# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:50 PST 2017) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:51 PST 2017) # host: indra # when: Mon Dec 18 16:08:01 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.308 C 0.195 G 0.195 T 0.302 MOTIF HMATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST HMATAAA TTTATKD 275 111 1.0e-024 3.1e-020 # TCATAAA TTTATGA 59 17 3.2e-007 9.6e-003 # AAATAAA TTTATTT 88 38 1.5e-006 4.6e-002 # ACATAAA TTTATGT 46 14 1.4e-005 4.0e-001 # CCATAAA TTTATGG 43 14 5.3e-005 1.6e+000 # TAATAAA TTTATTA 46 19 3.9e-004 1.2e+001 # CAATAAA TTTATTG 63 32 6.2e-004 1.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 446 E= 3.1e-020 0.508969 0.246637 0.000000 0.244395 0.654709 0.345291 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGATAAB DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AGATAAB VTTATCT 83 14 2.5e-014 7.3e-010 # AGATAAG CTTATCT 37 3 6.0e-009 1.8e-004 # AGATAAT ATTATCT 29 4 4.2e-006 1.2e-001 # AGATAAC GTTATCT 22 7 3.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 90 E= 7.3e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.255556 0.411111 0.333333 MOTIF RYAAACA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST RYAAACA TGTTTRY 141 55 8.4e-012 2.5e-007 # ACAAACA TGTTTGT 40 14 2.0e-004 5.8e+000 # GTAAACA TGTTTAC 40 14 2.0e-004 5.8e+000 # GCAAACA TGTTTGC 34 14 2.3e-003 6.8e+001 # ATAAACA TGTTTAT 33 14 3.4e-003 9.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 149 E= 2.5e-007 0.489933 0.000000 0.510067 0.000000 0.000000 0.496644 0.000000 0.503356 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTGCTGB DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCTGCTGB VCAGCAGG 38 3 3.1e-009 9.0e-005 # CCTGCTGT ACAGCAGG 21 3 1.2e-004 3.5e+000 # CCTGCTGG CCAGCAGG 12 0 2.3e-004 6.7e+000 # CCTGCTGC GCAGCAGG 7 0 7.7e-003 2.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 9.0e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.170732 0.317073 0.512195 MOTIF RGGATTA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST RGGATTA TAATCCY 48 9 3.9e-008 1.1e-003 # GGGATTA TAATCCC 26 4 2.4e-005 7.0e-001 # AGGATTA TAATCCT 22 5 6.7e-004 1.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 1.1e-003 0.469388 0.000000 0.530612 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTRTAAA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTRTAAA TTTAYAG 67 20 8.0e-008 2.3e-003 # CTATAAA TTTATAG 42 13 3.9e-005 1.1e+000 # CTGTAAA TTTACAG 29 7 1.3e-004 3.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 71 E= 2.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.591549 0.000000 0.408451 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AACCACW DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AACCACW WGTGGTT 54 14 2.8e-007 7.9e-003 # AACCACA TGTGGTT 39 10 1.3e-005 3.8e-001 # AACCACT AGTGGTT 16 4 5.6e-003 1.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 57 E= 7.9e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.719298 0.000000 0.000000 0.280702 MOTIF TCGTWAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TCGTWAA TTWACGA 20 0 8.1e-007 2.3e-002 # TCGTAAA TTTACGA 11 0 4.7e-004 1.3e+001 # TCGTTAA TTAACGA 9 0 1.9e-003 5.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 23 E= 2.3e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.608696 0.000000 0.000000 0.391304 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 42.00 seconds