# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:39 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF14.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:39 PDT 2018)
#        host: surya
#        when: Thu May 10 17:01:03 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.172 C 0.323 G 0.330 T 0.174


MOTIF CMCGCCCM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CMCGCCCM   KGGGCGKG        168         52   1.0e-018   3.0e-014
#         CACGCCCA   TGGGCGTG         44          5   2.0e-009   5.9e-005
#         CACGCCCC   GGGGCGTG         38          7   1.0e-006   3.1e-002
#         CCCGCCCA   TGGGCGGG         43         13   2.5e-005   7.3e-001
#         CCCGCCCC   GGGGCGGG         66         28   2.9e-005   8.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 226 E= 3.0e-014
0.000000 1.000000 0.000000 0.000000
0.482301 0.517699 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.464602 0.535398 0.000000 0.000000


MOTIF SCCGGAAS DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    SCCGGAAS   STTCCGGS         63          8   1.4e-012   4.0e-008
#         CCCGGAAC   GTTCCGGG         22          1   2.4e-006   7.0e-002
#         GCCGGAAG   CTTCCGGC         21          2   2.9e-005   8.3e-001
#         GCCGGAAC   GTTCCGGC         12          1   1.6e-003   4.8e+001
#         CCCGGAAG   CTTCCGGG         16          4   5.6e-003   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 4.0e-008
0.000000 0.541667 0.458333 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.486111 0.513889 0.000000


MOTIF GCGGAR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GCGGAR     YTCCGC        185        101   7.8e-009   2.3e-004
#           GCGGAG     CTCCGC        122         64   2.4e-006   6.9e-002
#           GCGGAA     TTCCGC         81         42   1.4e-004   3.9e+000

letter-probability matrix: alength= 4 w= 6 nsites= 233 E= 2.3e-004
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.373391 0.000000 0.626609 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 40.78 seconds