# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:57 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/KLF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:58 PDT 2018)
#        host: kali
#        when: Thu May 10 17:08:52 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.182 C 0.325 G 0.308 T 0.185


MOTIF CMCRCCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CMCRCCC    GGGYGKG        469        219   9.4e-050   2.6e-045
#          CACACCC    GGGTGTG        224         69   2.4e-026   6.6e-022
#          CACGCCC    GGGCGTG        148         29   1.0e-023   2.8e-019
#          CCCGCCC    GGGCGGG        136         58   5.1e-010   1.4e-005
#          CCCACCC    GGGTGGG        168        112   8.4e-005   2.3e+000

letter-probability matrix: alength= 4 w= 7 nsites= 948 E= 2.6e-045
0.000000 1.000000 0.000000 0.000000
0.622363 0.377637 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.617089 0.000000 0.382911 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGGHGGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGGHGGA    TCCDCCC        192         77   6.7e-016   1.8e-011
#          GGGTGGA    TCCACCC         87         31   2.9e-008   7.7e-004
#          GGGCGGA    TCCGCCC         54         17   3.4e-006   9.0e-002
#          GGGAGGA    TCCTCCC         62         31   5.5e-004   1.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 278 E= 1.8e-011
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.291367 0.244604 0.000000 0.464029
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGCCY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACGCCY     RGGCGT         94         28   1.1e-010   2.7e-006
#           ACGCCT     AGGCGT         54         16   1.6e-006   4.0e-002
#           ACGCCC     GGGCGT         42         12   1.8e-005   4.6e-001

letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 2.7e-006
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.411765 0.000000 0.588235


MOTIF GRGATTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GRGATTA    TAATCYC         40          2   1.1e-010   2.9e-006
#          GGGATTA    TAATCCC         29          2   1.7e-007   4.4e-003
#          GAGATTA    TAATCTC         11          0   4.7e-004   1.2e+001

letter-probability matrix: alength= 4 w= 7 nsites= 42 E= 2.9e-006
0.000000 0.000000 1.000000 0.000000
0.309524 0.000000 0.690476 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCGCRCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCRCCC   GGGYGCGG         47         11   5.8e-007   1.5e-002
#         CCGCGCCC   GGGCGCGG         28          7   2.1e-004   5.4e+000
#         CCGCACCC   GGGTGCGG         20          4   7.0e-004   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.5e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.392157 0.000000 0.607843 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 29.52 seconds