# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered (Wed Dec 27 12:08:59 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF13.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Dec 27 12:08:59 PST 2017)
#        host: kadru
#        when: Wed Dec 27 12:25:54 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.191 C 0.307 G 0.311 T 0.192


MOTIF GCCMCGCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCMCGCC   GGCGKGGC        107         15   2.7e-020   7.9e-016
#         GCCCCGCC   GGCGGGGC         64          9   3.2e-012   9.2e-008
#         GCCACGCC   GGCGTGGC         50          7   9.6e-010   2.8e-005

letter-probability matrix: alength= 4 w= 8 nsites= 134 E= 7.9e-016
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.470149 0.529851 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GKGGGCGK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GKGGGCGK   MCGCCCMC        105         31   5.1e-012   1.5e-007
#         GTGGGCGG   CCGCCCAC         31          3   2.8e-007   8.0e-003
#         GGGGGCGT   ACGCCCCC         20          4   7.0e-004   2.0e+001
#         GGGGGCGG   CCGCCCCC         44         20   1.4e-003   4.1e+001
#         GTGGGCGT   ACGCCCAC         20          5   1.9e-003   5.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 1.5e-007
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.515873 0.484127
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.626984 0.373016


MOTIF CTTCCGS DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CTTCCGS    SCGGAAG         60         17   2.0e-007   5.7e-003
#          CTTCCGG    CCGGAAG         37          9   1.5e-005   4.2e-001
#          CTTCCGC    GCGGAAG         26          8   1.3e-003   3.7e+001

letter-probability matrix: alength= 4 w= 7 nsites= 67 E= 5.7e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.402985 0.597015 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 17.17 seconds