******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr13:44435433-44435933 1.0000 100 chr2:120253089-120253589 1.0000 100 chr10:72059389-72059889 1.0000 100 chr5:123809793-123810293 1.0000 100 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chr3:53347626-53348126 1.0000 100 chr5:159098259-159098759 1.0000 100 chr16:28822591-28823091 1.0000 100 chr20:63846445-63846945 1.0000 100 chr22:50342606-50343106 1.0000 100 chr18:75206720-75207220 1.0000 100 chr11:62591398-62591898 1.0000 100 chr16:85172370-85172870 1.0000 100 chr17:41527321-41527821 1.0000 100 chr13:20482349-20482849 1.0000 100 chr19:6209479-6209979 1.0000 100 chr18:54223614-54224114 1.0000 100 chr1:84078514-84079014 1.0000 100 chr4:48780206-48780706 1.0000 100 chr1:28417004-28417504 1.0000 100 chr15:90857674-90858174 1.0000 100 chr7:116220311-116220811 1.0000 100 chr21:37253898-37254398 1.0000 100 chr10:121573027-12157352 1.0000 100 chrX:154383990-154384490 1.0000 100 chr19:48836347-48836847 1.0000 100 chr17:1180189-1180689 1.0000 100 chr1:231338705-231339205 1.0000 100 chr6:90369183-90369683 1.0000 100 chr17:82458700-82459200 1.0000 100 chr2:175181554-175182054 1.0000 100 chr14:49586811-49587311 1.0000 100 chr6:1616912-1617412 1.0000 100 chr10:93993125-93993625 1.0000 100 chr1:164587922-164588422 1.0000 100 chr4:38318842-38319342 1.0000 100 chr21:36134340-36134840 1.0000 100 chr12:45726733-45727233 1.0000 100 chr22:42553696-42554196 1.0000 100 chr17:74987533-74988033 1.0000 100 chr9:125888881-125889381 1.0000 100 chr18:24063933-24064433 1.0000 100 chr12:85833668-85834168 1.0000 100 chr10:71999188-71999688 1.0000 100 chr13:77329256-77329756 1.0000 100 chr5:163460704-163461204 1.0000 100 chr3:196279390-196279890 1.0000 100 chr13:95300099-95300599 1.0000 100 chr12:31368924-31369424 1.0000 100 chr15:67915752-67916252 1.0000 100 chr10:15817769-15818269 1.0000 100 chr22:29040549-29041049 1.0000 100 chr2:176135084-176135584 1.0000 100 chr10:27240482-27240982 1.0000 100 chr14:77581113-77581613 1.0000 100 chr14:28754431-28754931 1.0000 100 chr12:19234271-19234771 1.0000 100 chr19:3045510-3046010 1.0000 100 chr21:31219194-31219694 1.0000 100 chr1:226110408-226110908 1.0000 100 chrX:129987012-129987512 1.0000 100 chr14:23286398-23286898 1.0000 100 chr10:8053428-8053928 1.0000 100 chr8:22095339-22095839 1.0000 100 chr4:169267241-169267741 1.0000 100 chr6:31578538-31579038 1.0000 100 chr22:23894955-23895455 1.0000 100 chr1:32775441-32775941 1.0000 100 chr7:2632577-2633077 1.0000 100 chr5:115815483-115815983 1.0000 100 chr13:35476786-35477286 1.0000 100 chr4:168641903-168642403 1.0000 100 chr6:125231199-125231699 1.0000 100 chr2:61017187-61017687 1.0000 100 chr6:26321902-26322402 1.0000 100 chr20:2470832-2471332 1.0000 100 chr5:98774603-98775103 1.0000 100 chr1:39507127-39507627 1.0000 100 chr5:68215701-68216201 1.0000 100 chr12:52945963-52946463 1.0000 100 chr1:152036498-152036998 1.0000 100 chr6:124097807-124098307 1.0000 100 chr3:195205003-195205503 1.0000 100 chr6:16136391-16136891 1.0000 100 chr2:158967710-158968210 1.0000 100 chr10:120981809-12098230 1.0000 100 chr1:92080504-92081004 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.225 C 0.275 G 0.275 T 0.225 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/IKZF3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.230 C 0.270 G 0.270 T 0.230 ******************************************************************************** ******************************************************************************** MOTIF GVGSSGGGGCGGSRGCSGSGGS MEME-1 width = 22 sites = 124 llr = 1191 E-value = 9.9e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:12:211:2:13:::::11: pos.-specific C 2324433:263152:7324124 probability G 7475375873695591565875 matrix T 111:2::1:1::::1221:::1 bits 2.1 1.9 1.7 1.5 Relative 1.3 * * Entropy 1.1 * * (13.9 bits) 0.8 * * * * * 0.6 * * * ****** ** **** 0.4 * ** ***************** 0.2 **** ***************** 0.0 ---------------------- Multilevel GGGGCGGGGCGGCGGCGGGGGG consensus CCCCGCC CGC GA CCC CC sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr15:66293472-66293972 + 68 1.45e-09 gccACGGTCA gggccggggcgggggcggggac ggggccggcg chr10:50991032-50991532 - 79 6.03e-09 . CGGCGGCGGCGGCGGCGGCGGC TGGGACGGCA chr6:7725936-7726436 - 26 1.13e-08 CTAGTGCACC GAGCAGCGGCCGCGGCGGCGGC GCCGGAATTC chr9:97803304-97803804 - 49 2.05e-08 GCCCGGGAGC GGGGACGGGGCGGGGCGGCGGG GGCGGTGACG chr1:40373398-40373898 + 50 3.61e-08 AGAGCCCAGT gcggcgcggtgggggcggggcg catgcgcgag chr1:243254635-243255135 - 73 4.36e-08 CCGCCC GCCGCGGGGCGGGGGTGCGGGG CTGGACCGCG chr1:46489640-46490140 + 4 5.21e-08 TGG CAGCGGAGGCGGCggcgcgggc cggggtgacc chr17:15999655-16000155 + 39 7.39e-08 CTTCCTGCGG GCCGCGGGGCGGCGGTGCCGGG GCTGCTCCGC chr1:184036836-184037336 - 24 8.78e-08 AGCGCGCACG GGCCCCGGGCCGCCGCGGCGGG ACGCGGGGGC chr7:157010329-157010829 - 10 1.22e-07 GAGTTTGTGC GAGCGCGGCCCGGGGCGGGGCC CGCACGGAG chr9:125746338-125746838 + 14 1.22e-07 CGGGCCCcgg gggcggtgccggcggcggcggc ggGAGGCGCA chr2:60881323-60881823 - 59 1.69e-07 CGGGAGCCAG GGGCAGGGGGCGGAGCGGGGAG AGCCGAGTGC chr1:20731872-20732372 - 23 2.32e-07 ACGTGTGGGG GCGCGGGGACCGGGGTCGGGGG CGGCGGGAAG chr5:177133354-177133854 + 1 2.71e-07 . gggagggggcggcagcggcagc TCCGCTGATT chr2:176092648-176093148 + 45 4.25e-07 gccgggccat gagccgcgccgggagctgggac atggacgggc chr11:46382253-46382753 + 77 4.25e-07 GGCGGACCCT Tggcggagggcggggccgcggg cc chr10:133308894-13330939 + 60 4.91e-07 CTACGGCGGC GAGGCGGGGCCGGAGCCTGGAG TGGGAGGGGC chr1:111619848-111620348 + 18 5.67e-07 CGTTCCATCG GTGTCGGGGCGGCGGCCCGGGG GCCTGGCCGG chr4:4859488-4859988 + 68 6.54e-07 CTGGCCTGCT GGGGAGGGGCGGGAGGCGCGCG CGGGAGGGTC chr8:102656238-102656738 - 24 6.54e-07 GAAGGATGGG CGGGGCGGGCAGGCGCTGCGGG CGCTGCAGAT chr19:2841514-2842014 - 6 7.52e-07 CGCGACCTCA GCGCGGGAGGCGGGGCCGGGCG GGACC chr15:56243758-56244258 + 24 8.63e-07 tgggggcgca cggcgcggagggcggCGCGGGC CAGCGGGCCA chr10:125822920-12582342 - 47 8.63e-07 TCCTGGGGCC CGGCGCGGGTGGCCGCCGCGGC CCCTCGGGCT chr4:143336163-143336663 + 5 8.63e-07 ggag gcggcgggggaggagcgcgagg ggacgggaCA chr6:38639659-38640159 - 45 8.63e-07 CGCGCCGCAG CAGCCGGGGCGGCGGCGAGGAC GGCGGCCACG chr10:5977917-5978417 - 4 1.13e-06 GGGCCCCAGC GGGCGCCGGGGGCCGCGGGAGC CAG chr16:30534392-30534892 + 31 1.13e-06 CCCGGGGAGG GAGCGGGGCCAGAGGCGGCGCC ATGGGGACTG chr6:71288498-71288998 + 38 1.13e-06 CGGGTTCAGG CGCGCGCGGCGGCGGTCCCGGG GCCGCCGGCT chr13:27620899-27621399 + 7 1.29e-06 GAAAGG TTGCCGAGGCGGGGGCTGGGCG CCTGGGAACA chr19:50384416-50384916 + 19 1.48e-06 GGGGCGGGAC GTGGCCCGGGAGGAGCTGGGGG GACTGGGTGG chr10:94402607-94403107 + 32 1.68e-06 TTACCTCGCG GCGGCCGGGGAGCAGCTGGAGC CGGGGCTCTG chr5:80408293-80408793 - 2 1.68e-06 AGCCCCTCCC CAGGCGGGACGGCGGCGCCAGG G chr2:241315098-241315598 - 30 1.68e-06 CGACTGGGCG GGGGACGGCGAGCGGCCGCGCG AAACTCGTCT chr6:110814584-110815084 + 44 1.68e-06 ACGCGACGGG GCCGCGCGGGGGAGGCGGGCGG AACGGGCGCC chr1:211577585-211578085 + 73 1.68e-06 AGGACGGGGA GGGAGCAGGCAGGGGCGGCGCG GCGCAG chr5:72955963-72956463 + 38 1.91e-06 GGCCTGCGTG CGCTTCGGGCGGCGGCGGCGGC CCCTCCGGCA chr6:31581032-31581532 + 25 1.91e-06 TGCGGGAGCC GAGCCGGGCCGGGGGAGGAGGG ATGGTGCTGT chr2:203328159-203328659 - 46 2.17e-06 GGGAGAGGAG GAGCGGCGGCGACGGCGGCGGT AACTCGGAAG chr7:101217482-101217982 + 56 2.78e-06 CTAGGAGTCC GCCGCGGGACGGAGGCCTGGGG GAACTGGGAG chr12:131928525-13192902 + 51 3.14e-06 gaccgctgga gcccggaggcggaggcTGCGGT GAGCCGTGAC chr19:850671-851171 - 46 3.54e-06 AAGCCCTCCC CGCCTGAGGCAGGGGCTGGGCG GGCATCTGGC chrX:133415695-133416195 - 40 3.54e-06 AGCGTCCGCG GGTGCGGGATGGCAGCGGGGAG GCGGATATCG chr7:101163013-101163513 + 76 3.99e-06 TCCGGCAGCT CGTCTCGTgcgggagcgggggc ggg chr1:31413312-31413812 - 7 3.99e-06 GCGGAAACCC GAGCCGGGACCGCAGCTGCCCG GCGCCT chr2:199455718-199456218 - 54 4.49e-06 ACAGCCCCGA CCGGCGGAGCGGCAGCCCGGAC GTCAAGGGGC chr1:47996513-47997013 + 13 4.49e-06 TCcgggggct gcgggcgggcgcgagcggtggc gaggagggcg chr10:8053428-8053928 + 74 5.05e-06 GTGGAGTCCC GACCAGAGGCCGGGGTTGGGGT CGGTG chr12:131928743-13192924 + 26 5.05e-06 CGGCAACGGA GAGGAGCGGGGCCAGCGTGGGC TCAGCGCTTC chr11:79440782-79441282 + 71 5.05e-06 CCAATCCTAC GAGGCCGGCGAGCCGCGCGGCG CACTGGCG chr16:740746-741246 - 43 5.66e-06 TAGCGACACC TGCGCGCGGCGGCAGTGCGGCC GTCATGGCGT chr1:230067666-230068166 + 73 5.66e-06 TACCTTTGGG GGGCAGGGGCGGCCGCTCCCGT GCCAAG chr1:89821136-89821636 + 53 5.66e-06 CCTGGCGCAG GCGCCGCGGCCCGAGCTGCGGT TGCGGCCGGG chr5:68215701-68216201 + 79 6.35e-06 CCGGGTGTGT GTGCTCGGGCGGGGGAGGCGGT chr17:15944862-15945362 + 76 7.10e-06 TCAGAAGCGG CAGGCGGAGGCGCGGTCCGGGC GCT chr22:39171563-39172063 + 3 7.10e-06 AG GGGCAGGTGCGCGAGCGGCGCC GGATGGAGGA chr12:111841890-11184239 + 53 7.10e-06 GAGTCACGAA GCTGGGCGGCAGGAGGGGCGGC CTGGAGCTCC chr22:38454775-38455275 + 70 7.94e-06 CAAGGCGCGA TCCGGCGGGCGGCGTCCCGGGC GCGGAAAGG chr7:128267200-128267700 + 10 7.94e-06 CTGTGTTTT CCCAGGGGATGGGGGCGGGGGC CAGAGAAATT chr7:2632577-2633077 - 44 8.87e-06 ACCGGCCACA GAGGGCTGGCGGCGGCCCAGGC CATTCACCCA chr6:3068531-3069031 - 67 8.87e-06 GCCCGGGTGA GGGAAGAAGCGGCGGCGGAGGG TTGGGGATTA chr6:30213081-30213581 - 40 1.10e-05 AGAGAGGAGG GGTGCCGGCCGGGATTCGCGGC CCGGAGCTCG chr8:124998684-124999184 - 17 1.22e-05 CCTAGCCTCT GGCGACGGCGAGCAGCGGCCGG AAGGCACGGG chr12:53492953-53493453 + 57 1.22e-05 ACGTGAGCGC GACGTGGGGGCggggctgtgcc tgggccccgc chr19:7501079-7501579 - 75 1.36e-05 CGAG GCTGCGGGCGCGCGTCGTGGGG TGGAAAGAGC chr10:69318549-69319049 - 44 1.51e-05 CCCTCGGCCC GGGGCGCGGCGACAGCTCGCGC GCTCCCGGTC chr11:125569236-12556973 + 42 1.51e-05 GGCATGCCCA GTGCGGGCGCAGCGGCCCCGGC CCTGGAAGCG chr2:120253089-120253589 + 38 1.51e-05 CACTTCCTCA GTCCTCCGGCCGCGGCTTGGGC AGGGTCAGGG chr17:82458700-82459200 + 75 1.67e-05 GGCCCGCTCG GCGTGGAGGCGGCCGGCGCGGG GTCC chr12:4809380-4809880 + 13 1.67e-05 TCTGGCGCTT CGGTACCAGCGGCAGCCGGGGG TCCGGAGCGG chr5:132410434-132410934 - 53 1.67e-05 CACACCTGCC TCGGCGGGACCCGGGCCCGGGC TGGGCGGGAG chr1:168178669-168179169 + 63 1.67e-05 AGCCCGCGTC CGGGTCGGCCGGCAGGGGGCGG GGCCGGGCAT chr22:50342606-50343106 + 33 1.85e-05 AGGCAGGACG CGGGACGGGGAGGGGCCAGGCC TGGCGCCCGG chr20:63846445-63846945 + 71 1.85e-05 GCAGGGAGTG GGGAGGAGGGAGGAGCTGCAGC TGCCGTCC chr4:2417657-2418157 + 57 1.85e-05 TAGGGGGTCT GCTCCGGGCCCGCGGGCTGGGG ACCACGAAGT chr1:32716520-32717020 - 63 1.85e-05 CCTCTCTCCA GAGCTGGGGGAGGGGACAGGGC AGGGCTTACC chr11:33735953-33736453 + 52 1.85e-05 GTTCGGCTAG GACACCGGGCCGCGGTGACGGG TTGGAAGGGC chr17:1829851-1830351 + 1 1.85e-05 . GAGCTGTTGCGGGGTCCGCGGG GAAGTCTTGG chr1:45012668-45013168 - 14 2.05e-05 CTGAGGTCTG GCGATCAGGTGGGGGTGGGGGT AGGTGTCAGT chr19:40425491-40425991 + 70 2.05e-05 CGTGCGTCTC GATCCCGGGCAGCCCCGGCGGG CACCTGTCG chr14:69153212-69153712 - 15 2.05e-05 ATTCAACTCC GCGGAGTGCGGGGCGCTGGGGT GCAGAGGGGT chr16:53054902-53055402 + 73 2.27e-05 GCAGAGATAA CCGGAGGAGTCGGGGCGGCAGC ACGTGT chr1:151190001-151190501 + 10 2.27e-05 GCGGGTGGC CACCAGCGGCGGAAGTCGGGCG TTTACAGGCA chr3:195259732-195260232 - 17 2.27e-05 CGGGGCCGAG CCGCTGGGACGGGCGATGCGGC AGCACGGTCG chr17:31550037-31550537 + 34 2.50e-05 CTCCTGCCCC GGGCTCCGCGGTCGGCGGGGGC CGGTGCACCT chr9:132354376-132354876 - 14 2.76e-05 AGTTTCCTTG GGGCTGAGCGGGAGGTCTCGGG GTGGAAAGTG chr17:35795518-35796018 - 36 3.04e-05 CCGATCCGCA GGGCGGTGGCGGGCGCAGGGCG AGGCTGTGCA chr13:77329256-77329756 + 67 3.34e-05 AGGCTCCCCT GGGATGGCGGGGGAGTGGGGCG CATGCCAGAA chr1:155017436-155017936 - 50 3.34e-05 CTCGCTCCAG TGGCCGCGGGGGGCGCTCGCCC ACTCAGAGCA chr8:38231582-38232082 + 75 3.34e-05 GCGGGGCCGC CAGGTGAGACCGCGTCGGGCGG GCGG chr17:74987533-74988033 - 39 3.67e-05 AAGGGTGGAG TGGCAGGGACGGCGGGTGGGAC AGTGGCAAGG chr17:4739590-4740090 + 17 3.67e-05 CACTTTCACT TCCCCGATCCGGGCGCCGCGGG ACCCAGCCGC chr4:139557106-139557606 - 23 4.43e-05 CGACACTAAG TGGCCGGGCCGGAAGCCGGGTG CCCAATGGTT chr1:226309447-226309947 - 79 4.43e-05 . GATCGCGAGGGGCCGCTGGGAC CGAGTCCCGG chr17:82030701-82031201 + 37 4.43e-05 GCGGCGACTG TTGGTGGTGTCGCGGCTGCGGG GGAACCCCGT chr2:158967710-158968210 + 34 4.85e-05 GCAGACAGCA CGGGCCAGCCCGGAGCGGTCGC AGGAGGCTCC chr11:114036178-11403667 + 7 4.85e-05 GGGGAC GCCGCAAGGGGGCAGGGGCGGC CTGCTGGCAA chr11:2902280-2902780 + 35 5.31e-05 GGATGGGGGA GGGCGCCAGGCGCAGCTCCCGG ACCCTCAGGG chr12:49018677-49019177 - 36 5.31e-05 CCGGATCCGT GCGGTCCGCGAGGACCCGGGGG AGGGCGGTTA chr12:45726733-45727233 - 33 5.81e-05 GCGGACTCCG GCGGCCCTGGCGGGTCGCGGCC GGGATCCGAG chr12:111597592-11159809 - 68 5.81e-05 GGACCCTGGA GATCCGGGGTGGCGGTGCTGGT GGCAGGGGGC chr2:48314777-48315277 + 2 6.35e-05 T GCGCCGGCGCGGGGGTGTCCCC GGCGCGCGTA chr21:43719168-43719668 + 17 6.35e-05 GCTGCAGGTA CGCATCCGCCCGCAGCCCGGGC TTACGTAACC chr1:98661742-98662242 - 32 6.35e-05 AGGGCAAGCG CGCCAGAGGCAGCCGTCGGCGC AATGCTGGCA chr10:27240482-27240982 - 43 6.93e-05 GGGTCCCCAG GGTGGGAGAGCGGCTCCGCGGC CACCGATGCC chr15:90320094-90320594 - 65 6.93e-05 ATAGTGCTGG GGCTGGCGGCGGGCTTGCGGGG CGAGGCTTTG chr14:58426677-58427177 + 71 6.93e-05 CTGCTCCAGG TACGTGCGGCGGCCTCCTCGGG AGACCCCG chr1:1349668-1350168 + 28 6.93e-05 GCTTACTGTT CCGGGGCTCGCGGGGCTGGAGG CCTTCCCGAC chr19:41264352-41264852 + 78 6.93e-05 CGAGGAGCCT GACGACGAGCGGGAGCTCGACG C chr1:161045703-161046203 + 65 7.56e-05 CGGCCATGTT GGTGAGGGGCGGAAGTGTCGCT CTCGCCCCGC chr6:170290630-170291130 + 59 7.56e-05 CGCTCTGCCC TCGGCCGGGTCGGGTCTCCGCG GGTGCGCGCA chr12:122966123-12296662 - 52 9.77e-05 GGGAAGAGCG GAGCGAGGACCGCGTCCGGCGC AGTCTTCAAT chr1:226110408-226110908 + 41 1.06e-04 TCCGGAGCCA CGCGCGGGGCGAAAGAGGCGGC CCCGGATGCT chr2:97113095-97113595 + 59 1.36e-04 AGGGCCCAGC GCGGGGGACTCCGAGCGTCGGG AGCCTGTGGA chr5:154857290-154857790 + 1 1.36e-04 . GAGGGCGGCCCGCCGCCGACAC TGTGTGCAGG chr6:32894412-32894912 - 60 1.47e-04 CAATCAGGGC TCGGCGCCGTGGAGGCGGGAGG AACGCTGTAG chr12:12786838-12787338 - 66 1.47e-04 CTGAGCGAGA GCCCCACGATGGCGGCGAGGGC GCCCGTTGCG chr17:80415306-80415806 + 64 1.59e-04 AGAGGCGCTC TGTCCGCTGCAGCCGCGCGGGT GGAGGAGGCA chr19:911647-912147 + 75 1.72e-04 GACAAGCCCA GAGGGCGAGTGGGGCCGGGCGT GCGG chr1:100895844-100896344 + 29 2.17e-04 CCCAGGACGC GTTGCGCGGCCCGGGCCGGAAG TAAGCGAATT chr11:7252606-7253106 + 37 2.52e-04 AGAAGGGCGG GACGCGATCCGGCGTTGGGCCG GGGACAGGGT chr17:1180189-1180689 + 12 2.71e-04 GGGTGAACGT CCTGCGCGCCGCGGGACGCGCC TCTCTCCTCC chr1:110407489-110407989 + 6 2.71e-04 CACTT GACGCGAGCGGGGCGTGGACCG TAACGGCGCC chr3:53347626-53348126 + 40 2.92e-04 AGGTTGGAGA CCGCCGAAGTGCCGGCCTCGCG GTGCGCTGTC chr16:28822591-28823091 - 6 3.14e-04 AGTGGGTAAG GAGCGGCGCGGGCGCTCACGCG CGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:66293472-66293972 1.5e-09 67_[+1]_11 chr10:50991032-50991532 6e-09 78_[-1] chr6:7725936-7726436 1.1e-08 25_[-1]_53 chr9:97803304-97803804 2.1e-08 48_[-1]_30 chr1:40373398-40373898 3.6e-08 49_[+1]_29 chr1:243254635-243255135 4.4e-08 72_[-1]_6 chr1:46489640-46490140 5.2e-08 3_[+1]_75 chr17:15999655-16000155 7.4e-08 38_[+1]_40 chr1:184036836-184037336 8.8e-08 23_[-1]_55 chr7:157010329-157010829 1.2e-07 9_[-1]_69 chr9:125746338-125746838 1.2e-07 13_[+1]_65 chr2:60881323-60881823 1.7e-07 58_[-1]_20 chr1:20731872-20732372 2.3e-07 22_[-1]_56 chr5:177133354-177133854 2.7e-07 [+1]_78 chr2:176092648-176093148 4.2e-07 44_[+1]_34 chr11:46382253-46382753 4.2e-07 76_[+1]_2 chr10:133308894-13330939 4.9e-07 59_[+1]_19 chr1:111619848-111620348 5.7e-07 17_[+1]_61 chr4:4859488-4859988 6.5e-07 67_[+1]_11 chr8:102656238-102656738 6.5e-07 23_[-1]_55 chr19:2841514-2842014 7.5e-07 5_[-1]_73 chr15:56243758-56244258 8.6e-07 23_[+1]_55 chr10:125822920-12582342 8.6e-07 46_[-1]_32 chr4:143336163-143336663 8.6e-07 4_[+1]_74 chr6:38639659-38640159 8.6e-07 44_[-1]_34 chr10:5977917-5978417 1.1e-06 3_[-1]_75 chr16:30534392-30534892 1.1e-06 30_[+1]_48 chr6:71288498-71288998 1.1e-06 37_[+1]_41 chr13:27620899-27621399 1.3e-06 6_[+1]_72 chr19:50384416-50384916 1.5e-06 18_[+1]_60 chr10:94402607-94403107 1.7e-06 31_[+1]_47 chr5:80408293-80408793 1.7e-06 1_[-1]_77 chr2:241315098-241315598 1.7e-06 29_[-1]_49 chr6:110814584-110815084 1.7e-06 43_[+1]_35 chr1:211577585-211578085 1.7e-06 72_[+1]_6 chr5:72955963-72956463 1.9e-06 37_[+1]_41 chr6:31581032-31581532 1.9e-06 24_[+1]_54 chr2:203328159-203328659 2.2e-06 45_[-1]_33 chr7:101217482-101217982 2.8e-06 55_[+1]_23 chr12:131928525-13192902 3.1e-06 50_[+1]_28 chr19:850671-851171 3.5e-06 45_[-1]_33 chrX:133415695-133416195 3.5e-06 39_[-1]_39 chr7:101163013-101163513 4e-06 75_[+1]_3 chr1:31413312-31413812 4e-06 6_[-1]_72 chr2:199455718-199456218 4.5e-06 53_[-1]_25 chr1:47996513-47997013 4.5e-06 12_[+1]_66 chr10:8053428-8053928 5e-06 73_[+1]_5 chr12:131928743-13192924 5e-06 25_[+1]_53 chr11:79440782-79441282 5e-06 70_[+1]_8 chr16:740746-741246 5.7e-06 42_[-1]_36 chr1:230067666-230068166 5.7e-06 72_[+1]_6 chr1:89821136-89821636 5.7e-06 52_[+1]_26 chr5:68215701-68216201 6.3e-06 78_[+1] chr17:15944862-15945362 7.1e-06 75_[+1]_3 chr22:39171563-39172063 7.1e-06 2_[+1]_76 chr12:111841890-11184239 7.1e-06 52_[+1]_26 chr22:38454775-38455275 7.9e-06 69_[+1]_9 chr7:128267200-128267700 7.9e-06 9_[+1]_69 chr7:2632577-2633077 8.9e-06 43_[-1]_35 chr6:3068531-3069031 8.9e-06 66_[-1]_12 chr6:30213081-30213581 1.1e-05 39_[-1]_39 chr8:124998684-124999184 1.2e-05 16_[-1]_62 chr12:53492953-53493453 1.2e-05 56_[+1]_22 chr19:7501079-7501579 1.4e-05 74_[-1]_4 chr10:69318549-69319049 1.5e-05 43_[-1]_35 chr11:125569236-12556973 1.5e-05 41_[+1]_37 chr2:120253089-120253589 1.5e-05 37_[+1]_41 chr17:82458700-82459200 1.7e-05 74_[+1]_4 chr12:4809380-4809880 1.7e-05 12_[+1]_66 chr5:132410434-132410934 1.7e-05 52_[-1]_26 chr1:168178669-168179169 1.7e-05 62_[+1]_16 chr22:50342606-50343106 1.9e-05 32_[+1]_46 chr20:63846445-63846945 1.9e-05 70_[+1]_8 chr4:2417657-2418157 1.9e-05 56_[+1]_22 chr1:32716520-32717020 1.9e-05 62_[-1]_16 chr11:33735953-33736453 1.9e-05 51_[+1]_27 chr17:1829851-1830351 1.9e-05 [+1]_78 chr1:45012668-45013168 2.1e-05 13_[-1]_65 chr19:40425491-40425991 2.1e-05 69_[+1]_9 chr14:69153212-69153712 2.1e-05 14_[-1]_64 chr16:53054902-53055402 2.3e-05 72_[+1]_6 chr1:151190001-151190501 2.3e-05 9_[+1]_69 chr3:195259732-195260232 2.3e-05 16_[-1]_62 chr17:31550037-31550537 2.5e-05 33_[+1]_45 chr9:132354376-132354876 2.8e-05 13_[-1]_65 chr17:35795518-35796018 3e-05 35_[-1]_43 chr13:77329256-77329756 3.3e-05 66_[+1]_12 chr1:155017436-155017936 3.3e-05 49_[-1]_29 chr8:38231582-38232082 3.3e-05 74_[+1]_4 chr17:74987533-74988033 3.7e-05 38_[-1]_40 chr17:4739590-4740090 3.7e-05 16_[+1]_62 chr4:139557106-139557606 4.4e-05 22_[-1]_56 chr1:226309447-226309947 4.4e-05 78_[-1] chr17:82030701-82031201 4.4e-05 36_[+1]_42 chr2:158967710-158968210 4.9e-05 33_[+1]_45 chr11:114036178-11403667 4.9e-05 6_[+1]_72 chr11:2902280-2902780 5.3e-05 34_[+1]_44 chr12:49018677-49019177 5.3e-05 35_[-1]_43 chr12:45726733-45727233 5.8e-05 32_[-1]_46 chr12:111597592-11159809 5.8e-05 67_[-1]_11 chr2:48314777-48315277 6.3e-05 1_[+1]_77 chr21:43719168-43719668 6.3e-05 16_[+1]_62 chr1:98661742-98662242 6.3e-05 31_[-1]_47 chr10:27240482-27240982 6.9e-05 42_[-1]_36 chr15:90320094-90320594 6.9e-05 64_[-1]_14 chr14:58426677-58427177 6.9e-05 70_[+1]_8 chr1:1349668-1350168 6.9e-05 27_[+1]_51 chr19:41264352-41264852 6.9e-05 77_[+1]_1 chr1:161045703-161046203 7.6e-05 64_[+1]_14 chr6:170290630-170291130 7.6e-05 58_[+1]_20 chr12:122966123-12296662 9.8e-05 51_[-1]_27 chr1:226110408-226110908 0.00011 40_[+1]_38 chr2:97113095-97113595 0.00014 58_[+1]_20 chr5:154857290-154857790 0.00014 [+1]_78 chr6:32894412-32894912 0.00015 59_[-1]_19 chr12:12786838-12787338 0.00015 65_[-1]_13 chr17:80415306-80415806 0.00016 63_[+1]_15 chr19:911647-912147 0.00017 74_[+1]_4 chr1:100895844-100896344 0.00022 28_[+1]_50 chr11:7252606-7253106 0.00025 36_[+1]_42 chr17:1180189-1180689 0.00027 11_[+1]_67 chr1:110407489-110407989 0.00027 5_[+1]_73 chr3:53347626-53348126 0.00029 39_[+1]_39 chr16:28822591-28823091 0.00031 5_[-1]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVGSSGGGGCGGSRGCSGSGGS width=22 seqs=124 chr15:66293472-66293972 ( 68) GGGCCGGGGCGGGGGCGGGGAC 1 chr10:50991032-50991532 ( 79) CGGCGGCGGCGGCGGCGGCGGC 1 chr6:7725936-7726436 ( 26) GAGCAGCGGCCGCGGCGGCGGC 1 chr9:97803304-97803804 ( 49) GGGGACGGGGCGGGGCGGCGGG 1 chr1:40373398-40373898 ( 50) GCGGCGCGGTGGGGGCGGGGCG 1 chr1:243254635-243255135 ( 73) GCCGCGGGGCGGGGGTGCGGGG 1 chr1:46489640-46490140 ( 4) CAGCGGAGGCGGCGGCGCGGGC 1 chr17:15999655-16000155 ( 39) GCCGCGGGGCGGCGGTGCCGGG 1 chr1:184036836-184037336 ( 24) GGCCCCGGGCCGCCGCGGCGGG 1 chr7:157010329-157010829 ( 10) GAGCGCGGCCCGGGGCGGGGCC 1 chr9:125746338-125746838 ( 14) GGGCGGTGCCGGCGGCGGCGGC 1 chr2:60881323-60881823 ( 59) GGGCAGGGGGCGGAGCGGGGAG 1 chr1:20731872-20732372 ( 23) GCGCGGGGACCGGGGTCGGGGG 1 chr5:177133354-177133854 ( 1) GGGAGGGGGCGGCAGCGGCAGC 1 chr2:176092648-176093148 ( 45) GAGCCGCGCCGGGAGCTGGGAC 1 chr11:46382253-46382753 ( 77) TGGCGGAGGGCGGGGCCGCGGG 1 chr10:133308894-13330939 ( 60) GAGGCGGGGCCGGAGCCTGGAG 1 chr1:111619848-111620348 ( 18) GTGTCGGGGCGGCGGCCCGGGG 1 chr4:4859488-4859988 ( 68) GGGGAGGGGCGGGAGGCGCGCG 1 chr8:102656238-102656738 ( 24) CGGGGCGGGCAGGCGCTGCGGG 1 chr19:2841514-2842014 ( 6) GCGCGGGAGGCGGGGCCGGGCG 1 chr15:56243758-56244258 ( 24) CGGCGCGGAGGGCGGCGCGGGC 1 chr10:125822920-12582342 ( 47) CGGCGCGGGTGGCCGCCGCGGC 1 chr4:143336163-143336663 ( 5) GCGGCGGGGGAGGAGCGCGAGG 1 chr6:38639659-38640159 ( 45) CAGCCGGGGCGGCGGCGAGGAC 1 chr10:5977917-5978417 ( 4) GGGCGCCGGGGGCCGCGGGAGC 1 chr16:30534392-30534892 ( 31) GAGCGGGGCCAGAGGCGGCGCC 1 chr6:71288498-71288998 ( 38) CGCGCGCGGCGGCGGTCCCGGG 1 chr13:27620899-27621399 ( 7) TTGCCGAGGCGGGGGCTGGGCG 1 chr19:50384416-50384916 ( 19) GTGGCCCGGGAGGAGCTGGGGG 1 chr10:94402607-94403107 ( 32) GCGGCCGGGGAGCAGCTGGAGC 1 chr5:80408293-80408793 ( 2) CAGGCGGGACGGCGGCGCCAGG 1 chr2:241315098-241315598 ( 30) GGGGACGGCGAGCGGCCGCGCG 1 chr6:110814584-110815084 ( 44) GCCGCGCGGGGGAGGCGGGCGG 1 chr1:211577585-211578085 ( 73) GGGAGCAGGCAGGGGCGGCGCG 1 chr5:72955963-72956463 ( 38) CGCTTCGGGCGGCGGCGGCGGC 1 chr6:31581032-31581532 ( 25) GAGCCGGGCCGGGGGAGGAGGG 1 chr2:203328159-203328659 ( 46) GAGCGGCGGCGACGGCGGCGGT 1 chr7:101217482-101217982 ( 56) GCCGCGGGACGGAGGCCTGGGG 1 chr12:131928525-13192902 ( 51) GCCCGGAGGCGGAGGCTGCGGT 1 chr19:850671-851171 ( 46) CGCCTGAGGCAGGGGCTGGGCG 1 chrX:133415695-133416195 ( 40) GGTGCGGGATGGCAGCGGGGAG 1 chr7:101163013-101163513 ( 76) CGTCTCGTGCGGGAGCGGGGGC 1 chr1:31413312-31413812 ( 7) GAGCCGGGACCGCAGCTGCCCG 1 chr2:199455718-199456218 ( 54) CCGGCGGAGCGGCAGCCCGGAC 1 chr1:47996513-47997013 ( 13) GCGGGCGGGCGCGAGCGGTGGC 1 chr10:8053428-8053928 ( 74) GACCAGAGGCCGGGGTTGGGGT 1 chr12:131928743-13192924 ( 26) GAGGAGCGGGGCCAGCGTGGGC 1 chr11:79440782-79441282 ( 71) GAGGCCGGCGAGCCGCGCGGCG 1 chr16:740746-741246 ( 43) TGCGCGCGGCGGCAGTGCGGCC 1 chr1:230067666-230068166 ( 73) GGGCAGGGGCGGCCGCTCCCGT 1 chr1:89821136-89821636 ( 53) GCGCCGCGGCCCGAGCTGCGGT 1 chr5:68215701-68216201 ( 79) GTGCTCGGGCGGGGGAGGCGGT 1 chr17:15944862-15945362 ( 76) CAGGCGGAGGCGCGGTCCGGGC 1 chr22:39171563-39172063 ( 3) GGGCAGGTGCGCGAGCGGCGCC 1 chr12:111841890-11184239 ( 53) GCTGGGCGGCAGGAGGGGCGGC 1 chr22:38454775-38455275 ( 70) TCCGGCGGGCGGCGTCCCGGGC 1 chr7:128267200-128267700 ( 10) CCCAGGGGATGGGGGCGGGGGC 1 chr7:2632577-2633077 ( 44) GAGGGCTGGCGGCGGCCCAGGC 1 chr6:3068531-3069031 ( 67) GGGAAGAAGCGGCGGCGGAGGG 1 chr6:30213081-30213581 ( 40) GGTGCCGGCCGGGATTCGCGGC 1 chr8:124998684-124999184 ( 17) GGCGACGGCGAGCAGCGGCCGG 1 chr12:53492953-53493453 ( 57) GACGTGGGGGCGGGGCTGTGCC 1 chr19:7501079-7501579 ( 75) GCTGCGGGCGCGCGTCGTGGGG 1 chr10:69318549-69319049 ( 44) GGGGCGCGGCGACAGCTCGCGC 1 chr11:125569236-12556973 ( 42) GTGCGGGCGCAGCGGCCCCGGC 1 chr2:120253089-120253589 ( 38) GTCCTCCGGCCGCGGCTTGGGC 1 chr17:82458700-82459200 ( 75) GCGTGGAGGCGGCCGGCGCGGG 1 chr12:4809380-4809880 ( 13) CGGTACCAGCGGCAGCCGGGGG 1 chr5:132410434-132410934 ( 53) TCGGCGGGACCCGGGCCCGGGC 1 chr1:168178669-168179169 ( 63) CGGGTCGGCCGGCAGGGGGCGG 1 chr22:50342606-50343106 ( 33) CGGGACGGGGAGGGGCCAGGCC 1 chr20:63846445-63846945 ( 71) GGGAGGAGGGAGGAGCTGCAGC 1 chr4:2417657-2418157 ( 57) GCTCCGGGCCCGCGGGCTGGGG 1 chr1:32716520-32717020 ( 63) GAGCTGGGGGAGGGGACAGGGC 1 chr11:33735953-33736453 ( 52) GACACCGGGCCGCGGTGACGGG 1 chr17:1829851-1830351 ( 1) GAGCTGTTGCGGGGTCCGCGGG 1 chr1:45012668-45013168 ( 14) GCGATCAGGTGGGGGTGGGGGT 1 chr19:40425491-40425991 ( 70) GATCCCGGGCAGCCCCGGCGGG 1 chr14:69153212-69153712 ( 15) GCGGAGTGCGGGGCGCTGGGGT 1 chr16:53054902-53055402 ( 73) CCGGAGGAGTCGGGGCGGCAGC 1 chr1:151190001-151190501 ( 10) CACCAGCGGCGGAAGTCGGGCG 1 chr3:195259732-195260232 ( 17) CCGCTGGGACGGGCGATGCGGC 1 chr17:31550037-31550537 ( 34) GGGCTCCGCGGTCGGCGGGGGC 1 chr9:132354376-132354876 ( 14) GGGCTGAGCGGGAGGTCTCGGG 1 chr17:35795518-35796018 ( 36) GGGCGGTGGCGGGCGCAGGGCG 1 chr13:77329256-77329756 ( 67) GGGATGGCGGGGGAGTGGGGCG 1 chr1:155017436-155017936 ( 50) TGGCCGCGGGGGGCGCTCGCCC 1 chr8:38231582-38232082 ( 75) CAGGTGAGACCGCGTCGGGCGG 1 chr17:74987533-74988033 ( 39) TGGCAGGGACGGCGGGTGGGAC 1 chr17:4739590-4740090 ( 17) TCCCCGATCCGGGCGCCGCGGG 1 chr4:139557106-139557606 ( 23) TGGCCGGGCCGGAAGCCGGGTG 1 chr1:226309447-226309947 ( 79) GATCGCGAGGGGCCGCTGGGAC 1 chr17:82030701-82031201 ( 37) TTGGTGGTGTCGCGGCTGCGGG 1 chr2:158967710-158968210 ( 34) CGGGCCAGCCCGGAGCGGTCGC 1 chr11:114036178-11403667 ( 7) GCCGCAAGGGGGCAGGGGCGGC 1 chr11:2902280-2902780 ( 35) GGGCGCCAGGCGCAGCTCCCGG 1 chr12:49018677-49019177 ( 36) GCGGTCCGCGAGGACCCGGGGG 1 chr12:45726733-45727233 ( 33) GCGGCCCTGGCGGGTCGCGGCC 1 chr12:111597592-11159809 ( 68) GATCCGGGGTGGCGGTGCTGGT 1 chr2:48314777-48315277 ( 2) GCGCCGGCGCGGGGGTGTCCCC 1 chr21:43719168-43719668 ( 17) CGCATCCGCCCGCAGCCCGGGC 1 chr1:98661742-98662242 ( 32) CGCCAGAGGCAGCCGTCGGCGC 1 chr10:27240482-27240982 ( 43) GGTGGGAGAGCGGCTCCGCGGC 1 chr15:90320094-90320594 ( 65) GGCTGGCGGCGGGCTTGCGGGG 1 chr14:58426677-58427177 ( 71) TACGTGCGGCGGCCTCCTCGGG 1 chr1:1349668-1350168 ( 28) CCGGGGCTCGCGGGGCTGGAGG 1 chr19:41264352-41264852 ( 78) GACGACGAGCGGGAGCTCGACG 1 chr1:161045703-161046203 ( 65) GGTGAGGGGCGGAAGTGTCGCT 1 chr6:170290630-170291130 ( 59) TCGGCCGGGTCGGGTCTCCGCG 1 chr12:122966123-12296662 ( 52) GAGCGAGGACCGCGTCCGGCGC 1 chr1:226110408-226110908 ( 41) CGCGCGGGGCGAAAGAGGCGGC 1 chr2:97113095-97113595 ( 59) GCGGGGGACTCCGAGCGTCGGG 1 chr5:154857290-154857790 ( 1) GAGGGCGGCCCGCCGCCGACAC 1 chr6:32894412-32894912 ( 60) TCGGCGCCGTGGAGGCGGGAGG 1 chr12:12786838-12787338 ( 66) GCCCCACGATGGCGGCGAGGGC 1 chr17:80415306-80415806 ( 64) TGTCCGCTGCAGCCGCGCGGGT 1 chr19:911647-912147 ( 75) GAGGGCGAGTGGGGCCGGGCGT 1 chr1:100895844-100896344 ( 29) GTTGCGCGGCCCGGGCCGGAAG 1 chr11:7252606-7253106 ( 37) GACGCGATCCGGCGTTGGGCCG 1 chr17:1180189-1180689 ( 12) CCTGCGCGCCGCGGGACGCGCC 1 chr1:110407489-110407989 ( 6) GACGCGAGCGGGGCGTGGACCG 1 chr3:53347626-53348126 ( 40) CCGCCGAAGTGCCGGCCTCGCG 1 chr16:28822591-28823091 ( 6) GAGCGGCGCGGGCGCTCACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.28236 E= 9.9e-044 -1360 -26 129 -102 21 10 49 -183 -1360 -21 127 -102 -166 69 74 -251 -51 58 6 -58 -325 18 131 -1360 -44 -7 98 -251 -125 -307 156 -166 -102 -31 131 -1360 -1360 118 2 -102 -58 -2 110 -1360 -325 -190 173 -483 -151 79 74 -1360 34 -67 100 -1360 -1360 -307 169 -125 -225 142 -226 -44 -483 18 84 -19 -225 -31 124 -125 -251 58 96 -283 -137 -98 152 -1360 -137 -21 131 -483 -1360 66 82 -125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 124 E= 9.9e-044 0.000000 0.225806 0.661290 0.112903 0.266129 0.290323 0.379032 0.064516 0.000000 0.233871 0.653226 0.112903 0.072581 0.435484 0.451613 0.040323 0.161290 0.403226 0.282258 0.153226 0.024194 0.306452 0.669355 0.000000 0.169355 0.258065 0.532258 0.040323 0.096774 0.032258 0.798387 0.072581 0.112903 0.217742 0.669355 0.000000 0.000000 0.612903 0.274194 0.112903 0.153226 0.266129 0.580645 0.000000 0.024194 0.072581 0.895161 0.008065 0.080645 0.467742 0.451613 0.000000 0.290323 0.169355 0.540323 0.000000 0.000000 0.032258 0.870968 0.096774 0.048387 0.725806 0.056452 0.169355 0.008065 0.306452 0.483871 0.201613 0.048387 0.217742 0.637097 0.096774 0.040323 0.403226 0.524194 0.032258 0.088710 0.137097 0.774194 0.000000 0.088710 0.233871 0.669355 0.008065 0.000000 0.427419 0.475806 0.096774 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGSSGGGGCGGSRGCSGSGGS MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GCA][GC][GC][CG][GC][GC]G[GC][CG][GC]G[CG][GA]GC[GCT][GC][GC]G[GC][GC] -------------------------------------------------------------------------------- Time 355.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 width = 31 sites = 58 llr = 775 E-value = 2.1e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3511175124637544546535325432436 pos.-specific C 1:::1:::1::1:1:::43:121::12:1:: probability G 6367824874462455511363484547462 matrix T 1231:112:2::1:21:1:211211:11112 bits 2.1 1.9 1.7 1.5 Relative 1.3 Entropy 1.1 * * * * (19.3 bits) 0.8 *** * * * * * * * 0.6 ******* * ***** * *** * ** 0.4 ***************** *** *** **** 0.2 ******************************* 0.0 ------------------------------- Multilevel GAGGGAAGGGAGAAGGGAAAGAGGAGGGAGA consensus AGT G AAGAGGAAACCGAGA GAA GAG sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr16:21502999-21503499 + 59 1.33e-12 gggaaggagg gagggaggaaggaaggaaaggagggaggaaa ggaaagaaaa chr20:61575778-61576278 + 51 3.95e-12 gaggaaaagg gagggaaggagaagggacaagtggaggggaa gatgaaagag chr7:4681154-4681654 + 4 7.32e-12 agg gaaggaaggaaggaaggaaagaagggaggga aggaaggaat chr18:48107203-48107703 + 3 4.04e-11 AA GAAAGAGGGAAGAAGAGGAAGAGGAGAGGGA GGAGGGCTGG chr10:18553296-18553796 + 23 5.26e-09 cggagaaagg aatggagtggagaatggaatgaaagggagga tggaatggaa chr5:159098259-159098759 + 1 6.81e-09 . gagggagggaaggagaacgagatagcagaaa taagagaaga chr1:17212955-17213455 + 46 7.73e-09 caggctggta ggagcagggaaaagtaaaaaaagaaaagaaa gctgatcagc chr1:152036498-152036998 - 49 9.93e-09 AATCAGCCTC GTGGGAGGGAACTGGGGAAGAAGGGATGGAA GGATGAAGCC chr16:14186385-14186885 + 8 1.12e-08 CCAGCGC GGGGGAAGCTGGAATGGCAAGGGAAAGGGGG CTGGCTGGGA chr6:31735300-31735800 - 54 1.27e-08 CTACCACAAG GATGGGTGGGAGAGAGATCAGACGGAGGAGA AGAGCTCGGT chr6:71288498-71288998 + 2 2.06e-08 T GTGGGGAGGAGAAGGAGCCGGATGGGCGGGT TCAGGCGCGC chr19:48836347-48836847 - 27 2.31e-08 TCCTGGGTCT GTGGGAAGAGAGGAGTGTCTGAGGGAGGAGG GGCTGGGGAC chr11:116193871-11619437 + 70 2.31e-08 AAGAGCATTA GAGGGAGAGAGGGAAAAAAAGTTGGAAAGAA chr15:96339494-96339994 - 21 3.27e-08 CCTCCAAACC AGGAAAAGAGAAAGAGGAAAAATGAAAAAAA GACTCCAAAA chr19:6209479-6209979 - 62 3.67e-08 GGTTAATG GGTGGATGGAAGGAAGGAAGGATGGATGCGT GGATGGATGG chr20:2470832-2471332 - 2 4.11e-08 AGGAGAGAGC CGGGGAGGGTGATGGGAAATGAGGACCGAGA G chr12:4270935-4271435 + 66 4.11e-08 AAGACGGAGT AGGGGGAGGGGGAGAGGGAAGGGGCGAGAGG GCCC chr22:39171563-39172063 + 26 4.11e-08 AGCGGCGCCG GATGGAGGATAGAGGGGCAGGAGGAGGTGTG GGCAGGCATG chr10:29318392-29318892 + 9 4.59e-08 tagcggag aaggggagggataatagcagaggaggggaga CATCAGATGG chr17:78318254-78318754 + 14 5.13e-08 ACCCCAATTC TGGGGAGTGTGGAGATGACTGAGGAAGGGGG GATATTTCCA chr10:15817769-15818269 + 48 7.13e-08 AGAAGAATAA AAGAAAAGGAACAAAGAAAGAGGGAAAGata aaatcacagt chr1:26529251-26529751 + 7 8.83e-08 TCTCCC GTTGGAAGGAGAAGGAACATCTGGGCTGGGA TTCCAAAAGA chr2:74148036-74148536 - 30 9.81e-08 AGAGTAGGGA GTGGGAATGGAAAAGTACATCAGGAGCACGA GGGGTATTCG chr20:33685050-33685550 + 17 1.34e-07 GAGGGTGGAG GGTGGCAGATGGAAGGACAGGCAGAGGGAGG GGATCAGCAG chr14:93207844-93208344 + 13 1.49e-07 GCAAGTGGCT CTGGCAAGGGAGGGGAGAGAGGAGAAAAGGA TCTGTTTGGC chr4:2417657-2418157 + 23 1.65e-07 ATTCCTGGTG CAGGGAGGGGAGACGGAGAAGTAGTAGGGGG TCTGCTCCGG chr2:23481085-23481585 - 19 1.65e-07 AGAGAATCAC AAGTGTAGGAGCAGGAAACGGAGGAGGGAAT GTTGCCTACA chr10:110016132-11001663 + 70 1.65e-07 TACTTGTTGG AATGCATGGGAAAAGAGAAACCTGAAGAAGT chr1:168137382-168137882 - 39 2.01e-07 AGTGGGGAGT GAGGAAGGGAAAACAAACATTCTGAGAAGGA ACTGTTCCGT chr16:30985094-30985594 - 38 2.22e-07 GGGAAGGTTA TAGGAAGGTGGGAAGGGCCGGATGGAGGGAA AGGCCACCTG chr7:129228355-129228855 + 25 2.22e-07 GTAAGTTCCA CAGGGAATGAGGTAGTACTAGCTGAAAGGGA TTTCTTCCTT chr12:65826943-65827443 - 69 2.45e-07 G GGTGGAGTGGAGAAAACTAAAAGGAGGTAAA AGCGAGGAGG chr18:39770533-39771033 - 69 3.28e-07 G AAGAGAAGTGGAAATAGAAGAAAGTGCGAAA GTGCAAGGGA chr17:57530692-57531192 + 59 3.97e-07 AAGTGGTATT TATGGAGGGAAGAGATGGCAGGGGGTGGAGG GTGGGGAGCA chr17:48990788-48991288 + 70 3.97e-07 GAGGGGCAGA GGAGCAGGAGAATAATAAAAGGGTAAAGAGA chr17:1180189-1180689 - 48 4.36e-07 CTCAGAGGTC AGGGGTGTGGAAAGGGACGAGCGGGGGAAGG TTCGGGAGGA chr10:69318549-69319049 + 66 4.78e-07 GCCGCGCCCC GGGCCgagggggaggagccgggggaggagga ggag chr19:49878320-49878820 - 58 5.24e-07 CCTAGAAAAA AAGCGAGTGGAGAAGGGCAAAGCGGGTGGAG CCTACCTTCT chr8:102657463-102657963 + 63 5.24e-07 TGACTTGTGA GAGTGATTCAAAACAGGAAAGAAAAGAGAAA AGGGGTA chr1:155978817-155979317 + 25 5.75e-07 CCCTTTTACG ATTGGGGGCAGGGGTGGCCAGAGGGAGAGGA AATCAAAGGA chr17:49227943-49228443 - 68 7.54e-07 AG ACAGGAAGGAAGGAAGGGCAAAGTAATGAGA CCCTTCTCTA chr9:125408548-125409048 + 60 9.83e-07 CACCCTCCCC GGGGGAAGGAAGGGGAGCCGCGTGTGCGCGT CTTCCATGCG chr12:6752309-6752809 - 63 9.83e-07 GGCTCTG AGTGGGGGAGGGAAAAACCGAGAGGGTTGGA AAAATTTTCC chr10:120981809-12098230 + 35 1.39e-06 GGATCCCCTC AGGGCTGTAAGCAAAGGAAGGCTGAGAGAAA CTTGAGCCCC chr4:82213968-82214468 + 4 1.51e-06 GCT GAGGGAGGAGAGGGTGAGCAGCAATGAGGTA ATTCCCTCAG chr10:33339460-33339960 + 63 1.51e-06 ctgaagagtc aatagaaggtaaagaaagagagagaacacat aaagata chrX:129987012-129987512 + 8 1.64e-06 AAAGTAG GGTGGGGGAGAAACTGGCATTTAGAGAGAAA TACAAGCATA chr9:130713600-130714100 + 53 1.93e-06 CAGGAAATTT GTTGGAAGATGAAGAAGCTAAGATAGGGGGT TGGTGACTTC chr13:95300099-95300599 + 58 2.10e-06 TCCTACGTGG AAGTGAAAGTATTGGAAACAGGGGAAAGAAG CTGGTCAAAG chr10:101091461-10109196 + 69 2.28e-06 CTCCTCTGGG GATTGGAGGTGGTGAAGTGGACAGGAAGGGA A chr14:95154470-95154970 + 19 2.89e-06 ggttctctgg cattgaaggtaggatggaatcaggagttagt gttaatgagg chr5:113217674-113218174 - 14 3.65e-06 CCGAAAATGT GTTGGAAGAGGAAAGGAACATACAGGCGTGG TGTGCACACT chr4:48780206-48780706 - 4 4.26e-06 AGACCAACCC GGGAAAAGGGGCGGGGAGAAGGTAGGAGCAA CTT chr7:101166190-101166690 - 9 6.64e-06 AAGCGACTGG GGGAGTGTGGGAAGAGATGGGCCGAAGGGGG CACAGCGG chr10:52314462-52314962 + 70 7.67e-06 GTCCTATCTG GAGACGAGGGAGTAGAACGTGCTGAATGTGT chr3:4492364-4492864 - 60 1.17e-05 GGCTCTGAGA TTGGGAGGCAGAAAATAAATACAAACCGCGA CCTCAGTCCT chr16:28822591-28823091 - 60 1.52e-05 TTAGCTCCCG GCGGGAAAGTGGGAGAGAATCAAGTCGGTGA ACCTCGCACC chr7:100888410-100888910 - 63 2.39e-05 TACTCTG GAAGGATGGAGGAGTTATGTAACACACGAGA GTCAGGAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:21502999-21503499 1.3e-12 58_[+2]_11 chr20:61575778-61576278 4e-12 50_[+2]_19 chr7:4681154-4681654 7.3e-12 3_[+2]_66 chr18:48107203-48107703 4e-11 2_[+2]_67 chr10:18553296-18553796 5.3e-09 22_[+2]_47 chr5:159098259-159098759 6.8e-09 [+2]_69 chr1:17212955-17213455 7.7e-09 45_[+2]_24 chr1:152036498-152036998 9.9e-09 48_[-2]_21 chr16:14186385-14186885 1.1e-08 7_[+2]_62 chr6:31735300-31735800 1.3e-08 53_[-2]_16 chr6:71288498-71288998 2.1e-08 1_[+2]_68 chr19:48836347-48836847 2.3e-08 26_[-2]_43 chr11:116193871-11619437 2.3e-08 69_[+2] chr15:96339494-96339994 3.3e-08 20_[-2]_49 chr19:6209479-6209979 3.7e-08 61_[-2]_8 chr20:2470832-2471332 4.1e-08 1_[-2]_68 chr12:4270935-4271435 4.1e-08 65_[+2]_4 chr22:39171563-39172063 4.1e-08 25_[+2]_44 chr10:29318392-29318892 4.6e-08 8_[+2]_61 chr17:78318254-78318754 5.1e-08 13_[+2]_56 chr10:15817769-15818269 7.1e-08 47_[+2]_22 chr1:26529251-26529751 8.8e-08 6_[+2]_63 chr2:74148036-74148536 9.8e-08 29_[-2]_40 chr20:33685050-33685550 1.3e-07 16_[+2]_53 chr14:93207844-93208344 1.5e-07 12_[+2]_57 chr4:2417657-2418157 1.6e-07 22_[+2]_47 chr2:23481085-23481585 1.6e-07 18_[-2]_51 chr10:110016132-11001663 1.6e-07 69_[+2] chr1:168137382-168137882 2e-07 38_[-2]_31 chr16:30985094-30985594 2.2e-07 37_[-2]_32 chr7:129228355-129228855 2.2e-07 24_[+2]_45 chr12:65826943-65827443 2.5e-07 68_[-2]_1 chr18:39770533-39771033 3.3e-07 68_[-2]_1 chr17:57530692-57531192 4e-07 58_[+2]_11 chr17:48990788-48991288 4e-07 69_[+2] chr17:1180189-1180689 4.4e-07 47_[-2]_22 chr10:69318549-69319049 4.8e-07 65_[+2]_4 chr19:49878320-49878820 5.2e-07 57_[-2]_12 chr8:102657463-102657963 5.2e-07 62_[+2]_7 chr1:155978817-155979317 5.7e-07 24_[+2]_45 chr17:49227943-49228443 7.5e-07 67_[-2]_2 chr9:125408548-125409048 9.8e-07 59_[+2]_10 chr12:6752309-6752809 9.8e-07 62_[-2]_7 chr10:120981809-12098230 1.4e-06 34_[+2]_35 chr4:82213968-82214468 1.5e-06 3_[+2]_66 chr10:33339460-33339960 1.5e-06 62_[+2]_7 chrX:129987012-129987512 1.6e-06 7_[+2]_62 chr9:130713600-130714100 1.9e-06 52_[+2]_17 chr13:95300099-95300599 2.1e-06 57_[+2]_12 chr10:101091461-10109196 2.3e-06 68_[+2]_1 chr14:95154470-95154970 2.9e-06 18_[+2]_51 chr5:113217674-113218174 3.7e-06 13_[-2]_56 chr4:48780206-48780706 4.3e-06 3_[-2]_66 chr7:101166190-101166690 6.6e-06 8_[-2]_61 chr10:52314462-52314962 7.7e-06 69_[+2] chr3:4492364-4492864 1.2e-05 59_[-2]_10 chr16:28822591-28823091 1.5e-05 59_[-2]_10 chr7:100888410-100888910 2.4e-05 62_[-2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGGGARGGRRRARRRRMARGRDGRRRGRGA width=31 seqs=58 chr16:21502999-21503499 ( 59) GAGGGAGGAAGGAAGGAAAGGAGGGAGGAAA 1 chr20:61575778-61576278 ( 51) GAGGGAAGGAGAAGGGACAAGTGGAGGGGAA 1 chr7:4681154-4681654 ( 4) GAAGGAAGGAAGGAAGGAAAGAAGGGAGGGA 1 chr18:48107203-48107703 ( 3) GAAAGAGGGAAGAAGAGGAAGAGGAGAGGGA 1 chr10:18553296-18553796 ( 23) AATGGAGTGGAGAATGGAATGAAAGGGAGGA 1 chr5:159098259-159098759 ( 1) GAGGGAGGGAAGGAGAACGAGATAGCAGAAA 1 chr1:17212955-17213455 ( 46) GGAGCAGGGAAAAGTAAAAAAAGAAAAGAAA 1 chr1:152036498-152036998 ( 49) GTGGGAGGGAACTGGGGAAGAAGGGATGGAA 1 chr16:14186385-14186885 ( 8) GGGGGAAGCTGGAATGGCAAGGGAAAGGGGG 1 chr6:31735300-31735800 ( 54) GATGGGTGGGAGAGAGATCAGACGGAGGAGA 1 chr6:71288498-71288998 ( 2) GTGGGGAGGAGAAGGAGCCGGATGGGCGGGT 1 chr19:48836347-48836847 ( 27) GTGGGAAGAGAGGAGTGTCTGAGGGAGGAGG 1 chr11:116193871-11619437 ( 70) GAGGGAGAGAGGGAAAAAAAGTTGGAAAGAA 1 chr15:96339494-96339994 ( 21) AGGAAAAGAGAAAGAGGAAAAATGAAAAAAA 1 chr19:6209479-6209979 ( 62) GGTGGATGGAAGGAAGGAAGGATGGATGCGT 1 chr20:2470832-2471332 ( 2) CGGGGAGGGTGATGGGAAATGAGGACCGAGA 1 chr12:4270935-4271435 ( 66) AGGGGGAGGGGGAGAGGGAAGGGGCGAGAGG 1 chr22:39171563-39172063 ( 26) GATGGAGGATAGAGGGGCAGGAGGAGGTGTG 1 chr10:29318392-29318892 ( 9) AAGGGGAGGGATAATAGCAGAGGAGGGGAGA 1 chr17:78318254-78318754 ( 14) TGGGGAGTGTGGAGATGACTGAGGAAGGGGG 1 chr10:15817769-15818269 ( 48) AAGAAAAGGAACAAAGAAAGAGGGAAAGATA 1 chr1:26529251-26529751 ( 7) GTTGGAAGGAGAAGGAACATCTGGGCTGGGA 1 chr2:74148036-74148536 ( 30) GTGGGAATGGAAAAGTACATCAGGAGCACGA 1 chr20:33685050-33685550 ( 17) GGTGGCAGATGGAAGGACAGGCAGAGGGAGG 1 chr14:93207844-93208344 ( 13) CTGGCAAGGGAGGGGAGAGAGGAGAAAAGGA 1 chr4:2417657-2418157 ( 23) CAGGGAGGGGAGACGGAGAAGTAGTAGGGGG 1 chr2:23481085-23481585 ( 19) AAGTGTAGGAGCAGGAAACGGAGGAGGGAAT 1 chr10:110016132-11001663 ( 70) AATGCATGGGAAAAGAGAAACCTGAAGAAGT 1 chr1:168137382-168137882 ( 39) GAGGAAGGGAAAACAAACATTCTGAGAAGGA 1 chr16:30985094-30985594 ( 38) TAGGAAGGTGGGAAGGGCCGGATGGAGGGAA 1 chr7:129228355-129228855 ( 25) CAGGGAATGAGGTAGTACTAGCTGAAAGGGA 1 chr12:65826943-65827443 ( 69) GGTGGAGTGGAGAAAACTAAAAGGAGGTAAA 1 chr18:39770533-39771033 ( 69) AAGAGAAGTGGAAATAGAAGAAAGTGCGAAA 1 chr17:57530692-57531192 ( 59) TATGGAGGGAAGAGATGGCAGGGGGTGGAGG 1 chr17:48990788-48991288 ( 70) GGAGCAGGAGAATAATAAAAGGGTAAAGAGA 1 chr17:1180189-1180689 ( 48) AGGGGTGTGGAAAGGGACGAGCGGGGGAAGG 1 chr10:69318549-69319049 ( 66) GGGCCGAGGGGGAGGAGCCGGGGGAGGAGGA 1 chr19:49878320-49878820 ( 58) AAGCGAGTGGAGAAGGGCAAAGCGGGTGGAG 1 chr8:102657463-102657963 ( 63) GAGTGATTCAAAACAGGAAAGAAAAGAGAAA 1 chr1:155978817-155979317 ( 25) ATTGGGGGCAGGGGTGGCCAGAGGGAGAGGA 1 chr17:49227943-49228443 ( 68) ACAGGAAGGAAGGAAGGGCAAAGTAATGAGA 1 chr9:125408548-125409048 ( 60) GGGGGAAGGAAGGGGAGCCGCGTGTGCGCGT 1 chr12:6752309-6752809 ( 63) AGTGGGGGAGGGAAAAACCGAGAGGGTTGGA 1 chr10:120981809-12098230 ( 35) AGGGCTGTAAGCAAAGGAAGGCTGAGAGAAA 1 chr4:82213968-82214468 ( 4) GAGGGAGGAGAGGGTGAGCAGCAATGAGGTA 1 chr10:33339460-33339960 ( 63) AATAGAAGGTAAAGAAAGAGAGAGAACACAT 1 chrX:129987012-129987512 ( 8) GGTGGGGGAGAAACTGGCATTTAGAGAGAAA 1 chr9:130713600-130714100 ( 53) GTTGGAAGATGAAGAAGCTAAGATAGGGGGT 1 chr13:95300099-95300599 ( 58) AAGTGAAAGTATTGGAAACAGGGGAAAGAAG 1 chr10:101091461-10109196 ( 69) GATTGGAGGTGGTGAAGTGGACAGGAAGGGA 1 chr14:95154470-95154970 ( 19) CATTGAAGGTAGGATGGAATCAGGAGTTAGT 1 chr5:113217674-113218174 ( 14) GTTGGAAGAGGAAAGGAACATACAGGCGTGG 1 chr4:48780206-48780706 ( 4) GGGAAAAGGGGCGGGGAGAAGGTAGGAGCAA 1 chr7:101166190-101166690 ( 9) GGGAGTGTGGGAAGAGATGGGCCGAAGGGGG 1 chr10:52314462-52314962 ( 70) GAGACGAGGGAGTAGAACGTGCTGAATGTGT 1 chr3:4492364-4492864 ( 60) TTGGGAGGCAGAAAATAAATACAAACCGCGA 1 chr16:28822591-28823091 ( 60) GCGGGAAAGTGGGAGAGAATCAAGTCGGTGA 1 chr7:100888410-100888910 ( 63) GAAGGATGGAGGAGTTATGTAACACACGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 10.7485 E= 2.1e-049 26 -165 107 -174 107 -297 20 -41 -115 -1250 116 35 -74 -297 146 -141 -141 -116 155 -1250 169 -397 -65 -174 107 -1250 67 -141 -215 -1250 152 -41 -15 -197 135 -273 79 -1250 61 -28 126 -1250 73 -1250 51 -165 103 -273 151 -1250 -27 -93 107 -197 73 -1250 66 -1250 78 -41 72 -1250 84 -74 102 -397 94 -1250 79 42 -97 -115 135 -6 -116 -273 102 -1250 20 -4 17 -139 112 -215 102 -51 -6 -141 17 -165 67 -4 -28 -1250 149 -215 117 -297 42 -141 91 -165 78 -373 51 -80 49 -74 -28 -1250 146 -174 91 -139 61 -215 43 -1250 124 -215 143 -1250 -27 -57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 58 E= 2.1e-049 0.275862 0.086207 0.568966 0.068966 0.482759 0.034483 0.310345 0.172414 0.103448 0.000000 0.603448 0.293103 0.137931 0.034483 0.741379 0.086207 0.086207 0.120690 0.793103 0.000000 0.741379 0.017241 0.172414 0.068966 0.482759 0.000000 0.431034 0.086207 0.051724 0.000000 0.775862 0.172414 0.206897 0.068966 0.689655 0.034483 0.396552 0.000000 0.413793 0.189655 0.551724 0.000000 0.448276 0.000000 0.327586 0.086207 0.551724 0.034483 0.655172 0.000000 0.224138 0.120690 0.482759 0.068966 0.448276 0.000000 0.362069 0.000000 0.465517 0.172414 0.379310 0.000000 0.482759 0.137931 0.465517 0.017241 0.517241 0.000000 0.396552 0.362069 0.137931 0.103448 0.586207 0.258621 0.120690 0.034483 0.465517 0.000000 0.310345 0.224138 0.258621 0.103448 0.586207 0.051724 0.465517 0.189655 0.258621 0.086207 0.258621 0.086207 0.431034 0.224138 0.189655 0.000000 0.758621 0.051724 0.517241 0.034483 0.362069 0.086207 0.431034 0.086207 0.465517 0.017241 0.327586 0.155172 0.379310 0.137931 0.189655 0.000000 0.741379 0.068966 0.431034 0.103448 0.413793 0.051724 0.310345 0.000000 0.637931 0.051724 0.620690 0.000000 0.224138 0.155172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGARGGRRRARRRRMARGRDGRRRGRGA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AG][GT]GGA[AG]G[GA][GA][AG][GA][AG][AG][GA][GA][GA][AC][AC][AGT][GA][AG][GAT]G[AG][GA][GA]G[AG][GA][AG] -------------------------------------------------------------------------------- Time 671.94 secs. ******************************************************************************** ******************************************************************************** MOTIF WWWTWAAMWMAAHAAAWKMWAM MEME-3 width = 22 sites = 78 llr = 793 E-value = 7.5e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4432376465762779515664 pos.-specific C 22111114:31:3:11:23::3 probability G 1:1::112:1:21:1:14::21 matrix T 3457613:4132432:432422 bits 2.1 1.9 1.7 1.5 * Relative 1.3 * * Entropy 1.1 * * * * (14.7 bits) 0.8 ** * * *** * 0.6 * *** * ** **** *** 0.4 ************ **** *** 0.2 ********************** 0.0 ---------------------- Multilevel ATTTTAAAAAAATAAAAGAAAA consensus TAA A TCTCTTCT TTCT C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr14:49586811-49587311 - 73 1.22e-10 GTACTC TCTTTAACAAAATAAAAGCAAA CCCTACCGTT chr1:168172764-168173264 - 11 8.20e-09 ACATTTTTAT TTTAAAAGTAAATAAATGCAAA GAATACCATG chr12:12721420-12721920 + 13 1.19e-08 GCATGTGGCT TTTTTAAAAAAGCAACAGAAAC CTATCCTCAC chrX:139933229-139933729 + 33 2.40e-08 ATTTGCGAAA CTTTAAAAATTACAAAAGAAAA GCGAGTCCAG chr1:241130543-241131043 - 49 4.67e-08 TGAAAGGGAT GTTATAAAAATAAAAAAGAAAC CAAACACCAA chr10:15432621-15433121 + 77 1.38e-07 CGTTCTCTTT AATTAATAAAAAATAAACCAGA CA chr3:160684162-160684662 - 26 1.38e-07 AAGGTTTGGC ATTTTACAAAATAAAAAGTTGA GGAAAAATTA chr3:173396735-173397235 + 41 1.60e-07 GAAATCGTGT CCTTTATAAAAAATAATGCTAC CTAAATAAGT chr3:159865868-159866368 - 68 2.46e-07 TGTGCCTAAA ATTTCAAGAAAATAAAAAATGC TGATAAGTGG chr14:39316008-39316508 + 46 2.83e-07 gaggatgcag attttgactaattataagaaag acactgtaac chr19:18372909-18373409 + 47 2.83e-07 acatagcaag attctatctctacaaaagtaaa aatAAATCTT chr6:124488083-124488583 + 32 4.26e-07 TGGGGCTGTA AATTACTATAATTAAATTAAGC CATAACCGTA chr6:16136391-16136891 - 34 6.32e-07 GTCCGGCAGT TAGTTATAAAATGAAATGATTA CTTACTCCAT chr19:33902547-33903047 - 6 6.32e-07 ATCATTCATA TATATATATATATATATGAAGA AACAT chr10:113048034-11304853 + 12 8.16e-07 CTATGTTTAT CTTTCCAGTAAATAAAACAAAA TTGTTCATTT chr10:99443749-99444249 + 70 1.05e-06 acctctaaac attttacaacaaaaacatattc atgcactgc chr18:22183023-22183523 - 30 1.05e-06 CTTGGGTTAA TTTAACCATAAAAAAATGATAC CGATCTTAAT chr19:46781189-46781689 + 43 1.05e-06 aaccccgtct ctactaaaaatacaaaattagc cgggcatggt chr6:110959013-110959513 + 12 1.34e-06 ACTTCCTCTC AAAATGTGAAAATAAATGCAAG GTTTTGGTGA chr4:169267241-169267741 + 10 1.70e-06 AGTCCAAAT AAGTAAACTCCATAAAATAAAG GAAATCTAAG chr6:1616912-1617412 - 40 1.70e-06 GCCTAAGTGG ACGTTGTCAGAATAAATTAAAC TTCCCTGTCG chrX:118588788-118589288 - 7 1.70e-06 TGGGTTACAG TTATAAAGAGTAAAAATATAAA GGCACT chr13:93786961-93787461 + 57 1.91e-06 TTTAAATTCT CCCTAAAATAAACAAATACTAC TTTCCGTATG chr19:31312800-31313300 - 3 1.91e-06 GTTTACACAC GTTTTAACTCAAATAAATTTAT TT chr12:31368924-31369424 - 8 2.15e-06 GATGGAGAGT AAATCTTATAAACAAATGAAAA ACCTGTG chr2:23481085-23481585 - 67 2.15e-06 AAAAGGATAC ATTAAGACACCATAAATCAAAA GTAGGAGAGA chr3:24640416-24640916 - 49 3.38e-06 TTTCTCACCG TTATTATCTCATTAAAGTCAAG CGCTGAAAGC chr3:193242779-193243279 - 36 3.77e-06 CCTGGGGATG CATCAAAATAAATAAATGTTCC CTGCCGATAG chr9:86492042-86492542 - 61 4.20e-06 ATGTCACATC AATTAAGGACAAATAAACAATA CCTAGCTGGA chr13:35476786-35477286 + 72 4.68e-06 TTGACGGGGT TTTCTAAAACAAAATCACTAAC TTGCATT chr1:32775441-32775941 - 40 4.68e-06 ATCTGGTTTC AATATAACTCATTTAAAAATTT ATGCCACAGT chr7:116220311-116220811 + 35 4.68e-06 ctttattgga ttattgtgaaattaaataaagt agtacatgta chr6:100594447-100594947 + 37 5.21e-06 agttctgggt atatacccaaaggaaatgaaat cagtatgttg chr12:65306918-65307418 - 79 5.21e-06 . CATTAAACATAAATAAACATGT CATTTTCACG chr19:41310408-41310908 + 16 5.21e-06 CTTACCAGGC TAACTCTCAAATTAACAGAAAC CTCTCTACCC chr6:124097807-124098307 - 5 5.79e-06 CCCAGTAGCT CATCAACCAAAAAAAATCATTC ATCA chr12:85833668-85834168 + 38 6.42e-06 AATCACTCAT CATTTAAGAAAAGATATTTTGT TTCTGTGCTT chr4:144356396-144356896 + 19 6.42e-06 TGCTCCCTTC CCATTAGCTGAATAAATCATAA AGTCGGCTCA chr17:7687593-7688093 - 43 6.42e-06 AAAAAATGAC ATTTTAACTGATGAGAAGAAAG GATCCAGCTG chr22:38395119-38395619 + 27 7.12e-06 ATCTACCCCC ACCTTAAAAAAGTAAAGGCAGT CAAAGTCAAA chr3:195205003-195205503 + 2 7.89e-06 a aatttatgtccatacaacaaaa tgcagcttta chr5:124736976-124737476 + 11 7.89e-06 AATCATTATG TACAACACAAAATATAATCAAT ATATTTTTAC chr5:174056647-174057147 - 3 7.89e-06 AAAGTACAGA TCATAAAAATTTAAAATACTAC TT chr3:169165361-169165861 + 73 8.72e-06 TTGAGGCATA ATGTTAAATGTTCACAAGATAA GCTAAC chr3:150607629-150608129 - 38 8.72e-06 TCCTGGAATG TCTTTTCCACAAGAAAACCAAA CGGTCTTTGT chr6:2998570-2999070 - 8 9.64e-06 TTTAGAACGT TCCTAACGAAAATAACTGCAAC TCTTGAT chr8:29316569-29317069 - 2 9.64e-06 GGGCTCAGAG ACAACATAAATACAAATTTAAC A chr15:96694127-96694627 + 26 9.64e-06 TAGACCAATT TTTATAGGATTGTAAAAGCTAA GTGTGGAGAT chr6:2026357-2026857 - 44 9.64e-06 TCATGCTAAA ATTAAAACAATTTTTCTGATAA CATGTACAAA chr5:67530615-67531115 - 11 9.64e-06 ACTCCTGGAC AAATTATATCAGTAACACCTGC AGATCATATA chr1:112952254-112952754 + 20 1.06e-05 ccaaccaatt atttaaaaacaactgaggaata tttgaatact chr1:89890299-89890799 - 79 1.17e-05 . AAAATCAAAAATCAAAAACATG GATGTGCCTG chr3:17605190-17605690 - 18 1.29e-05 GAACTAGACA TTTTTATTACATGTAATTCAAC ACATTACTTA chr17:78162392-78162892 + 45 1.29e-05 tcaactgctt tatctgcaaaaggaaaataata acagAGGCCA chr5:123809793-123810293 - 54 1.56e-05 TCCTGGCAAC ATGTTAGCAAAACATTAGAAAC ACTTTAGTAA chr17:42382113-42382613 - 39 1.72e-05 TCTATTTTCT TATCTGTAAAAGAAGATTATAA CAGTGCTTAT chr13:31328987-31329487 - 35 1.88e-05 TCTGGGAGAT TCCTAAACAATAGTAATAAATA CAAAAAGCTT chr5:82386840-82387340 - 48 2.06e-05 ATAAACCACC CTGTAAGCTCAGTAAATTTAAT TGGTAGATAG chr11:27088552-27089052 - 3 2.06e-05 CAGCTAATGA TTTATAAGACTACTTAGTCAAA TC chr13:50378488-50378988 - 44 2.47e-05 CATAAGATGA AAAGTTACACAATAAAAGCAGC ACTGCAGTTT chr17:48990788-48991288 - 22 2.47e-05 TTTGTTCCTT CTCTTAAATCAATATACCTAAC CAAACTTTCT chr15:82263310-82263810 - 47 2.70e-05 GACAACGTTC ATATTTACTTAGCAAATAATGA TCTAATCCCT chr14:77581113-77581613 + 17 2.95e-05 AGCCTCCCAG TAGATAAATCTTATAAATAAGG CTGAGCAAAG chr2:118185436-118185936 - 37 2.95e-05 ATATTGCAGT TATCCATAAATGGAAAAGCAAG AAGCCACCAA chr5:74206672-74207172 + 41 3.51e-05 ATGGAAATTT ACATACACAGTGTAAATGCTGA GCTTGTTTGT chr21:37253898-37254398 + 62 3.82e-05 AGCCAGCCCA CACTTATATATGAACAACCAAA GAGCCAGCAG chr13:40972945-40973445 - 77 3.82e-05 TG ATGTTGAAAGTACTGAAGATAC GAGACCAGGA chr15:63380241-63380741 - 71 3.82e-05 AAAATCAA GTTTTAAAACCACAAACTTTAC ATGTTTCCTT chr5:59767499-59767999 - 22 4.16e-05 CCTGACTTTG ATATACAGTATTCATAATCTTA AACATGCCTT chr19:33041143-33041643 + 68 4.52e-05 CCGTTGGTGC TTGTTGAGTCAGATTAATAAAT ACCTTCAGGG chr13:40565491-40565991 + 58 4.91e-05 ggcttaCCTT AATCTCTATTAGCTAATGTTAC TGTTATCACT chr19:39306272-39306772 - 39 4.91e-05 ATGTGCCAAG CACTTAAGTCATTTAATTCTCA CAACACCAGG chr17:1413396-1413896 - 31 5.32e-05 CTCTGTCTCA AAACAAACAAAGTTACTCTATC AGTTAGCTTT chr1:151945959-151946459 + 67 6.25e-05 TTCCTGTGAA GCGTTGACACAACTAAAGCTAG TGAAAGGATT chr3:111692879-111693379 - 70 7.91e-05 GAGCTTTTG CAGTACAATAATCTATATAAAC CTCCTGGTGA chr3:154133041-154133541 - 69 9.21e-05 CCTTTATTCC TAAATGACAACACTACAGTTAA ACCTGTCCCA chrX:129987012-129987512 - 75 1.33e-04 TGCA TTTTAACCTGTATATAATCTCT AAGTTCCCTA chr12:68207257-68207757 + 1 1.33e-04 . taattaacattatacagcattt taagtggata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:49586811-49587311 1.2e-10 72_[-3]_6 chr1:168172764-168173264 8.2e-09 10_[-3]_68 chr12:12721420-12721920 1.2e-08 12_[+3]_66 chrX:139933229-139933729 2.4e-08 32_[+3]_46 chr1:241130543-241131043 4.7e-08 48_[-3]_30 chr10:15432621-15433121 1.4e-07 76_[+3]_2 chr3:160684162-160684662 1.4e-07 25_[-3]_53 chr3:173396735-173397235 1.6e-07 40_[+3]_38 chr3:159865868-159866368 2.5e-07 67_[-3]_11 chr14:39316008-39316508 2.8e-07 45_[+3]_33 chr19:18372909-18373409 2.8e-07 46_[+3]_32 chr6:124488083-124488583 4.3e-07 31_[+3]_47 chr6:16136391-16136891 6.3e-07 33_[-3]_45 chr19:33902547-33903047 6.3e-07 5_[-3]_73 chr10:113048034-11304853 8.2e-07 11_[+3]_67 chr10:99443749-99444249 1e-06 69_[+3]_9 chr18:22183023-22183523 1e-06 29_[-3]_49 chr19:46781189-46781689 1e-06 42_[+3]_36 chr6:110959013-110959513 1.3e-06 11_[+3]_67 chr4:169267241-169267741 1.7e-06 9_[+3]_69 chr6:1616912-1617412 1.7e-06 39_[-3]_39 chrX:118588788-118589288 1.7e-06 6_[-3]_72 chr13:93786961-93787461 1.9e-06 56_[+3]_22 chr19:31312800-31313300 1.9e-06 2_[-3]_76 chr12:31368924-31369424 2.1e-06 7_[-3]_71 chr2:23481085-23481585 2.1e-06 66_[-3]_12 chr3:24640416-24640916 3.4e-06 48_[-3]_30 chr3:193242779-193243279 3.8e-06 35_[-3]_43 chr9:86492042-86492542 4.2e-06 60_[-3]_18 chr13:35476786-35477286 4.7e-06 71_[+3]_7 chr1:32775441-32775941 4.7e-06 39_[-3]_39 chr7:116220311-116220811 4.7e-06 34_[+3]_44 chr6:100594447-100594947 5.2e-06 36_[+3]_42 chr12:65306918-65307418 5.2e-06 78_[-3] chr19:41310408-41310908 5.2e-06 15_[+3]_63 chr6:124097807-124098307 5.8e-06 4_[-3]_74 chr12:85833668-85834168 6.4e-06 37_[+3]_41 chr4:144356396-144356896 6.4e-06 18_[+3]_60 chr17:7687593-7688093 6.4e-06 42_[-3]_36 chr22:38395119-38395619 7.1e-06 26_[+3]_52 chr3:195205003-195205503 7.9e-06 1_[+3]_77 chr5:124736976-124737476 7.9e-06 10_[+3]_68 chr5:174056647-174057147 7.9e-06 2_[-3]_76 chr3:169165361-169165861 8.7e-06 72_[+3]_6 chr3:150607629-150608129 8.7e-06 37_[-3]_41 chr6:2998570-2999070 9.6e-06 7_[-3]_71 chr8:29316569-29317069 9.6e-06 1_[-3]_77 chr15:96694127-96694627 9.6e-06 25_[+3]_53 chr6:2026357-2026857 9.6e-06 43_[-3]_35 chr5:67530615-67531115 9.6e-06 10_[-3]_68 chr1:112952254-112952754 1.1e-05 19_[+3]_59 chr1:89890299-89890799 1.2e-05 78_[-3] chr3:17605190-17605690 1.3e-05 17_[-3]_61 chr17:78162392-78162892 1.3e-05 44_[+3]_34 chr5:123809793-123810293 1.6e-05 53_[-3]_25 chr17:42382113-42382613 1.7e-05 38_[-3]_40 chr13:31328987-31329487 1.9e-05 34_[-3]_44 chr5:82386840-82387340 2.1e-05 47_[-3]_31 chr11:27088552-27089052 2.1e-05 2_[-3]_76 chr13:50378488-50378988 2.5e-05 43_[-3]_35 chr17:48990788-48991288 2.5e-05 21_[-3]_57 chr15:82263310-82263810 2.7e-05 46_[-3]_32 chr14:77581113-77581613 3e-05 16_[+3]_62 chr2:118185436-118185936 3e-05 36_[-3]_42 chr5:74206672-74207172 3.5e-05 40_[+3]_38 chr21:37253898-37254398 3.8e-05 61_[+3]_17 chr13:40972945-40973445 3.8e-05 76_[-3]_2 chr15:63380241-63380741 3.8e-05 70_[-3]_8 chr5:59767499-59767999 4.2e-05 21_[-3]_57 chr19:33041143-33041643 4.5e-05 67_[+3]_11 chr13:40565491-40565991 4.9e-05 57_[+3]_21 chr19:39306272-39306772 4.9e-05 38_[-3]_40 chr17:1413396-1413896 5.3e-05 30_[-3]_48 chr1:151945959-151946459 6.3e-05 66_[+3]_12 chr3:111692879-111693379 7.9e-05 69_[-3]_9 chr3:154133041-154133541 9.2e-05 68_[-3]_10 chrX:129987012-129987512 0.00013 74_[-3]_4 chr12:68207257-68207757 0.00013 [+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWWTWAAMWMAAHAAAWKMWAM width=22 seqs=78 chr14:49586811-49587311 ( 73) TCTTTAACAAAATAAAAGCAAA 1 chr1:168172764-168173264 ( 11) TTTAAAAGTAAATAAATGCAAA 1 chr12:12721420-12721920 ( 13) TTTTTAAAAAAGCAACAGAAAC 1 chrX:139933229-139933729 ( 33) CTTTAAAAATTACAAAAGAAAA 1 chr1:241130543-241131043 ( 49) GTTATAAAAATAAAAAAGAAAC 1 chr10:15432621-15433121 ( 77) AATTAATAAAAAATAAACCAGA 1 chr3:160684162-160684662 ( 26) ATTTTACAAAATAAAAAGTTGA 1 chr3:173396735-173397235 ( 41) CCTTTATAAAAAATAATGCTAC 1 chr3:159865868-159866368 ( 68) ATTTCAAGAAAATAAAAAATGC 1 chr14:39316008-39316508 ( 46) ATTTTGACTAATTATAAGAAAG 1 chr19:18372909-18373409 ( 47) ATTCTATCTCTACAAAAGTAAA 1 chr6:124488083-124488583 ( 32) AATTACTATAATTAAATTAAGC 1 chr6:16136391-16136891 ( 34) TAGTTATAAAATGAAATGATTA 1 chr19:33902547-33903047 ( 6) TATATATATATATATATGAAGA 1 chr10:113048034-11304853 ( 12) CTTTCCAGTAAATAAAACAAAA 1 chr10:99443749-99444249 ( 70) ATTTTACAACAAAAACATATTC 1 chr18:22183023-22183523 ( 30) TTTAACCATAAAAAAATGATAC 1 chr19:46781189-46781689 ( 43) CTACTAAAAATACAAAATTAGC 1 chr6:110959013-110959513 ( 12) AAAATGTGAAAATAAATGCAAG 1 chr4:169267241-169267741 ( 10) AAGTAAACTCCATAAAATAAAG 1 chr6:1616912-1617412 ( 40) ACGTTGTCAGAATAAATTAAAC 1 chrX:118588788-118589288 ( 7) TTATAAAGAGTAAAAATATAAA 1 chr13:93786961-93787461 ( 57) CCCTAAAATAAACAAATACTAC 1 chr19:31312800-31313300 ( 3) GTTTTAACTCAAATAAATTTAT 1 chr12:31368924-31369424 ( 8) AAATCTTATAAACAAATGAAAA 1 chr2:23481085-23481585 ( 67) ATTAAGACACCATAAATCAAAA 1 chr3:24640416-24640916 ( 49) TTATTATCTCATTAAAGTCAAG 1 chr3:193242779-193243279 ( 36) CATCAAAATAAATAAATGTTCC 1 chr9:86492042-86492542 ( 61) AATTAAGGACAAATAAACAATA 1 chr13:35476786-35477286 ( 72) TTTCTAAAACAAAATCACTAAC 1 chr1:32775441-32775941 ( 40) AATATAACTCATTTAAAAATTT 1 chr7:116220311-116220811 ( 35) TTATTGTGAAATTAAATAAAGT 1 chr6:100594447-100594947 ( 37) ATATACCCAAAGGAAATGAAAT 1 chr12:65306918-65307418 ( 79) CATTAAACATAAATAAACATGT 1 chr19:41310408-41310908 ( 16) TAACTCTCAAATTAACAGAAAC 1 chr6:124097807-124098307 ( 5) CATCAACCAAAAAAAATCATTC 1 chr12:85833668-85834168 ( 38) CATTTAAGAAAAGATATTTTGT 1 chr4:144356396-144356896 ( 19) CCATTAGCTGAATAAATCATAA 1 chr17:7687593-7688093 ( 43) ATTTTAACTGATGAGAAGAAAG 1 chr22:38395119-38395619 ( 27) ACCTTAAAAAAGTAAAGGCAGT 1 chr3:195205003-195205503 ( 2) AATTTATGTCCATACAACAAAA 1 chr5:124736976-124737476 ( 11) TACAACACAAAATATAATCAAT 1 chr5:174056647-174057147 ( 3) TCATAAAAATTTAAAATACTAC 1 chr3:169165361-169165861 ( 73) ATGTTAAATGTTCACAAGATAA 1 chr3:150607629-150608129 ( 38) TCTTTTCCACAAGAAAACCAAA 1 chr6:2998570-2999070 ( 8) TCCTAACGAAAATAACTGCAAC 1 chr8:29316569-29317069 ( 2) ACAACATAAATACAAATTTAAC 1 chr15:96694127-96694627 ( 26) TTTATAGGATTGTAAAAGCTAA 1 chr6:2026357-2026857 ( 44) ATTAAAACAATTTTTCTGATAA 1 chr5:67530615-67531115 ( 11) AAATTATATCAGTAACACCTGC 1 chr1:112952254-112952754 ( 20) ATTTAAAAACAACTGAGGAATA 1 chr1:89890299-89890799 ( 79) AAAATCAAAAATCAAAAACATG 1 chr3:17605190-17605690 ( 18) TTTTTATTACATGTAATTCAAC 1 chr17:78162392-78162892 ( 45) TATCTGCAAAAGGAAAATAATA 1 chr5:123809793-123810293 ( 54) ATGTTAGCAAAACATTAGAAAC 1 chr17:42382113-42382613 ( 39) TATCTGTAAAAGAAGATTATAA 1 chr13:31328987-31329487 ( 35) TCCTAAACAATAGTAATAAATA 1 chr5:82386840-82387340 ( 48) CTGTAAGCTCAGTAAATTTAAT 1 chr11:27088552-27089052 ( 3) TTTATAAGACTACTTAGTCAAA 1 chr13:50378488-50378988 ( 44) AAAGTTACACAATAAAAGCAGC 1 chr17:48990788-48991288 ( 22) CTCTTAAATCAATATACCTAAC 1 chr15:82263310-82263810 ( 47) ATATTTACTTAGCAAATAATGA 1 chr14:77581113-77581613 ( 17) TAGATAAATCTTATAAATAAGG 1 chr2:118185436-118185936 ( 37) TATCCATAAATGGAAAAGCAAG 1 chr5:74206672-74207172 ( 41) ACATACACAGTGTAAATGCTGA 1 chr21:37253898-37254398 ( 62) CACTTATATATGAACAACCAAA 1 chr13:40972945-40973445 ( 77) ATGTTGAAAGTACTGAAGATAC 1 chr15:63380241-63380741 ( 71) GTTTTAAAACCACAAACTTTAC 1 chr5:59767499-59767999 ( 22) ATATACAGTATTCATAATCTTA 1 chr19:33041143-33041643 ( 68) TTGTTGAGTCAGATTAATAAAT 1 chr13:40565491-40565991 ( 58) AATCTCTATTAGCTAATGTTAC 1 chr19:39306272-39306772 ( 39) CACTTAAGTCATTTAATTCTCA 1 chr17:1413396-1413896 ( 31) AAACAAACAAAGTTACTCTATC 1 chr1:151945959-151946459 ( 67) GCGTTGACACAACTAAAGCTAG 1 chr3:111692879-111693379 ( 70) CAGTACAATAATCTATATAAAC 1 chr3:154133041-154133541 ( 69) TAAATGACAACACTACAGTTAA 1 chrX:129987012-129987512 ( 75) TTTTAACCTGTATATAATCTCT 1 chr12:68207257-68207757 ( 1) TAATTAACATTATACAGCATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.1668 E= 7.5e-012 84 -49 -240 59 74 -70 -1293 97 16 -140 -94 112 -26 -94 -439 151 54 -208 -1293 139 154 -94 -94 -216 130 -123 -208 16 88 46 -49 -416 142 -1293 -1293 74 116 13 -140 -136 154 -208 -1293 23 133 -1293 -49 1 -8 -8 -123 84 169 -1293 -1293 16 169 -240 -240 -58 190 -123 -1293 -316 116 -340 -208 79 -99 -49 60 30 108 25 -1293 -26 139 -1293 -1293 79 142 -281 -49 -58 74 36 -123 -58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 78 E= 7.5e-012 0.410256 0.192308 0.051282 0.346154 0.384615 0.166667 0.000000 0.448718 0.256410 0.102564 0.141026 0.500000 0.192308 0.141026 0.012821 0.653846 0.333333 0.064103 0.000000 0.602564 0.666667 0.141026 0.141026 0.051282 0.564103 0.115385 0.064103 0.256410 0.423077 0.371795 0.192308 0.012821 0.615385 0.000000 0.000000 0.384615 0.512821 0.294872 0.102564 0.089744 0.666667 0.064103 0.000000 0.269231 0.576923 0.000000 0.192308 0.230769 0.217949 0.256410 0.115385 0.410256 0.743590 0.000000 0.000000 0.256410 0.743590 0.051282 0.051282 0.153846 0.858974 0.115385 0.000000 0.025641 0.512821 0.025641 0.064103 0.397436 0.115385 0.192308 0.410256 0.282051 0.487179 0.320513 0.000000 0.192308 0.602564 0.000000 0.000000 0.397436 0.615385 0.038462 0.192308 0.153846 0.384615 0.346154 0.115385 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWTWAAMWMAAHAAAWKMWAM MEME-3 regular expression -------------------------------------------------------------------------------- [AT][TA][TA]T[TA]A[AT][AC][AT][AC][AT][AT][TCA][AT]AA[AT][GT][AC][AT]A[AC] -------------------------------------------------------------------------------- Time 955.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CHTCCYKCC MEME-4 width = 9 sites = 90 llr = 802 E-value = 3.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::1::: pos.-specific C a3:aa5:aa probability G ::3:::4:: matrix T :57::46:: bits 2.1 1.9 * ** ** 1.7 * ** ** 1.5 * ** ** Relative 1.3 * *** ** Entropy 1.1 * *** *** (12.9 bits) 0.8 * *** *** 0.6 ********* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel CTTCCCTCC consensus CG TG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr5:68215701-68216201 - 28 4.02e-06 CGCCCGCCGG CTTCCTTCC TCTGCGGGGC chr6:2998570-2999070 + 52 4.02e-06 CAGGGGAAAC CTTCCTTCC TTCTGCTCTA chr6:7725936-7726436 + 62 4.02e-06 CACTAGCCCC CTTCCTTCC CATCCTTTCT chr19:4578809-4579309 + 46 4.02e-06 CTCGGGACAC CTTCCTTCC CAGGAGACGG chr7:4681154-4681654 - 80 4.02e-06 TCTTTCCTTC CTTCCTTCC TTCCCTTCCT chr17:7687593-7688093 - 4 4.02e-06 CAAAAGCTTT CTTCCTTCC ACC chr17:82021206-82021706 - 26 4.02e-06 CTGGCGTGGT CTTCCTTCC AAGGCCTGGG chr16:30985094-30985594 + 73 8.73e-06 ttcctataac cttccctcc acctccctca chr16:21502999-21503499 - 7 8.73e-06 CTTCCTTTTT CTTCCCTCC CTGCTT chr2:158967976-158968476 - 79 8.73e-06 GCGACCCGGC CTTCCCTCC TCGCTGCTTT chr7:149090712-149091212 - 68 8.73e-06 TCTCTGACCG CTTCCCTCC CCAGATCCCG chr1:42209511-42210011 - 31 8.73e-06 TTAGGAATGG CTTCCCTCC GGGCCTGCTG chr1:224227688-224228188 - 9 8.73e-06 CGCACATGCT CTTCCCTCC TGTGCCCT chr13:40972945-40973445 - 14 8.73e-06 AGGAAAGAAG CTTCCCTCC TAAAAGGTGA chr12:6752309-6752809 - 11 8.73e-06 TTGAAGAGCC CTTCCCTCC CTAGAGGGTT chr3:129179369-129179869 - 70 8.73e-06 CTCAAGTGAT CTTCCCTCC TCAGCCTCCC chr1:210337448-210337948 + 11 8.73e-06 gacccttcag cttccctcc tgtaaggaac chr10:15817769-15818269 - 14 1.75e-05 GTTCCCAAAC CATCCTTCC TACTTTACTG chr6:1616912-1617412 - 69 1.75e-05 GTGGGTTTCT CTTCCTGCC TAAGTGGACG chr20:35615982-35616482 - 37 1.75e-05 CTGCTGAGAG CTTCCTGCC CATGTGGTTC chr1:180155352-180155852 + 28 1.75e-05 CCCATGTCAT CTTCCTGCC AGGTTCCCTA chrX:73844978-73845478 + 16 1.75e-05 GGAGCGGGTA CTTCCTGCC AGAAGGGAAA chrX:1246165-1246665 - 16 1.75e-05 GGGGAGGATC CTTCCTGCC TCTTCGAGCT chr15:96694127-96694627 + 88 1.75e-05 TTGCTCCACT CTTCCTGCC ATTC chr14:22979585-22980085 + 1 1.75e-05 . CTTCCTGCC ATTTTATTGC chr8:102656238-102656738 + 48 1.75e-05 CCGCCCCGCC CATCCTTCC TCCTGGGCAA chr6:124097807-124098307 - 91 3.24e-05 G CATCCCTCC TTTTACTAGC chr1:230072850-230073350 - 11 3.24e-05 AGTACCAAGA CATCCCTCC TCCTTAAAAA chr22:38395119-38395619 + 71 3.24e-05 CTTCACTGCT CCTCCTTCC TCCCCTACTA chr17:56914157-56914657 + 64 3.24e-05 GAGCAAGTCC CCTCCTTCC CAGCACTCAT chr19:41310408-41310908 + 92 3.24e-05 TCTCAAATTA CCTCCTTCC chr1:26621347-26621847 + 77 3.24e-05 CAgagagcag cctccttcc ccattttaga chrX:139933229-139933729 + 83 3.24e-05 CGAGGCTGGG CATCCCTCC CAACTACCA chr1:20731872-20732372 + 13 3.24e-05 tgggtgcccg cttcccgcc gcccccgacc chr13:96091473-96091973 - 36 3.24e-05 GGAGGTTTCT CATCCCTCC CCAAAGCCAC chr17:48633104-48633604 + 52 3.24e-05 AAATTTGCTT CCTCCTTCC TGACCTTCGG chr16:2768303-2768803 - 40 3.24e-05 GTCTAACTGC CATCCCTCC TGCTGTAAAA chr3:196279390-196279890 - 71 3.80e-05 CAGTGCCACC CCTCCCTCC ACAAACACAT chr1:100895844-100896344 + 2 3.80e-05 G CCTCCCTCC TTTCCTGTCC chr4:48779961-48780461 + 53 3.80e-05 TGTGGTTAAA CCTCCCTCC GACTCTGATT chr7:101217482-101217982 - 33 3.80e-05 TCCTAGGCTT CCTCCCTCC CTGTCGCCGC chr8:124998684-124999184 + 84 3.80e-05 TTTCTGTGAC CCTCCCTCC ACTCCCAT chr7:101085619-101086119 + 62 3.80e-05 CTCGGGACTC CCTCCCTCC AGAGGTTTCT chr14:24431762-24432262 - 70 3.80e-05 ACCCTGTTTC CCTCCCTCC TTCTCCACAG chr12:111841890-11184239 - 13 4.27e-05 GCGCCCCTTG CTGCCTTCC GCTGGGGTTT chr17:38730829-38731329 - 55 4.27e-05 CAGGGTCCAG CTGCCTTCC CTCAAACGCT chr10:75601203-75601703 + 91 4.27e-05 GTTCTAGTAC CTGCCTTCC C chr16:2980440-2980940 + 49 5.22e-05 GGGACGCCCA CTGCCCTCC AGGCCTCGCA chr12:12721420-12721920 + 44 5.22e-05 CCTATCCTCA CTGCCCTCC CCAGTCTCTC chr13:93321144-93321644 + 15 5.22e-05 TTTCCTTCTG CTGCCCTCC TTACCAGGTA chr8:38231582-38232082 - 40 5.22e-05 TCAGGCTCTC CTGCCCTCC CTGAGGAGGA chr17:28662441-28662941 - 8 5.22e-05 CCCCAGGTCC CTTCCATCC CCAATCC chr1:47996513-47997013 + 74 5.69e-05 gggcggcgTG CATCCTGCC AGGGCCCGCG chr7:101166190-101166690 + 52 6.80e-05 AGTCGCTTTC CCTCCTGCC GCTCCCCTCC chr1:31413312-31413812 - 40 6.80e-05 AGGGCACTCC CCTCCTGCC CGCGGAAACC chr5:72955963-72956463 + 80 6.80e-05 GGGCGAGCGT CCTCCTGCC GCGTCCCGCC chr17:15999655-16000155 - 89 6.80e-05 GGA CCTCCTGCC AGCCCCGGGA chr19:7501079-7501579 + 41 6.80e-05 ACAAGTTGCG CATCCCGCC CACCACGCAC chr2:60881323-60881823 + 14 7.45e-05 GGGAAATTCC CCTCCCGCC AGGCTGCTCG chr5:132410434-132410934 + 42 7.45e-05 GCCTGCCCAG CCTCCCGCC CAGCCCGGGC chr1:111619848-111620348 - 48 7.45e-05 ATCTCCGGCC CCTCCCGCC GGCCAGGCCC chrX:133415695-133416195 + 20 7.45e-05 CGCGCGGAGC CCTCCCGCC GCGATATCCG chr18:75206720-75207220 - 3 8.47e-05 TGCCTAGGCA CTGCCTGCC CT chr10:73909165-73909665 - 87 8.47e-05 GCTGC CAGCCTTCC AGGGGACAGA chr17:28743237-28743737 + 14 8.47e-05 AAAATATCAG CTGCCTGCC TGGAGTGTGG chr15:72797023-72797523 + 47 8.47e-05 cgcctccggg cagccttcc cggactaccc chr1:94927420-94927920 + 26 8.47e-05 CCTCACCTCG CAGCCTTCC ACACCTGTTG chr16:8960556-8961056 - 62 8.47e-05 CCATCTATTT CAGCCTTCC CAATCCTGAA chr8:27774404-27774904 - 38 8.47e-05 CCGCTCGCCT CAGCCTTCC ACAGCCCCCC chr10:72059389-72059889 - 76 8.47e-05 CGCCTGCCTT CAGCCTTCC ATGAGCTTCA chr19:6209479-6209979 + 17 1.11e-04 tccatccaac catccatcc atccatccat chr9:20610551-20611051 + 58 1.11e-04 GGGAAGTTAG CTTCCAGCC CACTAGTTAC chr1:161045703-161046203 + 44 1.11e-04 CTCATGCGCA CTTCCAGCC CGCGGCCATG chr7:44638385-44638885 - 36 1.11e-04 TTTTCCCTTT CTTCCAGCC AAATTTATTC chr7:2632779-2633279 - 10 1.11e-04 GGCTCAGCCG CTTCCAGCC TCCCTGCCT chr1:89632847-89633347 - 87 1.11e-04 GCGGG CTTCCAGCC GGGACGCAGC chr18:48107203-48107703 - 34 1.11e-04 TGGCTGGTCC CAGCCCTCC TCCCTCTCCT chrX:73852465-73852965 + 22 1.11e-04 AGTCAGGAAG CTTCCAGCC CCGAGAGAGT chr17:50423925-50424425 + 4 1.11e-04 TCC CAGCCCTCC TCCCCATCCA chr1:243254635-243255135 - 6 1.11e-04 CCCCCACCCT CTGCCCGCC TGGGA chr16:88712112-88712612 - 75 1.11e-04 TTTCCAGGGA CAGCCCTCC CACCTCCTCT chr10:14089161-14089661 + 90 1.22e-04 GCCCTCTCCC CCGCCCTCC CC chr12:4809380-4809880 - 86 1.22e-04 AGAGGT CCGCCCTCC AGCCGGGCTA chr19:40541317-40541817 + 2 1.27e-04 G CTGCCATCC AGCCTGGCAC chr17:77531233-77531733 + 42 1.27e-04 GATGTGGCCC CTGCCATCC TTGTGGTCAC chr8:22095339-22095839 + 57 1.50e-04 GGGCTTCCCC CATCCAGCC CTTTCATTTC chr10:12826505-12827005 + 23 1.50e-04 CATTTGGGAC CATCCAGCC CTTAAATTTT chr15:66293472-66293972 + 42 1.50e-04 gctctgcccg cagcccgcc gcctgcagcc chr19:2841514-2842014 + 64 1.63e-04 CTCCGGGTCC CCGCCCGCC TCTGGCCCCA chr19:488714-489214 + 46 1.63e-04 GGCGTCCGCG CCGCCCGCC CCAAGCCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:68215701-68216201 4e-06 27_[-4]_64 chr6:2998570-2999070 4e-06 51_[+4]_40 chr6:7725936-7726436 4e-06 61_[+4]_30 chr19:4578809-4579309 4e-06 45_[+4]_46 chr7:4681154-4681654 4e-06 79_[-4]_12 chr17:7687593-7688093 4e-06 3_[-4]_88 chr17:82021206-82021706 4e-06 25_[-4]_66 chr16:30985094-30985594 8.7e-06 72_[+4]_19 chr16:21502999-21503499 8.7e-06 6_[-4]_85 chr2:158967976-158968476 8.7e-06 78_[-4]_13 chr7:149090712-149091212 8.7e-06 67_[-4]_24 chr1:42209511-42210011 8.7e-06 30_[-4]_61 chr1:224227688-224228188 8.7e-06 8_[-4]_83 chr13:40972945-40973445 8.7e-06 13_[-4]_78 chr12:6752309-6752809 8.7e-06 10_[-4]_81 chr3:129179369-129179869 8.7e-06 69_[-4]_22 chr1:210337448-210337948 8.7e-06 10_[+4]_81 chr10:15817769-15818269 1.7e-05 13_[-4]_78 chr6:1616912-1617412 1.7e-05 68_[-4]_23 chr20:35615982-35616482 1.7e-05 36_[-4]_55 chr1:180155352-180155852 1.7e-05 27_[+4]_64 chrX:73844978-73845478 1.7e-05 15_[+4]_76 chrX:1246165-1246665 1.7e-05 15_[-4]_76 chr15:96694127-96694627 1.7e-05 87_[+4]_4 chr14:22979585-22980085 1.7e-05 [+4]_91 chr8:102656238-102656738 1.7e-05 47_[+4]_44 chr6:124097807-124098307 3.2e-05 90_[-4]_1 chr1:230072850-230073350 3.2e-05 10_[-4]_81 chr22:38395119-38395619 3.2e-05 70_[+4]_21 chr17:56914157-56914657 3.2e-05 63_[+4]_28 chr19:41310408-41310908 3.2e-05 91_[+4] chr1:26621347-26621847 3.2e-05 76_[+4]_15 chrX:139933229-139933729 3.2e-05 82_[+4]_9 chr1:20731872-20732372 3.2e-05 12_[+4]_79 chr13:96091473-96091973 3.2e-05 35_[-4]_56 chr17:48633104-48633604 3.2e-05 51_[+4]_40 chr16:2768303-2768803 3.2e-05 39_[-4]_52 chr3:196279390-196279890 3.8e-05 70_[-4]_21 chr1:100895844-100896344 3.8e-05 1_[+4]_90 chr4:48779961-48780461 3.8e-05 52_[+4]_39 chr7:101217482-101217982 3.8e-05 32_[-4]_59 chr8:124998684-124999184 3.8e-05 83_[+4]_8 chr7:101085619-101086119 3.8e-05 61_[+4]_30 chr14:24431762-24432262 3.8e-05 69_[-4]_22 chr12:111841890-11184239 4.3e-05 12_[-4]_79 chr17:38730829-38731329 4.3e-05 54_[-4]_37 chr10:75601203-75601703 4.3e-05 90_[+4]_1 chr16:2980440-2980940 5.2e-05 48_[+4]_43 chr12:12721420-12721920 5.2e-05 43_[+4]_48 chr13:93321144-93321644 5.2e-05 14_[+4]_77 chr8:38231582-38232082 5.2e-05 39_[-4]_52 chr17:28662441-28662941 5.2e-05 7_[-4]_84 chr1:47996513-47997013 5.7e-05 73_[+4]_18 chr7:101166190-101166690 6.8e-05 51_[+4]_40 chr1:31413312-31413812 6.8e-05 39_[-4]_52 chr5:72955963-72956463 6.8e-05 79_[+4]_12 chr17:15999655-16000155 6.8e-05 88_[-4]_3 chr19:7501079-7501579 6.8e-05 40_[+4]_51 chr2:60881323-60881823 7.4e-05 13_[+4]_78 chr5:132410434-132410934 7.4e-05 41_[+4]_50 chr1:111619848-111620348 7.4e-05 47_[-4]_44 chrX:133415695-133416195 7.4e-05 19_[+4]_72 chr18:75206720-75207220 8.5e-05 2_[-4]_89 chr10:73909165-73909665 8.5e-05 86_[-4]_5 chr17:28743237-28743737 8.5e-05 13_[+4]_78 chr15:72797023-72797523 8.5e-05 46_[+4]_45 chr1:94927420-94927920 8.5e-05 25_[+4]_66 chr16:8960556-8961056 8.5e-05 61_[-4]_30 chr8:27774404-27774904 8.5e-05 37_[-4]_54 chr10:72059389-72059889 8.5e-05 75_[-4]_16 chr19:6209479-6209979 0.00011 16_[+4]_75 chr9:20610551-20611051 0.00011 57_[+4]_34 chr1:161045703-161046203 0.00011 43_[+4]_48 chr7:44638385-44638885 0.00011 35_[-4]_56 chr7:2632779-2633279 0.00011 9_[-4]_82 chr1:89632847-89633347 0.00011 86_[-4]_5 chr18:48107203-48107703 0.00011 33_[-4]_58 chrX:73852465-73852965 0.00011 21_[+4]_70 chr17:50423925-50424425 0.00011 3_[+4]_88 chr1:243254635-243255135 0.00011 5_[-4]_86 chr16:88712112-88712612 0.00011 74_[-4]_17 chr10:14089161-14089661 0.00012 89_[+4]_2 chr12:4809380-4809880 0.00012 85_[-4]_6 chr19:40541317-40541817 0.00013 1_[+4]_90 chr17:77531233-77531733 0.00013 41_[+4]_50 chr8:22095339-22095839 0.00015 56_[+4]_35 chr10:12826505-12827005 0.00015 22_[+4]_69 chr15:66293472-66293972 0.00015 41_[+4]_50 chr19:2841514-2842014 0.00016 63_[+4]_28 chr19:488714-489214 0.00016 45_[+4]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHTCCYKCC width=9 seqs=90 chr5:68215701-68216201 ( 28) CTTCCTTCC 1 chr6:2998570-2999070 ( 52) CTTCCTTCC 1 chr6:7725936-7726436 ( 62) CTTCCTTCC 1 chr19:4578809-4579309 ( 46) CTTCCTTCC 1 chr7:4681154-4681654 ( 80) CTTCCTTCC 1 chr17:7687593-7688093 ( 4) CTTCCTTCC 1 chr17:82021206-82021706 ( 26) CTTCCTTCC 1 chr16:30985094-30985594 ( 73) CTTCCCTCC 1 chr16:21502999-21503499 ( 7) CTTCCCTCC 1 chr2:158967976-158968476 ( 79) CTTCCCTCC 1 chr7:149090712-149091212 ( 68) CTTCCCTCC 1 chr1:42209511-42210011 ( 31) CTTCCCTCC 1 chr1:224227688-224228188 ( 9) CTTCCCTCC 1 chr13:40972945-40973445 ( 14) CTTCCCTCC 1 chr12:6752309-6752809 ( 11) CTTCCCTCC 1 chr3:129179369-129179869 ( 70) CTTCCCTCC 1 chr1:210337448-210337948 ( 11) CTTCCCTCC 1 chr10:15817769-15818269 ( 14) CATCCTTCC 1 chr6:1616912-1617412 ( 69) CTTCCTGCC 1 chr20:35615982-35616482 ( 37) CTTCCTGCC 1 chr1:180155352-180155852 ( 28) CTTCCTGCC 1 chrX:73844978-73845478 ( 16) CTTCCTGCC 1 chrX:1246165-1246665 ( 16) CTTCCTGCC 1 chr15:96694127-96694627 ( 88) CTTCCTGCC 1 chr14:22979585-22980085 ( 1) CTTCCTGCC 1 chr8:102656238-102656738 ( 48) CATCCTTCC 1 chr6:124097807-124098307 ( 91) CATCCCTCC 1 chr1:230072850-230073350 ( 11) CATCCCTCC 1 chr22:38395119-38395619 ( 71) CCTCCTTCC 1 chr17:56914157-56914657 ( 64) CCTCCTTCC 1 chr19:41310408-41310908 ( 92) CCTCCTTCC 1 chr1:26621347-26621847 ( 77) CCTCCTTCC 1 chrX:139933229-139933729 ( 83) CATCCCTCC 1 chr1:20731872-20732372 ( 13) CTTCCCGCC 1 chr13:96091473-96091973 ( 36) CATCCCTCC 1 chr17:48633104-48633604 ( 52) CCTCCTTCC 1 chr16:2768303-2768803 ( 40) CATCCCTCC 1 chr3:196279390-196279890 ( 71) CCTCCCTCC 1 chr1:100895844-100896344 ( 2) CCTCCCTCC 1 chr4:48779961-48780461 ( 53) CCTCCCTCC 1 chr7:101217482-101217982 ( 33) CCTCCCTCC 1 chr8:124998684-124999184 ( 84) CCTCCCTCC 1 chr7:101085619-101086119 ( 62) CCTCCCTCC 1 chr14:24431762-24432262 ( 70) CCTCCCTCC 1 chr12:111841890-11184239 ( 13) CTGCCTTCC 1 chr17:38730829-38731329 ( 55) CTGCCTTCC 1 chr10:75601203-75601703 ( 91) CTGCCTTCC 1 chr16:2980440-2980940 ( 49) CTGCCCTCC 1 chr12:12721420-12721920 ( 44) CTGCCCTCC 1 chr13:93321144-93321644 ( 15) CTGCCCTCC 1 chr8:38231582-38232082 ( 40) CTGCCCTCC 1 chr17:28662441-28662941 ( 8) CTTCCATCC 1 chr1:47996513-47997013 ( 74) CATCCTGCC 1 chr7:101166190-101166690 ( 52) CCTCCTGCC 1 chr1:31413312-31413812 ( 40) CCTCCTGCC 1 chr5:72955963-72956463 ( 80) CCTCCTGCC 1 chr17:15999655-16000155 ( 89) CCTCCTGCC 1 chr19:7501079-7501579 ( 41) CATCCCGCC 1 chr2:60881323-60881823 ( 14) CCTCCCGCC 1 chr5:132410434-132410934 ( 42) CCTCCCGCC 1 chr1:111619848-111620348 ( 48) CCTCCCGCC 1 chrX:133415695-133416195 ( 20) CCTCCCGCC 1 chr18:75206720-75207220 ( 3) CTGCCTGCC 1 chr10:73909165-73909665 ( 87) CAGCCTTCC 1 chr17:28743237-28743737 ( 14) CTGCCTGCC 1 chr15:72797023-72797523 ( 47) CAGCCTTCC 1 chr1:94927420-94927920 ( 26) CAGCCTTCC 1 chr16:8960556-8961056 ( 62) CAGCCTTCC 1 chr8:27774404-27774904 ( 38) CAGCCTTCC 1 chr10:72059389-72059889 ( 76) CAGCCTTCC 1 chr19:6209479-6209979 ( 17) CATCCATCC 1 chr9:20610551-20611051 ( 58) CTTCCAGCC 1 chr1:161045703-161046203 ( 44) CTTCCAGCC 1 chr7:44638385-44638885 ( 36) CTTCCAGCC 1 chr7:2632779-2633279 ( 10) CTTCCAGCC 1 chr1:89632847-89633347 ( 87) CTTCCAGCC 1 chr18:48107203-48107703 ( 34) CAGCCCTCC 1 chrX:73852465-73852965 ( 22) CTTCCAGCC 1 chr17:50423925-50424425 ( 4) CAGCCCTCC 1 chr1:243254635-243255135 ( 6) CTGCCCGCC 1 chr16:88712112-88712612 ( 75) CAGCCCTCC 1 chr10:14089161-14089661 ( 90) CCGCCCTCC 1 chr12:4809380-4809880 ( 86) CCGCCCTCC 1 chr19:40541317-40541817 ( 2) CTGCCATCC 1 chr17:77531233-77531733 ( 42) CTGCCATCC 1 chr8:22095339-22095839 ( 57) CATCCAGCC 1 chr10:12826505-12827005 ( 23) CATCCAGCC 1 chr15:66293472-66293972 ( 42) CAGCCCGCC 1 chr19:2841514-2842014 ( 64) CCGCCCGCC 1 chr19:488714-489214 ( 46) CCGCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 11.1429 E= 3.4e-013 -1314 189 -1314 -1314 9 -2 -1314 109 -1314 -1314 10 163 -1314 189 -1314 -1314 -1314 189 -1314 -1314 -78 75 -1314 84 -1314 -1314 40 149 -1314 189 -1314 -1314 -1314 189 -1314 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 90 E= 3.4e-013 0.000000 1.000000 0.000000 0.000000 0.244444 0.266667 0.000000 0.488889 0.000000 0.000000 0.288889 0.711111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.455556 0.000000 0.411111 0.000000 0.000000 0.355556 0.644444 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTCCYKCC MEME-4 regular expression -------------------------------------------------------------------------------- C[TCA][TG]CC[CT][TG]CC -------------------------------------------------------------------------------- Time 1227.37 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 width = 29 sites = 6 llr = 173 E-value = 7.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::3:32::::::8::::2::5a::::a: pos.-specific C ::3:73:2::a:a233aa:233::aaa:: probability G aa27:35:8a:2:::7:::7:::2::::a matrix T ::5:3:382::8::7:::8272:8::::: bits 2.1 * * 1.9 ** ** * ** * ***** 1.7 ** ** * ** * ***** 1.5 ** * ***** *** ******* Relative 1.3 ** ******* *** ******* Entropy 1.1 ** ** ************ * ******* (41.5 bits) 0.8 ** ** ************ * ******* 0.6 ***** *********************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GGTGCAGTGGCTCATGCCTGTAATCCCAG consensus CATCT CC CC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr3:129179369-129179869 + 25 4.00e-16 ACACTggcca ggggcagtggctcatgcctgtaatcccag cactttggga chr8:37624057-37624557 + 47 5.46e-16 GTGTAggcca ggtgcagtggctcacgcctgtcatcccag cactttggga chr6:8085173-8085673 - 46 6.54e-15 ATTAAGGCTG GGCATGATGGCTCATGCCTGTAATCCCAG CACTTTGGGA chr19:46781189-46781689 + 67 2.25e-14 aaattagccg ggcatggtggcgcatgcctgtaatcccag ctact chr6:52504290-52504790 + 26 6.25e-13 CAAGAAGCCA GGTGCCTTGGCTCCTCCCACCCATCCCAG ACAGACTTCC chr19:47427172-47427672 + 22 2.38e-12 tgcagcctcg ggtgcctctgctcaccccttctagcccag gtatggcaac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:129179369-129179869 4e-16 24_[+5]_47 chr8:37624057-37624557 5.5e-16 46_[+5]_25 chr6:8085173-8085673 6.5e-15 45_[-5]_26 chr19:46781189-46781689 2.3e-14 66_[+5]_5 chr6:52504290-52504790 6.3e-13 25_[+5]_46 chr19:47427172-47427672 2.4e-12 21_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYRYVKTGGCTCAYSCCTGYMATCCCAG width=29 seqs=6 chr3:129179369-129179869 ( 25) GGGGCAGTGGCTCATGCCTGTAATCCCAG 1 chr8:37624057-37624557 ( 47) GGTGCAGTGGCTCACGCCTGTCATCCCAG 1 chr6:8085173-8085673 ( 46) GGCATGATGGCTCATGCCTGTAATCCCAG 1 chr19:46781189-46781689 ( 67) GGCATGGTGGCGCATGCCTGTAATCCCAG 1 chr6:52504290-52504790 ( 26) GGTGCCTTGGCTCCTCCCACCCATCCCAG 1 chr19:47427172-47427672 ( 22) GGTGCCTCTGCTCACCCCTTCTAGCCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 12.4725 E= 7.4e-005 -923 -923 189 -923 -923 -923 189 -923 -923 30 -70 112 54 -923 130 -923 -923 130 -923 54 54 30 30 -923 -46 -923 89 54 -923 -70 -923 186 -923 -923 162 -46 -923 -923 189 -923 -923 189 -923 -923 -923 -923 -70 186 -923 189 -923 -923 186 -70 -923 -923 -923 30 -923 154 -923 30 130 -923 -923 189 -923 -923 -923 189 -923 -923 -46 -923 -923 186 -923 -70 130 -46 -923 30 -923 154 112 30 -923 -46 212 -923 -923 -923 -923 -923 -70 186 -923 189 -923 -923 -923 189 -923 -923 -923 189 -923 -923 212 -923 -923 -923 -923 -923 189 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 6 E= 7.4e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.166667 0.500000 0.333333 0.000000 0.666667 0.000000 0.000000 0.666667 0.000000 0.333333 0.333333 0.333333 0.333333 0.000000 0.166667 0.000000 0.500000 0.333333 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.166667 0.666667 0.166667 0.000000 0.333333 0.000000 0.666667 0.500000 0.333333 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYRYVKTGGCTCAYSCCTGYMATCCCAG MEME-5 regular expression -------------------------------------------------------------------------------- GG[TC][GA][CT][ACG][GT]TGGCTCA[TC][GC]CCTG[TC][AC]ATCCCAG -------------------------------------------------------------------------------- Time 1491.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGRAARDGRA MEME-6 width = 12 sites = 73 llr = 681 E-value = 2.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::2:57633:39 pos.-specific C :::::::1:1:: probability G :a7a5325476: matrix T a:1:::2131:1 bits 2.1 * 1.9 ** * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 ** *** * (13.5 bits) 0.8 ****** ** 0.6 ******* *** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TGGGGAAGGGGA consensus A AGTAA A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr18:75206720-75207220 + 62 1.46e-07 ACTTGCCCTT TGGGGAAGGGGA AAGGGAGGGG chr10:71999188-71999688 - 66 2.61e-07 AGGAGCTGCA TGGGAAAGAGGA GCCAAGGGAG chr6:124097807-124098307 + 33 4.53e-07 GATGAGCTAC TGGGGAAGAGGA GACCAAGGAG chr8:119416119-119416619 - 20 4.53e-07 ATCGGCTGGG TGGGGAAGTGGA ACGAACCCCG chr13:93321144-93321644 - 44 9.55e-07 AAGCACTACC TGGGAAAGAGAA ATCATTCCTT chr3:194314307-194314807 + 56 1.24e-06 ATTGGAGGTT TGGGAATGGGGA TAAGGGGATG chr7:101166190-101166690 - 63 2.11e-06 CAAACGTCCT TGGGGGAGGGGA GCGGCAGGAG chr19:46849491-46849991 - 54 2.46e-06 GAACTGAGAC TGAGAAAGTGGA GGTCAAAAGG chr2:120253089-120253589 - 26 3.10e-06 GCCGGAGGAC TGAGGAAGTGGA CGGTCCCGAG chr15:67915752-67916252 + 45 3.65e-06 CCAGTATGTG TGGGGGAAGGGA AGCTCTCATT chr12:65826943-65827443 - 36 3.65e-06 ATGGAGTGTC TGGGAATGAGAA ATGGAAGCAA chr5:173315673-173316173 - 23 3.65e-06 AATCATTGGT TGGGGGAAGGGA GGAAACCCCA chr10:99443749-99444249 + 18 4.29e-06 tggttacatc tgggaataggaa tggaagggaa chr17:57530692-57531192 + 12 4.29e-06 ATCCTCAGAA TGGGAGAATGGA GCATTGGGTG chr6:31578538-31579038 + 49 5.06e-06 atctatccaa tggggataggaa tgtccaccac chr7:129228355-129228855 + 1 5.06e-06 . TGGGAAATGGGA AGGTAAGTTC chr6:20404328-20404828 + 49 5.06e-06 GGCAGCACTT TGGGAAATGGGA TGGGTTTGGG chr17:28662441-28662941 + 64 6.52e-06 TTGTTTGTTC TGGGGATATGAA TCCTGTGGAG chr20:51966466-51966966 - 5 6.52e-06 ACAAGGGAAA TGGGAAGAAGGA AGGC chr5:180816534-180817034 - 79 6.52e-06 AGAGGCCAGG TGGGAAACGGGA ACTATGGGAA chr12:31368924-31369424 - 81 7.49e-06 ACAACGGC TGGGGGTGGGGA GCTGTGACTT chr1:6475106-6475606 - 65 7.49e-06 TCCTCCGGGA TGGGGGTGGGGA GGTCTGCATC chr1:3351245-3351745 - 10 7.49e-06 GGACCAGGGA TGGGAAGGAGAA GACCTATGT chr17:1313211-1313711 - 28 8.70e-06 GCATTCCCAC TGGGGAGGTGAA CATTCCCACT chr1:45012668-45013168 + 88 9.95e-06 GCGAGCAGCC TGGGGAGAGGAA A chr14:95154470-95154970 + 71 9.95e-06 cagtttgagt tgggaaagatga aaaagtatgg chr21:42830947-42831447 - 35 1.11e-05 TTTCAGGTTT TGGGGAAAGCGA TTCTGAGAAC chr5:177133354-177133854 + 82 1.26e-05 CCCCGAAGAG TGAGAGAAGGGA ACGCGCG chr1:9690334-9690834 + 41 1.42e-05 CCCTGGATTT TGAGGGAAGGGA GCATCCGAGC chr2:97113095-97113595 + 85 1.58e-05 GTCGGGAGCC TGTGGAAGAGAA GAGC chr20:33685050-33685550 + 4 1.58e-05 GCC TGGGAGGGTGGA GGGTGGCAGA chr5:176648064-176648564 + 65 1.58e-05 GAGCTGGCCT TGGGGAACAGAA TTCAACATTC chr3:194313968-194314468 - 59 1.58e-05 CCCAGCCAGG TGGGGAAATTGA GACCCAGAGA chr16:67150912-67151412 + 52 1.58e-05 TTCGCCTTTC TGGGGATTGGGA AGAAGCATCA chr19:48836347-48836847 - 83 1.74e-05 GGTCTG TGGGAGGAGGGA CTGGGGCTCC chr14:90382791-90383291 + 53 1.90e-05 CCCTAGGACC TGGGAAAAACAA AACGACCCGC chr17:50423925-50424425 - 13 1.90e-05 GCACTGGTTC TGTGGATGGGGA GGAGGGCTGG chr17:49227744-49228244 - 82 2.12e-05 TATCAGC TGGGAATCTGGA AGGTTGGAAG chr10:14089161-14089661 + 67 2.12e-05 TCACCTGCTC TGGGGAAAACAA AGCCCTCTCC chr17:17840278-17840778 + 29 2.12e-05 CGTTGCCAAC TGGGAGATAGGA ATTCGCATCT chr19:17679764-17680264 + 67 2.63e-05 GGGCTCCCAG TGGGAGAGGGGT CTCAGAGGGA chr1:230124569-230125069 + 65 2.63e-05 GTGGCCTGTC TGGGAATGTGGT CTTTCTCTCT chr5:173283864-173284364 + 38 2.63e-05 GTGGGGTTAC TGAGGAGGAGAA TCTTTGGTTC chr14:23301810-23302310 - 80 2.92e-05 CAGCGGGCT TGTGGGAGTGGA TTTGCCAAAG chr1:153123039-153123539 - 27 2.92e-05 AGCTGCTGTG TGGGGATGAGGT GTGGTTCTCA chr1:17540541-17541041 - 6 3.22e-05 CCAAAGCCAG TGGGAAAGTGCA GCCCA chr17:50134379-50134879 - 84 3.22e-05 GGGAG TGAGAGTGGGAA AAAGGGAGAG chr12:6752309-6752809 - 30 3.22e-05 TGGCCCTAAT TGAGAAAGAGGT TTGAAGAGCC chr3:24640416-24640916 + 74 3.22e-05 ATAATAACGG TGAGAAAGGCAA TTAAACTTGT chr8:102656238-102656738 - 3 3.22e-05 GCGCTGCAGA TGGGGAGGGCGA GC chr11:112086821-11208732 + 32 3.59e-05 GGAGATCTCT TGAGGAGAAGAA AATACCGAAA chr12:6632724-6633224 - 37 3.93e-05 CAGAGAAGGG TGGGGAAAGGCA GGAGCAGGAA chr14:64762331-64762831 + 55 4.27e-05 TTTAATCCTA TGGGAATGGAGA CGCAAGGGAC chr16:14185865-14186365 - 20 4.27e-05 ACTAGTTGGC TGGGAGAGTTAA CATTGCCATG chr1:169890869-169891369 - 33 4.27e-05 TTCAAATTCC TGGGGGAGACAA TGATCTGGCC chr2:231243628-231244128 + 3 4.64e-05 tg tgtgaagaagga aattaagaaa chr22:17477629-17478129 - 61 5.01e-05 GATATGGATT TGTGAGAATGAA ATAAACTCAA chr17:28743237-28743737 + 45 5.01e-05 TCTTCAAGGG TGGGGGTGGCGA CCAGGCACCC chr14:39316008-39316508 + 24 5.01e-05 actaactgtg tgaggaagtgat gaggatgcag chr15:82263310-82263810 - 9 5.44e-05 ATAGTGAAGC TGAGGAAGGAGA GGACTGTG chr7:44638385-44638885 - 84 5.44e-05 CTGAG TGAGAAAAATAA GCCTGTTGGT chr5:60946012-60946512 - 79 6.34e-05 AACTTTCAAG TGAGGATGTTGA GACTTGGAGA chr10:95506495-95506995 + 38 6.87e-05 GCCAGAGCTA TGGGAAGAATAA TTTGCTGACC chr11:92376141-92376641 + 74 6.87e-05 GCAGCCTGTG TGGGGAACGCAA GCAAATGTGC chr19:36051408-36051908 + 27 6.87e-05 ctggatttgc tgagggactgga tgaggaatgt chr21:31728703-31729203 - 6 7.39e-05 TCCTAAGGGC TGAGAGAGTGGT GATAC chr16:85172370-85172870 + 21 8.00e-05 CCGGTGGGTC TGGGGAGGTAGA TGTAGGCGTC chr10:121573027-12157352 - 85 8.57e-05 AATT TGTGAAAAGTAA TGGAGGGAGC chr17:39667071-39667571 + 27 1.11e-04 GCTTCCCATC TGGGAGATAGGT GGGGAGACCC chr18:59900590-59901090 - 6 1.11e-04 TGTATCGGGG TGGGGAGTGCGA ATGAA chr6:16684045-16684545 + 86 1.26e-04 TATTGAAACT TGAGAGTCGGAA GTG chr13:113489567-11349006 - 60 1.34e-04 AGGATGCGGC TGTGGGAGTGGT GTCAGATGCT chr12:54204101-54204601 + 79 1.59e-04 AGGGGAGATC AGGGAATATGGA CTTTCCTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:75206720-75207220 1.5e-07 61_[+6]_27 chr10:71999188-71999688 2.6e-07 65_[-6]_23 chr6:124097807-124098307 4.5e-07 32_[+6]_56 chr8:119416119-119416619 4.5e-07 19_[-6]_69 chr13:93321144-93321644 9.6e-07 43_[-6]_45 chr3:194314307-194314807 1.2e-06 55_[+6]_33 chr7:101166190-101166690 2.1e-06 62_[-6]_26 chr19:46849491-46849991 2.5e-06 53_[-6]_35 chr2:120253089-120253589 3.1e-06 25_[-6]_63 chr15:67915752-67916252 3.7e-06 44_[+6]_44 chr12:65826943-65827443 3.7e-06 35_[-6]_53 chr5:173315673-173316173 3.7e-06 22_[-6]_66 chr10:99443749-99444249 4.3e-06 17_[+6]_71 chr17:57530692-57531192 4.3e-06 11_[+6]_77 chr6:31578538-31579038 5.1e-06 48_[+6]_40 chr7:129228355-129228855 5.1e-06 [+6]_88 chr6:20404328-20404828 5.1e-06 48_[+6]_40 chr17:28662441-28662941 6.5e-06 63_[+6]_25 chr20:51966466-51966966 6.5e-06 4_[-6]_84 chr5:180816534-180817034 6.5e-06 78_[-6]_10 chr12:31368924-31369424 7.5e-06 80_[-6]_8 chr1:6475106-6475606 7.5e-06 64_[-6]_24 chr1:3351245-3351745 7.5e-06 9_[-6]_79 chr17:1313211-1313711 8.7e-06 27_[-6]_61 chr1:45012668-45013168 1e-05 87_[+6]_1 chr14:95154470-95154970 1e-05 70_[+6]_18 chr21:42830947-42831447 1.1e-05 34_[-6]_54 chr5:177133354-177133854 1.3e-05 81_[+6]_7 chr1:9690334-9690834 1.4e-05 40_[+6]_48 chr2:97113095-97113595 1.6e-05 84_[+6]_4 chr20:33685050-33685550 1.6e-05 3_[+6]_85 chr5:176648064-176648564 1.6e-05 64_[+6]_24 chr3:194313968-194314468 1.6e-05 58_[-6]_30 chr16:67150912-67151412 1.6e-05 51_[+6]_37 chr19:48836347-48836847 1.7e-05 82_[-6]_6 chr14:90382791-90383291 1.9e-05 52_[+6]_36 chr17:50423925-50424425 1.9e-05 12_[-6]_76 chr17:49227744-49228244 2.1e-05 81_[-6]_7 chr10:14089161-14089661 2.1e-05 66_[+6]_22 chr17:17840278-17840778 2.1e-05 28_[+6]_60 chr19:17679764-17680264 2.6e-05 66_[+6]_22 chr1:230124569-230125069 2.6e-05 64_[+6]_24 chr5:173283864-173284364 2.6e-05 37_[+6]_51 chr14:23301810-23302310 2.9e-05 79_[-6]_9 chr1:153123039-153123539 2.9e-05 26_[-6]_62 chr1:17540541-17541041 3.2e-05 5_[-6]_83 chr17:50134379-50134879 3.2e-05 83_[-6]_5 chr12:6752309-6752809 3.2e-05 29_[-6]_59 chr3:24640416-24640916 3.2e-05 73_[+6]_15 chr8:102656238-102656738 3.2e-05 2_[-6]_86 chr11:112086821-11208732 3.6e-05 31_[+6]_57 chr12:6632724-6633224 3.9e-05 36_[-6]_52 chr14:64762331-64762831 4.3e-05 54_[+6]_34 chr16:14185865-14186365 4.3e-05 19_[-6]_69 chr1:169890869-169891369 4.3e-05 32_[-6]_56 chr2:231243628-231244128 4.6e-05 2_[+6]_86 chr22:17477629-17478129 5e-05 60_[-6]_28 chr17:28743237-28743737 5e-05 44_[+6]_44 chr14:39316008-39316508 5e-05 23_[+6]_65 chr15:82263310-82263810 5.4e-05 8_[-6]_80 chr7:44638385-44638885 5.4e-05 83_[-6]_5 chr5:60946012-60946512 6.3e-05 78_[-6]_10 chr10:95506495-95506995 6.9e-05 37_[+6]_51 chr11:92376141-92376641 6.9e-05 73_[+6]_15 chr19:36051408-36051908 6.9e-05 26_[+6]_62 chr21:31728703-31729203 7.4e-05 5_[-6]_83 chr16:85172370-85172870 8e-05 20_[+6]_68 chr10:121573027-12157352 8.6e-05 84_[-6]_4 chr17:39667071-39667571 0.00011 26_[+6]_62 chr18:59900590-59901090 0.00011 5_[-6]_83 chr6:16684045-16684545 0.00013 85_[+6]_3 chr13:113489567-11349006 0.00013 59_[-6]_29 chr12:54204101-54204601 0.00016 78_[+6]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGRAARDGRA width=12 seqs=73 chr18:75206720-75207220 ( 62) TGGGGAAGGGGA 1 chr10:71999188-71999688 ( 66) TGGGAAAGAGGA 1 chr6:124097807-124098307 ( 33) TGGGGAAGAGGA 1 chr8:119416119-119416619 ( 20) TGGGGAAGTGGA 1 chr13:93321144-93321644 ( 44) TGGGAAAGAGAA 1 chr3:194314307-194314807 ( 56) TGGGAATGGGGA 1 chr7:101166190-101166690 ( 63) TGGGGGAGGGGA 1 chr19:46849491-46849991 ( 54) TGAGAAAGTGGA 1 chr2:120253089-120253589 ( 26) TGAGGAAGTGGA 1 chr15:67915752-67916252 ( 45) TGGGGGAAGGGA 1 chr12:65826943-65827443 ( 36) TGGGAATGAGAA 1 chr5:173315673-173316173 ( 23) TGGGGGAAGGGA 1 chr10:99443749-99444249 ( 18) TGGGAATAGGAA 1 chr17:57530692-57531192 ( 12) TGGGAGAATGGA 1 chr6:31578538-31579038 ( 49) TGGGGATAGGAA 1 chr7:129228355-129228855 ( 1) TGGGAAATGGGA 1 chr6:20404328-20404828 ( 49) TGGGAAATGGGA 1 chr17:28662441-28662941 ( 64) TGGGGATATGAA 1 chr20:51966466-51966966 ( 5) TGGGAAGAAGGA 1 chr5:180816534-180817034 ( 79) TGGGAAACGGGA 1 chr12:31368924-31369424 ( 81) TGGGGGTGGGGA 1 chr1:6475106-6475606 ( 65) TGGGGGTGGGGA 1 chr1:3351245-3351745 ( 10) TGGGAAGGAGAA 1 chr17:1313211-1313711 ( 28) TGGGGAGGTGAA 1 chr1:45012668-45013168 ( 88) TGGGGAGAGGAA 1 chr14:95154470-95154970 ( 71) TGGGAAAGATGA 1 chr21:42830947-42831447 ( 35) TGGGGAAAGCGA 1 chr5:177133354-177133854 ( 82) TGAGAGAAGGGA 1 chr1:9690334-9690834 ( 41) TGAGGGAAGGGA 1 chr2:97113095-97113595 ( 85) TGTGGAAGAGAA 1 chr20:33685050-33685550 ( 4) TGGGAGGGTGGA 1 chr5:176648064-176648564 ( 65) TGGGGAACAGAA 1 chr3:194313968-194314468 ( 59) TGGGGAAATTGA 1 chr16:67150912-67151412 ( 52) TGGGGATTGGGA 1 chr19:48836347-48836847 ( 83) TGGGAGGAGGGA 1 chr14:90382791-90383291 ( 53) TGGGAAAAACAA 1 chr17:50423925-50424425 ( 13) TGTGGATGGGGA 1 chr17:49227744-49228244 ( 82) TGGGAATCTGGA 1 chr10:14089161-14089661 ( 67) TGGGGAAAACAA 1 chr17:17840278-17840778 ( 29) TGGGAGATAGGA 1 chr19:17679764-17680264 ( 67) TGGGAGAGGGGT 1 chr1:230124569-230125069 ( 65) TGGGAATGTGGT 1 chr5:173283864-173284364 ( 38) TGAGGAGGAGAA 1 chr14:23301810-23302310 ( 80) TGTGGGAGTGGA 1 chr1:153123039-153123539 ( 27) TGGGGATGAGGT 1 chr1:17540541-17541041 ( 6) TGGGAAAGTGCA 1 chr17:50134379-50134879 ( 84) TGAGAGTGGGAA 1 chr12:6752309-6752809 ( 30) TGAGAAAGAGGT 1 chr3:24640416-24640916 ( 74) TGAGAAAGGCAA 1 chr8:102656238-102656738 ( 3) TGGGGAGGGCGA 1 chr11:112086821-11208732 ( 32) TGAGGAGAAGAA 1 chr12:6632724-6633224 ( 37) TGGGGAAAGGCA 1 chr14:64762331-64762831 ( 55) TGGGAATGGAGA 1 chr16:14185865-14186365 ( 20) TGGGAGAGTTAA 1 chr1:169890869-169891369 ( 33) TGGGGGAGACAA 1 chr2:231243628-231244128 ( 3) TGTGAAGAAGGA 1 chr22:17477629-17478129 ( 61) TGTGAGAATGAA 1 chr17:28743237-28743737 ( 45) TGGGGGTGGCGA 1 chr14:39316008-39316508 ( 24) TGAGGAAGTGAT 1 chr15:82263310-82263810 ( 9) TGAGGAAGGAGA 1 chr7:44638385-44638885 ( 84) TGAGAAAAATAA 1 chr5:60946012-60946512 ( 79) TGAGGATGTTGA 1 chr10:95506495-95506995 ( 38) TGGGAAGAATAA 1 chr11:92376141-92376641 ( 74) TGGGGAACGCAA 1 chr19:36051408-36051908 ( 27) TGAGGGACTGGA 1 chr21:31728703-31729203 ( 6) TGAGAGAGTGGT 1 chr16:85172370-85172870 ( 21) TGGGGAGGTAGA 1 chr10:121573027-12157352 ( 85) TGTGAAAAGTAA 1 chr17:39667071-39667571 ( 27) TGGGAGATAGGT 1 chr18:59900590-59901090 ( 6) TGGGGAGTGCGA 1 chr6:16684045-16684545 ( 86) TGAGAGTCGGAA 1 chr13:113489567-11349006 ( 60) TGTGGGAGTGGT 1 chr12:54204101-54204601 ( 79) AGGGAATATGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 10.3743 E= 2.2e-004 -406 -1283 -1283 210 -1283 -1283 189 -1283 -7 -1283 134 -126 -1283 -1283 189 -1283 110 -1283 91 -1283 158 -1283 22 -1283 132 -1283 -60 10 46 -172 95 -148 32 -1283 65 32 -248 -113 145 -126 58 -330 122 -1283 195 -1283 -1283 -107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 73 E= 2.2e-004 0.013699 0.000000 0.000000 0.986301 0.000000 0.000000 1.000000 0.000000 0.219178 0.000000 0.684932 0.095890 0.000000 0.000000 1.000000 0.000000 0.493151 0.000000 0.506849 0.000000 0.684932 0.000000 0.315068 0.000000 0.575342 0.000000 0.178082 0.246575 0.315068 0.082192 0.520548 0.082192 0.287671 0.000000 0.424658 0.287671 0.041096 0.123288 0.739726 0.095890 0.342466 0.027397 0.630137 0.000000 0.890411 0.000000 0.000000 0.109589 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGRAARDGRA MEME-6 regular expression -------------------------------------------------------------------------------- TG[GA]G[GA][AG][AT][GA][GAT]G[GA]A -------------------------------------------------------------------------------- Time 1755.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TTBCASWCCAGCCTGRGCAACA MEME-7 width = 22 sites = 6 llr = 137 E-value = 3.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::::8:3::a:::::3::88:a pos.-specific C 2:3827:8a::aa:2228::a: probability G ::32:3::::a:::85822::: matrix T 8a3:::72:::::a:::::2:: bits 2.1 * * * * 1.9 * ****** ** 1.7 * ****** ** 1.5 ** * ****** **** Relative 1.3 ** ** ********* ****** Entropy 1.1 ** ************ ****** (33.0 bits) 0.8 ** ************ ****** 0.6 ** ************ ****** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TTCCACTCCAGCCTGGGCAACA consensus G GA A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:18372909-18373409 + 18 1.63e-12 agcacaggag ttccagaccagcctgggcaaca tagcaagatt chr19:3045510-3046010 + 78 2.11e-12 gattgcacca ttgcacttcagcctgggcaaca a chr17:1413396-1413896 - 71 3.73e-12 TCACACCA TTTCACTCCAGCCTGAGCATCA CAGCAAGACT chr15:63521749-63522249 - 28 4.53e-12 GATAGCGCCA CTGCACTCCAGCCTGGGCAACA AAGCAAGATT chr19:46781189-46781689 + 5 8.78e-11 ggag tttgagaccagcctgaccaaca tggagaaacc chr19:14333579-14334079 - 37 5.73e-10 CGCCTGGGTC TTCCCCTCCAGCCTCCGGGACA AGGGGAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18372909-18373409 1.6e-12 17_[+7]_61 chr19:3045510-3046010 2.1e-12 77_[+7]_1 chr17:1413396-1413896 3.7e-12 70_[-7]_8 chr15:63521749-63522249 4.5e-12 27_[-7]_51 chr19:46781189-46781689 8.8e-11 4_[+7]_74 chr19:14333579-14334079 5.7e-10 36_[-7]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTBCASWCCAGCCTGRGCAACA width=22 seqs=6 chr19:18372909-18373409 ( 18) TTCCAGACCAGCCTGGGCAACA 1 chr19:3045510-3046010 ( 78) TTGCACTTCAGCCTGGGCAACA 1 chr17:1413396-1413896 ( 71) TTTCACTCCAGCCTGAGCATCA 1 chr15:63521749-63522249 ( 28) CTGCACTCCAGCCTGGGCAACA 1 chr19:46781189-46781689 ( 5) TTTGAGACCAGCCTGACCAACA 1 chr19:14333579-14334079 ( 37) TTCCCCTCCAGCCTCCGGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.395 E= 3.9e+000 -923 -70 -923 186 -923 -923 -923 212 -923 30 30 54 -923 162 -70 -923 186 -70 -923 -923 -923 130 30 -923 54 -923 -923 154 -923 162 -923 -46 -923 189 -923 -923 212 -923 -923 -923 -923 -923 189 -923 -923 189 -923 -923 -923 189 -923 -923 -923 -923 -923 212 -923 -70 162 -923 54 -70 89 -923 -923 -70 162 -923 -923 162 -70 -923 186 -923 -70 -923 186 -923 -923 -46 -923 189 -923 -923 212 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 6 E= 3.9e+000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.833333 0.166667 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.333333 0.166667 0.500000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.833333 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBCASWCCAGCCTGRGCAACA MEME-7 regular expression -------------------------------------------------------------------------------- TT[CGT]CA[CG][TA]CCAGCCTG[GA]GCAACA -------------------------------------------------------------------------------- Time 2014.84 secs. ******************************************************************************** ******************************************************************************** MOTIF WTWTTYADDTGBTTWNTAMABT MEME-8 width = 22 sites = 20 llr = 277 E-value = 5.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 3153:194311::162385a21 pos.-specific C 132:1411:::4:1:2:23:2: probability G ::::21144:94:113::1:42 matrix T 673775:23913a843812:37 bits 2.1 * * 1.9 * * 1.7 * * * 1.5 * * * * Relative 1.3 * * ** * * * Entropy 1.1 * * ** * ** * (20.0 bits) 0.8 ** ** * ** *** ** * * 0.6 ***** * ** *** ** * * 0.4 ***** * ******* **** * 0.2 *************** **** * 0.0 ---------------------- Multilevel TTATTTAAGTGCTTAGTAAAGT consensus ACTAGC GA G TTACC TG sequence C TT T A C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr18:22183023-22183523 - 3 3.01e-09 GATACCGATC TTAATTAAGAGGTTTGTAAAGT AC chr5:123809793-123810293 + 32 3.99e-09 AGGCTGTAAT TAAATTATTTGCTTACTAAAGT GTTTCTAATG chr14:49586811-49587311 - 20 5.25e-09 ATTACAGCTG ATTTTAAGTTGTTTTGTAAATT TATTCCAGTA chr5:124736976-124737476 + 35 1.00e-08 TAATCAATAT ATTTTTACTTGCTTTTTAAACT GTAAAAGCTA chr7:116220311-116220811 + 60 2.62e-08 ataaagtagt acatgtaaatgtttagaacagt gcctgacata chr3:173396735-173397235 - 70 2.93e-08 GGGACTGGC ATCTTCAGATGTTTAAAACACT TATTTAGGTA chr7:5426131-5426631 + 30 6.24e-08 GTGCCATAAA TCATTTAGTTGCTAATAAAAAT TCTGCCTGTT chr17:12022419-12022919 - 12 1.52e-07 CATGAGCGTT TTATGCAGATGCTCAATAAATA TTTTTTGAAC chr12:85833668-85834168 + 68 2.00e-07 GTTTCTGTGC TTTAGAATGTGGTTATTCAAAT CATTATGGAA chr1:15849588-15850088 - 26 2.00e-07 TAAAGTGAGC ACATCTAAGTGGTTTTTCCACT CCAATAATGT chr10:100907989-10090848 + 39 2.19e-07 tgagtcagta ctcatgaagtgcttagaacagt ctctggccca chr1:25232777-25233277 - 7 2.85e-07 AACCTCCCGG TCTTTCATTAGTTTTATAAAGG CAGTTT chr7:116954786-116955286 - 38 3.11e-07 TGAGCAGCAC CTATTCAAATGGTGAGACAATT CTAGAGTGCT chr6:26328757-26329257 - 17 3.39e-07 GCTGAGAATG TTCTTTGGGTGTTTTCTATAAT GCAAATCAGG chr3:169165361-169165861 + 3 4.02e-07 CT TTTTTGAAGTGCTGTATACACG ATCTTGCAAG chr18:35583201-35583701 + 37 4.36e-07 cactcaccat ttatgcaaatacttgttaaatg cctggctttc chr3:111692879-111693379 + 30 7.63e-07 CTGGCCTCTG TTATCTAAATACTTATTCTAGA TAAGACAATC chr5:67530615-67531115 + 72 9.58e-07 ACTAACCTAG ATTTTCCTGTGGTCAGTATAGT ATAGGAG chrX:139201991-139202491 - 21 9.58e-07 GTTCCTGATT TCCATCAGGTGGTTACTTCAGG TTTATTTCAG chr21:39176500-39177000 - 1 1.03e-06 CCAGGTCTCA TAAATTAGTTTGTTACTAGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:22183023-22183523 3e-09 2_[-8]_76 chr5:123809793-123810293 4e-09 31_[+8]_47 chr14:49586811-49587311 5.2e-09 19_[-8]_59 chr5:124736976-124737476 1e-08 34_[+8]_44 chr7:116220311-116220811 2.6e-08 59_[+8]_19 chr3:173396735-173397235 2.9e-08 69_[-8]_9 chr7:5426131-5426631 6.2e-08 29_[+8]_49 chr17:12022419-12022919 1.5e-07 11_[-8]_67 chr12:85833668-85834168 2e-07 67_[+8]_11 chr1:15849588-15850088 2e-07 25_[-8]_53 chr10:100907989-10090848 2.2e-07 38_[+8]_40 chr1:25232777-25233277 2.9e-07 6_[-8]_72 chr7:116954786-116955286 3.1e-07 37_[-8]_41 chr6:26328757-26329257 3.4e-07 16_[-8]_62 chr3:169165361-169165861 4e-07 2_[+8]_76 chr18:35583201-35583701 4.4e-07 36_[+8]_42 chr3:111692879-111693379 7.6e-07 29_[+8]_49 chr5:67530615-67531115 9.6e-07 71_[+8]_7 chrX:139201991-139202491 9.6e-07 20_[-8]_58 chr21:39176500-39177000 1e-06 [-8]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTWTTYADDTGBTTWNTAMABT width=22 seqs=20 chr18:22183023-22183523 ( 3) TTAATTAAGAGGTTTGTAAAGT 1 chr5:123809793-123810293 ( 32) TAAATTATTTGCTTACTAAAGT 1 chr14:49586811-49587311 ( 20) ATTTTAAGTTGTTTTGTAAATT 1 chr5:124736976-124737476 ( 35) ATTTTTACTTGCTTTTTAAACT 1 chr7:116220311-116220811 ( 60) ACATGTAAATGTTTAGAACAGT 1 chr3:173396735-173397235 ( 70) ATCTTCAGATGTTTAAAACACT 1 chr7:5426131-5426631 ( 30) TCATTTAGTTGCTAATAAAAAT 1 chr17:12022419-12022919 ( 12) TTATGCAGATGCTCAATAAATA 1 chr12:85833668-85834168 ( 68) TTTAGAATGTGGTTATTCAAAT 1 chr1:15849588-15850088 ( 26) ACATCTAAGTGGTTTTTCCACT 1 chr10:100907989-10090848 ( 39) CTCATGAAGTGCTTAGAACAGT 1 chr1:25232777-25233277 ( 7) TCTTTCATTAGTTTTATAAAGG 1 chr7:116954786-116955286 ( 38) CTATTCAAATGGTGAGACAATT 1 chr6:26328757-26329257 ( 17) TTCTTTGGGTGTTTTCTATAAT 1 chr3:169165361-169165861 ( 3) TTTTTGAAGTGCTGTATACACG 1 chr18:35583201-35583701 ( 37) TTATGCAAATACTTGTTAAATG 1 chr3:111692879-111693379 ( 30) TTATCTAAATACTTATTCTAGA 1 chr5:67530615-67531115 ( 72) ATTTTCCTGTGGTCAGTATAGT 1 chrX:139201991-139202491 ( 21) TCCATCAGGTGGTTACTTCAGG 1 chr21:39176500-39177000 ( 1) TAAATTAGTTTGTTACTAGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.047 E= 5.1e+002 39 -143 -1097 138 -120 -11 -1097 150 112 -43 -1097 39 39 -1097 -1097 161 -1097 -143 -43 161 -120 37 -143 97 197 -243 -243 -1097 80 -243 37 -20 39 -1097 57 39 -120 -1097 -1097 197 -120 -1097 165 -220 -1097 57 37 12 -1097 -1097 -1097 212 -220 -143 -143 171 138 -1097 -243 61 -20 -43 15 39 12 -1097 -1097 171 171 -43 -1097 -220 112 15 -243 -61 212 -1097 -1097 -1097 -61 -43 57 12 -120 -1097 -43 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 20 E= 5.1e+002 0.300000 0.100000 0.000000 0.600000 0.100000 0.250000 0.000000 0.650000 0.500000 0.200000 0.000000 0.300000 0.300000 0.000000 0.000000 0.700000 0.000000 0.100000 0.200000 0.700000 0.100000 0.350000 0.100000 0.450000 0.900000 0.050000 0.050000 0.000000 0.400000 0.050000 0.350000 0.200000 0.300000 0.000000 0.400000 0.300000 0.100000 0.000000 0.000000 0.900000 0.100000 0.000000 0.850000 0.050000 0.000000 0.400000 0.350000 0.250000 0.000000 0.000000 0.000000 1.000000 0.050000 0.100000 0.100000 0.750000 0.600000 0.000000 0.050000 0.350000 0.200000 0.200000 0.300000 0.300000 0.250000 0.000000 0.000000 0.750000 0.750000 0.200000 0.000000 0.050000 0.500000 0.300000 0.050000 0.150000 1.000000 0.000000 0.000000 0.000000 0.150000 0.200000 0.400000 0.250000 0.100000 0.000000 0.200000 0.700000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTWTTYADDTGBTTWNTAMABT MEME-8 regular expression -------------------------------------------------------------------------------- [TA][TC][ATC][TA][TG][TC]A[AGT][GAT]TG[CGT]TT[AT][GTAC][TA][AC][AC]A[GTC][TG] -------------------------------------------------------------------------------- Time 2273.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CMAAKTAANARCAAKKTDYTTT MEME-9 width = 22 sites = 6 llr = 125 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 Description -------------------------------------------------------------------------------- Simplified A 23aa:2aa385:8a2223:::: pos.-specific C 87::::::222a::::::72:2 probability G ::::7:::2:3:2:33:3:::: matrix T ::::38::3:::::558338a8 bits 2.1 ** ** * * 1.9 ** ** * * * 1.7 ** ** * * * 1.5 ** *** * *** * *** Relative 1.3 * ** *** * *** * *** Entropy 1.1 ******** * *** * **** (30.0 bits) 0.8 ******** * *** * **** 0.6 ******** ******** **** 0.4 ******** ************* 0.2 ********************** 0.0 ---------------------- Multilevel CCAAGTAAAAACAATTTACTTT consensus A T T G GG GT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:140071067-140071567 + 51 9.45e-12 GGGATGCTTG CCAAGAAAAAACAATTTGCTTT GCTGCAAGAA chr3:24640416-24640916 - 8 2.81e-11 CCTGACACTT CCAAGTAAGAGCAAATTACTTT GCATACA chr18:22183023-22183523 + 57 3.17e-10 TTAAATTAAC CCAAGTAAAAGCAAGAAGTTTT GGTTTAAAGT chr12:2251964-2252464 + 30 3.68e-10 TGCTGTAACC CCAATTAATAACGATTTTTTTC CACCAGAGAT chr3:160684162-160684662 + 79 5.93e-10 aagagagggt aaaattaacaccaatgtacttt chr1:210337448-210337948 - 23 5.93e-10 TGGGTGGGCC CAAAGTAATCACAAGGTTCCTT ACAGGAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:140071067-140071567 9.5e-12 50_[+9]_28 chr3:24640416-24640916 2.8e-11 7_[-9]_71 chr18:22183023-22183523 3.2e-10 56_[+9]_22 chr12:2251964-2252464 3.7e-10 29_[+9]_49 chr3:160684162-160684662 5.9e-10 78_[+9] chr1:210337448-210337948 5.9e-10 22_[-9]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMAAKTAANARCAAKKTDYTTT width=22 seqs=6 chr6:140071067-140071567 ( 51) CCAAGAAAAAACAATTTGCTTT 1 chr3:24640416-24640916 ( 8) CCAAGTAAGAGCAAATTACTTT 1 chr18:22183023-22183523 ( 57) CCAAGTAAAAGCAAGAAGTTTT 1 chr12:2251964-2252464 ( 30) CCAATTAATAACGATTTTTTTC 1 chr3:160684162-160684662 ( 79) AAAATTAACACCAATGTACTTT 1 chr1:210337448-210337948 ( 23) CAAAGTAATCACAAGGTTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.395 E= 1.9e+004 -46 162 -923 -923 54 130 -923 -923 212 -923 -923 -923 212 -923 -923 -923 -923 -923 130 54 -46 -923 -923 186 212 -923 -923 -923 212 -923 -923 -923 54 -70 -70 54 186 -70 -923 -923 112 -70 30 -923 -923 189 -923 -923 186 -923 -70 -923 212 -923 -923 -923 -46 -923 30 112 -46 -923 30 112 -46 -923 -923 186 54 -923 30 54 -923 130 -923 54 -923 -70 -923 186 -923 -923 -923 212 -923 -70 -923 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 6 E= 1.9e+004 0.166667 0.833333 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.166667 0.000000 0.000000 0.833333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.166667 0.166667 0.333333 0.833333 0.166667 0.000000 0.000000 0.500000 0.166667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.333333 0.500000 0.166667 0.000000 0.333333 0.500000 0.166667 0.000000 0.000000 0.833333 0.333333 0.000000 0.333333 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMAAKTAANARCAAKKTDYTTT MEME-9 regular expression -------------------------------------------------------------------------------- C[CA]AA[GT]TAA[AT]A[AG]CAA[TG][TG]T[AGT][CT]TTT -------------------------------------------------------------------------------- Time 2530.56 secs. ******************************************************************************** ******************************************************************************** MOTIF AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 width = 31 sites = 8 llr = 178 E-value = 6.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 Description -------------------------------------------------------------------------------- Simplified A 83:a:3:4155514::::315::341:9:6a pos.-specific C :16:9:5:31:316::::6641:6:83:31: probability G 114::1314:413::9:413:1:::::1::: matrix T 15::163534115:a1a6::18a1618:83: bits 2.1 * * * * * 1.9 * * * * * 1.7 * * * * * 1.5 * * * * * * Relative 1.3 ** *** * * *** * Entropy 1.1 * ** ***** ** * *** * (32.1 bits) 0.8 * **** ***** ** ******* 0.6 * **** * ** ****************** 0.4 * ****** ** ****************** 0.2 ******** ********************** 0.0 ------------------------------- Multilevel ATCACTCTGAAATCTGTTCCATTCTCTATAA consensus AG AGACTGCGA GAGC AA C CT sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr11:27088552-27089052 + 36 1.72e-14 cattagctgc atgacttggaactctgttcccttctctataa cacagcaaca chr17:12022419-12022919 - 50 2.39e-12 AACCTCCATG AGGACAGTTAGAGATGTTCAATTCTCTATAA ACTCAGCATG chr2:212135849-212136349 + 36 5.61e-12 GTGATGCCTT ATCACTGTGAGACCTTTGCCATTCACTGTAA TTAAAGCGGC chr3:71051010-71051510 + 1 1.02e-11 . GACACTTTTTAATCTGTTCCCTTTTTtatta tagcagcacc chr13:113493343-11349384 - 41 1.89e-10 TGCTGTTCCA ATCACTCAATTTTATGTTAGTTTCAATACAA CTTTAAGTAC chr19:12955276-12955776 + 55 2.18e-10 acCTACCCCC TTCACGCTCCAGGATGTGGCATTATCTATAA GAGATGCCCC chr15:67791642-67792142 + 42 3.48e-10 AGCTATTAGG AAGATTCACTGATCTGTTCCCCTCACCACCA GGGAGAATGT chr10:75601203-75601703 - 52 5.08e-10 AGGTACTAGA ACCACACAGAACACTGTGAGAGTATCCATTA TTCCCATTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:27088552-27089052 1.7e-14 35_[+10]_34 chr17:12022419-12022919 2.4e-12 49_[-10]_20 chr2:212135849-212136349 5.6e-12 35_[+10]_34 chr3:71051010-71051510 1e-11 [+10]_69 chr13:113493343-11349384 1.9e-10 40_[-10]_29 chr19:12955276-12955776 2.2e-10 54_[+10]_15 chr15:67791642-67792142 3.5e-10 41_[+10]_28 chr10:75601203-75601703 5.1e-10 51_[-10]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWSACTBWBWRMKMTGTKCCMTTCWCTATAA width=31 seqs=8 chr11:27088552-27089052 ( 36) ATGACTTGGAACTCTGTTCCCTTCTCTATAA 1 chr17:12022419-12022919 ( 50) AGGACAGTTAGAGATGTTCAATTCTCTATAA 1 chr2:212135849-212136349 ( 36) ATCACTGTGAGACCTTTGCCATTCACTGTAA 1 chr3:71051010-71051510 ( 1) GACACTTTTTAATCTGTTCCCTTTTTTATTA 1 chr13:113493343-11349384 ( 41) ATCACTCAATTTTATGTTAGTTTCAATACAA 1 chr19:12955276-12955776 ( 55) TTCACGCTCCAGGATGTGGCATTATCTATAA 1 chr15:67791642-67792142 ( 42) AAGATTCACTGATCTGTTCCCCTCACCACCA 1 chr10:75601203-75601703 ( 52) ACCACACAGAACACTGTGAGAGTATCCATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 13.0949 E= 6.7e+004 171 -965 -111 -88 12 -111 -111 112 -965 121 47 -965 212 -965 -965 -965 -965 169 -965 -88 12 -965 -111 144 -965 89 -11 12 71 -965 -111 112 -88 -11 47 12 112 -111 -965 71 112 -965 47 -88 112 -11 -111 -88 -88 -111 -11 112 71 121 -965 -965 -965 -965 -965 212 -965 -965 169 -88 -965 -965 -965 212 -965 -965 47 144 12 121 -111 -965 -88 121 -11 -965 112 47 -965 -88 -965 -111 -111 171 -965 -965 -965 212 12 121 -965 -88 71 -965 -965 144 -88 147 -965 -88 -965 -11 -965 171 193 -965 -111 -965 -965 -11 -965 171 144 -111 -965 12 212 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 8 E= 6.7e+004 0.750000 0.000000 0.125000 0.125000 0.250000 0.125000 0.125000 0.500000 0.000000 0.625000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.250000 0.000000 0.125000 0.625000 0.000000 0.500000 0.250000 0.250000 0.375000 0.000000 0.125000 0.500000 0.125000 0.250000 0.375000 0.250000 0.500000 0.125000 0.000000 0.375000 0.500000 0.000000 0.375000 0.125000 0.500000 0.250000 0.125000 0.125000 0.125000 0.125000 0.250000 0.500000 0.375000 0.625000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.250000 0.625000 0.125000 0.000000 0.125000 0.625000 0.250000 0.000000 0.500000 0.375000 0.000000 0.125000 0.000000 0.125000 0.125000 0.750000 0.000000 0.000000 0.000000 1.000000 0.250000 0.625000 0.000000 0.125000 0.375000 0.000000 0.000000 0.625000 0.125000 0.750000 0.000000 0.125000 0.000000 0.250000 0.000000 0.750000 0.875000 0.000000 0.125000 0.000000 0.000000 0.250000 0.000000 0.750000 0.625000 0.125000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWSACTBWBWRMKMTGTKCCMTTCWCTATAA MEME-10 regular expression -------------------------------------------------------------------------------- A[TA][CG]AC[TA][CGT][TA][GCT][AT][AG][AC][TG][CA]TGT[TG][CA][CG][AC]TT[CA][TA]C[TC]A[TC][AT]A -------------------------------------------------------------------------------- Time 2786.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:44435433-44435933 5.36e-02 100 chr2:120253089-120253589 1.93e-03 2_[-1(8.24e-05)]_1_[-6(3.10e-06)]_\ [+1(1.51e-05)]_41 chr10:72059389-72059889 2.48e-01 75_[-4(8.47e-05)]_16 chr5:123809793-123810293 9.69e-05 31_[+8(3.99e-09)]_[-3(1.56e-05)]_25 chr6:47242805-47243305 6.13e-02 41_[-9(7.81e-05)]_37 chr16:2768303-2768803 6.81e-03 39_[-4(3.24e-05)]_52 chr17:78162392-78162892 6.89e-02 44_[+3(1.29e-05)]_34 chr16:88712112-88712612 1.07e-01 100 chr17:82030701-82031201 1.35e-01 36_[+1(4.43e-05)]_42 chr19:7501079-7501579 2.95e-02 40_[+4(6.80e-05)]_25_[-1(1.36e-05)]_\ 4 chr6:71288498-71288998 1.16e-06 1_[+2(2.06e-08)]_21_[-1(9.90e-07)]_\ 25 chr19:46849491-46849991 7.21e-03 1_[-2(2.39e-05)]_21_[-6(2.46e-06)]_\ 35 chr1:36224758-36225258 9.81e-02 1_[+7(9.88e-05)]_77 chrX:150772408-150772908 2.10e-01 100 chr1:110407489-110407989 6.93e-01 100 chr16:15650409-15650909 1.07e-01 61_[-2(3.65e-05)]_8 chr19:50384416-50384916 4.67e-02 18_[+1(1.48e-06)]_60 chr19:40606380-40606880 7.37e-01 100 chr6:44800154-44800654 4.25e-02 65_[+2(6.44e-05)]_4 chr1:243254635-243255135 1.35e-03 15_[+1(2.46e-06)]_35_[-1(4.36e-08)]_\ 6 chr8:18083497-18083997 7.90e-01 100 chr10:33339460-33339960 7.48e-04 62_[+2(1.51e-06)]_7 chr6:38639659-38640159 7.75e-02 [-1(3.34e-05)]_22_[-1(8.63e-07)]_34 chr7:20964236-20964736 7.77e-01 100 chr11:125569236-12556973 6.23e-01 41_[+1(1.51e-05)]_37 chr3:173396735-173397235 3.40e-06 40_[+3(1.60e-07)]_7_[-8(2.93e-08)]_\ 9 chr8:37624057-37624557 1.86e-09 46_[+5(5.46e-16)]_25 chr5:173283864-173284364 3.24e-01 37_[+6(2.63e-05)]_51 chrX:135051555-135052055 2.64e-01 100 chr17:50423925-50424425 3.38e-03 12_[-6(1.90e-05)]_76 chr17:40344281-40344781 9.11e-02 100 chr8:102656238-102656738 3.39e-05 2_[-6(3.22e-05)]_9_[-1(6.54e-07)]_2_\ [+4(1.75e-05)]_44 chr16:67150912-67151412 1.19e-01 51_[+6(1.58e-05)]_37 chr17:82021206-82021706 6.98e-03 1_[-1(3.34e-05)]_2_[-4(4.02e-06)]_\ 66 chr5:143130754-143131254 9.50e-01 100 chrX:139201991-139202491 1.35e-02 20_[-8(9.58e-07)]_58 chr12:15175645-15176145 1.22e-01 100 chr1:50978242-50978742 9.03e-02 54_[+5(5.09e-05)]_17 chr5:173315673-173316173 4.40e-03 22_[-6(3.65e-06)]_8_[-6(6.52e-06)]_\ 46 chr10:60944164-60944664 7.69e-01 100 chr1:112952254-112952754 3.02e-02 19_[+3(1.06e-05)]_19_[-3(9.21e-05)]_\ 18 chr1:151945959-151946459 4.60e-02 41_[-9(9.78e-05)]_3_[+3(6.25e-05)]_\ 12 chr9:125746338-125746838 9.54e-03 13_[+1(1.22e-07)]_32_[+1(1.67e-05)]_\ 11 chr6:80106901-80107401 2.32e-02 46_[-7(7.36e-05)]_32 chrX:73852465-73852965 2.29e-01 100 chr5:174056647-174057147 3.89e-02 2_[-3(7.89e-06)]_76 chrX:78104743-78105243 5.78e-01 100 chr12:53492953-53493453 2.19e-01 56_[+1(1.22e-05)]_22 chr5:124736976-124737476 4.00e-07 10_[+3(7.89e-06)]_2_[+8(1.00e-08)]_\ 44 chr17:48990788-48991288 2.22e-04 21_[-3(2.47e-05)]_26_[+2(3.97e-07)] chr19:41264352-41264852 6.37e-01 77_[+1(6.93e-05)]_1 chr8:27774404-27774904 1.08e-01 37_[-4(8.47e-05)]_54 chr10:14952998-14953498 1.61e-01 100 chr12:2251964-2252464 1.95e-04 29_[+9(3.68e-10)]_49 chr19:39306272-39306772 3.50e-02 38_[-3(4.91e-05)]_40 chr5:93045303-93045803 4.54e-01 100 chr5:126055431-126055931 9.13e-01 100 chr1:15849588-15850088 1.47e-03 25_[-8(2.00e-07)]_53 chr1:3351245-3351745 2.14e-02 9_[-6(7.49e-06)]_79 chr2:118185436-118185936 5.19e-03 36_[-3(2.95e-05)]_42 chr1:1064336-1064836 1.52e-01 100 chr6:31581032-31581532 8.48e-04 24_[+1(1.91e-06)]_54 chr14:22979585-22980085 8.22e-03 [+4(1.75e-05)]_2_[-2(5.16e-05)]_58 chr17:15999655-16000155 2.19e-03 38_[+1(7.39e-08)]_7_[-1(4.85e-05)]_\ 11 chr1:210337448-210337948 2.97e-07 10_[+4(8.73e-06)]_3_[-9(5.93e-10)]_\ 56 chr3:129179369-129179869 5.17e-10 24_[+5(4.00e-16)]_16_[-4(8.73e-06)]_\ 22 chr15:66293472-66293972 4.11e-04 27_[-1(5.81e-05)]_18_[+1(1.45e-09)]_\ 11 chr16:8960556-8961056 1.29e-02 61_[-4(8.47e-05)]_30 chr7:100888410-100888910 9.84e-04 85_[+4(1.75e-05)]_6 chr1:169890869-169891369 8.68e-02 32_[-6(4.27e-05)]_56 chr7:157010329-157010829 9.08e-02 9_[-1(1.22e-07)]_69 chr8:102239460-102239960 7.04e-01 100 chr19:36051408-36051908 3.55e-01 26_[+6(6.87e-05)]_62 chr1:231394783-231395283 8.53e-02 100 chr7:70099124-70099624 5.74e-01 100 chr19:14333579-14334079 3.21e-04 36_[-7(5.73e-10)]_42 chr12:54204101-54204601 6.11e-02 100 chr1:182603092-182603592 5.07e-02 38_[+3(5.32e-05)]_40 chr17:31550037-31550537 2.67e-01 33_[+1(2.50e-05)]_45 chr6:110959013-110959513 1.43e-04 11_[+3(1.34e-06)]_67 chr12:68207257-68207757 6.12e-02 100 chr1:211577585-211578085 2.27e-02 35_[+1(5.31e-05)]_15_[+1(1.68e-06)]_\ 6 chr19:16077362-16077862 4.53e-01 100 chr19:47427172-47427672 1.17e-05 21_[+5(2.38e-12)]_50 chr2:42141854-42142354 2.52e-01 100 chr5:17097039-17097539 6.04e-02 100 chr4:143336163-143336663 3.33e-03 4_[+1(8.63e-07)]_10_[-5(3.78e-05)]_\ 35 chr1:234755598-234756098 3.75e-02 100 chr1:168172764-168173264 5.03e-06 10_[-3(8.20e-09)]_68 chr14:24431762-24432262 5.16e-03 69_[-4(3.80e-05)]_22 chr21:31728703-31729203 3.77e-01 5_[-6(7.39e-05)]_83 chr5:113269565-113270065 7.62e-02 100 chr5:74206672-74207172 2.79e-02 40_[+3(3.51e-05)]_38 chr1:117760237-117760737 4.10e-01 9_[+9(8.28e-05)]_69 chr22:19941730-19942230 1.02e-01 100 chr17:48633104-48633604 4.65e-02 51_[+4(3.24e-05)]_40 chr17:78318254-78318754 5.46e-03 13_[+2(5.13e-08)]_56 chr19:911647-912147 6.97e-02 100 chr3:194313968-194314468 1.83e-01 58_[-6(1.58e-05)]_30 chr1:94927420-94927920 2.42e-02 25_[+4(8.47e-05)]_66 chr1:98661742-98662242 5.23e-01 31_[-1(6.35e-05)]_47 chr4:8010863-8011363 4.28e-01 100 chr10:97407591-97408091 6.03e-01 100 chr5:72955963-72956463 3.82e-02 37_[+1(1.91e-06)]_20_[+4(6.80e-05)]_\ 12 chr6:110814584-110815084 4.91e-02 43_[+1(1.68e-06)]_35 chr1:1349668-1350168 2.07e-01 27_[+1(6.93e-05)]_51 chr4:4859488-4859988 1.19e-03 12_[+1(2.27e-05)]_33_[+1(6.54e-07)]_\ 11 chr12:2878183-2878683 2.09e-01 100 chr14:88385694-88386194 6.83e-01 100 chr3:4492364-4492864 1.46e-02 59_[-2(1.17e-05)]_10 chr10:75601203-75601703 2.19e-06 51_[-10(5.08e-10)]_8_[+4(4.27e-05)]_\ 1 chr1:184036836-184037336 1.09e-02 23_[-1(8.78e-08)]_55 chr5:180816534-180817034 6.13e-03 78_[-6(6.52e-06)]_10 chr14:93207844-93208344 9.69e-05 12_[+2(1.49e-07)]_57 chr13:31328987-31329487 5.42e-03 34_[-3(1.88e-05)]_44 chr3:195259732-195260232 2.69e-01 16_[-1(2.27e-05)]_62 chr21:43771751-43772251 8.96e-01 100 chrX:118588788-118589288 2.66e-02 6_[-3(1.70e-06)]_72 chr12:12786838-12787338 3.28e-01 100 chr17:38730829-38731329 2.16e-02 54_[-4(4.27e-05)]_37 chr11:112086821-11208732 2.34e-01 31_[+6(3.59e-05)]_57 chr17:48499968-48500468 9.35e-03 100 chr2:61538905-61539405 2.16e-01 55_[+9(4.39e-05)]_23 chr16:14185865-14186365 1.30e-01 19_[-6(4.27e-05)]_69 chr10:63700475-63700975 3.16e-01 100 chr6:124488083-124488583 1.09e-03 1_[-8(5.10e-05)]_8_[+3(4.26e-07)]_\ 47 chr13:51542096-51542596 5.12e-01 100 chr17:80415306-80415806 2.41e-01 100 chr3:65927626-65928126 4.06e-02 64_[-8(2.59e-05)]_14 chr21:42830947-42831447 5.73e-02 34_[-6(1.11e-05)]_54 chr6:16684045-16684545 3.85e-01 100 chr6:85111690-85112190 4.43e-01 100 chr9:130713600-130714100 3.38e-02 52_[+2(1.93e-06)]_17 chr10:133308894-13330939 5.79e-06 [+2(6.09e-05)]_28_[+1(4.91e-07)]_19 chr19:12955276-12955776 8.79e-04 54_[+10(2.18e-10)]_15 chr1:226309447-226309947 1.90e-01 78_[-1(4.43e-05)] chr13:96091473-96091973 6.24e-02 35_[-4(3.24e-05)]_56 chr3:111692879-111693379 1.94e-02 29_[+8(7.63e-07)]_7_[+8(6.22e-06)]_\ 20 chr12:6555958-6556458 3.87e-01 100 chr12:28190769-28191269 1.63e-01 100 chr1:1574839-1575339 2.71e-01 100 chr5:154857290-154857790 1.83e-01 100 chr14:69153212-69153712 2.74e-02 14_[-1(2.05e-05)]_64 chr19:40425491-40425991 1.73e-01 69_[+1(2.05e-05)]_9 chr19:18372909-18373409 4.86e-10 17_[+7(1.63e-12)]_7_[+3(2.83e-07)]_\ 32 chr13:37868693-37869193 1.91e-01 100 chr16:89828891-89829391 7.81e-01 100 chr14:22979184-22979684 4.96e-01 100 chr17:1829851-1830351 2.50e-01 [+1(1.85e-05)]_55_[+1(2.27e-05)]_1 chr18:48107203-48107703 1.03e-07 2_[+2(4.04e-11)]_67 chr1:20731872-20732372 7.75e-03 12_[+4(3.24e-05)]_1_[-1(2.32e-07)]_\ 56 chr1:89821136-89821636 6.11e-01 6_[+1(5.31e-05)]_24_[+1(5.66e-06)]_\ 26 chr5:67530615-67531115 1.51e-03 10_[-3(9.64e-06)]_39_[+8(9.58e-07)]_\ 7 chr19:33902547-33903047 1.11e-02 5_[-3(6.32e-07)]_25_[+3(2.95e-05)]_\ 26 chr6:27791912-27792412 3.90e-01 100 chrX:68831622-68832122 4.44e-02 8_[-2(3.44e-05)]_61 chr9:86492042-86492542 3.08e-03 60_[-3(4.20e-06)]_18 chr11:79440782-79441282 2.29e-02 41_[-5(5.41e-05)]_[+1(5.05e-06)]_8 chr3:12193443-12193943 2.03e-01 100 chr17:77531233-77531733 2.40e-01 100 chr6:8085173-8085673 6.89e-08 45_[-5(6.54e-15)]_26 chr13:95300343-95300843 4.72e-01 100 chr3:55622054-55622554 4.98e-01 100 chr18:22172684-22173184 4.30e-01 100 chr1:153123039-153123539 9.46e-02 26_[-6(2.92e-05)]_62 chr20:51966466-51966966 5.72e-02 4_[-6(6.52e-06)]_84 chr1:222711850-222712350 6.78e-01 100 chr1:168137382-168137882 1.98e-04 38_[-2(2.01e-07)]_31 chr19:15409423-15409923 5.18e-01 100 chr11:12692753-12693253 4.66e-01 100 chr5:113217674-113218174 1.42e-02 13_[-2(3.65e-06)]_56 chr4:30884372-30884872 2.12e-01 57_[+8(8.69e-05)]_21 chr3:24640416-24640916 1.94e-09 7_[-9(2.81e-11)]_19_[-3(3.38e-06)]_\ 3_[+6(3.22e-05)]_15 chr1:168178669-168179169 1.30e-02 17_[+2(7.56e-05)]_21_[+1(1.22e-05)]_\ 9 chr17:28662441-28662941 1.78e-02 7_[-4(5.22e-05)]_47_[+6(6.52e-06)]_\ 25 chr8:119416119-119416619 6.88e-05 19_[-6(4.53e-07)]_69 chr13:27620899-27621399 1.25e-02 6_[+1(1.29e-06)]_72 chr11:67376547-67377047 3.30e-01 100 chr3:160684162-160684662 1.54e-11 25_[-3(1.38e-07)]_5_[+8(5.28e-05)]_\ 4_[+9(5.93e-10)] chr8:38231582-38232082 3.15e-02 39_[-4(5.22e-05)]_26_[+1(3.34e-05)]_\ 4 chr10:110701718-11070221 1.56e-01 100 chr17:49227943-49228443 2.21e-04 67_[-2(7.54e-07)]_2 chr1:151637529-151638029 6.53e-02 100 chr6:32894412-32894912 1.50e-01 59_[+4(7.45e-05)]_32 chr14:60981113-60981613 7.15e-01 100 chr15:63380241-63380741 3.69e-03 70_[-3(3.82e-05)]_8 chr3:17605190-17605690 4.44e-02 17_[-3(1.29e-05)]_61 chr8:22137360-22137860 3.04e-01 100 chr12:111597264-11159776 9.60e-01 100 chr6:166009830-166010330 8.99e-02 25_[+6(6.87e-05)]_63 chr1:81554732-81555232 6.10e-01 100 chr10:22506611-22507111 2.82e-01 100 chr10:113048034-11304853 1.99e-04 11_[+3(8.16e-07)]_67 chr2:55111886-55112386 1.32e-01 100 chr3:160565705-160566205 5.31e-01 100 chr14:39316008-39316508 2.94e-05 23_[+6(5.01e-05)]_10_[+3(2.83e-07)]_\ 33 chr1:225890963-225891463 2.70e-01 100 chr3:71051010-71051510 5.97e-07 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15_[-8(5.28e-05)]_63 chr5:132410434-132410934 9.17e-03 41_[+4(7.45e-05)]_2_[-1(1.67e-05)]_\ 26 chr1:1352323-1352823 5.78e-01 100 chr1:25232777-25233277 9.23e-04 6_[-8(2.85e-07)]_72 chr1:89890299-89890799 3.99e-03 78_[-3(1.17e-05)] chr2:48314777-48315277 2.56e-01 1_[+1(6.35e-05)]_77 chr3:194314307-194314807 8.65e-05 55_[+6(1.24e-06)]_33 chr8:102657463-102657963 6.99e-05 62_[+2(5.24e-07)]_7 chr2:176092648-176093148 5.10e-02 10_[+1(6.54e-07)]_12_[+1(4.25e-07)]_\ 11_[+1(1.10e-05)]_1 chr4:48779961-48780461 1.35e-01 52_[+4(3.80e-05)]_39 chr17:39667071-39667571 2.16e-01 100 chr1:241130543-241131043 4.22e-03 48_[-3(4.67e-08)]_30 chr6:7725936-7726436 1.60e-04 25_[-1(1.13e-08)]_14_[+4(4.02e-06)]_\ 30 chr5:60946012-60946512 1.32e-02 62_[-2(4.10e-05)]_7 chr15:96339494-96339994 1.06e-04 20_[-2(3.27e-08)]_49 chr3:112090748-112091248 4.80e-01 100 chr19:488714-489214 1.31e-01 16_[+1(9.88e-06)]_[-1(4.03e-05)]_40 chr11:113907331-11390783 2.73e-01 100 chr22:19855965-19856465 1.80e-01 100 chr22:38454775-38455275 1.55e-01 69_[+1(7.94e-06)]_9 chr8:29316569-29317069 1.31e-02 1_[-3(9.64e-06)]_77 chr10:88182086-88182586 2.82e-02 47_[-10(8.04e-05)]_22 chr12:49018677-49019177 1.71e-02 35_[-1(5.31e-05)]_11_[-7(2.26e-05)]_\ 10 chr19:18002071-18002571 2.49e-01 100 chr5:93585313-93585813 4.09e-01 100 chr12:108803489-10880398 7.68e-02 100 chr20:35615982-35616482 5.84e-01 36_[-4(1.75e-05)]_55 chr19:9309888-9310388 6.79e-01 28_[+2(7.97e-05)]_41 chr6:83067892-83068392 2.03e-01 100 chr13:99677762-99678262 1.57e-01 100 chr19:33041143-33041643 1.68e-01 67_[+3(4.52e-05)]_11 chr11:2902280-2902780 1.50e-01 34_[+1(5.31e-05)]_44 chr16:21502999-21503499 4.55e-08 6_[-4(8.73e-06)]_5_[-4(4.02e-06)]_\ 16_[-4(8.73e-06)]_4_[+2(1.33e-12)]_11 chr2:75340743-75341243 2.33e-02 100 chr12:6535196-6535696 8.46e-02 58_[-3(9.21e-05)]_20 chr11:114036178-11403667 4.02e-02 6_[+1(4.85e-05)]_72 chr17:57530692-57531192 1.53e-06 11_[+6(4.29e-06)]_35_[+2(3.97e-07)]_\ 11 chr6:85660172-85660672 5.41e-01 100 chr17:15944862-15945362 1.34e-01 75_[+1(7.10e-06)]_3 chr7:35003927-35004427 2.92e-02 100 chr10:29318392-29318892 8.04e-03 8_[+2(4.59e-08)]_61 chr6:100594447-100594947 3.57e-03 36_[+3(5.21e-06)]_42 chr17:78873651-78874151 1.15e-02 100 chr8:37375038-37375538 4.81e-01 100 chr17:17921704-17922204 2.18e-01 100 chr18:26549803-26550303 3.25e-01 100 chr9:20610551-20611051 6.61e-02 100 chr17:1413396-1413896 1.03e-06 30_[-3(5.32e-05)]_18_[-7(3.73e-12)]_\ 8 chr12:4809380-4809880 1.46e-02 12_[+1(1.67e-05)]_66 chr10:129708067-12970856 3.08e-01 100 chr11:92376141-92376641 6.03e-04 36_[+2(2.39e-05)]_6_[+6(6.87e-05)]_\ 15 chr1:46489640-46490140 3.88e-03 3_[+1(5.21e-08)]_13_[+1(1.67e-05)]_\ 40 chr17:44222394-44222894 2.24e-01 100 chr6:90895740-90896240 1.97e-01 100 chr4:139557106-139557606 2.18e-01 22_[-1(4.43e-05)]_56 chr12:92929565-92930065 4.96e-01 100 chr15:63521749-63522249 8.22e-08 27_[-7(4.53e-12)]_11_[-2(7.97e-05)]_\ 9 chr10:102502329-10250282 9.86e-01 100 chr4:144356396-144356896 1.34e-02 18_[+3(6.42e-06)]_60 chr9:97803304-97803804 6.88e-03 3_[+1(3.14e-06)]_23_[-1(2.05e-08)]_\ 30 chr2:199455718-199456218 1.35e-01 9_[+7(8.07e-05)]_22_[-1(4.49e-06)]_\ 25 chr16:2980440-2980940 1.38e-01 48_[+4(5.22e-05)]_43 chr1:31762782-31763282 4.19e-01 100 chr1:226403675-226404175 2.36e-02 100 chr9:113464900-113465400 4.70e-01 100 chr3:79012963-79013463 4.12e-01 100 chr5:82386840-82387340 3.33e-04 62_[+8(4.96e-06)]_16 chr6:2998570-2999070 1.40e-02 7_[-3(9.64e-06)]_22_[+4(4.02e-06)]_\ 40 chr13:93786961-93787461 9.08e-04 56_[+3(1.91e-06)]_22 chr10:69318549-69319049 7.60e-06 12_[+1(6.35e-05)]_33_[+1(2.71e-07)]_\ 11 chr7:36389674-36390174 8.70e-02 100 chr5:80408293-80408793 9.37e-03 1_[-1(1.68e-06)]_77 chr10:99443749-99444249 1.52e-06 17_[+6(4.29e-06)]_[-10(6.01e-05)]_9_\ [+3(1.05e-06)]_9 chr19:2841514-2842014 2.08e-02 5_[-1(7.52e-07)]_25_[-1(1.51e-05)]_\ 26 chr10:5977917-5978417 8.15e-02 13_[-1(3.66e-07)]_65 chr10:7410924-7411424 6.66e-03 100 chr3:150370209-150370709 4.98e-01 100 chr16:2463745-2464245 2.61e-01 100 chr2:60881323-60881823 7.04e-04 13_[+4(7.45e-05)]_36_[-1(1.69e-07)]_\ 20 chr6:3068531-3069031 3.36e-02 66_[-1(8.87e-06)]_12 chr17:4739590-4740090 1.58e-01 16_[+1(3.67e-05)]_62 chr1:155978817-155979317 2.67e-03 24_[+2(5.75e-07)]_45 chr5:72816489-72816989 3.62e-01 100 chr2:203328159-203328659 1.43e-01 51_[-1(8.63e-07)]_27 chr16:30985094-30985594 4.54e-05 37_[-2(2.22e-07)]_4_[+4(8.73e-06)]_\ 19 chr2:97113095-97113595 1.87e-01 42_[+1(6.93e-05)]_20_[+6(1.58e-05)]_\ 4 chr19:49878320-49878820 2.39e-03 57_[-2(5.24e-07)]_12 chr10:95506495-95506995 3.87e-03 37_[+6(6.87e-05)]_18_[+9(8.56e-05)]_\ 11 chr10:94402607-94403107 1.86e-01 31_[+1(1.68e-06)]_47 chr10:14089161-14089661 8.38e-02 66_[+6(2.12e-05)]_22 chr15:82263310-82263810 3.42e-05 8_[-6(5.44e-05)]_25_[+8(6.03e-07)]_\ 33 chr4:2417657-2418157 2.92e-04 22_[+2(1.65e-07)]_3_[+1(1.85e-05)]_\ 22 chr17:49227744-49228244 3.50e-02 9_[+2(4.35e-05)]_41_[-6(2.12e-05)]_\ 7 chr18:48902153-48902653 8.79e-01 100 chr1:100895844-100896344 1.81e-01 1_[+4(3.80e-05)]_90 chr3:53347626-53348126 2.93e-01 100 chr5:159098259-159098759 4.93e-06 [+2(6.81e-09)]_12_[+2(7.97e-05)]_26 chr16:28822591-28823091 9.07e-02 59_[-2(1.52e-05)]_10 chr20:63846445-63846945 3.51e-03 70_[+1(1.85e-05)]_8 chr22:50342606-50343106 1.26e-01 32_[+1(1.85e-05)]_46 chr18:75206720-75207220 5.79e-04 2_[-4(8.47e-05)]_50_[+6(1.46e-07)]_\ 27 chr11:62591398-62591898 9.39e-01 100 chr16:85172370-85172870 7.98e-02 20_[+6(8.00e-05)]_68 chr17:41527321-41527821 6.96e-01 100 chr13:20482349-20482849 3.56e-01 100 chr19:6209479-6209979 3.56e-04 61_[-2(3.67e-08)]_8 chr18:54223614-54224114 4.47e-01 100 chr1:84078514-84079014 4.07e-01 100 chr4:48780206-48780706 1.01e-01 3_[-2(4.26e-06)]_66 chr1:28417004-28417504 5.76e-01 100 chr15:90857674-90858174 2.77e-01 100 chr7:116220311-116220811 2.84e-06 34_[+3(4.68e-06)]_3_[+8(2.62e-08)]_\ 19 chr21:37253898-37254398 1.61e-01 61_[+3(3.82e-05)]_17 chr10:121573027-12157352 2.24e-02 84_[-6(8.57e-05)]_4 chrX:154383990-154384490 2.33e-01 100 chr19:48836347-48836847 2.17e-04 26_[-2(2.31e-08)]_25_[-6(1.74e-05)]_\ 6 chr17:1180189-1180689 4.08e-05 47_[-2(4.36e-07)]_22 chr1:231338705-231339205 1.38e-01 100 chr6:90369183-90369683 3.98e-01 100 chr17:82458700-82459200 1.10e-01 44_[-1(4.43e-05)]_8_[+1(1.67e-05)]_\ 4 chr2:175181554-175182054 6.12e-02 100 chr14:49586811-49587311 9.74e-08 19_[-8(5.25e-09)]_31_[-3(1.22e-10)]_\ 6 chr6:1616912-1617412 9.11e-04 39_[-3(1.70e-06)]_7_[-4(1.75e-05)]_\ 23 chr10:93993125-93993625 5.74e-01 100 chr1:164587922-164588422 4.02e-01 100 chr4:38318842-38319342 6.27e-03 28_[+2(4.88e-05)]_41 chr21:36134340-36134840 2.90e-02 100 chr12:45726733-45727233 4.71e-01 32_[-1(5.81e-05)]_46 chr22:42553696-42554196 1.19e-01 55_[+5(4.31e-05)]_16 chr17:74987533-74988033 7.38e-02 38_[-1(3.67e-05)]_40 chr9:125888881-125889381 5.94e-01 100 chr18:24063933-24064433 4.00e-01 100 chr12:85833668-85834168 2.79e-04 37_[+3(6.42e-06)]_8_[+8(2.00e-07)]_\ 11 chr10:71999188-71999688 1.04e-03 65_[-6(2.61e-07)]_23 chr13:77329256-77329756 5.16e-02 66_[+1(3.34e-05)]_12 chr5:163460704-163461204 4.96e-01 100 chr3:196279390-196279890 5.77e-03 70_[-4(3.80e-05)]_21 chr13:95300099-95300599 1.36e-03 57_[+2(2.10e-06)]_12 chr12:31368924-31369424 2.53e-08 6_[+8(4.08e-08)]_1_[+3(2.26e-05)]_\ 29_[-6(7.49e-06)]_8 chr15:67915752-67916252 3.89e-02 44_[+6(3.65e-06)]_44 chr10:15817769-15818269 1.19e-04 13_[-4(1.75e-05)]_25_[+2(7.13e-08)]_\ 22 chr22:29040549-29041049 1.91e-01 35_[-3(5.77e-05)]_43 chr2:176135084-176135584 7.56e-03 74_[-7(9.50e-06)]_4 chr10:27240482-27240982 3.34e-01 42_[-1(6.93e-05)]_36 chr14:77581113-77581613 4.54e-03 16_[+3(2.95e-05)]_62 chr14:28754431-28754931 2.46e-01 100 chr12:19234271-19234771 6.37e-02 100 chr19:3045510-3046010 7.99e-08 47_[-5(7.43e-05)]_1_[+7(2.11e-12)]_\ 1 chr21:31219194-31219694 3.62e-01 100 chr1:226110408-226110908 4.90e-01 100 chrX:129987012-129987512 2.58e-03 7_[+2(1.64e-06)]_62 chr14:23286398-23286898 9.50e-01 100 chr10:8053428-8053928 3.90e-01 73_[+1(5.05e-06)]_5 chr8:22095339-22095839 3.01e-01 100 chr4:169267241-169267741 3.15e-02 9_[+3(1.70e-06)]_47_[+3(2.95e-05)] chr6:31578538-31579038 2.08e-01 48_[+6(5.06e-06)]_40 chr22:23894955-23895455 2.38e-01 68_[-9(3.58e-05)]_10 chr1:32775441-32775941 4.30e-04 39_[-3(4.68e-06)]_39 chr7:2632577-2633077 1.04e-02 43_[-1(8.87e-06)]_35 chr5:115815483-115815983 5.53e-01 100 chr13:35476786-35477286 1.60e-02 7_[-10(8.54e-05)]_33_[+3(4.68e-06)]_\ 7 chr4:168641903-168642403 5.37e-01 100 chr6:125231199-125231699 1.49e-02 100 chr2:61017187-61017687 3.37e-01 100 chr6:26321902-26322402 1.31e-01 100 chr20:2470832-2471332 9.60e-07 1_[-2(4.11e-08)]_5_[-2(6.09e-05)]_\ 32 chr5:98774603-98775103 8.79e-01 100 chr1:39507127-39507627 1.77e-01 100 chr5:68215701-68216201 7.62e-03 27_[-4(4.02e-06)]_15_[+1(5.31e-05)]_\ 5_[+1(6.35e-06)] chr12:52945963-52946463 1.87e-03 59_[-3(8.53e-05)]_19 chr1:152036498-152036998 9.60e-06 48_[-2(9.93e-09)]_21 chr6:124097807-124098307 5.06e-05 4_[-3(5.79e-06)]_6_[+6(4.53e-07)]_\ 46_[-4(3.24e-05)]_1 chr3:195205003-195205503 2.74e-02 1_[+3(7.89e-06)]_77 chr6:16136391-16136891 6.61e-04 33_[-3(6.32e-07)]_45 chr2:158967710-158968210 1.68e-01 33_[+1(4.85e-05)]_45 chr10:120981809-12098230 2.70e-03 34_[+2(1.39e-06)]_35 chr1:92080504-92081004 2.92e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************