45891007-45891507 3.84e-02 58_[-6(1.94e-06)]_20 chr10:132163298-13216379 1.78e-02 9_[-1(6.32e-06)]_8_[-1(3.49e-05)]_\ 39 chr19:55634682-55635182 4.02e-04 18_[-4(6.34e-07)]_67 chr12:121686840-12168734 7.66e-02 100 chrX:21839345-21839845 1.10e-01 57_[-6(5.43e-05)]_21 chr5:139747091-139747591 8.79e-05 25_[+1(9.70e-06)]_20_[+5(6.26e-05)]_\ 2 chr6:37819174-37819674 3.03e-01 100 chr18:48946348-48946848 2.65e-02 31_[-2(1.54e-05)]_57 chr19:40798641-40799141 1.20e-01 100 chr19:34404313-34404813 1.19e-04 27_[+1(6.16e-05)]_11_[-6(1.11e-05)]_\ 18 chr10:5889875-5890375 4.32e-01 100 chr19:43533854-43534354 5.82e-01 100 chr19:44165068-44165568 2.68e-01 100 chr1:10679572-10680072 6.14e-02 17_[+3(5.58e-05)]_49 chr19:49676218-49676718 1.06e-01 21_[+1(1.11e-05)]_57 chr19:38729622-38730122 5.79e-01 100 chr19:17334630-17335130 8.12e-01 100 chr7:150405126-150405626 1.59e-01 65_[+1(6.16e-05)]_13 chr16:89007882-89008382 6.84e-03 8_[+2(1.95e-06)]_55_[+2(1.95e-06)]_\ 13 chr6:82260165-82260665 2.45e-02 17_[+5(9.38e-09)]_52 chr9:130299588-130300088 2.01e-06 [+2(7.04e-06)]_13_[+5(1.09e-09)]_1_\ [+5(2.60e-10)]_[+2(1.54e-05)] chr17:82418258-82418758 5.54e-01 100 chr10:72215765-72216265 6.43e-04 6_[-1(1.16e-07)]_72 chr19:38975209-38975709 1.16e-01 9_[+1(9.42e-05)]_14_[-1(9.42e-05)]_\ 33 chr1:40691464-40691964 1.36e-02 16_[-6(4.57e-06)]_62 chr17:75810171-75810671 9.58e-01 100 chr5:38827496-38827996 3.85e-02 66_[-5(7.38e-06)]_3 chr11:78079646-78080146 8.22e-01 100 chr17:44014751-44015251 3.82e-03 62_[+4(7.92e-06)]_23 chr19:18223794-18224294 2.54e-03 2_[+5(4.39e-05)]_4_[+4(6.69e-05)]_\ 48 chr9:137241096-137241596 3.16e-01 100 chr17:38598496-38598996 7.53e-01 100 chr19:2739966-2740466 7.64e-03 74_[+4(6.71e-06)]_11 chr21:31873932-31874432 4.35e-02 5_[+1(9.42e-05)]_73 chr12:6970445-6970945 1.27e-03 12_[-6(6.20e-07)]_66 chr15:68229230-68229730 1.39e-01 100 chr1:173714667-173715167 6.44e-02 78_[-6(2.45e-05)] chr20:33401288-33401788 3.16e-02 54_[-8(6.41e-06)]_30 chr19:33412865-33413365 7.29e-07 29_[+2(1.18e-05)]_12_[-1(3.48e-08)]_\ 25 chr11:66002010-66002510 8.06e-01 100 chr19:29873380-29873880 5.65e-01 100 chr19:36528333-36528833 9.67e-01 100 chr2:96638166-96638666 4.51e-05 57_[+8(4.49e-08)]_27 chr9:137254961-137255461 2.10e-03 6_[+1(1.28e-05)]_55_[-4(5.43e-05)]_\ 2 chr1:26692953-26693453 4.41e-02 100 chr8:144456658-144457158 4.57e-03 16_[-10(1.02e-06)]_3_\ [-10(3.72e-07)]_4_[-10(3.72e-07)]_17_[-10(3.72e-07)]_5_[-10(6.13e-05)]_5 chr20:38730797-38731297 9.37e-01 100 chr5:90529366-90529866 2.63e-04 77_[+1(1.06e-06)]_1 chr22:38455916-38456416 5.87e-03 56_[-8(1.07e-07)]_28 chr8:144428333-144428833 8.07e-01 100 chr6:13873597-13874097 4.54e-02 [+1(4.41e-05)]_78 chr3:12556752-12557252 8.50e-01 100 chr15:74615455-74615955 6.95e-02 10_[-4(8.91e-07)]_75 chr19:4246718-4247218 3.93e-09 35_[-7(3.99e-16)]_22 chr12:53675833-53676333 6.04e-02 42_[-6(2.60e-06)]_36 chr19:36605321-36605821 1.68e-02 27_[+1(7.36e-07)]_51 chr17:39153581-39154081 9.91e-01 100 chr17:81636899-81637399 6.29e-02 36_[+4(5.21e-06)]_49 chr1:25247105-25247605 4.41e-01 100 chr18:74495901-74496401 3.22e-05 44_[+1(6.87e-05)]_8_[+10(4.41e-06)]_\ 16 chr22:20117111-20117611 1.48e-01 13_[+1(8.49e-05)]_65 chr21:34073388-34073888 8.37e-02 40_[+6(2.45e-05)]_38 chr19:39445317-39445817 1.73e-04 2_[-4(1.81e-05)]_21_[-9(5.52e-07)]_\ [-3(4.03e-05)]_14 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1.09e-11 16_[-5(5.47e-08)]_1_[-2(1.82e-06)]_\ 6_[-2(2.93e-07)]_[-2(7.04e-06)]_10 chr10:11283733-11284233 1.88e-04 9_[-5(1.66e-06)]_2_[-2(8.48e-06)]_\ 14_[-5(1.09e-07)]_1 chr19:8592359-8592859 1.13e-02 17_[+1(9.70e-06)]_61 chr7:129054745-129055245 3.73e-03 17_[+4(9.78e-05)]_3_[+6(4.57e-06)]_\ 43 chr17:3846053-3846553 9.96e-01 100 chr18:63367428-63367928 8.04e-01 100 chr3:53347438-53347938 1.96e-01 47_[+4(5.14e-05)]_38 chr11:118436039-11843653 3.03e-01 100 chr6:143450499-143450999 6.21e-01 100 chr19:45092783-45093283 4.56e-02 15_[+6(1.94e-06)]_63 chr9:137422975-137423475 1.80e-01 100 chr20:18587663-18588163 6.32e-05 5_[-5(4.24e-06)]_10_[+1(6.10e-07)]_\ 32 chr9:133417874-133418374 7.15e-01 100 chr2:3574927-3575427 7.94e-01 100 chr19:12840484-12840984 1.26e-02 44_[+1(1.89e-05)]_34 chr12:53452283-53452783 4.44e-01 100 chr1:26695358-26695858 1.60e-02 49_[+6(3.61e-07)]_29 chr6:35259421-35259921 2.29e-02 24_[+4(2.53e-05)]_61 chr19:39970721-39971221 3.50e-02 56_[-1(2.15e-05)]_22 chr3:10320922-10321422 3.07e-01 100 chr19:41706753-41707253 4.98e-01 21_[+6(5.43e-05)]_57 chr12:123601808-12360230 1.33e-02 15_[-4(2.06e-06)]_70 chr4:77075918-77076418 3.19e-02 21_[-6(3.34e-05)]_24_[-6(2.72e-05)]_\ 11 chr19:40444344-40444844 3.25e-01 100 chr14:24188649-24189149 5.27e-01 100 chr19:3573807-3574307 2.62e-04 5_[-1(2.12e-06)]_49_[-1(1.28e-05)]_\ 2 chr1:37989826-37990326 1.25e-01 37_[+4(1.35e-06)]_48 chr10:45726943-45727443 1.22e-02 51_[-10(2.90e-06)]_39 chr19:35643351-35643851 3.22e-01 68_[+8(7.77e-05)]_16 chr4:4672967-4673467 1.23e-03 46_[-1(4.02e-06)]_32 chr5:176388746-176389246 3.56e-04 75_[-6(1.11e-05)]_3 chr1:25998130-25998630 1.62e-01 100 chr19:49363430-49363930 5.49e-05 49_[+1(2.50e-06)]_29 chr1:1375023-1375523 7.12e-01 100 chr17:32341944-32342444 2.61e-01 86_[+2(6.37e-05)]_2 chr1:45521619-45522119 4.96e-02 50_[-6(2.45e-05)]_28 chr1:234373431-234373931 3.25e-01 100 chr20:1118281-1118781 5.53e-03 41_[-4(2.91e-07)]_44 chr19:1652608-1653108 7.21e-01 100 chr17:993480-993980 1.93e-04 11_[-1(1.66e-05)]_11_[-1(6.87e-05)]_\ 7_[+2(8.36e-05)]_3_[+2(7.04e-06)] chr19:58519587-58520087 6.58e-01 100 chr17:7242762-7243262 1.24e-01 11_[-6(8.51e-05)]_67 chr1:154558610-154559110 2.02e-03 37_[+6(3.47e-06)]_41 chr14:101947909-10194840 4.56e-02 77_[-6(2.45e-05)]_1 chr12:122752517-12275301 8.44e-07 30_[+6(2.46e-07)]_2_[-9(8.97e-06)]_\ 15_[+9(2.86e-08)]_3 chr17:77233791-77234291 3.26e-01 100 chr8:94719580-94720080 1.83e-02 11_[+6(1.58e-05)]_67 chr16:21599269-21599769 2.74e-01 24_[-6(9.27e-05)]_54 chr17:45161293-45161793 5.28e-02 62_[-1(7.31e-06)]_16 chr12:49060553-49061053 8.03e-02 100 chr12:52903323-52903823 9.44e-01 100 chr11:69376959-69377459 2.65e-05 3_[+2(3.20e-06)]_16_[-1(1.66e-05)]_\ 10_[+2(2.93e-07)]_25 chr22:37686122-37686622 6.58e-03 78_[-6(5.96e-06)] chr1:3992023-3992523 5.90e-04 4_[+10(5.63e-05)]_24_\ [+10(3.72e-07)]_6_[+10(3.72e-07)]_6_[+10(3.72e-07)]_6_[+10(3.72e-07)]_4 chr1:44213171-44213671 3.55e-01 100 chr7:141551105-141551605 1.03e-01 100 chr12:132161226-13216172 2.80e-03 17_[+6(2.25e-06)]_31_[+6(8.72e-06)]_\ 8 chr1:30191256-30191756 1.29e-02 17_[+2(2.12e-05)]_30_[+2(5.62e-05)]_\ 29 chr19:35903617-35904117 9.51e-02 63_[-1(2.75e-05)]_15 chr1:212791591-212792091 3.86e-02 70_[+4(9.97e-07)]_15 chr1:9943141-9943641 5.20e-01 100 chr3:9731390-9731890 9.25e-01 100 chrX:1452844-1453344 3.49e-03 34_[-1(5.03e-07)]_44 chrX:73944034-73944534 1.95e-01 100 chr19:6161239-6161739 5.07e-08 5_[-6(8.73e-07)]_1_[+1(9.20e-08)]_1_\ [+1(9.70e-06)]_27 chr17:45148353-45148853 3.10e-03 16_[-6(1.42e-06)]_62 chr16:67872796-67873296 4.55e-05 18_[-4(1.09e-09)]_6_[+4(7.92e-06)]_\ 46 chr17:63842491-63842991 1.58e-01 81_[+4(5.73e-05)]_4 chr22:24555566-24556066 6.29e-02 77_[-4(2.80e-06)]_8 chr1:27321872-27322372 1.88e-02 64_[-10(4.86e-05)]_26 chr19:35947352-35947852 4.75e-11 45_[-2(1.03e-07)]_[-2(1.03e-07)]_\ [-2(1.03e-07)]_19 chr19:55643335-55643835 3.77e-03 76_[+6(2.72e-05)]_2 chr10:50067627-50068127 1.20e-02 55_[-10(2.90e-06)]_35 chr12:132303742-13230424 7.73e-04 4_[+2(6.62e-05)]_1_[+5(4.60e-06)]_\ 22_[-1(6.32e-06)]_8 chr16:2603099-2603599 3.84e-08 34_[-7(4.17e-17)]_23 chr15:72231095-72231595 2.72e-01 100 chr19:1383508-1384008 9.89e-02 100 chr1:236097021-236097521 8.38e-01 100 chr21:6565242-6565742 7.51e-06 3_[+5(2.64e-08)]_5_[+5(2.20e-10)]_\ 30 chr21:45442671-45443171 4.68e-03 30_[+1(9.70e-06)]_48 chr19:3721358-3721858 5.18e-05 37_[+8(2.88e-08)]_24_[-6(1.66e-06)]_\ 1 chr1:183471823-183472323 6.46e-02 26_[-6(2.72e-05)]_52 chr6:157323317-157323817 2.60e-03 46_[+4(3.37e-08)]_39 chr19:39125700-39126200 3.51e-02 21_[-6(9.27e-05)]_57 chr10:93702412-93702912 6.59e-03 60_[-6(1.21e-06)]_18 chr15:65868938-65869438 3.06e-03 38_[+5(2.32e-05)]_31 chr1:228109115-228109615 4.07e-03 29_[-6(3.02e-05)]_19_[+1(5.52e-05)]_\ 8 chr19:38335537-38336037 3.95e-04 34_[-4(7.76e-05)]_23_[-6(7.80e-05)]_\ 6 chr5:134371107-134371607 1.06e-02 54_[+6(3.69e-05)]_24 chr17:21235862-21236362 6.54e-08 1_[+5(1.43e-11)]_11_[+5(4.11e-09)]_\ 26 chr19:8922528-8923028 1.23e-05 37_[-5(9.27e-06)]_6_[+1(1.80e-07)]_\ 4 chr15:65610891-65611391 3.35e-01 36_[+4(8.53e-05)]_2_[+4(8.53e-05)]_\ 13_[-4(5.43e-05)]_4 chr1:30651335-30651835 1.70e-03 1_[+6(6.53e-05)]_16_[+6(3.02e-05)]_\ [-1(9.70e-06)]_17 chr19:46600772-46601272 8.83e-01 100 chr1:125179934-125180434 2.03e-01 100 chr20:58650940-58651440 1.94e-02 10_[-4(7.03e-05)]_31_[-6(1.97e-05)]_\ 22 chr16:89008655-89009155 2.87e-02 18_[+2(1.95e-06)]_23_[+2(1.95e-06)]_\ 23_[+2(1.95e-06)] chr1:54715566-54716066 1.56e-01 100 chr19:35557948-35558448 2.03e-04 17_[+1(2.69e-08)]_16_[+1(3.10e-05)]_\ 23 chr19:58380524-58381024 2.10e-01 100 chr15:67254477-67254977 2.73e-01 21_[-6(6.78e-06)]_57 chr19:41310147-41310647 2.40e-01 34_[+1(6.87e-05)]_44 chr17:78558302-78558802 1.42e-03 10_[-10(3.72e-07)]_12_\ [-10(2.25e-06)]_12_[-10(2.25e-06)]_36 chr16:1271747-1272247 9.88e-01 100 chr16:30957581-30958081 6.64e-01 100 chr12:132828715-13282921 8.58e-01 100 chr12:12266863-12267363 4.35e-01 100 chr2:241881406-241881906 4.97e-12 [-2(1.03e-07)]_[-2(1.03e-07)]_\ [-2(8.92e-07)]_38_[+1(1.11e-05)]_4 chr19:17337119-17337619 1.65e-01 100 chr17:17206339-17206839 2.63e-03 3_[-1(1.06e-06)]_18_[-1(1.89e-05)]_\ 35 chr12:1907490-1907990 1.43e-03 10_[+1(2.12e-06)]_1_[-2(3.33e-05)]_\ 14_[-2(6.48e-07)]_29 chr21:46264659-46265159 3.35e-05 39_[+2(6.57e-08)]_49 chr17:7836726-7837226 2.02e-02 43_[+6(1.34e-07)]_35 chr21:44810770-44811270 8.86e-11 17_[+2(6.57e-08)]_4_[+2(7.89e-07)]_\ 3_[+5(6.24e-09)]_[+2(6.57e-08)]_9 chr21:39313474-39313974 3.22e-01 100 chr6:169840095-169840595 4.31e-07 9_[+5(3.57e-07)]_5_[-1(2.69e-08)]_\ 11_[+2(5.71e-06)]_10 chr9:132944450-132944950 1.17e-01 26_[+6(4.57e-06)]_52 chr16:88882218-88882718 1.58e-07 [-2(4.54e-05)]_[+1(6.49e-09)]_\ [-5(6.50e-07)]_7_[+1(1.28e-05)]_6 chr10:101830482-10183098 3.23e-09 [+2(1.03e-07)]_[+2(1.03e-07)]_26_\ [+2(6.37e-05)]_25_[+2(1.03e-07)]_1 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************