Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
SCCTCCC 7 CCCTCCC
YGBGKGKGKGTGTGWGTGKGBS 22 CGCGTGGGGGTGTGAGTGTGGG
YYYCCDCCYYCTCYCC 16 CTCCCTCCTCCTCCCC
RGCCAATCAGMR 12 AGCCAATCAGCG
CAYKCTGGGARWTGTAGTCC 20 CATTCTGGGAGTTGTAGTCC
YGCGCTTCCCCGAGCGTGCAGCTTCCGGTG 30 CGCGCTTCCCCGAGCGTGCAGCTTCCGGTG
TTSARAMAAAAAAAA 15 TTCAAAAAAAAAAAA
GCSGGGGSCTCDGCTGGGGGS 21 GCGGGGGCCTCGGCTGGGGGC
AAAGTTAAA 9 AAAGTTAAA
MCTTCSCTTTAAAGAR 16 CCTTCCCTTTAAAGAG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.163 C 0.337 G 0.337 T 0.163

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 + 23286267 23286287 2.01e-10 0.000113 GCGTGGGCCTCAGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr5 + 112420172 112420192 1.47e-08 0.00414 GGCGGGGTATCAGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 38900023 38900043 3.88e-08 0.0073 GCGGGGGCCATGGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 26035363 26035383 6.78e-08 0.00957 GCTGCGACCTCTGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr21 - 33491518 33491538 9.74e-08 0.011 GCGGAGGCACCAGCTGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 23558522 23558542 1.24e-07 0.0117 GCGGAGTTATCAGCTGGAGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 + 97292378 97292398 2.33e-07 0.0183 GCGGGGGGTTTGGCTGGAGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr5 - 32174628 32174648 2.7e-07 0.0183 GTGGAGGGCACGGCTGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 7573786 7573806 2.92e-07 0.0183 gggggggcttcggctggaggg
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr11 + 73983433 73983453 3.58e-07 0.0202 CCGTTGGGCTCGGCTGGGGTT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr15 - 75625750 75625770 4.16e-07 0.0213 GGTGAGGCAGCAGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 79839835 79839855 5.11e-07 0.0236 CCCGGGACCCCTGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 48513696 48513716 5.63e-07 0.0236 CCCTGGGCCCCTGCTGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 - 85679187 85679207 5.85e-07 0.0236 CCGGCGGCCTCCGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 40570850 40570870 6.54e-07 0.0246 GGTGGGGCCAGAGCTGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 47515300 47515320 7.65e-07 0.027 GGCGGGGCCTCGGCGGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 + 12716906 12716926 8.37e-07 0.0278 GGGGAGGGCCGAGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 + 31730078 31730098 9.66e-07 0.0303 GCTGTGATCTCGGCTGGGGCC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 52056535 52056555 1.03e-06 0.0307 ACCGGCGGCGCAGCTGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 54406938 54406958 1.18e-06 0.0333 GCTGGGGGCCGGGCTGGAGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 26693379 26693399 1.37e-06 0.0369 AGCGAGACCCCGGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 42017200 42017220 1.48e-06 0.0379 GCCTTGATCTCAGATGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 38362066 38362086 1.93e-06 0.0473 GTTTGGGGATGGGCTGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 67832999 67833019 2.19e-06 0.0494 GCTGGGGCTAGGGCTGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr7 + 155205581 155205601 2.19e-06 0.0494 gtggagacactggctggaggc
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 27490109 27490129 2.28e-06 0.0494 AGGGCGAGCGCGGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 37489540 37489560 2.82e-06 0.0575 CGGGGGCGCTCTGCTGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr15 + 84981323 84981343 2.88e-06 0.0575 CTGGAGGTCACCGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 + 122789594 122789614 3.03e-06 0.0575 GCGTTGACCACGGCTGGTGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr5 + 76403101 76403121 3.06e-06 0.0575 GCGGGGGCCCCAGCTGCAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 28571663 28571683 3.22e-06 0.0576 GCTGGGAGCTTCGCTGGGGAT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr16 - 71895290 71895310 3.26e-06 0.0576 ACTGAGTCAGCTGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 + 121800277 121800297 3.77e-06 0.0626 CTGGAGAGCTGGGCTGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 - 89638617 89638637 3.83e-06 0.0626 ACCTGGGTCTGAGCTGGATTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 - 79935150 79935170 3.94e-06 0.0626 ACGGGTGGCCGTGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr9 - 113401383 113401403 3.99e-06 0.0626 GGCGGGGCCGCGGCTGGAGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 - 123232967 123232987 5.23e-06 0.0793 GTGTGGTGATGGGCTGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 - 104064461 104064481 5.37e-06 0.0793 GCCTCCAGCTGTGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 + 103334034 103334054 5.48e-06 0.0793 AGCGAGACCGGGGCTGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 - 96399569 96399589 5.75e-06 0.0793 GGCGGGGGTGGAGCTGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 35119654 35119674 5.86e-06 0.0793 ACGTGGGCATTCGCGGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 224434959 224434979 5.9e-06 0.0793 GTCGGGGTCGTGGATGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 - 102593533 102593553 6.86e-06 0.09 GGCGCCGGCCCTGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr21 - 39312549 39312569 7.08e-06 0.0908 GCGGCCGCCTCTGCGGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr13 + 50124439 50124459 8.41e-06 0.105 GGCTGGGGAGCAGCTGGGGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 48612036 48612056 8.62e-06 0.106 ACCTGCGGCTGGGCTGGTGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 41859886 41859906 1.01e-05 0.121 GGGTGGGCCACAGCTGGCGCC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 + 103930414 103930434 1.09e-05 0.128 GCGGACCGCGCGGCTGGAGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 + 119725510 119725530 1.15e-05 0.133 GCTGTGGGCCTGGCTGGGGAT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 + 57726332 57726352 1.18e-05 0.133 GGGGCGTGTTGAGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 + 119725818 119725838 1.24e-05 0.136 GCCTGGGCAAGAGCGGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr8 + 11200724 11200744 1.25e-05 0.136 GGGGGGGCCCCGGCTGGTGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 151790444 151790464 1.31e-05 0.139 CTGGTGGCTGCAGCTGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 36949410 36949430 1.33e-05 0.139 ACTTGGTGCTCGGCTGGATGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 33771760 33771780 1.37e-05 0.14 ACTTACACCTCAGCGGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 30226613 30226633 1.54e-05 0.155 GCTGGGGCAGGTGCTGCGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 - 68406693 68406713 1.56e-05 0.155 CTGGGCAGCCTTGCTGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr4 + 782028 782048 1.66e-05 0.162 GGGGGCGGTTCTGCTGGAGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 46132693 46132713 1.72e-05 0.162 GGTGGCGCCTCAGCGGGTGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr4 - 1580514 1580534 1.75e-05 0.162 GGCGGGGTCCGGGCGGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr20 + 3888840 3888860 1.77e-05 0.162 GCTGGGGGAGGGGCTGGCGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 - 32958327 32958347 1.78e-05 0.162 GGCGGGGCCGCGGCTGGTTTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr5 - 112419951 112419971 1.82e-05 0.162 GCCGCGTTCCCAGCTGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 81683498 81683518 1.84e-05 0.162 GCGGGTGGAGTTGCGGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 + 23286235 23286255 1.91e-05 0.164 GCGTGGGTCTCGGCTGAAGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 50795067 50795087 1.92e-05 0.164 AGCTGTAGCTGTGCTGGTGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 19378550 19378570 1.98e-05 0.164 GCGGGGGTCTCCGAGGGTGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr20 - 31573121 31573141 1.98e-05 0.164 GGTGTGGCCGCGGCGGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 205813065 205813085 2.09e-05 0.171 GCTTCGGGCCCGGCGGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 3845791 3845811 2.13e-05 0.172 GCGGAGAGCTGGGAGGGAGTT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr7 + 100539029 100539049 2.18e-05 0.173 ACGGTTCTCGCTGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 996327 996347 2.22e-05 0.174 GCTGGGAGCTGGGCGGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 10210374 10210394 2.3e-05 0.175 AGTGGGGCTGCTGCGGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 37906823 37906843 2.31e-05 0.175 ACCGCCCCCTCCGCTGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 226083848 226083868 2.33e-05 0.175 GCTGGGCCAGGCGCTGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr4 - 2962951 2962971 2.52e-05 0.187 GCTGTTCTCTGAGCTGGAGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 23558712 23558732 2.78e-05 0.203 CCCTCGGCCACTGCGGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr7 - 117873126 117873146 2.86e-05 0.204 GCGGCCACCCTGGCTGGGGAT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 42017241 42017261 2.87e-05 0.204 ATCGCCTCAACAGCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 74431328 74431348 2.89e-05 0.204 GTGGGGGGTGGGGCTGGTGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 205749790 205749810 3.05e-05 0.213 GTGGGGGGCCCTGCTGGCGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr9 - 132214229 132214249 3.19e-05 0.22 AGGGAGAGAGGAGCGGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 - 102714088 102714108 3.3e-05 0.223 GGGTGGGCCCTGGAGGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 - 89081682 89081702 3.32e-05 0.223 ATCGGGGCTGTTGCTGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr15 - 101723992 101724012 3.43e-05 0.228 GCGGGGGCAGGTGCGGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 10194864 10194884 3.57e-05 0.234 GTGGGCACCCGGGCTGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 31399233 31399253 3.69e-05 0.239 CCCTTTTTCACAGCTGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 11736233 11736253 3.83e-05 0.246 AGGTGGCGACGGGCTGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 32651257 32651277 3.92e-05 0.249 GGGTCGAGCGTTGCGGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr16 + 1408754 1408774 4.02e-05 0.252 GCGGGGGGCCCTCCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr2 + 73233741 73233761 4.11e-05 0.255 CCGTGGATAGGCGCTGGGGCC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr13 - 79481557 79481577 4.29e-05 0.26 CGGGACGCCGCGGCGGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 41285662 41285682 4.33e-05 0.26 CCGGGGATTCCAGATGGGGCT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 151790250 151790270 4.33e-05 0.26 ATGTGGGGCGCAGCGGGGGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr16 - 1408809 1408829 4.41e-05 0.262 CTCTTGGTTGTGGCTGGAGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 50474292 50474312 4.47e-05 0.263 CCGGCGGTCTTGGCGGGGTGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 42280382 42280402 4.6e-05 0.267 GGCGCGGCCCTCGCTGGGTGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr15 + 83207985 83208005 4.64e-05 0.267 CCCGGCTTCTCGGCTGGCGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 173868646 173868666 4.73e-05 0.268 GGGTGTGTCCCGGCTGCGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 - 70567070 70567090 4.75e-05 0.268 GCGGCTTCCTCCGCGGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr7 + 98252089 98252109 4.81e-05 0.269 GCCGCCGCTGCAGCTGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 - 67241807 67241827 4.97e-05 0.275 ACCTCGGGCTCGGCTGGCTGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 19648558 19648578 5.15e-05 0.279 GCGGGGTGTAGGGATGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 25905930 25905950 5.15e-05 0.279 CTGGCGACCGCAGCTGGTGAT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chrX - 41333357 41333377 5.27e-05 0.279 ATGGTGACCGGGGCGGGAGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr20 - 3173109 3173129 5.32e-05 0.279 CTGTGGCCTGTGGCTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr20 - 297642 297662 5.36e-05 0.279 GCCGCGGGCCGCGCGGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 + 101570369 101570389 5.39e-05 0.279 CGCGCGCCCTCTGCTGGCGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr16 + 29808058 29808078 5.41e-05 0.279 gcggcggcagcggctgcTGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 67430904 67430924 5.49e-05 0.279 AGCTGCTCAGTTGCTGGAGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 75897121 75897141 5.51e-05 0.279 GCCTAGGCCCCTGCGGCGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr3 + 173395879 173395899 5.53e-05 0.279 AGGGAGGCAGCGGAGGGAGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 - 48998300 48998320 5.71e-05 0.285 CGGGGTTTTCCAGCTGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 + 89081619 89081639 5.91e-05 0.289 GGGGAGGCATGCGCTGGCGCT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 - 101569948 101569968 5.94e-05 0.289 ACTGGGAGATCAGGTGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 - 105094081 105094101 5.94e-05 0.289 GGGGTTGGAGGAGATGGAGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr20 + 49936438 49936458 6.07e-05 0.293 GGGTGCTGCGCAGCTGGCGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr5 - 91280673 91280693 6.4e-05 0.304 GCTGACTCCGCGGCTGCGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 - 570192 570212 6.43e-05 0.304 GCCGTCCCCTCGGCTGCAGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 52056572 52056592 6.48e-05 0.304 GGGGGCGGTGGTGCTGGGGAC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr6 + 13574763 13574783 6.6e-05 0.304 GGGGTCGCTGCGGCTGGAGAC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr5 - 154755262 154755282 6.6e-05 0.304 GGGGACGGCGCAGCGGGGGCG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 153946122 153946142 6.8e-05 0.304 GGCGAGCTAATTGCGGGAGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 27726310 27726330 6.83e-05 0.304 GGCGGGGCACGTGCGGGAGCC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 - 92106593 92106613 6.86e-05 0.304 GCAGGGGGCGGAGCTGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 38272611 38272631 6.88e-05 0.304 GCGGGGGCAGCTCCTGGAGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr7 - 35186138 35186158 6.94e-05 0.304 GGCTAGTCAACGGCTGCGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 6199311 6199331 7.09e-05 0.304 CGCTAGCCCCTAGCTGgggcc
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr4 - 1580557 1580577 7.12e-05 0.304 GCGGGGCCTAGGGCGGGAGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 45456027 45456047 7.15e-05 0.304 CTCGGGGGTGTTGCGGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 27919199 27919219 7.31e-05 0.304 GGCGGCAGCTGTGAGGGGGTT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr7 + 100867031 100867051 7.31e-05 0.304 GTGGGTAGCTGAGAGGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 40191943 40191963 7.4e-05 0.304 CCCGGCGGCCGGGATGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 + 67241585 67241605 7.4e-05 0.304 CCTGGGAgcgcggcgggggag
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr2 + 231713983 231714003 7.4e-05 0.304 GTGGCTCCCCCTGCTGGTGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr12 + 104064533 104064553 7.43e-05 0.304 GTGGGCAGAGGGGCGGGGGTT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 6199316 6199336 7.46e-05 0.304 CCCGGGGCCCCAGCTAGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 28736490 28736510 7.46e-05 0.304 GGTTACCTCCCAGATGGGGGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 + 100998351 100998371 7.62e-05 0.304 GGAGGGGGCTCTGCTGGGGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chrX - 41084620 41084640 7.69e-05 0.304 GCCGGGCCACTGGCTGCGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr16 - 1408800 1408820 7.72e-05 0.304 GTGGCTGGAGGTGCTGGGGCT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 17996942 17996962 7.72e-05 0.304 ACGGAGGCCGCCGCGGGGTGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 27490090 27490110 7.79e-05 0.304 GCGTAGCGCGCTGAGGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 - 39412703 39412723 7.82e-05 0.304 CTCGGGCTCCCGGCTGGGTGT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 + 183636140 183636160 7.82e-05 0.304 GCCTTGGCTTTTGCTGCAGCC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 38272715 38272735 7.95e-05 0.305 GGTGCGGCCGCGGAGGGAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 + 43187532 43187552 7.95e-05 0.305 CCCTGCGCATCGGCGGGGTGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr18 + 36129810 36129830 8.08e-05 0.308 GTCTGGCCCTCGGCTGGCTGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr13 + 50124428 50124448 8.15e-05 0.309 GCGGTGCCAGGGGCTGGGGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 155172985 155173005 8.25e-05 0.31 CGGGAGTTCTTGGAGGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 44138492 44138512 8.71e-05 0.325 AGGTGGGGCTCCACTGGGGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr21 + 39313634 39313654 8.82e-05 0.326 ACCGACGCCTCCGCGGGGGAG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr11 + 64241670 64241690 8.86e-05 0.326 CCGGGCGTCCTCGCGGGGGTG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr18 - 50287458 50287478 8.93e-05 0.326 GTGGACTGAACGGCGGGAGTC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr14 - 105301262 105301282 8.97e-05 0.326 GCCTCGCTCGCCGCTGGAGAC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 155208895 155208915 9.11e-05 0.329 GCCTGGGCCAGGTCTGGGGGC
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr17 + 82236508 82236528 9.15e-05 0.329 GGCTGTTCCTGAGCTGCAGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr10 - 35127220 35127240 9.45e-05 0.337 GCGTCGCCCGCTGCTGGGTCT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr19 + 43504122 43504142 9.49e-05 0.337 GCTGGGACTCCTGCGGGGTGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr22 - 27919210 27919230 9.73e-05 0.343 GCGGTGGTATCGGCGGCAGCT
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 228486584 228486604 9.89e-05 0.346 CGCTGTCTCCTGGCTGGGGGG
GCSGGGGSCTCDGCTGGGGGS MEME-8 chr1 - 226083703 226083723 9.93e-05 0.346 CGGGAGGGAACGGCGGGGGAG
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_8 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GCSGGGGSCTCDGCTGGGGGS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_8
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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