# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 RTGACTCAB MEME-1 RTGACTCAB 3.2e-031 4.2e-034 -76.85 0.0 182 492 300 453 0.36992 1.7e-036 245 1 SWGYRHHGGAATGYD MEME-2 SWGYRHHGGAATGYD 4.2e-037 5.6e-040 -90.38 0.0 152 486 277 440 0.31276 2.3e-042 242 1 RRRTGATGTCAT MEME-3 RRRTGATGTCAT 8.7e-011 1.2e-013 -29.78 0.0 283 489 272 346 0.57873 4.8e-016 244 1 KTGTTTAYWYWD MEME-6 KTGTTTAYWYWD 2.0e-002 2.6e-005 -10.54 0.0 85 489 121 439 0.17382 1.1e-007 244 1 CGNRGDGWTRATRAYGWBRTKKKRSTGATGHMATGGWGWTG MEME-10 CGNRGDGWTRATRAYGWBRTKKKRSTGATGHMATGGWGWTG 1.7e-001 2.2e-004 -8.40 0.0 48 460 7 8 0.10435 9.8e-007 229 2 TGASTMA DREME-1 TGASTCA 2.3e-030 3.1e-033 -74.85 0.0 248 494 264 315 0.50202 1.3e-035 246 2 ATTMC DREME-2 ATTMC 1.2e-013 1.5e-016 -36.41 0.0 84 496 175 537 0.16935 6.2e-019 247 2 RYAAACA DREME-3 RYAAACA 1.8e-007 2.4e-010 -22.17 0.0 84 494 100 294 0.17004 9.6e-013 246 2 TGABGTCA DREME-4 TGATGTCA 1.0e-009 1.4e-012 -27.32 0.0 235 493 96 116 0.47667 5.6e-015 246 2 GCHATAAA DREME-5 GCWATAAA 2.7e-003 3.6e-006 -12.52 0.0 141 493 51 89 0.28600 1.5e-008 246 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 2.2e-012 2.9e-015 -33.48 0.0 253 491 394 571 0.51527 1.2e-017 245 3 M0718_1.02 FOXK1 DNRTMAACAH 4.3e-003 5.8e-006 -12.06 0.0 79 491 145 577 0.16090 2.4e-008 245 3 M0719_1.02 FOXG1 RTAAACAW 5.8e-005 7.8e-008 -16.37 0.0 165 493 240 513 0.33469 3.2e-010 246 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 2.1e-002 2.9e-005 -10.46 0.0 75 493 134 570 0.15213 1.2e-007 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 5.2e-001 7.0e-004 -7.27 0.0 77 491 130 563 0.15682 2.9e-006 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 1.1e-003 1.5e-006 -13.41 0.0 141 491 229 573 0.28717 6.1e-009 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 3.3e0000 4.4e-003 -5.42 0.0 66 492 104 522 0.13415 1.8e-005 245 3 M0890_1.02 LHX6 NYAATCAN 9.8e-001 1.3e-003 -6.64 0.0 253 493 343 566 0.51318 5.3e-006 246 3 M0892_1.02 EMX1 NYTAATKAVN 4.3e-003 5.8e-006 -12.06 0.0 241 491 330 543 0.49084 2.4e-008 245 3 M0894_1.02 LBX1 TTAATTAG 2.8e0000 3.7e-003 -5.59 0.0 211 493 270 520 0.42799 1.5e-005 246 3 M0896_1.02 VENTX TTAATTAG 9.9e-003 1.3e-005 -11.23 0.0 197 493 262 506 0.39959 5.4e-008 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 2.7e-002 3.6e-005 -10.25 0.0 253 491 345 553 0.51527 1.4e-007 245 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 3.4e-001 4.6e-004 -7.69 0.0 234 494 265 454 0.47368 1.9e-006 246 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 2.7e0000 3.6e-003 -5.63 0.0 246 492 333 565 0.50000 1.5e-005 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 1.4e0000 1.9e-003 -6.28 0.0 152 492 217 545 0.30894 7.7e-006 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDBN 2.9e-004 3.8e-007 -14.78 0.0 302 492 170 211 0.61382 1.6e-009 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 5.9e0000 7.9e-003 -4.85 0.0 141 493 163 434 0.28600 3.2e-005 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 8.9e-002 1.2e-004 -9.04 0.0 232 492 308 532 0.47154 4.8e-007 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 3.2e-001 4.3e-004 -7.74 0.0 110 492 162 519 0.22358 1.8e-006 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 5.1e-001 6.8e-004 -7.29 0.0 197 493 262 525 0.39959 2.8e-006 246 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 5.5e0000 7.3e-003 -4.92 0.0 135 491 192 541 0.27495 3.0e-005 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 5.3e-003 7.0e-006 -11.87 0.0 189 491 273 545 0.38493 2.9e-008 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 7.1e-002 9.5e-005 -9.26 0.0 152 492 217 527 0.30894 3.9e-007 245 3 M1281_1.02 (NAIF1)_(Xenopus_tropicalis)_(DBD_0.71) NNTACGYHN 2.4e-002 3.2e-005 -10.36 0.0 266 492 231 340 0.54065 1.3e-007 245 3 M1545_1.02 GMEB1 NNNRCGTNN 2.7e-003 3.6e-006 -12.53 0.0 314 492 353 465 0.63821 1.5e-008 245 3 M1581_1.02 (CIC)_(Mus_musculus)_(DBD_1.00) NNTGCTGACW 5.4e-003 7.3e-006 -11.83 0.0 221 491 327 581 0.45010 3.0e-008 245 3 M1863_1.02 FOXD1 GTAAACAW 8.5e-003 1.1e-005 -11.39 0.0 185 493 262 536 0.37525 4.6e-008 246 3 M1917_1.02 USF1 GGTCACRTGRB 1.9e-001 2.6e-004 -8.25 0.0 156 490 211 501 0.31837 1.1e-006 244 3 M2270_1.02 DUX4 TAAYYYAATCA 8.9e-001 1.2e-003 -6.73 0.0 108 490 153 499 0.22041 4.9e-006 244 3 M2278_1.02 FOS DVTGASTCATB 1.4e-022 1.8e-025 -56.95 0.0 182 490 316 520 0.37143 7.5e-028 244 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 7.8e-001 1.0e-003 -6.87 0.0 256 488 319 511 0.52459 4.3e-006 243 3 M2289_1.02 JUN DDRATGATGTMAT 4.3e-014 5.7e-017 -37.40 0.0 146 488 250 512 0.29918 2.3e-019 243 3 M2292_1.02 JUND DRTGASTCATS 1.4e-020 1.8e-023 -52.36 0.0 234 490 360 509 0.47755 7.5e-026 244 3 M2296_1.02 MAFK MWDASTCAGCAWWWW 4.9e-002 6.5e-005 -9.64 0.0 154 486 230 548 0.31687 2.7e-007 242 3 M2385_1.02 FOXP2 RWGTAAACAVR 2.2e-001 2.9e-004 -8.15 0.0 84 490 137 543 0.17143 1.2e-006 244 3 M2387_1.02 SREBF1 RTGGGGTGAB 3.3e-001 4.5e-004 -7.71 0.0 101 491 157 542 0.20570 1.8e-006 245 3 M2388_1.02 SREBF2 RTGGGGTGAY 3.8e0000 5.1e-003 -5.29 0.0 115 491 168 537 0.23422 2.1e-005 245 3 M4451_1.02 ATF3 GGTCACGTGRS 2.5e-001 3.3e-004 -8.01 0.0 252 490 284 455 0.51429 1.4e-006 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 3.3e-013 4.4e-016 -35.37 0.0 238 486 375 557 0.48971 1.8e-018 242 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 5.8e-019 7.8e-022 -48.60 0.0 160 486 290 534 0.32922 3.2e-024 242 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 7.2e-020 9.6e-023 -50.70 0.0 245 487 365 500 0.50308 4.0e-025 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 9.0e-003 1.2e-005 -11.33 0.0 86 486 150 556 0.17695 5.0e-008 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 2.4e-002 3.2e-005 -10.35 0.0 110 486 147 440 0.22634 1.3e-007 242 3 M4619_1.02 FOSL1 BGGTGASTCAK 2.5e-021 3.4e-024 -54.05 0.0 182 490 303 499 0.37143 1.4e-026 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 4.8e-018 6.5e-021 -46.49 0.0 156 486 272 508 0.32099 2.7e-023 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 2.9e-011 3.8e-014 -30.89 0.0 172 484 247 454 0.35537 1.6e-016 241 3 M4680_1.02 BACH1 GTCACGTG 3.7e-002 4.9e-005 -9.92 0.0 155 493 222 529 0.31440 2.0e-007 246 3 M4681_1.02 BACH2 TGCTGAGTCA 5.4e-011 7.3e-014 -30.25 0.0 105 491 181 481 0.21385 3.0e-016 245 3 M5234_1.02 (SIM1)_(Drosophila_melanogaster)_(DBD_0.89) GGTCACGTAC 7.7e-002 1.0e-004 -9.18 0.0 289 491 262 367 0.58859 4.2e-007 245 3 M5292_1.02 ATF4 RKATGAYGCAATM 1.7e-012 2.2e-015 -33.74 0.0 214 488 308 487 0.43852 9.2e-018 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 8.7e-015 1.2e-017 -39.00 0.0 167 487 191 321 0.34292 4.8e-020 243 3 M5302_1.02 BATF3 TGATGACGTCATCA 1.7e-010 2.2e-013 -29.13 0.0 213 487 127 172 0.43737 9.2e-016 243 3 M5310_1.02 BSX NTAATBRS 1.5e0000 2.0e-003 -6.20 0.0 239 493 312 540 0.48479 8.2e-006 246 3 M5323_1.02 CREB3 KGRTGACGTCAYNV 2.2e-009 3.0e-012 -26.55 0.0 251 487 235 325 0.51540 1.2e-014 243 3 M5342_1.02 DLX4 NTAATTRN 1.1e0000 1.5e-003 -6.52 0.0 143 493 209 553 0.29006 6.0e-006 246 3 M5343_1.02 DLX5 NTAATTRN 6.5e0000 8.6e-003 -4.75 0.0 143 493 204 552 0.29006 3.5e-005 246 3 M5344_1.02 DLX6 NTAATTRB 1.1e0000 1.5e-003 -6.52 0.0 101 493 156 550 0.20487 6.0e-006 246 3 M5346_1.02 DPRX SHTAATCCNN 9.4e0000 1.3e-002 -4.38 0.0 123 491 184 567 0.25051 5.1e-005 245 3 M5349_1.02 DUXA NTRAYYTAATCAN 8.6e-003 1.2e-005 -11.37 0.0 108 488 167 514 0.22131 4.7e-008 243 3 M5388_1.02 EMX2 NYTAATTAVB 9.5e-002 1.3e-004 -8.97 0.0 239 491 304 510 0.48676 5.2e-007 245 3 M5390_1.02 EN1 VBTAATTRSB 2.5e-001 3.4e-004 -7.98 0.0 159 491 228 541 0.32383 1.4e-006 245 3 M5394_1.02 EN2 NNTAATTRVN 1.5e0000 2.0e-003 -6.24 0.0 111 491 166 541 0.22607 8.0e-006 245 3 M5414_1.02 ESX1 DNTAATTRRN 2.5e-001 3.3e-004 -8.00 0.0 239 491 327 557 0.48676 1.4e-006 245 3 M5427_1.02 EVX1 SNTAATYABB 2.6e0000 3.5e-003 -5.66 0.0 257 491 335 547 0.52342 1.4e-005 245 3 M5428_1.02 EVX2 NNTAATKABB 4.2e-002 5.6e-005 -9.79 0.0 243 491 329 546 0.49491 2.3e-007 245 3 M5446_1.02 FOXD4L2 RTAAACA 2.7e-002 3.6e-005 -10.23 0.0 188 494 279 574 0.38057 1.5e-007 246 3 M5460_1.02 FOXL1 RTAAACA 7.3e-005 9.7e-008 -16.15 0.0 188 494 285 560 0.38057 3.9e-010 246 3 M5480_1.02 GBX1 RBTAATTRGB 3.8e-003 5.0e-006 -12.20 0.0 241 491 312 509 0.49084 2.1e-008 245 3 M5481_1.02 GBX2 NYTAATTRSB 4.5e-002 6.0e-005 -9.72 0.0 247 491 327 534 0.50305 2.5e-007 245 3 M5493_1.02 GMEB2 KTRCGTAA 1.2e-006 1.6e-009 -20.24 0.0 313 493 356 454 0.63489 6.6e-012 246 3 M5502_1.02 GSX1 NBTAATKRSN 2.5e0000 3.3e-003 -5.71 0.0 239 491 316 547 0.48676 1.3e-005 245 3 M5518_1.02 HMX1 NDTTAATTGNT 1.1e-002 1.5e-005 -11.14 0.0 104 490 168 541 0.21224 6.0e-008 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 9.3e-002 1.2e-004 -9.00 0.0 146 490 219 551 0.29796 5.1e-007 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 2.2e0000 3.0e-003 -5.81 0.0 228 490 315 567 0.46531 1.2e-005 244 3 M5542_1.02 HOXB3 NYTAATKRNN 6.4e0000 8.6e-003 -4.76 0.0 239 491 315 550 0.48676 3.5e-005 245 3 M5543_1.02 HOXB5 NHTAATKRNN 1.7e-001 2.2e-004 -8.41 0.0 143 491 219 569 0.29124 9.1e-007 245 3 M5544_1.02 HOXC10 DTTTWATKDB 7.0e0000 9.3e-003 -4.68 0.0 83 491 131 557 0.16904 3.8e-005 245 3 M5557_1.02 HOXD12 GTAATAAAA 7.9e0000 1.1e-002 -4.55 0.0 166 492 227 540 0.33740 4.3e-005 245 3 M5583_1.02 ISL2 YTAAKTGC 1.0e-002 1.4e-005 -11.21 0.0 163 493 248 566 0.33063 5.5e-008 246 3 M5587_1.02 JDP2 ATGASTCAT 6.8e-028 9.1e-031 -69.17 0.0 234 492 373 506 0.47561 3.7e-033 245 3 M5602_1.02 LHX9 YTAATTRN 1.4e-001 1.8e-004 -8.62 0.0 101 493 160 546 0.20487 7.4e-007 246 3 M5623_1.02 MEOX1 VSTAATTANC 5.4e-004 7.2e-007 -14.14 0.0 239 491 329 536 0.48676 3.0e-009 245 3 M5624_1.02 MEOX2 NSTAATTAWN 1.4e-002 1.9e-005 -10.87 0.0 239 491 331 552 0.48676 7.8e-008 245 3 M5631_1.02 MIXL1 NBTAATTRVN 2.7e0000 3.6e-003 -5.62 0.0 101 491 154 546 0.20570 1.5e-005 245 3 M5632_1.02 MLX RTCACGTGAT 8.0e-003 1.1e-005 -11.45 0.0 157 491 161 351 0.31976 4.3e-008 245 3 M5635_1.02 MNX1 TTTAATTRNH 6.9e-001 9.2e-004 -6.99 0.0 153 491 217 537 0.31161 3.7e-006 245 3 M5689_1.02 NRL DWWNTGCTGAC 4.7e0000 6.3e-003 -5.06 0.0 218 490 315 596 0.44490 2.6e-005 244 3 M5772_1.02 RAX2 BTAATTRR 6.3e-001 8.4e-004 -7.08 0.0 101 493 157 547 0.20487 3.4e-006 246 3 M5807_1.02 SHOX2 YTAATTRR 8.8e0000 1.2e-002 -4.44 0.0 101 493 149 539 0.20487 4.8e-005 246 3 M5932_1.02 TFEC VTCAYGTGAY 2.7e0000 3.6e-003 -5.64 0.0 103 491 157 548 0.20978 1.5e-005 245 3 M5941_1.02 UNCX NTAATYBAATTAN 4.8e-001 6.4e-004 -7.35 0.0 246 488 321 532 0.50410 2.6e-006 243 3 M5944_1.02 VAX1 YTAATTAN 4.2e-003 5.6e-006 -12.08 0.0 159 493 234 536 0.32252 2.3e-008 246 3 M5945_1.02 VAX2 YTAATTAN 5.9e-004 7.9e-007 -14.05 0.0 225 493 314 540 0.45639 3.2e-009 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 1.3e-018 1.7e-021 -47.84 0.0 251 489 289 378 0.51329 6.9e-024 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 2.1e-001 2.8e-004 -8.18 0.0 93 491 152 556 0.18941 1.1e-006 245 3 M6151_1.02 ARNT BYRCGTGC 8.1e0000 1.1e-002 -4.53 0.0 313 493 345 479 0.63489 4.4e-005 246 3 M6152_1.02 ATF1 VTGACGTCAV 1.8e-013 2.4e-016 -35.99 0.0 255 491 357 501 0.51935 9.6e-019 245 3 M6180_1.02 CREB1 RTGACGTMA 8.8e-014 1.2e-016 -36.68 0.0 252 492 390 560 0.51220 4.8e-019 245 3 M6181_1.02 CREM CRVTGACGTCA 1.3e-009 1.8e-012 -27.07 0.0 252 490 361 531 0.51429 7.2e-015 244 3 M6186_1.02 DBP KVTTRCATAAB 8.6e0000 1.1e-002 -4.47 0.0 280 490 362 553 0.57143 4.7e-005 244 3 M6189_1.02 DLX3 GMTAATTRSW 5.9e0000 7.9e-003 -4.84 0.0 115 491 161 516 0.23422 3.2e-005 245 3 M6197_1.02 E4F1 YGTKACGTC 8.3e-006 1.1e-008 -18.32 0.0 262 492 310 453 0.53252 4.5e-011 245 3 M6228_1.02 FOSB CTGACTCAYV 8.2e-020 1.1e-022 -50.56 0.0 159 491 307 576 0.32383 4.5e-025 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 9.1e-004 1.2e-006 -13.62 0.0 128 488 211 564 0.26230 5.0e-009 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 9.7e0000 1.3e-002 -4.35 0.0 86 486 119 479 0.17695 5.4e-005 242 3 M6239_1.02 FOXF2 HWADGTAAACA 1.5e0000 2.0e-003 -6.20 0.0 86 490 136 542 0.17551 8.3e-006 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 9.6e0000 1.3e-002 -4.36 0.0 87 491 135 552 0.17719 5.3e-005 245 3 M6247_1.02 FOXO4 MRTAAACAA 6.0e0000 8.0e-003 -4.83 0.0 70 492 115 563 0.14228 3.3e-005 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 2.4e0000 3.2e-003 -5.76 0.0 61 489 92 472 0.12474 1.3e-005 244 3 M6258_1.02 GATA6 NWGATAA 3.3e-001 4.5e-004 -7.71 0.0 138 494 206 554 0.27935 1.8e-006 246 3 M6277_1.02 HLF SKRTTACRYAAYH 2.3e0000 3.1e-003 -5.78 0.0 228 488 260 459 0.46721 1.3e-005 243 3 M6290_1.02 HOXA13 CCAATAAWAHC 6.4e-001 8.5e-004 -7.07 0.0 254 490 330 535 0.51837 3.5e-006 244 3 M6296_1.02 HOXB6 KKCATMAATCAWT 3.4e0000 4.6e-003 -5.39 0.0 210 488 231 435 0.43033 1.9e-005 243 3 M6297_1.02 HOXB7 MATYAATCAA 8.1e-001 1.1e-003 -6.83 0.0 257 491 300 479 0.52342 4.4e-006 245 3 M6298_1.02 HOXB8 BMATTAATCAA 1.1e0000 1.4e-003 -6.54 0.0 242 490 268 448 0.49388 5.9e-006 244 3 M6331_1.02 MAFB WGCTGACDS 1.8e-001 2.5e-004 -8.31 0.0 256 492 369 597 0.52033 1.0e-006 245 3 M6332_1.02 MAF KTGCTGAC 2.6e-003 3.5e-006 -12.56 0.0 211 493 322 593 0.42799 1.4e-008 246 3 M6333_1.02 MAFG MATGACT 1.9e-018 2.5e-021 -47.44 0.0 188 494 343 587 0.38057 1.0e-023 246 3 M6359_1.02 NFE2L1 NATGACD 1.1e-018 1.5e-021 -47.95 0.0 194 494 352 589 0.39271 6.1e-024 246 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 9.4e-006 1.3e-008 -18.19 0.0 109 489 200 589 0.22290 5.2e-011 244 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 1.7e-006 2.2e-009 -19.93 0.0 253 487 289 424 0.51951 9.1e-012 243 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 7.8e0000 1.0e-002 -4.56 0.0 111 489 158 521 0.22699 4.3e-005 244 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 1.1e-002 1.4e-005 -11.16 0.0 213 483 306 551 0.44099 5.9e-008 241 3 M6415_1.02 PDX1 CTAATTACY 3.6e-005 4.8e-008 -16.85 0.0 240 492 312 497 0.48780 2.0e-010 245 3 M6419_1.02 PKNOX1 HATCARTCAABYB 1.6e0000 2.1e-003 -6.17 0.0 192 488 271 560 0.39344 8.6e-006 243 3 M6461_1.02 RXRB YSTGACCTSA 2.2e0000 3.0e-003 -5.82 0.0 259 491 360 585 0.52749 1.2e-005 245 3 M6507_1.02 TEAD1 YACATTCCWSMKSH 1.3e-013 1.8e-016 -36.27 0.0 139 487 268 585 0.28542 7.3e-019 243 3 M6510_1.02 TEF TGTTTATRTAAMTK 4.1e-003 5.4e-006 -12.13 0.0 265 487 360 545 0.54415 2.2e-008 243 3 M6518_1.02 TFEB RGTCACGTG 6.6e0000 8.8e-003 -4.73 0.0 182 492 177 376 0.36992 3.6e-005 245 3 M6534_1.02 VSX2 WDAGCTAATTA 1.9e0000 2.5e-003 -5.97 0.0 378 490 377 441 0.77143 1.0e-005 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).