# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/INSM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/INSM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/INSM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/INSM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:46 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/INSM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:46 PST 2017)
#        host: surya
#        when: Mon Dec 18 16:08:04 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.271 C 0.229 G 0.232 T 0.268


MOTIF TGASTMA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TGASTMA    TKASTCA        175         22   3.9e-036   1.3e-031
#          TGACTCA    TGAGTCA        136          8   8.0e-035   2.6e-030
#          TGACTAA    TTAGTCA         23          6   1.0e-003   3.3e+001
#          TGAGTAA    TTACTCA         24          8   3.1e-003   1.0e+002

letter-probability matrix: alength= 4 w= 7 nsites= 198 E= 1.3e-031
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.505051 0.494949 0.000000
0.000000 0.000000 0.000000 1.000000
0.237374 0.762626 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTMC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATTMC      GKAAT        335        175   4.5e-021   1.4e-016
#            ATTCC      GGAAT        233         99   2.1e-018   6.7e-014
#            ATTAC      GTAAT        155         86   4.2e-007   1.3e-002

letter-probability matrix: alength= 4 w= 5 nsites= 450 E= 1.4e-016
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.375556 0.624444 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF RYAAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RYAAACA    TGTTTRY        126         38   3.9e-014   1.2e-009
#          GTAAACA    TGTTTAC         34          7   9.3e-006   2.9e-001
#          ATAAACA    TGTTTAT         42         12   1.8e-005   5.5e-001
#          GCAAACA    TGTTTGC         27          8   8.1e-004   2.5e+001
#          ACAAACA    TGTTTGT         31         11   1.2e-003   3.8e+001

letter-probability matrix: alength= 4 w= 7 nsites= 136 E= 1.2e-009
0.536765 0.000000 0.463235 0.000000
0.000000 0.426471 0.000000 0.573529
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGABGTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGABGTCA   TGACVTCA         59          5   1.3e-013   3.9e-009
#         TGATGTCA   TGACATCA         35          3   2.2e-008   6.7e-004
#         TGACGTCA   TGACGTCA         11          0   4.7e-004   1.4e+001
#         TGAGGTCA   TGACCTCA         14          2   2.0e-003   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 3.9e-009
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.139241 0.227848 0.632911
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCHATAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCHATAAA   TTTATDGC         30          1   1.1e-008   3.2e-004
#         GCAATAAA   TTTATTGC         16          1   1.3e-004   3.8e+000
#         GCTATAAA   TTTATAGC          9          0   1.9e-003   5.8e+001
#         GCCATAAA   TTTATGGC          7          0   7.7e-003   2.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.2e-004
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.515152 0.212121 0.000000 0.272727
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 24.11 seconds