# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/HIC1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/HIC1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/HIC1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/HIC1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Tue May 01 08:01:10 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/HIC1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Tue May 01 08:01:10 PDT 2018)
#        host: indra
#        when: Tue May 01 08:49:02 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.184 C 0.317 G 0.312 T 0.187


MOTIF GBTGGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GBTGGCA    TGCCAVC        150         47   2.5e-016   7.6e-012
#          GCTGGCA    TGCCAGC         71         21   2.6e-008   8.1e-004
#          GGTGGCA    TGCCACC         58         17   5.2e-007   1.6e-002
#          GTTGGCA    TGCCAAC         29         10   1.4e-003   4.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 175 E= 7.6e-012
0.000000 0.000000 1.000000 0.000000
0.000000 0.462857 0.365714 0.171429
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TGACTCA    TGAGTCA         68          7   1.1e-014   3.5e-010
#          TGACTCA    TGAGTCA         68          7   1.1e-014   3.5e-010

letter-probability matrix: alength= 4 w= 7 nsites= 88 E= 3.5e-010
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF HGGGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      HGGGCA     TGCCCD        283        169   7.0e-012   2.1e-007
#           CGGGCA     TGCCCG        122         58   1.4e-007   4.2e-003
#           AGGGCA     TGCCCT        111         52   4.1e-007   1.2e-002
#           TGGGCA     TGCCCA        134         71   8.5e-007   2.6e-002

letter-probability matrix: alength= 4 w= 6 nsites= 410 E= 2.1e-007
0.297561 0.336585 0.000000 0.365854
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CMGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CMGGAA     TTCCKG         88         34   1.4e-007   4.1e-003
#           CAGGAA     TTCCTG         47         14   8.5e-006   2.5e-001
#           CCGGAA     TTCCGG         43         21   3.3e-003   9.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 91 E= 4.1e-003
0.000000 1.000000 0.000000 0.000000
0.527473 0.472527 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAYGTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GAYGTCA    TGACRTC         34          5   8.5e-007   2.5e-002
#          GACGTCA    TGACGTC         13          0   1.1e-004   3.3e+000
#          GATGTCA    TGACATC         21          5   1.1e-003   3.3e+001

letter-probability matrix: alength= 4 w= 7 nsites= 39 E= 2.5e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.333333 0.000000 0.666667
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTCYTCC DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCYTCC   GGARGAGG         42          9   1.1e-006   3.1e-002
#         CCTCCTCC   GGAGGAGG         28          5   2.7e-005   7.7e-001
#         CCTCTTCC   GGAAGAGG         15          4   9.1e-003   2.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.1e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.673913 0.000000 0.326087
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 28.38 seconds