# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:46 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:46 PST 2017)
#        host: surya
#        when: Mon Dec 18 16:06:42 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.215 C 0.287 G 0.276 T 0.222


MOTIF HRGGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      HRGGAA     TTCCYD        422        232   1.1e-028   3.4e-024
#           TGGGAA     TTCCCA        142         48   3.5e-014   1.1e-009
#           CGGGAA     TTCCCG        109         30   2.6e-013   8.5e-009
#           CAGGAA     TTCCTG        110         55   2.5e-006   8.2e-002
#           AGGGAA     TTCCCT        135         81   3.2e-005   1.0e+000
#           AAGGAA     TTCCTT        100         57   1.5e-004   4.9e+000
#           TAGGAA     TTCCTA         38         18   4.4e-003   1.4e+002

letter-probability matrix: alength= 4 w= 6 nsites= 708 E= 3.4e-024
0.377119 0.343220 0.000000 0.279661
0.378531 0.000000 0.621469 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF STGGRA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      STGGRA     TYCCAS        266        135   5.8e-016   1.8e-011
#           CTGGAA     TTCCAG        101         42   8.4e-008   2.6e-003
#           CTGGGA     TCCCAG        106         49   5.7e-007   1.7e-002
#           GTGGGA     TCCCAC         59         32   2.2e-003   6.7e+001
#           GTGGAA     TTCCAC         45         22   2.7e-003   8.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 340 E= 1.8e-011
0.000000 0.685294 0.314706 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.467647 0.000000 0.532353 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGGMG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGGMG   CKCCCTCT         43          9   6.2e-007   1.9e-002
#         AGAGGGAG   CTCCCTCT         31          7   4.6e-005   1.4e+000
#         AGAGGGCG   CGCCCTCT         14          2   2.0e-003   5.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.9e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.702128 0.297872 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 15.67 seconds