Invoking: getsize /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.119998 Invoking: fasta-most -min 50 < /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.369943 Invoking: fasta-center -dna -len 100 < /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa 1> /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.474665 Invoking: fasta-shuffle-letters /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.356416 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background Finished invoke: name: bg status: 0 time: 0.308826 Invoking: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 1013.782005 Invoking: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled Finished invoke: name: dreme status: 0 time: 17.788716 Invoking: centrimo -seqlen 200 -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/centrimo_out -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: centrimo status: 0 time: 3.560162 Invoking: tomtom -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: meme_tomtom status: 0 time: 7.293073 Invoking: tomtom -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: dreme_tomtom status: 0 time: 1.727285 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/combined.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/combined.meme 1> /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.281943 Invoking: spamo -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/spamo_out_1 -bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background -primary GTGTGTGTGTGTGTGTGTGTG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo1 status: 0 time: 1.73518 Invoking: spamo -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/spamo_out_2 -bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background -primary GCCMCGCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo2 status: 0 time: 1.476292 Invoking: spamo -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/spamo_out_3 -bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background -primary GKGGGCGK /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo3 status: 0 time: 1.435667 Invoking: spamo -verbosity 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/spamo_out_4 -bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background -primary CTTCCGS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo4 status: 0 time: 1.444341 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/fimo_out_1 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background --motif GTGTGTGTGTGTGTGTGTGTG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa Finished invoke: name: fimo1 status: 0 time: 0.781741 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/fimo_out_2 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background --motif GCCMCGCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa Finished invoke: name: fimo2 status: 0 time: 0.339058 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background --motif GKGGGCGK /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa Finished invoke: name: fimo3 status: 0 time: 0.396594 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background --motif CTTCCGS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa Finished invoke: name: fimo4 status: 0 time: 0.393692 Writing output Invoking: meme-chip_html_to_tsv /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/meme-chip.html /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/summary.tsv Finished invoke: name: summary status: 0 time: 0.263052 Done