# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1.5e-020 2.0e-023 -52.27 0.0 16 452 20 24 0.03540 8.8e-026 225 1 TGTTTAYTTTKB MEME-2 TGTTTAYTTTKB 2.0e-018 2.7e-021 -47.37 0.0 145 489 259 509 0.29652 1.1e-023 244 1 CCTGCTGTG MEME-3 CCTGCTGTG 3.5e-001 4.6e-004 -7.67 0.0 236 492 164 263 0.47967 1.9e-006 245 2 HMATAAA DREME-1 AMATAAA 5.3e-013 7.1e-016 -34.89 0.0 172 494 278 521 0.34818 2.9e-018 246 2 AGATAAB DREME-2 AGATAAB 4.0e-003 5.3e-006 -12.14 0.0 114 494 90 226 0.23077 2.2e-008 246 2 RYAAACA DREME-3 RYAAACA 5.2e-020 6.9e-023 -51.02 0.0 128 494 187 362 0.25911 2.8e-025 246 2 CCTGCTGB DREME-4 CCTGCTGK 9.6e-002 1.3e-004 -8.96 0.0 93 493 63 185 0.18864 5.2e-007 246 2 RGGATTA DREME-5 RGGATTA 2.4e-002 3.3e-005 -10.33 0.0 86 494 45 118 0.17409 1.3e-007 246 2 CTRTAAA DREME-6 CTRTAAA 8.9e-005 1.2e-007 -15.94 0.0 190 494 124 208 0.38462 4.8e-010 246 2 AACCACW DREME-7 AACCACA 1.2e-001 1.6e-004 -8.76 0.0 260 494 120 169 0.52632 6.4e-007 246 2 TCGTWAA DREME-8 TCGTWAA 1.7e-002 2.3e-005 -10.69 0.0 68 494 20 40 0.13765 9.2e-008 246 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 4.2e-002 5.7e-005 -9.78 0.0 172 490 257 565 0.35102 2.3e-007 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 3.6e-001 4.9e-004 -7.63 0.0 88 492 146 567 0.17886 2.0e-006 245 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 5.1e-002 6.9e-005 -9.58 0.0 239 491 341 577 0.48676 2.8e-007 245 3 M0415_1.02 (KLF9)_(Mus_musculus)_(DBD_1.00) NTAACGGN 3.1e0000 4.2e-003 -5.48 0.0 349 493 397 502 0.70791 1.7e-005 246 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 1.5e0000 2.0e-003 -6.19 0.0 55 491 101 588 0.11202 8.4e-006 245 3 M0633_1.02 DMRT2 KAATKTATWN 1.2e0000 1.6e-003 -6.46 0.0 131 491 201 572 0.26680 6.4e-006 245 3 M0718_1.02 FOXK1 DNRTMAACAH 2.7e-016 3.7e-019 -42.45 0.0 129 491 264 595 0.26273 1.5e-021 245 3 M0719_1.02 FOXG1 RTAAACAW 2.5e-017 3.4e-020 -44.82 0.0 133 493 265 577 0.26978 1.4e-022 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 8.5e-018 1.1e-020 -45.91 0.0 133 489 272 588 0.27198 4.7e-023 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 2.6e-014 3.5e-017 -37.88 0.0 97 493 210 589 0.19675 1.4e-019 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 1.1e-015 1.5e-018 -41.03 0.0 199 491 356 598 0.40530 6.2e-021 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 7.0e-022 9.5e-025 -55.32 0.0 183 491 353 597 0.37271 3.9e-027 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHHACANN 1.0e-005 1.4e-008 -18.08 0.0 94 492 166 539 0.19106 5.7e-011 245 3 M0890_1.02 LHX6 NYAATCAN 1.7e0000 2.2e-003 -6.10 0.0 271 493 375 588 0.54970 9.1e-006 246 3 M0892_1.02 EMX1 NYTAATKAVN 2.0e-005 2.6e-008 -17.45 0.0 249 491 374 586 0.50713 1.1e-010 245 3 M0893_1.02 ZFHX2 NNTAATTANN 2.4e-001 3.2e-004 -8.06 0.0 363 491 451 546 0.73931 1.3e-006 245 3 M0894_1.02 LBX1 TTAATTAG 1.4e-003 1.9e-006 -13.18 0.0 259 493 372 578 0.52535 7.7e-009 246 3 M0896_1.02 VENTX TTAATTAG 2.5e-009 3.4e-012 -26.41 0.0 195 493 322 582 0.39554 1.4e-014 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 1.5e-022 2.1e-025 -56.84 0.0 205 491 378 589 0.41752 8.4e-028 245 3 M0900_1.02 SHOX HTAATTRV 7.7e-006 1.0e-008 -18.38 0.0 261 493 390 588 0.52941 4.2e-011 246 3 M0901_1.02 AC226150.2 CWTGTCAA 1.8e0000 2.5e-003 -6.01 0.0 99 493 163 594 0.20081 1.0e-005 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.7e-008 2.3e-011 -24.48 0.0 268 492 382 546 0.54472 9.5e-014 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 2.8e-002 3.8e-005 -10.17 0.0 225 491 296 518 0.45825 1.6e-007 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 8.0e-007 1.1e-009 -20.66 0.0 254 492 376 571 0.51626 4.4e-012 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.7e-001 2.3e-004 -8.38 0.0 273 493 358 547 0.55375 9.3e-007 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 5.3e-008 7.1e-011 -23.36 0.0 222 494 289 468 0.44939 2.9e-013 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 2.8e-003 3.8e-006 -12.48 0.0 166 494 260 582 0.33603 1.5e-008 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 1.7e-004 2.3e-007 -15.27 0.0 138 492 228 573 0.28049 9.5e-010 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 1.8e-003 2.5e-006 -12.92 0.0 168 492 270 594 0.34146 1.0e-008 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 7.6e-005 1.0e-007 -16.10 0.0 166 492 266 577 0.33740 4.2e-010 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 2.2e-007 2.9e-010 -21.95 0.0 194 492 317 589 0.39431 1.2e-012 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 2.0e-007 2.7e-010 -22.01 0.0 198 492 118 176 0.40244 1.1e-012 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 5.2e-005 7.0e-008 -16.48 0.0 268 492 377 559 0.54472 2.9e-010 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATTA 1.5e-002 2.0e-005 -10.83 0.0 183 493 217 437 0.37120 8.0e-008 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 2.1e-013 2.8e-016 -35.83 0.0 268 492 419 580 0.54472 1.1e-018 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 3.9e-002 5.2e-005 -9.86 0.0 224 492 334 597 0.45528 2.1e-007 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 9.0e-004 1.2e-006 -13.62 0.0 262 492 368 563 0.53252 5.0e-009 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 9.4e-008 1.3e-010 -22.79 0.0 272 492 386 549 0.55285 5.2e-013 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 1.5e-008 2.0e-011 -24.63 0.0 245 493 366 561 0.49696 8.1e-014 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.4e-010 1.9e-013 -29.28 0.0 268 492 417 590 0.54472 7.8e-016 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 6.1e-003 8.2e-006 -11.71 0.0 265 491 377 578 0.53971 3.4e-008 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 1.3e-030 1.7e-033 -75.45 0.0 207 491 396 584 0.42159 7.0e-036 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 8.2e-008 1.1e-010 -22.92 0.0 194 492 314 578 0.39431 4.5e-013 245 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 1.4e0000 1.9e-003 -6.24 0.0 103 491 170 594 0.20978 7.9e-006 245 3 M1863_1.02 FOXD1 GTAAACAW 1.9e-012 2.5e-015 -33.62 0.0 129 493 242 567 0.26166 1.0e-017 246 3 M1868_1.02 GATA2 DSAGATAAGAAHHW 2.3e-002 3.0e-005 -10.40 0.0 265 487 366 561 0.54415 1.2e-007 243 3 M2267_1.02 CDX2 TTTTATKRCHB 1.2e-019 1.6e-022 -50.20 0.0 204 490 362 575 0.41633 6.5e-025 244 3 M2270_1.02 DUX4 TAAYYYAATCA 3.3e-002 4.5e-005 -10.02 0.0 156 490 220 515 0.31837 1.8e-007 244 3 M2278_1.02 FOS DVTGASTCATB 5.8e-005 7.8e-008 -16.36 0.0 296 490 386 526 0.60408 3.2e-010 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 1.1e-005 1.5e-008 -17.99 0.0 58 486 126 589 0.11934 6.4e-011 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 5.8e-015 7.7e-018 -39.40 0.0 172 488 312 577 0.35246 3.2e-020 243 3 M2289_1.02 JUN DDRATGATGTMAT 9.8e-004 1.3e-006 -13.54 0.0 264 488 346 520 0.54098 5.4e-009 243 3 M2292_1.02 JUND DRTGASTCATS 1.1e-004 1.4e-007 -15.76 0.0 188 490 261 503 0.38367 5.9e-010 244 3 M2385_1.02 FOXP2 RWGTAAACAVR 9.3e-015 1.3e-017 -38.92 0.0 128 490 253 580 0.26122 5.1e-020 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 5.2e-002 7.0e-005 -9.56 0.0 322 486 425 558 0.66255 2.9e-007 242 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 2.1e0000 2.8e-003 -5.88 0.0 334 486 404 524 0.68724 1.2e-005 242 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 1.9e0000 2.5e-003 -5.98 0.0 297 487 345 490 0.60986 1.0e-005 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 3.8e-014 5.1e-017 -37.52 0.0 128 486 257 593 0.26337 2.1e-019 242 3 M4600_1.02 GATA1 NSAGATAAGVV 2.6e-001 3.5e-004 -7.95 0.0 120 490 190 571 0.24490 1.5e-006 244 3 M4619_1.02 FOSL1 BGGTGASTCAT 4.4e-003 5.9e-006 -12.03 0.0 178 490 236 487 0.36327 2.4e-008 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 2.2e-001 3.0e-004 -8.12 0.0 252 486 312 499 0.51852 1.2e-006 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 5.6e-005 7.5e-008 -16.40 0.0 156 484 209 451 0.32231 3.1e-010 241 3 M4681_1.02 BACH2 TGCTGAGTCA 4.9e-001 6.6e-004 -7.32 0.0 263 491 299 466 0.53564 2.7e-006 245 3 M5284_1.02 ALX3 BNTAATTRGY 3.2e-002 4.3e-005 -10.05 0.0 169 491 258 575 0.34420 1.8e-007 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 3.5e-004 4.8e-007 -14.56 0.0 172 488 262 551 0.35246 2.0e-009 243 3 M5291_1.02 ARX YTAATTNRATTAN 9.4e-005 1.3e-007 -15.88 0.0 178 488 258 518 0.36475 5.2e-010 243 3 M5292_1.02 ATF4 RKATGAYGCAATM 4.7e-001 6.3e-004 -7.36 0.0 248 488 289 470 0.50820 2.6e-006 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 8.2e-004 1.1e-006 -13.72 0.0 275 487 222 306 0.56468 4.5e-009 243 3 M5294_1.02 BARHL2 NHTAAAYGNT 1.1e-002 1.5e-005 -11.12 0.0 65 491 124 580 0.13238 6.1e-008 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 1.4e-003 1.9e-006 -13.19 0.0 294 484 359 491 0.60744 7.7e-009 241 3 M5302_1.02 BATF3 TGATGACGTCATCA 2.7e-001 3.6e-004 -7.94 0.0 215 487 92 144 0.44148 1.5e-006 243 3 M5310_1.02 BSX NTAATBRS 2.2e-009 2.9e-012 -26.57 0.0 261 493 396 576 0.52941 1.2e-014 246 3 M5322_1.02 CPEB1 TTTTTATT 1.3e0000 1.7e-003 -6.36 0.0 185 493 272 587 0.37525 7.0e-006 246 3 M5323_1.02 CREB3 KGRTGACGTCAYNN 2.1e0000 2.9e-003 -5.86 0.0 299 487 218 297 0.61396 1.2e-005 243 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 1.3e-002 1.7e-005 -10.96 0.0 33 483 23 95 0.06832 7.2e-008 241 3 M5339_1.02 DLX1 NNTAATTRNN 1.7e-001 2.2e-004 -8.41 0.0 113 491 186 585 0.23014 9.1e-007 245 3 M5342_1.02 DLX4 NTAATTRN 8.0e-008 1.1e-010 -22.95 0.0 271 493 411 592 0.54970 4.4e-013 246 3 M5343_1.02 DLX5 NTAATTRN 2.3e-005 3.1e-008 -17.30 0.0 253 493 380 590 0.51318 1.2e-010 246 3 M5344_1.02 DLX6 NTAATTRN 8.0e-007 1.1e-009 -20.66 0.0 253 493 386 591 0.51318 4.4e-012 246 3 M5346_1.02 DPRX SHTAATCCNN 1.9e-001 2.6e-004 -8.25 0.0 185 491 276 583 0.37678 1.1e-006 245 3 M5348_1.02 DRGX NTAATYHAATTAN 3.9e-002 5.2e-005 -9.86 0.0 254 488 329 521 0.52049 2.1e-007 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 9.5e-001 1.3e-003 -6.66 0.0 176 488 250 552 0.36066 5.3e-006 243 3 M5388_1.02 EMX2 NYTAATTAVB 3.8e-003 5.1e-006 -12.18 0.0 273 491 376 560 0.55601 2.1e-008 245 3 M5390_1.02 EN1 VBTAATTRSB 3.3e-006 4.4e-009 -19.24 0.0 275 491 405 583 0.56008 1.8e-011 245 3 M5394_1.02 EN2 NNTAATTRVD 4.7e-004 6.3e-007 -14.28 0.0 271 491 386 574 0.55193 2.6e-009 245 3 M5414_1.02 ESX1 DNTAATTRRN 1.1e-008 1.5e-011 -24.95 0.0 253 491 393 589 0.51527 5.9e-014 245 3 M5427_1.02 EVX1 SNTAATTABB 1.1e-003 1.5e-006 -13.44 0.0 169 491 268 582 0.34420 5.9e-009 245 3 M5428_1.02 EVX2 NNTAATKABB 8.5e-005 1.1e-007 -15.98 0.0 169 491 275 587 0.34420 4.7e-010 245 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 1.0e0000 1.3e-003 -6.62 0.0 191 487 268 551 0.39220 5.5e-006 243 3 M5446_1.02 FOXD4L2 RTAAACA 1.8e-022 2.4e-025 -56.67 0.0 130 494 280 594 0.26316 9.9e-028 246 3 M5460_1.02 FOXL1 RTAAACA 2.8e-022 3.7e-025 -56.26 0.0 128 494 276 592 0.25911 1.5e-027 246 3 M5480_1.02 GBX1 RBTAATTRGB 7.6e-005 1.0e-007 -16.10 0.0 261 491 365 551 0.53157 4.2e-010 245 3 M5481_1.02 GBX2 NYTAATTRSB 1.1e-006 1.5e-009 -20.31 0.0 261 491 382 568 0.53157 6.2e-012 245 3 M5500_1.02 GSC VYTAATCCBH 9.6e-002 1.3e-004 -8.95 0.0 83 491 142 566 0.16904 5.3e-007 245 3 M5501_1.02 GSC2 NYTAATCCBH 2.3e-003 3.0e-006 -12.70 0.0 185 491 286 583 0.37678 1.2e-008 245 3 M5502_1.02 GSX1 NBTAATKRSN 6.5e-009 8.7e-012 -25.46 0.0 269 491 407 581 0.54786 3.6e-014 245 3 M5503_1.02 GSX2 DYTAATKRVN 2.6e-008 3.5e-011 -24.08 0.0 271 491 412 588 0.55193 1.4e-013 245 3 M5517_1.02 HMBOX1 MYTAGTTAMS 6.3e0000 8.4e-003 -4.78 0.0 205 491 276 549 0.41752 3.5e-005 245 3 M5518_1.02 HMX1 NDTTAATTGNT 9.5e-013 1.3e-015 -34.30 0.0 278 490 433 586 0.56735 5.2e-018 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 1.8e-012 2.4e-015 -33.68 0.0 252 490 408 593 0.51429 9.7e-018 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 1.3e-011 1.7e-014 -31.70 0.0 278 490 434 592 0.56735 7.0e-017 244 3 M5541_1.02 HOXB2 NNTAATKANN 5.8e-006 7.8e-009 -18.67 0.0 271 491 405 591 0.55193 3.2e-011 245 3 M5542_1.02 HOXB3 NYTAATKRNN 5.8e-006 7.8e-009 -18.67 0.0 271 491 405 591 0.55193 3.2e-011 245 3 M5543_1.02 HOXB5 NHTAATKRNN 3.7e-007 5.0e-010 -21.41 0.0 279 491 422 597 0.56823 2.1e-012 245 3 M5544_1.02 HOXC10 DTTTWATKDB 5.7e-018 7.7e-021 -46.32 0.0 207 491 371 595 0.42159 3.1e-023 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 1.4e-014 1.8e-017 -38.53 0.0 208 490 352 573 0.42449 7.6e-020 244 3 M5551_1.02 HOXC12 TTTTATTRC 5.6e-014 7.6e-017 -37.12 0.0 206 492 356 592 0.41870 3.1e-019 245 3 M5553_1.02 HOXC13 CYAATAAAAH 5.7e-011 7.6e-014 -30.20 0.0 207 491 347 589 0.42159 3.1e-016 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 3.0e-008 4.0e-011 -23.93 0.0 195 491 306 554 0.39715 1.6e-013 245 3 M5557_1.02 HOXD12 GTAATAAAA 4.7e-015 6.3e-018 -39.60 0.0 194 492 344 591 0.39431 2.6e-020 245 3 M5581_1.02 IRX2 CWTGTCRTGTWN 1.3e0000 1.7e-003 -6.35 0.0 113 489 180 578 0.23108 7.1e-006 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 8.8e-001 1.2e-003 -6.74 0.0 115 489 187 593 0.23517 4.8e-006 244 3 M5583_1.02 ISL2 YTAAKTGC 3.9e-006 5.3e-009 -19.06 0.0 195 493 316 595 0.39554 2.1e-011 246 3 M5584_1.02 ISX YTAATCTAATTAR 1.0e-001 1.4e-004 -8.87 0.0 212 488 236 426 0.43443 5.8e-007 243 3 M5587_1.02 JDP2 ATGASTCAT 8.7e-008 1.2e-010 -22.87 0.0 214 492 291 488 0.43496 4.8e-013 245 3 M5602_1.02 LHX9 YTAATTRN 1.4e-004 1.9e-007 -15.48 0.0 253 493 376 589 0.51318 7.7e-010 246 3 M5604_1.02 LMX1A YTAATTAA 5.4e-005 7.3e-008 -16.43 0.0 227 493 332 561 0.46045 3.0e-010 246 3 M5605_1.02 LMX1B TTAATTRN 6.5e-009 8.8e-012 -25.46 0.0 279 493 420 586 0.56592 3.6e-014 246 3 M5623_1.02 MEOX1 VSTAATTAHC 1.7e-004 2.3e-007 -15.29 0.0 273 491 392 577 0.55601 9.3e-010 245 3 M5624_1.02 MEOX2 DSTAATTAWN 8.6e-004 1.2e-006 -13.67 0.0 195 491 302 586 0.39715 4.7e-009 245 3 M5631_1.02 MIXL1 NBTAATTRVN 1.0e-006 1.4e-009 -20.42 0.0 271 491 405 587 0.55193 5.5e-012 245 3 M5635_1.02 MNX1 TTTAATTRNH 2.5e-013 3.4e-016 -35.61 0.0 279 491 435 585 0.56823 1.4e-018 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 7.7e-005 1.0e-007 -16.09 0.0 171 483 231 468 0.35404 4.3e-010 241 3 M5672_1.02 NOTO NBTAATTARN 7.2e-002 9.6e-005 -9.25 0.0 163 491 248 573 0.33198 3.9e-007 245 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 8.3e0000 1.1e-002 -4.50 0.0 139 487 173 466 0.28542 4.6e-005 243 3 M5714_1.02 PHOX2A TAATYYAATTA 1.9e-002 2.5e-005 -10.59 0.0 268 490 359 547 0.54694 1.0e-007 244 3 M5715_1.02 PHOX2B TAATYYAATTA 6.6e-002 8.9e-005 -9.33 0.0 198 490 283 556 0.40408 3.6e-007 244 3 M5717_1.02 PITX1 NHTAATCCC 9.1e0000 1.2e-002 -4.41 0.0 184 492 263 579 0.37398 5.0e-005 245 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 5.2e0000 7.0e-003 -4.96 0.0 163 485 220 522 0.33608 2.9e-005 242 3 M5746_1.02 POU6F2 WTAATKAGST 2.3e-002 3.0e-005 -10.40 0.0 167 491 251 564 0.34012 1.2e-007 245 3 M5771_1.02 RAX DYTAATTRRY 6.6e-005 8.9e-008 -16.24 0.0 253 491 374 581 0.51527 3.6e-010 245 3 M5772_1.02 RAX2 BTAATTRR 8.4e-006 1.1e-008 -18.30 0.0 259 493 384 582 0.52535 4.6e-011 246 3 M5782_1.02 RHOXF1 RGATWAKCC 4.4e0000 6.0e-003 -5.12 0.0 160 492 226 552 0.32520 2.4e-005 245 3 M5807_1.02 SHOX2 YTAATTRR 2.2e-005 2.9e-008 -17.34 0.0 265 493 388 581 0.53753 1.2e-010 246 3 M5941_1.02 UNCX NTAATYBAATTAN 8.5e-003 1.1e-005 -11.38 0.0 212 488 314 574 0.43443 4.7e-008 243 3 M5944_1.02 VAX1 YTAATTAN 2.2e-004 2.9e-007 -15.05 0.0 227 493 344 588 0.46045 1.2e-009 246 3 M5945_1.02 VAX2 YTAATTAN 2.7e-005 3.7e-008 -17.12 0.0 227 493 348 589 0.46045 1.5e-010 246 3 M5949_1.02 VSX1 YTAATTAN 2.2e-001 3.0e-004 -8.13 0.0 245 493 341 572 0.49696 1.2e-006 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 1.6e-004 2.1e-007 -15.38 0.0 215 489 223 374 0.43967 8.6e-010 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 1.8e-016 2.5e-019 -42.84 0.0 199 491 355 592 0.40530 1.0e-021 245 3 M6141_1.02 ALX1 TAATBYAATTAY 6.6e-001 8.9e-004 -7.03 0.0 191 489 272 561 0.39059 3.6e-006 244 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 5.3e0000 7.2e-003 -4.94 0.0 127 479 169 483 0.26514 3.0e-005 239 3 M6157_1.02 BARX2 TYRWTAATKR 1.1e-002 1.5e-005 -11.12 0.0 197 491 295 576 0.40122 6.0e-008 245 3 M6167_1.02 CDX1 HCATAAAD 4.2e-005 5.6e-008 -16.69 0.0 209 493 328 594 0.42394 2.3e-010 246 3 M6180_1.02 CREB1 RTGACGTMA 5.9e0000 7.9e-003 -4.84 0.0 262 492 341 552 0.53252 3.3e-005 245 3 M6182_1.02 CRX YTAATCHB 1.4e-001 1.8e-004 -8.61 0.0 137 493 217 586 0.27789 7.4e-007 246 3 M6189_1.02 DLX3 GMTAATTRSW 2.7e-004 3.6e-007 -14.84 0.0 273 491 383 563 0.55601 1.5e-009 245 3 M6228_1.02 FOSB CTGACTCAYV 4.4e-002 5.9e-005 -9.73 0.0 139 491 222 583 0.28310 2.4e-007 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 6.8e-018 9.2e-021 -46.14 0.0 146 488 290 588 0.29918 3.8e-023 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 3.4e-014 4.5e-017 -37.63 0.0 128 486 238 535 0.26337 1.9e-019 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 7.0e0000 9.4e-003 -4.67 0.0 52 486 86 518 0.10700 3.9e-005 242 3 M6237_1.02 FOXD3 AAACAAACA 9.7e-011 1.3e-013 -29.67 0.0 148 492 271 591 0.30081 5.3e-016 245 3 M6238_1.02 FOXF1 WAAATAAACAW 3.6e-020 4.8e-023 -51.39 0.0 180 490 338 584 0.36735 2.0e-025 244 3 M6239_1.02 FOXF2 HWADGTAAACA 3.3e-020 4.4e-023 -51.47 0.0 138 490 283 584 0.28163 1.8e-025 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 1.7e-018 2.3e-021 -47.52 0.0 145 491 288 584 0.29532 9.4e-024 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 1.0e-004 1.4e-007 -15.77 0.0 124 488 207 555 0.25410 5.8e-010 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 2.0e-005 2.7e-008 -17.42 0.0 70 488 144 594 0.14344 1.1e-010 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 6.8e-009 9.1e-012 -25.42 0.0 51 485 124 587 0.10515 3.8e-014 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 3.0e-015 4.1e-018 -40.04 0.0 132 488 265 590 0.27049 1.7e-020 243 3 M6247_1.02 FOXO4 MRTAAACAA 1.5e-011 2.0e-014 -31.56 0.0 148 492 273 588 0.30081 8.1e-017 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 7.2e-009 9.7e-012 -25.36 0.0 213 489 319 534 0.43558 4.0e-014 244 3 M6256_1.02 GATA4 RSWGATAAV 4.0e-001 5.4e-004 -7.52 0.0 256 492 360 584 0.52033 2.2e-006 245 3 M6257_1.02 GATA5 WVANWGATAABTYRRHK 5.5e0000 7.4e-003 -4.91 0.0 116 484 178 564 0.23967 3.1e-005 241 3 M6258_1.02 GATA6 NWGATAA 2.2e-006 3.0e-009 -19.63 0.0 172 494 282 584 0.34818 1.2e-011 246 3 M6277_1.02 HLF SKRTTACRYAAYH 3.1e0000 4.2e-003 -5.47 0.0 180 488 214 461 0.36885 1.7e-005 243 3 M6282_1.02 HNF1B GTTAAWYATTAACY 2.7e-001 3.7e-004 -7.91 0.0 223 487 306 548 0.45791 1.5e-006 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 1.2e0000 1.7e-003 -6.39 0.0 187 487 259 544 0.38398 6.9e-006 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 1.1e-004 1.4e-007 -15.77 0.0 191 489 299 580 0.39059 5.8e-010 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.8e-012 2.5e-015 -33.64 0.0 272 490 423 582 0.55510 1.0e-017 244 3 M6292_1.02 HOXA5 CATTAATYAR 1.2e0000 1.6e-003 -6.44 0.0 159 491 232 564 0.32383 6.5e-006 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 4.0e-002 5.3e-005 -9.84 0.0 176 488 226 476 0.36066 2.2e-007 243 3 M6297_1.02 HOXB7 MATYAATCAA 1.5e-008 2.0e-011 -24.65 0.0 187 491 283 523 0.38086 8.0e-014 245 3 M6298_1.02 HOXB8 BMATTAATCAA 6.3e-005 8.5e-008 -16.28 0.0 166 490 238 502 0.33878 3.5e-010 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 8.0e-002 1.1e-004 -9.14 0.0 168 486 176 373 0.34568 4.4e-007 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 9.3e-001 1.2e-003 -6.69 0.0 211 487 298 566 0.43326 5.1e-006 243 3 M6301_1.02 HOXD10 AATTAAARCA 2.8e-002 3.8e-005 -10.18 0.0 165 491 258 589 0.33605 1.6e-007 245 3 M6304_1.02 HOXD9 HMATNAAWYT 4.5e-014 6.0e-017 -37.35 0.0 181 491 323 586 0.36864 2.4e-019 245 3 M6315_1.02 ISL1 SYTAATR 2.3e-003 3.1e-006 -12.69 0.0 196 494 296 577 0.39676 1.3e-008 246 3 M6331_1.02 MAFB WGCTGACDS 9.0e-001 1.2e-003 -6.72 0.0 216 492 315 593 0.43902 4.9e-006 245 3 M6333_1.02 MAFG HATGACT 4.0e-003 5.3e-006 -12.14 0.0 328 494 450 586 0.66397 2.2e-008 246 3 M6347_1.02 MSX2 TAATTNK 5.0e-001 6.8e-004 -7.30 0.0 122 494 191 575 0.24696 2.7e-006 246 3 M6357_1.02 NANOG KTTAATGG 1.3e-002 1.7e-005 -10.96 0.0 95 493 164 575 0.19270 7.1e-008 246 3 M6359_1.02 NFE2L1 NATGACD 7.6e-004 1.0e-006 -13.79 0.0 286 494 410 590 0.57895 4.2e-009 246 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 5.3e-001 7.2e-004 -7.24 0.0 149 489 231 587 0.30470 2.9e-006 244 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 2.6e0000 3.4e-003 -5.67 0.0 199 487 222 436 0.40862 1.4e-005 243 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 6.0e-003 8.1e-006 -11.73 0.0 199 489 296 568 0.40695 3.3e-008 244 3 M6376_1.02 NKX2-5 TYAAGTG 1.4e0000 1.9e-003 -6.27 0.0 212 494 308 595 0.42915 7.7e-006 246 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 1.4e0000 1.9e-003 -6.29 0.0 64 488 110 554 0.13115 7.6e-006 243 3 M6380_1.02 NOBOX HTAATTRSY 1.3e-004 1.8e-007 -15.53 0.0 278 492 395 574 0.56504 7.4e-010 245 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 5.1e0000 6.8e-003 -4.98 0.0 215 483 289 542 0.44513 2.9e-005 241 3 M6412_1.02 PBX1 VHMATCAATCAAWTH 2.1e-001 2.8e-004 -8.18 0.0 174 486 262 575 0.35802 1.2e-006 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 6.5e-003 8.8e-006 -11.65 0.0 170 486 270 589 0.34979 3.6e-008 242 3 M6415_1.02 PDX1 CTAATTACY 1.7e-006 2.3e-009 -19.89 0.0 268 492 373 543 0.54472 9.4e-012 245 3 M6419_1.02 PKNOX1 HATCARTCAABYB 1.7e-004 2.2e-007 -15.31 0.0 232 488 342 568 0.47541 9.2e-010 243 3 M6426_1.02 POU3F2 CATRAATWWT 1.8e0000 2.4e-003 -6.01 0.0 145 491 221 584 0.29532 1.0e-005 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 6.4e-003 8.6e-006 -11.67 0.0 160 488 235 533 0.32787 3.5e-008 243 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 2.7e-003 3.6e-006 -12.53 0.0 166 486 259 569 0.34156 1.5e-008 242 3 M6440_1.02 PRRX2 YTAATTR 2.3e-001 3.2e-004 -8.06 0.0 258 494 349 561 0.52227 1.3e-006 246 3 M6471_1.02 SOX13 YATTGTTY 6.1e-002 8.2e-005 -9.41 0.0 135 493 217 589 0.27383 3.3e-007 246 3 M6477_1.02 SOX5 WAACAATR 2.9e0000 3.9e-003 -5.55 0.0 199 493 290 593 0.40365 1.6e-005 246 3 M6490_1.02 SRY DAAACAAWR 2.3e-001 3.1e-004 -8.07 0.0 68 492 124 591 0.13821 1.3e-006 245 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.6e-008 2.1e-011 -24.59 0.0 237 487 367 572 0.48665 8.6e-014 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 2.8e-002 3.7e-005 -10.21 0.0 196 490 259 504 0.40000 1.5e-007 244 3 M6555_1.02 ZNF333 BKATAATGA 5.4e-002 7.3e-005 -9.53 0.0 194 492 265 526 0.39431 3.0e-007 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).