# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:49 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:49 PST 2017)
#        host: indra
#        when: Mon Dec 18 16:07:49 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.151 C 0.350 G 0.350 T 0.149


MOTIF CYTCCY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CYTCCY     RGGARG        406        292   1.6e-011   4.3e-007
#           CCTCCC     GGGAGG        278        183   1.1e-008   2.9e-004
#           CTTCCC     GGGAAG        115         64   2.3e-005   6.1e-001
#           CCTCCT     AGGAGG        127         81   2.9e-004   7.6e+000
#           CTTCCT     AGGAAG         71         41   1.9e-003   5.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 675 E= 4.3e-007
0.000000 1.000000 0.000000 0.000000
0.000000 0.730370 0.000000 0.269630
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.706667 0.000000 0.293333


MOTIF GACCCCW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GACCCCW    WGGGGTC         68         19   2.1e-008   5.4e-004
#          GACCCCT    AGGGGTC         39          8   1.8e-006   4.7e-002
#          GACCCCA    TGGGGTC         29         11   2.8e-003   7.1e+001

letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 5.4e-004
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.414286 0.000000 0.000000 0.585714


# Stopping reason: E-value threshold exceeded
#    Running time: 17.10 seconds