# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:46 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:46 PST 2017)
#        host: surya
#        when: Mon Dec 18 16:06:10 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.167 C 0.341 G 0.331 T 0.161


MOTIF CMCGCCCM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CMCGCCCM   KGGGCGKG        225         53   1.1e-033   3.1e-029
#         CCCGCCCC   GGGGCGGG        124         29   2.3e-017   6.5e-013
#         CACGCCCC   GGGGCGTG         67         14   2.7e-010   7.6e-006
#         CCCGCCCA   TGGGCGGG         38          9   8.7e-006   2.4e-001
#         CACGCCCA   TGGGCGTG         25          3   1.1e-005   3.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 276 E= 3.1e-029
0.000000 1.000000 0.000000 0.000000
0.391304 0.608696 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.242754 0.757246 0.000000 0.000000


MOTIF ATTGGYY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ATTGGYY    RRCCAAT        107          7   2.2e-026   6.0e-022
#          ATTGGCT    AGCCAAT         54          2   6.9e-015   1.9e-010
#          ATTGGCC    GGCCAAT         32          4   7.0e-007   1.9e-002
#          ATTGGTC    GACCAAT         19          0   1.7e-006   4.5e-002
#          ATTGGTT    AACCAAT         11          1   3.1e-003   8.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 128 E= 6.0e-022
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.742188 0.000000 0.257812
0.000000 0.453125 0.000000 0.546875


MOTIF ACRCCCY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ACRCCCY    RGGGYGT        167         61   2.1e-015   5.8e-011
#          ACACCCC    GGGGTGT         93         33   7.9e-009   2.1e-004
#          ACACCCT    AGGGTGT         40         16   7.2e-004   1.9e+001
#          ACGCCCT    AGGGCGT         25          7   9.2e-004   2.5e+001
#          ACGCCCC    GGGGCGT         23          9   9.2e-003   2.5e+002

letter-probability matrix: alength= 4 w= 7 nsites= 220 E= 5.8e-011
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.768182 0.000000 0.231818 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.609091 0.000000 0.390909


MOTIF GCYCCGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCYCCGCC   GGCGGRGC         71         23   1.3e-007   3.4e-003
#         GCTCCGCC   GGCGGAGC         35         10   9.5e-005   2.5e+000
#         GCCCCGCC   GGCGGGGC         40         13   9.8e-005   2.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 3.4e-003
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.545455 0.000000 0.454545
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACGTGR DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CACGTGR    YCACGTG         36          5   2.6e-007   6.9e-003
#          CACGTGA    TCACGTG         26          3   6.1e-006   1.6e-001
#          CACGTGG    CCACGTG         19          4   1.2e-003   3.1e+001

letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 6.9e-003
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.660000 0.000000 0.340000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 22.90 seconds