Invoking: getsize /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.066139 Invoking: fasta-most -min 50 < /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.063564 Invoking: fasta-center -dna -len 100 < /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa 1> /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.075129 Invoking: fasta-shuffle-letters /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.02663 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background Finished invoke: name: bg status: 0 time: 0.033415 Invoking: meme /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 3264.52603 Invoking: dreme -v 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled Finished invoke: name: dreme status: 0 time: 29.259274 Invoking: centrimo -seqlen 500 -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/centrimo_out -bfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: centrimo status: 0 time: 8.416517 Invoking: tomtom -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: meme_tomtom status: 0 time: 27.008204 Invoking: tomtom -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: dreme_tomtom status: 0 time: 1.522032 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/combined.meme /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/combined.meme 1> /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/motif_alignment.txt Finished invoke: name: align status: 0 time: 3.636677 Invoking: spamo -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/spamo_out_1 -bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -primary CSCSCCCCSGCCMCGCCCCCNS /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo1 status: 0 time: 109.017318 Invoking: spamo -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/spamo_out_2 -bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -primary YBSYSATTGGCY /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo2 status: 0 time: 98.290844 Invoking: spamo -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/spamo_out_3 -bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -primary TTTNTSAAWDRAADBAWWHAWT /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo3 status: 0 time: 49.309569 Invoking: spamo -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/spamo_out_4 -bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -primary ACGTSA /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo4 status: 0 time: 52.574191 Invoking: spamo -verbosity 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/spamo_out_5 -bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -primary TGABTCA /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme Finished invoke: name: spamo5 status: 0 time: 20.071398 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_1 --bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CSCSCCCCSGCCMCGCCCCCNS /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa Finished invoke: name: fimo1 status: 0 time: 0.394539 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 --bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif YBSYSATTGGCY /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa Finished invoke: name: fimo2 status: 0 time: 0.308301 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TTTNTSAAWDRAADBAWWHAWT /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa Finished invoke: name: fimo3 status: 0 time: 0.342267 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 --bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif ACGTSA /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa Finished invoke: name: fimo4 status: 0 time: 0.135972 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_5 --bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TGABTCA /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa Finished invoke: name: fimo5 status: 0 time: 0.152464 Writing output Invoking: meme-chip_html_to_tsv /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme-chip.html /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/summary.tsv Finished invoke: name: summary status: 0 time: 0.548105 Done