# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:40 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:41 PDT 2018)
#        host: indra
#        when: Thu May 10 16:59:48 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.190 C 0.302 G 0.305 T 0.203


MOTIF ATTCRAGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTCRAGG   CCTYGAAT         32          1   2.7e-009   8.0e-005
#         ATTCAAGG   CCTTGAAT         23          1   1.2e-006   3.7e-002
#         ATTCGAGG   CCTCGAAT          9          0   1.9e-003   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 8.0e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.718750 0.000000 0.281250 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GTTTCY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTTTCY     RGAAAC         78         28   2.0e-007   6.0e-003
#           GTTTCC     GGAAAC         47         16   3.8e-005   1.2e+000
#           GTTTCT     AGAAAC         34         12   6.7e-004   2.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 85 E= 6.0e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.552941 0.000000 0.447059


MOTIF SGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       SGGAA      TTCCS        259        180   1.4e-006   4.2e-002
#            CGGAA      TTCCG        128         81   2.2e-004   6.6e+000
#            GGGAA      TTCCC        174        122   3.1e-004   9.3e+000

letter-probability matrix: alength= 4 w= 5 nsites= 398 E= 4.2e-002
0.000000 0.432161 0.567839 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 16.06 seconds