# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:42 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLIS1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:42 PDT 2018) # host: indra # when: Thu May 10 16:56:02 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.199 C 0.302 G 0.302 T 0.197 MOTIF BRCCTCC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST BRCCTCC GGAGGYV 272 118 8.3e-022 2.4e-017 # CACCTCC GGAGGTG 60 18 4.5e-007 1.3e-002 # TGCCTCC GGAGGCA 72 27 1.4e-006 4.0e-002 # GGCCTCC GGAGGCC 86 39 5.6e-006 1.6e-001 # GACCTCC GGAGGTC 48 20 3.2e-004 9.4e+000 # TACCTCC GGAGGTA 25 6 3.8e-004 1.1e+001 # CGCCTCC GGAGGCG 40 16 7.2e-004 2.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 367 E= 2.4e-017 0.000000 0.313351 0.408719 0.277929 0.425068 0.000000 0.574932 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CWGCAGGR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CWGCAGGR YCCTGCWG 101 23 2.2e-014 6.4e-010 # CTGCAGGG CCCTGCAG 42 6 2.9e-008 8.3e-004 # CAGCAGGA TCCTGCTG 15 1 2.4e-004 6.9e+000 # CAGCAGGG CCCTGCTG 37 15 1.3e-003 3.7e+001 # CTGCAGGA TCCTGCAG 13 2 3.5e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 6.4e-010 0.000000 1.000000 0.000000 0.000000 0.490909 0.000000 0.000000 0.509091 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.263636 0.000000 0.736364 0.000000 MOTIF RTAAAY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST RTAAAY RTTTAY 94 20 4.8e-014 1.4e-009 # ATAAAC GTTTAT 36 6 9.7e-007 2.8e-002 # GTAAAC GTTTAC 25 4 4.3e-005 1.2e+000 # GTAAAT ATTTAC 24 5 2.4e-004 6.7e+000 # ATAAAT ATTTAT 24 6 6.3e-004 1.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 109 E= 1.4e-009 0.559633 0.000000 0.440367 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.568807 0.000000 0.431193 MOTIF TGACKCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TGACKCA TGMGTCA 60 9 3.6e-011 1.0e-006 # TGACTCA TGAGTCA 52 9 4.1e-009 1.1e-004 # TGACGCA TGCGTCA 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 63 E= 1.0e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.126984 0.873016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATTAH DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ATTAH DTAAT 123 57 5.7e-008 1.6e-003 # ATTAC GTAAT 46 17 1.2e-004 3.2e+000 # ATTAT ATAAT 45 23 4.2e-003 1.1e+002 # ATTAA TTAAT 49 27 6.2e-003 1.7e+002 letter-probability matrix: alength= 4 w= 5 nsites= 148 E= 1.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.358108 0.310811 0.000000 0.331081 MOTIF CCCCAGGR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCCCAGGR YCCTGGGG 84 31 1.1e-007 2.9e-003 # CCCCAGGG CCCTGGGG 60 21 4.3e-006 1.1e-001 # CCCCAGGA TCCTGGGG 27 10 3.4e-003 9.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 2.9e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.322917 0.000000 0.677083 0.000000 MOTIF CCCCCRCG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCCCCRCG CGYGGGGG 32 4 7.0e-007 1.9e-002 # CCCCCGCG CGCGGGGG 20 2 5.3e-005 1.4e+000 # CCCCCACG CGTGGGGG 12 2 6.2e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.9e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF SCGGGA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST SCGGGA TCCCGS 95 42 9.2e-007 2.4e-002 # CCGGGA TCCCGG 48 20 3.2e-004 8.5e+000 # GCGGGA TCCCGC 50 22 4.6e-004 1.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 107 E= 2.4e-002 0.000000 0.514019 0.485981 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 35.43 seconds