******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:92331201-92331701 1.0000 100 chr13:112213419-11221391 1.0000 100 chr1:231037946-231038446 1.0000 100 chr5:124742196-124742696 1.0000 100 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chr1:3403704-3404204 1.0000 100 chr8:37359521-37360021 1.0000 100 chrX:136057527-136058027 1.0000 100 chr17:61335987-61336487 1.0000 100 chr10:22552784-22553284 1.0000 100 chr6:1667161-1667661 1.0000 100 chr3:138833420-138833920 1.0000 100 chr8:37637880-37638380 1.0000 100 chr5:124655900-124656400 1.0000 100 chr5:94469761-94470261 1.0000 100 chr3:190972921-190973421 1.0000 100 chr1:201721118-201721618 1.0000 100 chr1:59214665-59215165 1.0000 100 chr12:54033461-54033961 1.0000 100 chr2:46481488-46481988 1.0000 100 chr8:37547855-37548355 1.0000 100 chr5:124734986-124735486 1.0000 100 chr1:228781066-228781566 1.0000 100 chr6:137665268-137665768 1.0000 100 chrX:38061242-38061742 1.0000 100 chr8:37479291-37479791 1.0000 100 chr18:23684577-23685077 1.0000 100 chr7:33669144-33669644 1.0000 100 chr15:69143642-69144142 1.0000 100 chr7:80876791-80877291 1.0000 100 chr12:54052075-54052575 1.0000 100 chr2:31008532-31009032 1.0000 100 chr10:44752840-44753340 1.0000 100 chr10:75613678-75614178 1.0000 100 chr5:17305870-17306370 1.0000 100 chr5:74632108-74632608 1.0000 100 chr10:50463970-50464470 1.0000 100 chr1:229221437-229221937 1.0000 100 chr5:6419268-6419768 1.0000 100 chr15:59953466-59953966 1.0000 100 chr7:116218110-116218610 1.0000 100 chr4:80307274-80307774 1.0000 100 chr6:2028605-2029105 1.0000 100 chr3:16482918-16483418 1.0000 100 chr1:81126876-81127376 1.0000 100 chr3:42819882-42820382 1.0000 100 chr6:4320850-4321350 1.0000 100 chr8:28445242-28445742 1.0000 100 chr1:8439096-8439596 1.0000 100 chr4:110904623-110905123 1.0000 100 chr12:114914221-11491472 1.0000 100 chr9:18976681-18977181 1.0000 100 chr6:143755252-143755752 1.0000 100 chr19:33293248-33293748 1.0000 100 chr7:135716570-135717070 1.0000 100 chr1:215581871-215582371 1.0000 100 chr15:67792459-67792959 1.0000 100 chr16:25049563-25050063 1.0000 100 chr5:175378372-175378872 1.0000 100 chr14:32134446-32134946 1.0000 100 chr7:133492178-133492678 1.0000 100 chr8:109611165-109611665 1.0000 100 chr8:71355233-71355733 1.0000 100 chr6:168147142-168147642 1.0000 100 chr16:15590842-15591342 1.0000 100 chr3:194350325-194350825 1.0000 100 chr9:85743168-85743668 1.0000 100 chr10:75379151-75379651 1.0000 100 chr1:81032869-81033369 1.0000 100 chr3:17730413-17730913 1.0000 100 chr14:99821632-99822132 1.0000 100 chr5:69521066-69521566 1.0000 100 chr8:25998475-25998975 1.0000 100 chr20:53609851-53610351 1.0000 100 chr16:1271751-1272251 1.0000 100 chr1:80403329-80403829 1.0000 100 chr1:86774466-86774966 1.0000 100 chr19:40920945-40921445 1.0000 100 chr14:36835059-36835559 1.0000 100 chr10:72204287-72204787 1.0000 100 chr10:77287666-77288166 1.0000 100 chr17:34981743-34982243 1.0000 100 chr8:37360450-37360950 1.0000 100 chr3:181328985-181329485 1.0000 100 chr1:85274861-85275361 1.0000 100 chr5:124740931-124741431 1.0000 100 chr5:59303262-59303762 1.0000 100 chr8:37302614-37303114 1.0000 100 chr6:82260170-82260670 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 599 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59900 N= 599 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.293 C 0.207 G 0.207 T 0.293 ******************************************************************************** ******************************************************************************** MOTIF WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 width = 49 sites = 24 llr = 1036 E-value = 2.1e-248 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 31117:::a:::9:::9:::a:::9:::9:::9:::81::81:171::2 pos.-specific C 1:::::::::::1::::::::::::::::::::1:1:::1:::::1::: probability G :211:1::::::::1:::::::1:1::::::1:::::::::::1:::12 matrix T 578839a9:a9a:a9a1aa9:a99:aa91aa9:8a929a929a838a86 bits 2.3 2.0 1.8 * * ** * * * 1.6 * ** * * * ** ** ** ** * * * * Relative 1.4 ****** *** ******* *** **** ** * ** * Entropy 1.1 ************************************** ** (62.3 bits) 0.9 * ************************************** ** 0.7 *********************************************** 0.5 ************************************************* 0.2 ************************************************* 0.0 ------------------------------------------------- Multilevel TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT consensus A T T T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chr3:193970364-193970864 - 27 7.53e-27 TTTAACTCAC TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT TATTATACTT chr17:40325030-40325530 - 22 7.53e-27 CCCAGCCTCT TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT TGAGATGGAG chr5:160008637-160009137 - 14 1.51e-26 TTCACTATTT ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT TGAGACAGAG chr5:139489857-139490357 + 27 1.51e-26 gagatctacc atttatttatttatttatttatttatttatttatttatttatttatttt tgagatggag chr20:41059184-41059684 - 25 1.51e-26 CCACCACCTT ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT CTAGCAGTTT chr5:34182251-34182751 - 23 3.54e-26 GGCCCAGATT TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTG TGATGGTCTC chr19:34234636-34235136 + 30 9.21e-26 tctacaagtt atttatttatttatttatttatttatttatttatttatttatttatttG gagccagagt chr22:18020690-18021190 - 27 1.16e-25 GGGCCATTTT ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA TTTGAGACAG chr19:31332880-31333380 - 25 2.40e-25 TCACCCCTGG ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGT GAGACAGGAT chr16:30570496-30570996 + 25 3.42e-25 aagcagGGGC TAttatttatttatttatttatttatttatttatttatttatttatttt tgagacggag chr19:32398352-32398852 - 27 7.43e-25 GCCAAACTTC TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGA GACAGGATTT chr16:21820748-21821248 + 30 4.97e-24 ACCCCCTTGA Ctttatttatttatttatttatttatttatttatttatttattttcttt tgagaccgag chr19:35881941-35882441 - 23 5.64e-24 ATCACTTGGA TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTATTTTT ATTTTTATTT chr21:36122964-36123464 - 23 6.68e-24 CATATTTTTT TATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTG AGACAGGCTC chr5:32157746-32158246 - 32 8.51e-24 TGTGTGTGTG TGTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT GAGACAGAGT chr17:35567290-35567790 - 27 6.24e-23 CCACGCCCGG CTGATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT CCTGAGATGG chr1:6404513-6405013 - 2 3.93e-21 ACAGGTCATG TCACTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA T chr1:225654693-225655193 - 25 7.63e-21 AAACCAGGAA TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTAGATGG AGTCTCGCTC chr5:32367215-32367715 - 34 4.48e-18 TCAAGGCTAC AGTGAGTTATTTATTTATTTATTTATTTATTTACTTTATTTATTTATTT ATTTATTATT chr10:72580219-72580719 + 22 3.54e-15 TCATCCAAGC TTTTGCTGatttatttatttatttaattaattaatttatttatttattt attttgagac chr6:133248608-133249108 + 51 1.56e-13 GGCAATTCTA CTGttttattttgtttttttttttgtttgtttgtttttGCATTAACTTT A chr6:56529579-56530079 - 24 6.73e-13 ATGTCATGCT TTAGTTTTATTTATGTTTTCATTTTTATTTGTCCATTCTTTTTGTTTTT CTTCTTTATT chr2:109029732-109030232 + 20 1.66e-12 ACAAGGATCC TGGTTGCTATCTCTGTATTGATGGATTGATTGattcattcattcagtaa gcatttactg chr6:43321903-43322403 - 11 1.99e-12 TTCATCTCAA AGTGTTTTATACCTTCTTTTATGAGTTCTTTGACTCATTGATTGTTTTA GGAACGTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:193970364-193970864 7.5e-27 26_[-1]_25 chr17:40325030-40325530 7.5e-27 21_[-1]_30 chr5:160008637-160009137 1.5e-26 13_[-1]_38 chr5:139489857-139490357 1.5e-26 26_[+1]_25 chr20:41059184-41059684 1.5e-26 24_[-1]_27 chr5:34182251-34182751 3.5e-26 22_[-1]_29 chr19:34234636-34235136 9.2e-26 29_[+1]_22 chr22:18020690-18021190 1.2e-25 26_[-1]_25 chr19:31332880-31333380 2.4e-25 24_[-1]_27 chr16:30570496-30570996 3.4e-25 24_[+1]_27 chr19:32398352-32398852 7.4e-25 26_[-1]_25 chr16:21820748-21821248 5e-24 29_[+1]_22 chr19:35881941-35882441 5.6e-24 22_[-1]_29 chr21:36122964-36123464 6.7e-24 22_[-1]_29 chr5:32157746-32158246 8.5e-24 31_[-1]_20 chr17:35567290-35567790 6.2e-23 26_[-1]_25 chr1:6404513-6405013 3.9e-21 1_[-1]_50 chr1:225654693-225655193 7.6e-21 24_[-1]_27 chr5:32367215-32367715 4.5e-18 33_[-1]_18 chr10:72580219-72580719 3.5e-15 21_[+1]_30 chr6:133248608-133249108 1.6e-13 50_[+1]_1 chr6:56529579-56530079 6.7e-13 23_[-1]_28 chr2:109029732-109030232 1.7e-12 19_[+1]_32 chr6:43321903-43322403 2e-12 10_[-1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT width=49 seqs=24 chr3:193970364-193970864 ( 27) TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr17:40325030-40325530 ( 22) TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr5:160008637-160009137 ( 14) ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr5:139489857-139490357 ( 27) ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr20:41059184-41059684 ( 25) ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr5:34182251-34182751 ( 23) TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTG 1 chr19:34234636-34235136 ( 30) ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTG 1 chr22:18020690-18021190 ( 27) ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA 1 chr19:31332880-31333380 ( 25) ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGT 1 chr16:30570496-30570996 ( 25) TATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr19:32398352-32398852 ( 27) TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGA 1 chr16:21820748-21821248 ( 30) CTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTCTTT 1 chr19:35881941-35882441 ( 23) TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTATTTTT 1 chr21:36122964-36123464 ( 23) TATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTG 1 chr5:32157746-32158246 ( 32) TGTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr17:35567290-35567790 ( 27) CTGATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 1 chr1:6404513-6405013 ( 2) TCACTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA 1 chr1:225654693-225655193 ( 25) TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTAGATGG 1 chr5:32367215-32367715 ( 34) AGTGAGTTATTTATTTATTTATTTATTTATTTACTTTATTTATTTATTT 1 chr10:72580219-72580719 ( 22) TTTTGCTGATTTATTTATTTATTTAATTAATTAATTTATTTATTTATTT 1 chr6:133248608-133249108 ( 51) CTGTTTTATTTTGTTTTTTTTTTTGTTTGTTTGTTTTTGCATTAACTTT 1 chr6:56529579-56530079 ( 24) TTAGTTTTATTTATGTTTTCATTTTTATTTGTCCATTCTTTTTGTTTTT 1 chr2:109029732-109030232 ( 20) TGGTTGCTATCTCTGTATTGATGGATTGATTGATTCATTCATTCAGTAA 1 chr6:43321903-43322403 ( 11) AGTGTTTTATACCTTCTTTTATGAGTTCTTTGACTCATTGATTGTTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 31148 bayes= 9.99944 E= 2.1e-248 19 -73 -1123 89 -181 -231 -31 127 -181 -1123 -73 143 -181 -231 -73 135 118 -1123 -231 -1 -1123 -231 -131 158 -1123 -231 -1123 171 -281 -1123 -231 164 171 -1123 -1123 -281 -1123 -1123 -1123 177 -281 -231 -1123 164 -1123 -231 -1123 171 158 -131 -231 -1123 -1123 -1123 -1123 177 -1123 -1123 -131 164 -1123 -231 -1123 171 158 -1123 -1123 -123 -1123 -1123 -1123 177 -1123 -1123 -1123 177 -1123 -231 -231 164 171 -1123 -1123 -281 -1123 -1123 -1123 177 -1123 -1123 -131 164 -281 -1123 -231 164 158 -1123 -131 -281 -281 -1123 -1123 171 -281 -1123 -1123 171 -1123 -231 -231 164 158 -1123 -231 -181 -281 -1123 -1123 171 -1123 -1123 -231 171 -1123 -1123 -131 164 164 -231 -231 -1123 -281 -73 -1123 151 -281 -1123 -1123 171 -1123 -131 -1123 164 151 -1123 -1123 -81 -181 -231 -1123 158 -1123 -1123 -231 171 -1123 -131 -231 158 143 -1123 -1123 -49 -181 -1123 -1123 164 -1123 -1123 -1123 177 -123 -231 -131 135 118 -1123 -231 -1 -123 -131 -231 135 -1123 -1123 -1123 177 -281 -1123 -73 151 -49 -1123 -31 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 24 E= 2.1e-248 0.333333 0.125000 0.000000 0.541667 0.083333 0.041667 0.166667 0.708333 0.083333 0.000000 0.125000 0.791667 0.083333 0.041667 0.125000 0.750000 0.666667 0.000000 0.041667 0.291667 0.000000 0.041667 0.083333 0.875000 0.000000 0.041667 0.000000 0.958333 0.041667 0.000000 0.041667 0.916667 0.958333 0.000000 0.000000 0.041667 0.000000 0.000000 0.000000 1.000000 0.041667 0.041667 0.000000 0.916667 0.000000 0.041667 0.000000 0.958333 0.875000 0.083333 0.041667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.041667 0.000000 0.958333 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.041667 0.041667 0.916667 0.958333 0.000000 0.000000 0.041667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.041667 0.000000 0.041667 0.916667 0.875000 0.000000 0.083333 0.041667 0.041667 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.958333 0.000000 0.041667 0.041667 0.916667 0.875000 0.000000 0.041667 0.083333 0.041667 0.000000 0.000000 0.958333 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 0.083333 0.916667 0.916667 0.041667 0.041667 0.000000 0.041667 0.125000 0.000000 0.833333 0.041667 0.000000 0.000000 0.958333 0.000000 0.083333 0.000000 0.916667 0.833333 0.000000 0.000000 0.166667 0.083333 0.041667 0.000000 0.875000 0.000000 0.000000 0.041667 0.958333 0.000000 0.083333 0.041667 0.875000 0.791667 0.000000 0.000000 0.208333 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.125000 0.041667 0.083333 0.750000 0.666667 0.000000 0.041667 0.291667 0.125000 0.083333 0.041667 0.750000 0.000000 0.000000 0.000000 1.000000 0.041667 0.000000 0.125000 0.833333 0.208333 0.000000 0.166667 0.625000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TTT[AT]TTTATTTATTTATTTATTTATTTATTTATTTATTT[AT]TTT[AT]TTT[TA] -------------------------------------------------------------------------------- Time 353.93 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTAYTTTKB MEME-2 width = 12 sites = 159 llr = 1356 E-value = 3.2e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::5:2:321 pos.-specific C ::::::512:13 probability G :a::13:1::52 matrix T a:aa92568723 bits 2.3 2.0 * 1.8 **** 1.6 **** Relative 1.4 **** Entropy 1.1 ***** (12.3 bits) 0.9 ***** * ** 0.7 ***** * ** 0.5 ******* ** 0.2 ************ 0.0 ------------ Multilevel TGTTTATTTTGC consensus GCACATT sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr6:8939605-8940105 + 14 5.52e-07 GGGTGACTGA TGTTTACTTTGT TGATGGCCCC chr4:19823713-19824213 + 35 6.93e-07 ttataaaaca tgtttattttgg gaaaggacat chr2:100005014-100005514 - 69 6.93e-07 TTTACATGTT TGTTTATTTTGG AATTCAGTGA chr3:16482918-16483418 - 70 1.06e-06 TACTCTGAAG TGTTTGTTTTGC CTTTCCTTAA chr17:61335987-61336487 + 33 1.06e-06 GTTATTTGGC TGTTTGCTTTGG CAGCTCTTGA chr14:51581284-51581784 - 69 1.06e-06 CTCCACCATG TGTTTGTTTTGC TTTAAGTCTT chr5:136420522-136421022 + 30 1.06e-06 AGAAAGAGAG TGTTTGCTTTGG CTCAGGGCTG chr1:169942305-169942805 - 2 1.46e-06 AGTTTAATCT TGTTTTCTTTGC A chr10:10989646-10990146 - 57 1.46e-06 GTTACTTCAC TGTTTTCTTTGC ATGTCTCTGA chr10:121831742-12183224 - 36 2.40e-06 CTGTAATTTC TGTTTACTTAGG GATAAAGCTG chr10:12720331-12720831 - 56 3.40e-06 AATGAGTCTC TGTTTGCTTAGC TAAGATTAGA chr3:156161124-156161624 + 29 3.40e-06 CTTTACCACA TGTTTATTTTTC TTGTTTCACA chr6:129183828-129184328 + 66 3.40e-06 TTTTTGTTGT TGTTTATATTGC TTTTCCCAAG chr1:231037946-231038446 + 69 3.40e-06 CAAAGATGGC TGTTTATTTTTC TTGTGCTTCA chr16:15590842-15591342 - 53 4.51e-06 CTGTTTCAAG TGTTTATTCTGC CTCCGCTTGC chr8:71355233-71355733 + 44 4.51e-06 CTGATGCATG TGTTTACTCTGG CAAACTACTT chr17:48492589-48493089 + 20 4.51e-06 GCGGATTCAG TGTTTATTTAGG CTGAGAGCTG chr10:99519974-99520474 + 64 4.51e-06 AGGATAATGG TGTTTACTTTAC CGCGATAAAG chr1:229221437-229221937 - 7 5.98e-06 GGTTTTGCAG TGTTTACTTTCC AGTGAT chr5:88516295-88516795 - 68 5.98e-06 AAATTACAAG TGTTTACTCTGT ATCCATGAGT chr5:175385676-175386176 - 24 5.98e-06 AATGCACCAC TGTTTGTTTAGC CATTCACCTA chr1:175841774-175842274 + 27 5.98e-06 ACCATGGAGG TGTTTGCTCTGC TCTTAATGAG chr2:12303218-12303718 - 64 7.56e-06 ACCCTGGGAT TGTTTGCTTTTG TCTAGTAAAA chr10:72800366-72800866 - 83 7.56e-06 ACAGGA TGTTTGCTTTTG TTATCAGTGA chr4:119730134-119730634 - 10 7.56e-06 ACATTGTTTA TGTTTGCTTTTG CCTGACTAA chr11:20070419-20070919 + 34 7.56e-06 AACCAAGCTG TGTTTGTTTTTC TAGGGCAAAC chr1:24043447-24043947 + 57 7.56e-06 TGTGCtttct tgtttatttttt tttgagacag chr11:88320062-88320562 - 58 9.10e-06 AGTAAATTGC TGTTTTCTTAGC TAATTCTGGA chr10:126233697-12623419 - 85 9.10e-06 TGCC TGTTTATTTTCC CATCATACAC chr12:806375-806875 + 28 9.10e-06 CATCAGGCAA TGTTTATTTTGA TATGACGTAG chr7:2157574-2158074 + 27 9.10e-06 GCAGGAAGAG TGTTTATTTTCC AGAAGCCTCC chr5:127934854-127935354 + 68 9.10e-06 CCAGCTGAGG TGTTTGTTTAGG CTAATCCCAA chr1:212596155-212596655 + 35 9.10e-06 GTTTTCCAAT TGTTTACTTTAT AACAATAATA chr6:4320850-4321350 + 19 1.08e-05 TGTTTCTTAC TGTTTACATAGC AATGAAGATT chr6:11270217-11270717 - 62 1.08e-05 AGTGTCTGCT TGTTTATTTTAG GTAGATAAGT chr1:107767195-107767695 - 8 1.08e-05 CACATCTTCA TGTTTACTTTCT ACACCAC chr12:71626706-71627206 - 65 1.08e-05 TAAGTTACAG TGTTTTCTTTTC TGACTCATTT chr5:99900439-99900939 + 58 1.08e-05 atttgtgaat tgttttcttttc tactccataa chr1:159916142-159916642 + 18 1.25e-05 gcgaattcaa tgttttctctgc aatgacatca chr10:88181894-88182394 + 2 1.25e-05 A TGTTTATTTTAT GGGGCTCTCT chr5:90547962-90548462 + 53 1.25e-05 ATGAAGGATT TGTTTGCCTTGT CTCCTCCCAA chr5:119270066-119270566 - 34 1.51e-05 TGGAGTCATA TGTTTACACTGC AAAGTATAAT chr2:188573438-188573938 + 12 1.51e-05 GGGTTTTATG TGTTTGTTTTGA GCTCAGAGGA chr10:26524157-26524657 - 47 1.51e-05 AATTTGTTGT TGTTTTTTTTTC ATCATCAATC chr4:38150223-38150723 - 14 1.51e-05 AATTATGAAA TGTTTATTTTCT TAGATCAGCT chr1:3403704-3404204 + 89 1.75e-05 AGAGGGTCCG TGTTTTCTTTAC chr10:112793304-11279380 + 65 1.75e-05 CTCTTTTGTT TGTTTGTCTTGT GGAACATGTA chr10:75593192-75593692 + 77 1.75e-05 GAAATGTTGC TGTTTATTCAGC AATGCAATAA chr15:81950773-81951273 + 20 1.75e-05 ctggagcctc tgtttgcttatc tataaaacga chr2:109261151-109261651 + 29 1.75e-05 AAATTGTGTT TGTTTTCATTGT AATTACAGCA chr1:16120929-16121429 - 7 1.75e-05 ACTTAGCCTG TGTTTACTTATT TCATTC chr3:44995225-44995725 - 6 1.75e-05 ACACTCAAAA TGTTTACCTTTC CCTGA chr15:69143642-69144142 + 42 2.10e-05 ctgtgatagg tgtttgttttat aggcttgatc chr6:52243258-52243758 - 11 2.10e-05 AATCACCCAG TGTTGACTTTGG ACAGCTCCTA chr6:125050688-125051188 - 51 2.10e-05 ACACACACTT TGTTTACACTGG CGTCTATCAA chr9:95721050-95721550 - 7 2.10e-05 ATAAACCCTT TGTTTATGTTGC TGGTGA chr5:54302197-54302697 - 58 2.10e-05 CAGTGCTGAG TGTTTTCCTTGG ATCACCTAAT chr1:208747842-208748342 + 28 2.10e-05 TTAGACCGTT TGTTTTCTTTCC CTCAAATCAA chr15:77067292-77067792 - 74 2.10e-05 GCTTATCAAA TGTTTACCTAGG TTCCCTTGGG chr3:9194424-9194924 - 71 2.10e-05 TGGGTTCTAG TGTTGACTTTGG CACTATCTTG chr6:13006937-13007437 - 70 2.10e-05 CTATTAAGTG TGTTTACATTAC AATAAAATAA chr15:69591895-69592395 - 22 2.10e-05 CTTAATGGTT TGTTTGCTCAGC CTACTTCAAA chr10:50463970-50464470 - 12 2.52e-05 ATCTCTTGTT TGTTTTTATTGT GGTAAAAAAC chr6:167829440-167829940 + 38 2.52e-05 TTTCTTTTGT TGTTTTTTTTTT GGGTACAGTG chr3:71102096-71102596 - 18 2.52e-05 TTATTAAGTT TGTTTTCCTTGT CATATTGTAA chr10:12445537-12446037 + 18 2.52e-05 ATTGCTCATT TGTTTTTATTGT TAGTATAACT chr1:228902969-228903469 + 26 2.52e-05 ACCACTCCAC TGTTTATATTTG GTCATTTATT chr10:7433224-7433724 - 29 2.94e-05 AGGAATGGCT TGTTTACTTAAT CTCTCTTTTA chr6:128066839-128067339 + 87 2.94e-05 ACACGCATTC TGTTTATCCTGC AG chr14:91149463-91149963 - 14 2.94e-05 AGAGCACACG TGTTTGCTTATT TAGTACAGAG chr1:3419785-3420285 + 40 2.94e-05 ATGAGCTGTG TGTTTTTTCTGT AATGAGAGCC chr9:86731438-86731938 + 20 2.94e-05 ATTTCAACAT TGTTTATGTTGG GCTGAATTTA chr18:50629032-50629532 - 84 3.42e-05 ACTGT TGTTTGCTCAGT CTGGCTATAA chr8:108689368-108689868 + 86 3.42e-05 ACTGGAATGA TGTTGGCTTTGG ATT chr1:198837492-198837992 + 14 3.42e-05 TGTTCCTTCT TGTTTTTCTTGT CATAAAGAGT chr10:35890236-35890736 - 77 3.42e-05 TACTTTATAT TGTTTGTTCTTC ACTGAAGTTG chr17:71163452-71163952 - 9 3.42e-05 CACACGTTTA TGTTGATTTTGT GGTTTCTG chr1:38724121-38724621 - 44 3.42e-05 GCAATAAAGC TGTTTGCCTAGG AAGCTTCCTG chr20:46085114-46085614 + 23 3.86e-05 Tggagttcac tgtttatttaat aaaggagagg chr10:20958712-20959212 - 34 3.86e-05 GCTCTTCTCA TGTTTGTTTATT GAGGATTTGA chrX:136046983-136047483 - 56 3.86e-05 GTTAGGTTTC TGTTTGTTTATT TGAAAACATT chr8:71711444-71711944 - 4 4.34e-05 GTAGAACCAG TGTTTTCACTGC AAT chr5:38782988-38783488 - 53 4.34e-05 TTAAGAGAAC TGTTTGTGTTGG CAGTGCTTCA chr13:46674981-46675481 - 53 4.83e-05 TCTAACAGTG TGTTTGTTTTTA CAGCTGCCTG chr13:113493289-11349378 + 40 4.83e-05 ATTGCCTCAT TGTTTGTTTTTA AGGTGGTAAA chr1:229218491-229218991 + 15 4.83e-05 ctgtatagct tgttttcctttc caatttaaaa chr6:684067-684567 - 35 4.83e-05 ATGACCAGCT TGTTTTCTCAGG GAGGTTTATG chr17:43670017-43670517 + 36 5.37e-05 TTTCCCTCCC TGTTTACCCAGC AGTATTTTTT chr12:107380062-10738056 + 71 5.37e-05 TTTGTTTCTT TGTTTGCATTCT TTTCCTTCCA chrX:23944266-23944766 + 87 6.02e-05 TACTGATGTT TGTTTATACTTC AT chr7:42152439-42152939 - 87 6.02e-05 GC TGTTGACCTTGC TTGGGGACCA chr12:66751643-66752143 - 88 6.02e-05 T TGTTTTTATTTG AAATTGCAGC chr8:25998475-25998975 + 42 6.73e-05 CAGATAATGA TGTTTAATTTGT TATTGGCTGT chr14:36955972-36956472 + 16 6.73e-05 TGCATTTATG TGTTTTCTCTCC CCGAATACTG chr7:33669144-33669644 - 58 7.52e-05 GTGATAAATT TGTTGATCTTGC TCTAAAGGCT chr4:111883490-111883990 + 77 7.52e-05 GGTAAGACTC TGTTTGTTTTCA GTAGGGCTAA chr16:12120436-12120936 + 36 7.52e-05 TGTGTGTCTG TGTTTATGTTTG GGTCCCTGGG chr11:92868163-92868663 + 31 7.52e-05 ATCTATTTGC TGTTTTTACTGT CTCAGCAGTG chr12:51405731-51406231 - 87 7.52e-05 TG TGTTTGTCTTAT ATATCTCCAG chr12:54052075-54052575 - 78 8.31e-05 TAAAGTTAAC TGTTTATGTTTT ATTTATTAGA chr3:169526186-169526686 + 81 8.31e-05 ATAAACCACA TGTTTACTTAAA GAAGCCTG chr1:58779925-58780425 - 21 8.31e-05 GAGTCAGGGC TGTTTGCTCATT AGCAGTGTTC chr19:40920945-40921445 - 39 9.10e-05 AGTGACTCAG TGTTTACCCTGA GCCCAGAAGT chr5:74632108-74632608 + 48 9.10e-05 TCAGAGCATT TGTTTATTCAAG ATTACTGAGA chr1:59214665-59215165 - 9 9.10e-05 CATTTCTGTG TGTTTGTATAAC ATGAACTG chr1:201721118-201721618 - 70 9.10e-05 GAGGAGTGAC TGTTTACATTAA ATTACTGGGG chr6:1667161-1667661 - 85 9.10e-05 ATGG TGTTTATACTGA GCTTAAATTG chr22:24727032-24727532 + 46 9.10e-05 tatatggcTC TGTTGACTTTAT GATAAAAGTT chr7:22548262-22548762 + 33 9.10e-05 ttgaaaactg tgtttgcataag agatttaatg chr11:66789312-66789812 - 27 9.10e-05 TGCTCCAGAT TGTTTACCCTCC ATTCTCCTAA chr3:188272547-188273047 - 53 9.10e-05 AAATTATTAC TGTTTATATAAT GGTCTTTCCT chr3:172140650-172141150 + 3 9.10e-05 ta tgtttattctta tatttacatA chr8:109611165-109611665 - 72 9.89e-05 GTGGACTTAG TGTTTATCTTTA TGGCAGGGTT chr18:23684577-23685077 - 43 9.89e-05 ATTGACTTCA TGTTGTCATTGC AGTTTAAAAA chr10:126249961-12625046 - 28 9.89e-05 CTTGAGTCCC TGTTTATATACT CTGGGATTAT chr1:220918448-220918948 - 11 9.89e-05 CAAGGTAACA TGTTTATATACT CCATTGGATG chr13:37046921-37047421 - 47 1.07e-04 AGCAGTAACC TGTTTTCTCATG ATGATTTAAA chr12:106074939-10607543 + 1 1.07e-04 . TGTTTATGTTAT GGCCCACTCC chr19:28520336-28520836 - 1 1.15e-04 ATGACTTGTG TGTTGATTTATC chr11:115452199-11545269 + 62 1.15e-04 TTAAGTGAAT TGTTGACATAGG CATTAAAAGT chr4:110904623-110905123 + 26 1.24e-04 AGTTGTCCTT TGTTGGTTTTAG GAACAATCAA chr7:83267138-83267638 + 8 1.24e-04 TTTACAA TGTTTTATTTGT TAAACATTTT chr10:121819030-12181953 - 35 1.24e-04 TTCTTAAAGC TGTTTTCATTTA GAGTAAAAGG chr13:99677542-99678042 + 42 1.24e-04 TAATGGCTAC TGTTTTATTTGT ACATAAAAAG chr14:99821632-99822132 + 84 1.34e-04 ATAGCTAGAG TGTTTGTTCACT CCCTA chr20:5582150-5582650 - 67 1.34e-04 TAGGTATATA TGTTTATGTATG GTAGAAATGA chr21:33136827-33137327 - 80 1.45e-04 CGTTAAACA TGTTTTCTTAAA CAGTGACTGA chr3:61634650-61635150 + 55 1.45e-04 GATTTCAAGC TGTTGATATAGT TCAGACCTTG chr20:45017806-45018306 - 69 1.45e-04 TTTTGGGTTT TGTTTTTGTTAC CAGGCACCTA chr13:87123853-87124353 + 32 1.56e-04 tgagagctga tgtttttatacg gtgtcaggtc chr3:171801819-171802319 - 73 1.56e-04 GGGATTCATT TGTTTTCCTAAT TGTTCTTTTC chr17:68381072-68381572 + 29 1.56e-04 ATCATGGTTT TGTTGATATTTT GGTTGCTGTG chr4:8044644-8045144 - 30 1.56e-04 ACACAGCTGT TGTTTATAGTGG TGCAGACACG chr2:48732937-48733437 + 71 1.56e-04 TTTTGGAGAG TGTTTACATAAA AGCTTCAGCA chr10:33271916-33272416 + 25 1.56e-04 GCATGACTTA TGTTTACATAAA GTCTCAGGAG chr1:85297832-85298332 + 59 1.56e-04 CGAAACTGTG TGTTGACTTAAT GGTATGACTC chr1:68217000-68217500 - 1 1.67e-04 GAAAAGGGTT TGTTTATAGTGT chr13:106096584-10609708 + 23 1.67e-04 TGGTGACACA TATTTACTTTGT GGTCAGATGT chr14:68140202-68140702 - 62 1.67e-04 TAACATTTAC TGTTTACTGTAG CTGTGGTTGT chr10:44752840-44753340 + 34 1.79e-04 TTTTAATAGT TGTTTATACAAT CTGCCCAGCC chr1:233241765-233242265 - 8 1.79e-04 AAAGCCACAA TGTTTAATTATC TACCTGG chr15:70507800-70508300 + 34 1.79e-04 tagggtgtct tgtttactcaca gtggccttag chr8:17540093-17540593 + 56 1.79e-04 TTCTGACGTA TGTTTTTCTAAT TACTCAAAAG chr6:16754787-16755287 + 56 1.79e-04 GTTGGGAGAG TGTTTGCCTATA TGACAATGTG chr6:43321903-43322403 - 66 1.90e-04 GTTGTGGTTT TGTTTTTATTCA TCTCAAAGTG chr6:54879150-54879650 - 2 1.90e-04 GATAATCTCC TGTTTTATTAGG T chr1:234700146-234700646 + 78 1.90e-04 TATTTATTAC TGTTATTTTTGC CCTCCCTCAC chr1:168801355-168801855 + 63 2.01e-04 tatgaAGCAA TGTTTATTGTAT TTAACATTTT chr8:71496063-71496563 - 18 2.01e-04 ATGACAATGG TGTTAGCTTAGC TGTACAGGCT chr2:175805423-175805923 - 12 2.01e-04 TGCATTAAAT TGTTTAATCTTC AGAACAACCC chr4:20272369-20272869 + 61 2.28e-04 TGGTTATAAA TATTTGTTTTGT GGTTTTCGGT chr1:145740173-145740673 + 58 2.42e-04 CTAAAGAGTT TATTTACTCTGC TTATCTCGAG chr3:77191644-77192144 - 62 2.59e-04 TTATTTATAA TGTTTATCGTTC TCTCGCCAGT chr5:72246989-72247489 - 26 2.75e-04 CCGTAAGCTG TGTTTTTATAAA CAGTATAATG chr6:91299548-91300048 - 61 2.91e-04 GTGGCTATTA TATTTATATTGG TTTAAACTGT chr11:92331201-92331701 + 89 2.91e-04 AGGTGTGGAG TGTTATTTTAGC chr18:42850138-42850638 + 34 3.09e-04 TGCTTGAACA TGTTTATGCACG GTTAATGGAT chr5:69517658-69518158 + 80 3.44e-04 TTTCTGGGTG TGTTAGTTTTCG TTGGCAGTT chr4:74202024-74202524 - 62 5.05e-04 CTAACTAGCT TGTTTACTCGTG TGGTCCTAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:8939605-8940105 5.5e-07 13_[+2]_75 chr4:19823713-19824213 6.9e-07 34_[+2]_54 chr2:100005014-100005514 6.9e-07 68_[-2]_20 chr3:16482918-16483418 1.1e-06 69_[-2]_19 chr17:61335987-61336487 1.1e-06 32_[+2]_56 chr14:51581284-51581784 1.1e-06 68_[-2]_20 chr5:136420522-136421022 1.1e-06 29_[+2]_59 chr1:169942305-169942805 1.5e-06 1_[-2]_87 chr10:10989646-10990146 1.5e-06 56_[-2]_32 chr10:121831742-12183224 2.4e-06 35_[-2]_53 chr10:12720331-12720831 3.4e-06 55_[-2]_33 chr3:156161124-156161624 3.4e-06 28_[+2]_60 chr6:129183828-129184328 3.4e-06 65_[+2]_23 chr1:231037946-231038446 3.4e-06 68_[+2]_20 chr16:15590842-15591342 4.5e-06 52_[-2]_36 chr8:71355233-71355733 4.5e-06 43_[+2]_45 chr17:48492589-48493089 4.5e-06 19_[+2]_69 chr10:99519974-99520474 4.5e-06 63_[+2]_25 chr1:229221437-229221937 6e-06 6_[-2]_82 chr5:88516295-88516795 6e-06 67_[-2]_21 chr5:175385676-175386176 6e-06 23_[-2]_65 chr1:175841774-175842274 6e-06 26_[+2]_62 chr2:12303218-12303718 7.6e-06 63_[-2]_25 chr10:72800366-72800866 7.6e-06 82_[-2]_6 chr4:119730134-119730634 7.6e-06 9_[-2]_79 chr11:20070419-20070919 7.6e-06 33_[+2]_55 chr1:24043447-24043947 7.6e-06 56_[+2]_32 chr11:88320062-88320562 9.1e-06 57_[-2]_31 chr10:126233697-12623419 9.1e-06 84_[-2]_4 chr12:806375-806875 9.1e-06 27_[+2]_61 chr7:2157574-2158074 9.1e-06 26_[+2]_62 chr5:127934854-127935354 9.1e-06 67_[+2]_21 chr1:212596155-212596655 9.1e-06 34_[+2]_54 chr6:4320850-4321350 1.1e-05 18_[+2]_70 chr6:11270217-11270717 1.1e-05 61_[-2]_27 chr1:107767195-107767695 1.1e-05 7_[-2]_81 chr12:71626706-71627206 1.1e-05 64_[-2]_24 chr5:99900439-99900939 1.1e-05 57_[+2]_31 chr1:159916142-159916642 1.2e-05 17_[+2]_71 chr10:88181894-88182394 1.2e-05 1_[+2]_87 chr5:90547962-90548462 1.2e-05 52_[+2]_36 chr5:119270066-119270566 1.5e-05 33_[-2]_55 chr2:188573438-188573938 1.5e-05 11_[+2]_77 chr10:26524157-26524657 1.5e-05 46_[-2]_42 chr4:38150223-38150723 1.5e-05 13_[-2]_75 chr1:3403704-3404204 1.7e-05 88_[+2] chr10:112793304-11279380 1.7e-05 64_[+2]_24 chr10:75593192-75593692 1.7e-05 76_[+2]_12 chr15:81950773-81951273 1.7e-05 19_[+2]_69 chr2:109261151-109261651 1.7e-05 28_[+2]_60 chr1:16120929-16121429 1.7e-05 6_[-2]_82 chr3:44995225-44995725 1.7e-05 5_[-2]_83 chr15:69143642-69144142 2.1e-05 41_[+2]_47 chr6:52243258-52243758 2.1e-05 10_[-2]_78 chr6:125050688-125051188 2.1e-05 50_[-2]_38 chr9:95721050-95721550 2.1e-05 6_[-2]_82 chr5:54302197-54302697 2.1e-05 57_[-2]_31 chr1:208747842-208748342 2.1e-05 27_[+2]_61 chr15:77067292-77067792 2.1e-05 73_[-2]_15 chr3:9194424-9194924 2.1e-05 70_[-2]_18 chr6:13006937-13007437 2.1e-05 69_[-2]_19 chr15:69591895-69592395 2.1e-05 21_[-2]_67 chr10:50463970-50464470 2.5e-05 11_[-2]_77 chr6:167829440-167829940 2.5e-05 37_[+2]_51 chr3:71102096-71102596 2.5e-05 17_[-2]_71 chr10:12445537-12446037 2.5e-05 17_[+2]_71 chr1:228902969-228903469 2.5e-05 25_[+2]_63 chr10:7433224-7433724 2.9e-05 28_[-2]_60 chr6:128066839-128067339 2.9e-05 86_[+2]_2 chr14:91149463-91149963 2.9e-05 13_[-2]_75 chr1:3419785-3420285 2.9e-05 39_[+2]_49 chr9:86731438-86731938 2.9e-05 19_[+2]_69 chr18:50629032-50629532 3.4e-05 83_[-2]_5 chr8:108689368-108689868 3.4e-05 85_[+2]_3 chr1:198837492-198837992 3.4e-05 13_[+2]_75 chr10:35890236-35890736 3.4e-05 76_[-2]_12 chr17:71163452-71163952 3.4e-05 8_[-2]_80 chr1:38724121-38724621 3.4e-05 43_[-2]_45 chr20:46085114-46085614 3.9e-05 22_[+2]_66 chr10:20958712-20959212 3.9e-05 33_[-2]_55 chrX:136046983-136047483 3.9e-05 55_[-2]_33 chr8:71711444-71711944 4.3e-05 3_[-2]_85 chr5:38782988-38783488 4.3e-05 52_[-2]_36 chr13:46674981-46675481 4.8e-05 52_[-2]_36 chr13:113493289-11349378 4.8e-05 39_[+2]_49 chr1:229218491-229218991 4.8e-05 14_[+2]_74 chr6:684067-684567 4.8e-05 34_[-2]_54 chr17:43670017-43670517 5.4e-05 35_[+2]_53 chr12:107380062-10738056 5.4e-05 70_[+2]_18 chrX:23944266-23944766 6e-05 86_[+2]_2 chr7:42152439-42152939 6e-05 86_[-2]_2 chr12:66751643-66752143 6e-05 87_[-2]_1 chr8:25998475-25998975 6.7e-05 41_[+2]_47 chr14:36955972-36956472 6.7e-05 15_[+2]_73 chr7:33669144-33669644 7.5e-05 57_[-2]_31 chr4:111883490-111883990 7.5e-05 76_[+2]_12 chr16:12120436-12120936 7.5e-05 35_[+2]_53 chr11:92868163-92868663 7.5e-05 30_[+2]_58 chr12:51405731-51406231 7.5e-05 86_[-2]_2 chr12:54052075-54052575 8.3e-05 77_[-2]_11 chr3:169526186-169526686 8.3e-05 80_[+2]_8 chr1:58779925-58780425 8.3e-05 20_[-2]_68 chr19:40920945-40921445 9.1e-05 38_[-2]_50 chr5:74632108-74632608 9.1e-05 47_[+2]_41 chr1:59214665-59215165 9.1e-05 8_[-2]_80 chr1:201721118-201721618 9.1e-05 69_[-2]_19 chr6:1667161-1667661 9.1e-05 84_[-2]_4 chr22:24727032-24727532 9.1e-05 45_[+2]_43 chr7:22548262-22548762 9.1e-05 32_[+2]_56 chr11:66789312-66789812 9.1e-05 26_[-2]_62 chr3:188272547-188273047 9.1e-05 52_[-2]_36 chr3:172140650-172141150 9.1e-05 2_[+2]_86 chr8:109611165-109611665 9.9e-05 71_[-2]_17 chr18:23684577-23685077 9.9e-05 42_[-2]_46 chr10:126249961-12625046 9.9e-05 27_[-2]_61 chr1:220918448-220918948 9.9e-05 10_[-2]_78 chr13:37046921-37047421 0.00011 46_[-2]_42 chr12:106074939-10607543 0.00011 [+2]_88 chr19:28520336-28520836 0.00012 [-2]_88 chr11:115452199-11545269 0.00012 61_[+2]_27 chr4:110904623-110905123 0.00012 25_[+2]_63 chr7:83267138-83267638 0.00012 7_[+2]_81 chr10:121819030-12181953 0.00012 34_[-2]_54 chr13:99677542-99678042 0.00012 41_[+2]_47 chr14:99821632-99822132 0.00013 83_[+2]_5 chr20:5582150-5582650 0.00013 66_[-2]_22 chr21:33136827-33137327 0.00015 79_[-2]_9 chr3:61634650-61635150 0.00015 54_[+2]_34 chr20:45017806-45018306 0.00015 68_[-2]_20 chr13:87123853-87124353 0.00016 31_[+2]_57 chr3:171801819-171802319 0.00016 72_[-2]_16 chr17:68381072-68381572 0.00016 28_[+2]_60 chr4:8044644-8045144 0.00016 29_[-2]_59 chr2:48732937-48733437 0.00016 70_[+2]_18 chr10:33271916-33272416 0.00016 24_[+2]_64 chr1:85297832-85298332 0.00016 58_[+2]_30 chr1:68217000-68217500 0.00017 [-2]_88 chr13:106096584-10609708 0.00017 22_[+2]_66 chr14:68140202-68140702 0.00017 61_[-2]_27 chr10:44752840-44753340 0.00018 33_[+2]_55 chr1:233241765-233242265 0.00018 7_[-2]_81 chr15:70507800-70508300 0.00018 33_[+2]_55 chr8:17540093-17540593 0.00018 55_[+2]_33 chr6:16754787-16755287 0.00018 55_[+2]_33 chr6:43321903-43322403 0.00019 65_[-2]_23 chr6:54879150-54879650 0.00019 1_[-2]_87 chr1:234700146-234700646 0.00019 77_[+2]_11 chr1:168801355-168801855 0.0002 62_[+2]_26 chr8:71496063-71496563 0.0002 17_[-2]_71 chr2:175805423-175805923 0.0002 11_[-2]_77 chr4:20272369-20272869 0.00023 60_[+2]_28 chr1:145740173-145740673 0.00024 57_[+2]_31 chr3:77191644-77192144 0.00026 61_[-2]_27 chr5:72246989-72247489 0.00027 25_[-2]_63 chr6:91299548-91300048 0.00029 60_[-2]_28 chr11:92331201-92331701 0.00029 88_[+2] chr18:42850138-42850638 0.00031 33_[+2]_55 chr5:69517658-69518158 0.00034 79_[+2]_9 chr4:74202024-74202524 0.0005 61_[-2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTAYTTTKB width=12 seqs=159 chr6:8939605-8940105 ( 14) TGTTTACTTTGT 1 chr4:19823713-19824213 ( 35) TGTTTATTTTGG 1 chr2:100005014-100005514 ( 69) TGTTTATTTTGG 1 chr3:16482918-16483418 ( 70) TGTTTGTTTTGC 1 chr17:61335987-61336487 ( 33) TGTTTGCTTTGG 1 chr14:51581284-51581784 ( 69) TGTTTGTTTTGC 1 chr5:136420522-136421022 ( 30) TGTTTGCTTTGG 1 chr1:169942305-169942805 ( 2) TGTTTTCTTTGC 1 chr10:10989646-10990146 ( 57) TGTTTTCTTTGC 1 chr10:121831742-12183224 ( 36) TGTTTACTTAGG 1 chr10:12720331-12720831 ( 56) TGTTTGCTTAGC 1 chr3:156161124-156161624 ( 29) TGTTTATTTTTC 1 chr6:129183828-129184328 ( 66) TGTTTATATTGC 1 chr1:231037946-231038446 ( 69) TGTTTATTTTTC 1 chr16:15590842-15591342 ( 53) TGTTTATTCTGC 1 chr8:71355233-71355733 ( 44) TGTTTACTCTGG 1 chr17:48492589-48493089 ( 20) TGTTTATTTAGG 1 chr10:99519974-99520474 ( 64) TGTTTACTTTAC 1 chr1:229221437-229221937 ( 7) TGTTTACTTTCC 1 chr5:88516295-88516795 ( 68) TGTTTACTCTGT 1 chr5:175385676-175386176 ( 24) TGTTTGTTTAGC 1 chr1:175841774-175842274 ( 27) TGTTTGCTCTGC 1 chr2:12303218-12303718 ( 64) TGTTTGCTTTTG 1 chr10:72800366-72800866 ( 83) TGTTTGCTTTTG 1 chr4:119730134-119730634 ( 10) TGTTTGCTTTTG 1 chr11:20070419-20070919 ( 34) TGTTTGTTTTTC 1 chr1:24043447-24043947 ( 57) TGTTTATTTTTT 1 chr11:88320062-88320562 ( 58) TGTTTTCTTAGC 1 chr10:126233697-12623419 ( 85) TGTTTATTTTCC 1 chr12:806375-806875 ( 28) TGTTTATTTTGA 1 chr7:2157574-2158074 ( 27) TGTTTATTTTCC 1 chr5:127934854-127935354 ( 68) TGTTTGTTTAGG 1 chr1:212596155-212596655 ( 35) TGTTTACTTTAT 1 chr6:4320850-4321350 ( 19) TGTTTACATAGC 1 chr6:11270217-11270717 ( 62) TGTTTATTTTAG 1 chr1:107767195-107767695 ( 8) TGTTTACTTTCT 1 chr12:71626706-71627206 ( 65) TGTTTTCTTTTC 1 chr5:99900439-99900939 ( 58) TGTTTTCTTTTC 1 chr1:159916142-159916642 ( 18) TGTTTTCTCTGC 1 chr10:88181894-88182394 ( 2) TGTTTATTTTAT 1 chr5:90547962-90548462 ( 53) TGTTTGCCTTGT 1 chr5:119270066-119270566 ( 34) TGTTTACACTGC 1 chr2:188573438-188573938 ( 12) TGTTTGTTTTGA 1 chr10:26524157-26524657 ( 47) TGTTTTTTTTTC 1 chr4:38150223-38150723 ( 14) TGTTTATTTTCT 1 chr1:3403704-3404204 ( 89) TGTTTTCTTTAC 1 chr10:112793304-11279380 ( 65) TGTTTGTCTTGT 1 chr10:75593192-75593692 ( 77) TGTTTATTCAGC 1 chr15:81950773-81951273 ( 20) TGTTTGCTTATC 1 chr2:109261151-109261651 ( 29) TGTTTTCATTGT 1 chr1:16120929-16121429 ( 7) TGTTTACTTATT 1 chr3:44995225-44995725 ( 6) TGTTTACCTTTC 1 chr15:69143642-69144142 ( 42) TGTTTGTTTTAT 1 chr6:52243258-52243758 ( 11) TGTTGACTTTGG 1 chr6:125050688-125051188 ( 51) TGTTTACACTGG 1 chr9:95721050-95721550 ( 7) TGTTTATGTTGC 1 chr5:54302197-54302697 ( 58) TGTTTTCCTTGG 1 chr1:208747842-208748342 ( 28) TGTTTTCTTTCC 1 chr15:77067292-77067792 ( 74) TGTTTACCTAGG 1 chr3:9194424-9194924 ( 71) TGTTGACTTTGG 1 chr6:13006937-13007437 ( 70) TGTTTACATTAC 1 chr15:69591895-69592395 ( 22) TGTTTGCTCAGC 1 chr10:50463970-50464470 ( 12) TGTTTTTATTGT 1 chr6:167829440-167829940 ( 38) TGTTTTTTTTTT 1 chr3:71102096-71102596 ( 18) TGTTTTCCTTGT 1 chr10:12445537-12446037 ( 18) TGTTTTTATTGT 1 chr1:228902969-228903469 ( 26) TGTTTATATTTG 1 chr10:7433224-7433724 ( 29) TGTTTACTTAAT 1 chr6:128066839-128067339 ( 87) TGTTTATCCTGC 1 chr14:91149463-91149963 ( 14) TGTTTGCTTATT 1 chr1:3419785-3420285 ( 40) TGTTTTTTCTGT 1 chr9:86731438-86731938 ( 20) TGTTTATGTTGG 1 chr18:50629032-50629532 ( 84) TGTTTGCTCAGT 1 chr8:108689368-108689868 ( 86) TGTTGGCTTTGG 1 chr1:198837492-198837992 ( 14) TGTTTTTCTTGT 1 chr10:35890236-35890736 ( 77) TGTTTGTTCTTC 1 chr17:71163452-71163952 ( 9) TGTTGATTTTGT 1 chr1:38724121-38724621 ( 44) TGTTTGCCTAGG 1 chr20:46085114-46085614 ( 23) TGTTTATTTAAT 1 chr10:20958712-20959212 ( 34) TGTTTGTTTATT 1 chrX:136046983-136047483 ( 56) TGTTTGTTTATT 1 chr8:71711444-71711944 ( 4) TGTTTTCACTGC 1 chr5:38782988-38783488 ( 53) TGTTTGTGTTGG 1 chr13:46674981-46675481 ( 53) TGTTTGTTTTTA 1 chr13:113493289-11349378 ( 40) TGTTTGTTTTTA 1 chr1:229218491-229218991 ( 15) TGTTTTCCTTTC 1 chr6:684067-684567 ( 35) TGTTTTCTCAGG 1 chr17:43670017-43670517 ( 36) TGTTTACCCAGC 1 chr12:107380062-10738056 ( 71) TGTTTGCATTCT 1 chrX:23944266-23944766 ( 87) TGTTTATACTTC 1 chr7:42152439-42152939 ( 87) TGTTGACCTTGC 1 chr12:66751643-66752143 ( 88) TGTTTTTATTTG 1 chr8:25998475-25998975 ( 42) TGTTTAATTTGT 1 chr14:36955972-36956472 ( 16) TGTTTTCTCTCC 1 chr7:33669144-33669644 ( 58) TGTTGATCTTGC 1 chr4:111883490-111883990 ( 77) TGTTTGTTTTCA 1 chr16:12120436-12120936 ( 36) TGTTTATGTTTG 1 chr11:92868163-92868663 ( 31) TGTTTTTACTGT 1 chr12:51405731-51406231 ( 87) TGTTTGTCTTAT 1 chr12:54052075-54052575 ( 78) TGTTTATGTTTT 1 chr3:169526186-169526686 ( 81) TGTTTACTTAAA 1 chr1:58779925-58780425 ( 21) TGTTTGCTCATT 1 chr19:40920945-40921445 ( 39) TGTTTACCCTGA 1 chr5:74632108-74632608 ( 48) TGTTTATTCAAG 1 chr1:59214665-59215165 ( 9) TGTTTGTATAAC 1 chr1:201721118-201721618 ( 70) TGTTTACATTAA 1 chr6:1667161-1667661 ( 85) TGTTTATACTGA 1 chr22:24727032-24727532 ( 46) TGTTGACTTTAT 1 chr7:22548262-22548762 ( 33) TGTTTGCATAAG 1 chr11:66789312-66789812 ( 27) TGTTTACCCTCC 1 chr3:188272547-188273047 ( 53) TGTTTATATAAT 1 chr3:172140650-172141150 ( 3) TGTTTATTCTTA 1 chr8:109611165-109611665 ( 72) TGTTTATCTTTA 1 chr18:23684577-23685077 ( 43) TGTTGTCATTGC 1 chr10:126249961-12625046 ( 28) TGTTTATATACT 1 chr1:220918448-220918948 ( 11) TGTTTATATACT 1 chr13:37046921-37047421 ( 47) TGTTTTCTCATG 1 chr12:106074939-10607543 ( 1) TGTTTATGTTAT 1 chr19:28520336-28520836 ( 1) TGTTGATTTATC 1 chr11:115452199-11545269 ( 62) TGTTGACATAGG 1 chr4:110904623-110905123 ( 26) TGTTGGTTTTAG 1 chr7:83267138-83267638 ( 8) TGTTTTATTTGT 1 chr10:121819030-12181953 ( 35) TGTTTTCATTTA 1 chr13:99677542-99678042 ( 42) TGTTTTATTTGT 1 chr14:99821632-99822132 ( 84) TGTTTGTTCACT 1 chr20:5582150-5582650 ( 67) TGTTTATGTATG 1 chr21:33136827-33137327 ( 80) TGTTTTCTTAAA 1 chr3:61634650-61635150 ( 55) TGTTGATATAGT 1 chr20:45017806-45018306 ( 69) TGTTTTTGTTAC 1 chr13:87123853-87124353 ( 32) TGTTTTTATACG 1 chr3:171801819-171802319 ( 73) TGTTTTCCTAAT 1 chr17:68381072-68381572 ( 29) TGTTGATATTTT 1 chr4:8044644-8045144 ( 30) TGTTTATAGTGG 1 chr2:48732937-48733437 ( 71) TGTTTACATAAA 1 chr10:33271916-33272416 ( 25) TGTTTACATAAA 1 chr1:85297832-85298332 ( 59) TGTTGACTTAAT 1 chr1:68217000-68217500 ( 1) TGTTTATAGTGT 1 chr13:106096584-10609708 ( 23) TATTTACTTTGT 1 chr14:68140202-68140702 ( 62) TGTTTACTGTAG 1 chr10:44752840-44753340 ( 34) TGTTTATACAAT 1 chr1:233241765-233242265 ( 8) TGTTTAATTATC 1 chr15:70507800-70508300 ( 34) TGTTTACTCACA 1 chr8:17540093-17540593 ( 56) TGTTTTTCTAAT 1 chr6:16754787-16755287 ( 56) TGTTTGCCTATA 1 chr6:43321903-43322403 ( 66) TGTTTTTATTCA 1 chr6:54879150-54879650 ( 2) TGTTTTATTAGG 1 chr1:234700146-234700646 ( 78) TGTTATTTTTGC 1 chr1:168801355-168801855 ( 63) TGTTTATTGTAT 1 chr8:71496063-71496563 ( 18) TGTTAGCTTAGC 1 chr2:175805423-175805923 ( 12) TGTTTAATCTTC 1 chr4:20272369-20272869 ( 61) TATTTGTTTTGT 1 chr1:145740173-145740673 ( 58) TATTTACTCTGC 1 chr3:77191644-77192144 ( 62) TGTTTATCGTTC 1 chr5:72246989-72247489 ( 26) TGTTTTTATAAA 1 chr6:91299548-91300048 ( 61) TATTTATATTGG 1 chr11:92331201-92331701 ( 89) TGTTATTTTAGC 1 chr18:42850138-42850638 ( 34) TGTTTATGCACG 1 chr5:69517658-69518158 ( 80) TGTTAGTTTTCG 1 chr4:74202024-74202524 ( 62) TGTTTACTCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53311 bayes= 9.32486 E= 3.2e-046 -1396 -1396 -1396 177 -354 -1396 224 -1396 -1396 -1396 -1396 177 -1396 -1396 -1396 177 -354 -1396 -123 160 80 -1396 28 -29 -296 115 -1396 78 -41 -65 -187 101 -1396 1 -272 138 13 -1396 -504 120 -64 -87 113 -26 -129 66 25 7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 159 E= 3.2e-046 0.000000 0.000000 0.000000 1.000000 0.025157 0.000000 0.974843 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.025157 0.000000 0.088050 0.886792 0.509434 0.000000 0.251572 0.238994 0.037736 0.459119 0.000000 0.503145 0.220126 0.132075 0.056604 0.591195 0.000000 0.207547 0.031447 0.761006 0.320755 0.000000 0.006289 0.672956 0.188679 0.113208 0.452830 0.245283 0.119497 0.327044 0.245283 0.308176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTAYTTTKB MEME-2 regular expression -------------------------------------------------------------------------------- TGTTT[AGT][TC][TA][TC][TA][GT][CTG] -------------------------------------------------------------------------------- Time 661.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGCTGTG MEME-3 width = 9 sites = 52 llr = 539 E-value = 1.2e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::::1:2: pos.-specific C 9a1:a:::: probability G :::a:1a38 matrix T ::9::8:52 bits 2.3 * ** * 2.0 * ** * 1.8 * ** * 1.6 ** ** * Relative 1.4 ***** * * Entropy 1.1 ******* * (14.9 bits) 0.9 ******* * 0.7 ******* * 0.5 ********* 0.2 ********* 0.0 --------- Multilevel CCTGCTGTG consensus GT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr17:3890061-3890561 + 10 1.98e-06 TTGACGACT CCTGCTGTG AGGACGCCCG chr9:135329983-135330483 + 83 1.98e-06 AGTGTGCAGC CCTGCTGTG AAAATTACT chr6:128066839-128067339 + 66 1.98e-06 GTTTTATTAG CCTGCTGTG GAACACGCAT chr10:72228276-72228776 + 90 1.98e-06 TGTATTGCTA CCTGCTGTG TT chr9:111961498-111961998 + 43 1.98e-06 tcattgagca cctgctgtg tcttggcact chr22:24026697-24027197 + 25 1.98e-06 acaaacagac cctgctgtg atgtttattg chr8:30254801-30255301 - 28 1.98e-06 TTGTTGAGAT CCTGCTGTG CTTCAGACAA chr3:186319893-186320393 - 7 1.98e-06 AGAGCACTTC CCTGCTGTG CATATT chr18:395716-396216 + 17 1.98e-06 CATGTTTATT CCTGCTGTG GACCCAGCCA chr2:206230212-206230712 - 35 1.98e-06 AGCAGGGATC CCTGCTGTG AACCTGCTGC chr12:89769185-89769685 + 14 1.98e-06 atgatgaaat cctgctgtg cgcaactaac chr4:23818163-23818663 + 51 1.98e-06 GTCAAAAGAG CCTGCTGTG CAGAGCAACA chr4:110904623-110905123 - 54 3.38e-06 TCTACAATCT CCTGCTGGG TTTCATTTGA chr8:29126517-29127017 + 34 3.38e-06 CAATGCTCTC CCTGCTGGG TTTATAGTCC chr7:81299211-81299711 + 25 3.38e-06 ATAATAAATC CCTGCTGGG CTGTACTGTG chr16:22232694-22233194 - 68 3.38e-06 ACACCCAATA CCTGCTGGG TGTGTTCCTT chr9:16953996-16954496 + 21 3.38e-06 TGTTTATAGC CCTGCTGGG CTCACTTGTT chr19:28596479-28596979 + 60 3.38e-06 AGAGCAGGCA CCTGCTGGG GCCCTGAAAT chr17:27915608-27916108 + 61 3.38e-06 TGACGACACC CCTGCTGGG TCCAGCCTCA chr2:60633567-60634067 - 36 5.36e-06 CACTTTCTCT CCTGCTGAG AAATTAACAC chr5:136420522-136421022 + 77 5.36e-06 CTCTGTCCCT CCTGCTGAG AGCTTCCCCA chr6:54879150-54879650 + 27 5.36e-06 GATTATCTAC CCTGCTGAG AAGCAGAACC chr1:59261502-59262002 - 89 5.36e-06 AAT CCTGCTGAG TTTCCAACAG chr4:80307274-80307774 + 58 8.16e-06 ACCTTGCTTC CCTGCTGTT CCTGACAGCA chr4:53943648-53944148 + 42 8.16e-06 GCCTTTCCTT CCTGCTGTT TAATAATGCC chr13:21043940-21044440 - 64 8.16e-06 TGAAATGAAT CCTGCTGTT TTATAGAGGG chrX:12240417-12240917 - 86 8.16e-06 GACACC CCTGCTGTT TTAATCACAT chr14:96888511-96889011 + 60 8.16e-06 CCCAAGCTCT CCTGCTGTT TCTAATCTGT chr8:50056573-50057073 - 52 8.16e-06 AGCCCAGTGT CCTGCTGTT CCAGCAATCC chr4:111883490-111883990 + 22 1.15e-05 CTGAGCCTCC CCCGCTGTG TCAGGATAAA chr10:7433224-7433724 + 48 1.15e-05 ACAAGCCATT CCTGCTGGT AAAATAATTG chr4:185914645-185915145 + 73 1.15e-05 TCGTTTGATC CCTGCTGGT GGGAGAAAGC chr5:59317174-59317674 - 59 1.15e-05 GTTAGGGAAG CCTGCTGGT GTCCTGCCTG chr6:21264311-21264811 + 37 1.29e-05 ATTTAAGATC CCTGCGGTG TGAAGGAAGT chr18:49655995-49656495 - 35 1.29e-05 AGCCATCAAG CCTGCGGTG CAATATCCCT chr11:123213185-12321368 + 92 1.29e-05 taaaaaactt cctgcggtg chr18:59484756-59485256 + 56 1.57e-05 AACTACAAAC ACTGCTGTG TGGTTTTTAT chr7:105024702-105025202 - 63 1.57e-05 CCCAATTTGT ACTGCTGTG ATTTTAATTC chr15:36925631-36926131 + 37 1.57e-05 AACAAACAAT ACTGCTGTG AAATTGGTTT chr6:123841208-123841708 - 90 2.25e-05 TC CCTGCAGTG ATAAGGGCAG chr6:138088174-138088674 - 63 2.25e-05 GAAATGGAAT CCTGCTGAT TTAAATGGCA chr1:38724121-38724621 - 29 2.25e-05 TAGGAAGCTT CCTGCAGTG TCAGAGCTGA chr20:20215869-20216369 - 10 2.45e-05 TGTTTGCATG ACTGCTGGG GCTATAAAA chr8:37359521-37360021 - 11 2.73e-05 ATTACTCCAG CCCGCTGAG GTCACCTTCC chr1:87718279-87718779 - 39 2.73e-05 TAGATAAAAA CCTGCAGGG TGTTTCTGTA chr13:112213419-11221391 - 57 2.73e-05 GTGCCCCACA CCTGCAGGG GGCAGTGACT chr10:33325898-33326398 - 14 3.15e-05 TGTGACAAAT ACTGCTGAG CAAAGAGGTG chr11:92868163-92868663 - 43 3.15e-05 ATTTACATAC ACTGCTGAG ACAGTAAAAA chr5:175385676-175386176 - 63 3.15e-05 ATTCCTTTTT ACTGCTGAG TGGTTTTCTA chr15:96053095-96053595 - 87 3.54e-05 GGCTC CCCGCTGTT TAACGACAAT chr10:36423717-36424217 + 52 6.08e-05 GCAGTGGAAT CCCGCTGAT TTACTACTTA chr9:82923409-82923909 + 35 7.71e-05 TCTCCGAAGC CCCGCGGAG CTGCTGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:3890061-3890561 2e-06 9_[+3]_82 chr9:135329983-135330483 2e-06 82_[+3]_9 chr6:128066839-128067339 2e-06 65_[+3]_26 chr10:72228276-72228776 2e-06 89_[+3]_2 chr9:111961498-111961998 2e-06 42_[+3]_49 chr22:24026697-24027197 2e-06 24_[+3]_67 chr8:30254801-30255301 2e-06 27_[-3]_64 chr3:186319893-186320393 2e-06 6_[-3]_85 chr18:395716-396216 2e-06 16_[+3]_75 chr2:206230212-206230712 2e-06 34_[-3]_57 chr12:89769185-89769685 2e-06 13_[+3]_78 chr4:23818163-23818663 2e-06 50_[+3]_41 chr4:110904623-110905123 3.4e-06 53_[-3]_38 chr8:29126517-29127017 3.4e-06 33_[+3]_58 chr7:81299211-81299711 3.4e-06 24_[+3]_67 chr16:22232694-22233194 3.4e-06 67_[-3]_24 chr9:16953996-16954496 3.4e-06 20_[+3]_71 chr19:28596479-28596979 3.4e-06 59_[+3]_32 chr17:27915608-27916108 3.4e-06 60_[+3]_31 chr2:60633567-60634067 5.4e-06 35_[-3]_56 chr5:136420522-136421022 5.4e-06 76_[+3]_15 chr6:54879150-54879650 5.4e-06 26_[+3]_65 chr1:59261502-59262002 5.4e-06 88_[-3]_3 chr4:80307274-80307774 8.2e-06 57_[+3]_34 chr4:53943648-53944148 8.2e-06 41_[+3]_50 chr13:21043940-21044440 8.2e-06 63_[-3]_28 chrX:12240417-12240917 8.2e-06 85_[-3]_6 chr14:96888511-96889011 8.2e-06 59_[+3]_32 chr8:50056573-50057073 8.2e-06 51_[-3]_40 chr4:111883490-111883990 1.2e-05 21_[+3]_70 chr10:7433224-7433724 1.2e-05 47_[+3]_44 chr4:185914645-185915145 1.2e-05 72_[+3]_19 chr5:59317174-59317674 1.2e-05 58_[-3]_33 chr6:21264311-21264811 1.3e-05 36_[+3]_55 chr18:49655995-49656495 1.3e-05 34_[-3]_57 chr11:123213185-12321368 1.3e-05 91_[+3] chr18:59484756-59485256 1.6e-05 55_[+3]_36 chr7:105024702-105025202 1.6e-05 62_[-3]_29 chr15:36925631-36926131 1.6e-05 36_[+3]_55 chr6:123841208-123841708 2.2e-05 89_[-3]_2 chr6:138088174-138088674 2.2e-05 62_[-3]_29 chr1:38724121-38724621 2.2e-05 28_[-3]_63 chr20:20215869-20216369 2.4e-05 9_[-3]_82 chr8:37359521-37360021 2.7e-05 10_[-3]_81 chr1:87718279-87718779 2.7e-05 38_[-3]_53 chr13:112213419-11221391 2.7e-05 56_[-3]_35 chr10:33325898-33326398 3.1e-05 13_[-3]_78 chr11:92868163-92868663 3.1e-05 42_[-3]_49 chr5:175385676-175386176 3.1e-05 62_[-3]_29 chr15:96053095-96053595 3.5e-05 86_[-3]_5 chr10:36423717-36424217 6.1e-05 51_[+3]_40 chr9:82923409-82923909 7.7e-05 34_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGCTGTG width=9 seqs=52 chr17:3890061-3890561 ( 10) CCTGCTGTG 1 chr9:135329983-135330483 ( 83) CCTGCTGTG 1 chr6:128066839-128067339 ( 66) CCTGCTGTG 1 chr10:72228276-72228776 ( 90) CCTGCTGTG 1 chr9:111961498-111961998 ( 43) CCTGCTGTG 1 chr22:24026697-24027197 ( 25) CCTGCTGTG 1 chr8:30254801-30255301 ( 28) CCTGCTGTG 1 chr3:186319893-186320393 ( 7) CCTGCTGTG 1 chr18:395716-396216 ( 17) CCTGCTGTG 1 chr2:206230212-206230712 ( 35) CCTGCTGTG 1 chr12:89769185-89769685 ( 14) CCTGCTGTG 1 chr4:23818163-23818663 ( 51) CCTGCTGTG 1 chr4:110904623-110905123 ( 54) CCTGCTGGG 1 chr8:29126517-29127017 ( 34) CCTGCTGGG 1 chr7:81299211-81299711 ( 25) CCTGCTGGG 1 chr16:22232694-22233194 ( 68) CCTGCTGGG 1 chr9:16953996-16954496 ( 21) CCTGCTGGG 1 chr19:28596479-28596979 ( 60) CCTGCTGGG 1 chr17:27915608-27916108 ( 61) CCTGCTGGG 1 chr2:60633567-60634067 ( 36) CCTGCTGAG 1 chr5:136420522-136421022 ( 77) CCTGCTGAG 1 chr6:54879150-54879650 ( 27) CCTGCTGAG 1 chr1:59261502-59262002 ( 89) CCTGCTGAG 1 chr4:80307274-80307774 ( 58) CCTGCTGTT 1 chr4:53943648-53944148 ( 42) CCTGCTGTT 1 chr13:21043940-21044440 ( 64) CCTGCTGTT 1 chrX:12240417-12240917 ( 86) CCTGCTGTT 1 chr14:96888511-96889011 ( 60) CCTGCTGTT 1 chr8:50056573-50057073 ( 52) CCTGCTGTT 1 chr4:111883490-111883990 ( 22) CCCGCTGTG 1 chr10:7433224-7433724 ( 48) CCTGCTGGT 1 chr4:185914645-185915145 ( 73) CCTGCTGGT 1 chr5:59317174-59317674 ( 59) CCTGCTGGT 1 chr6:21264311-21264811 ( 37) CCTGCGGTG 1 chr18:49655995-49656495 ( 35) CCTGCGGTG 1 chr11:123213185-12321368 ( 92) CCTGCGGTG 1 chr18:59484756-59485256 ( 56) ACTGCTGTG 1 chr7:105024702-105025202 ( 63) ACTGCTGTG 1 chr15:36925631-36926131 ( 37) ACTGCTGTG 1 chr6:123841208-123841708 ( 90) CCTGCAGTG 1 chr6:138088174-138088674 ( 63) CCTGCTGAT 1 chr1:38724121-38724621 ( 29) CCTGCAGTG 1 chr20:20215869-20216369 ( 10) ACTGCTGGG 1 chr8:37359521-37360021 ( 11) CCCGCTGAG 1 chr1:87718279-87718779 ( 39) CCTGCAGGG 1 chr13:112213419-11221391 ( 57) CCTGCAGGG 1 chr10:33325898-33326398 ( 14) ACTGCTGAG 1 chr11:92868163-92868663 ( 43) ACTGCTGAG 1 chr5:175385676-175386176 ( 63) ACTGCTGAG 1 chr15:96053095-96053595 ( 87) CCCGCTGTT 1 chr10:36423717-36424217 ( 52) CCCGCTGAT 1 chr9:82923409-82923909 ( 35) CCCGCGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55108 bayes= 11.6791 E= 1.2e-019 -112 206 -1234 -1234 -1234 227 -1234 -1234 -1234 -110 -1234 162 -1234 -1234 227 -1234 -1234 227 -1234 -1234 -193 -1234 -143 153 -1234 -1234 227 -1234 -47 -1234 27 88 -1234 -1234 189 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 52 E= 1.2e-019 0.134615 0.865385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.096154 0.000000 0.903846 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.076923 0.846154 0.000000 0.000000 1.000000 0.000000 0.211538 0.000000 0.250000 0.538462 0.000000 0.000000 0.769231 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGTG MEME-3 regular expression -------------------------------------------------------------------------------- CCTGCTG[TGA][GT] -------------------------------------------------------------------------------- Time 953.96 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGAYRGRGTYTYRCYCTGTY MEME-4 width = 22 sites = 8 llr = 186 E-value = 2.9e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:a:5:6:::::4:1::::: pos.-specific C :::::61::::6:5:938:::6 probability G :a:a::4a4a::::6:1::9:: matrix T a::::4::::a4a5:153a1a4 bits 2.3 * * * * 2.0 * * * * 1.8 ***** * ** * * * 1.6 ***** * ** * * *** Relative 1.4 ***** * ** * * **** Entropy 1.1 ****** * **** ** ***** (33.5 bits) 0.9 ****** ********* ***** 0.7 **************** ***** 0.5 **************** ***** 0.2 ********************** 0.0 ---------------------- Multilevel TGAGACAGAGTCTCGCTCTGTC consensus TG G T TA CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:24043447-24043947 + 71 2.62e-13 tatttttttt tgagacagggtcttgctctgtc attgaggc chr16:30570496-30570996 + 74 4.27e-13 tatttatttt tgagacggagtctcactctgtc accca chr22:18020690-18021190 - 3 1.85e-12 TTTATTTATT TGAGACAGGGTCTCACCCTGTC AC chr17:35567290-35567790 - 3 2.78e-12 TTTATTTTCC TGAGATGGAGTTTCGCTCTGTC GC chr16:21820748-21821248 + 79 1.22e-11 tattttcttt tgagaccgagtcttgccctgtt chr10:72580219-72580719 + 75 3.76e-11 ttatttattt tgagacagagtctcacattgtc accc chr5:139489857-139490357 + 76 1.06e-10 tatttatttt tgagatggagttttgctctttt tgc chr8:17674943-17675443 + 72 3.29e-10 AACAAGTTCT TGAGATAGGGTTTTGTGTTGTT TCAGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:24043447-24043947 2.6e-13 70_[+4]_8 chr16:30570496-30570996 4.3e-13 73_[+4]_5 chr22:18020690-18021190 1.8e-12 2_[-4]_76 chr17:35567290-35567790 2.8e-12 2_[-4]_76 chr16:21820748-21821248 1.2e-11 78_[+4] chr10:72580219-72580719 3.8e-11 74_[+4]_4 chr5:139489857-139490357 1.1e-10 75_[+4]_3 chr8:17674943-17675443 3.3e-10 71_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGAYRGRGTYTYRCYCTGTY width=22 seqs=8 chr1:24043447-24043947 ( 71) TGAGACAGGGTCTTGCTCTGTC 1 chr16:30570496-30570996 ( 74) TGAGACGGAGTCTCACTCTGTC 1 chr22:18020690-18021190 ( 3) TGAGACAGGGTCTCACCCTGTC 1 chr17:35567290-35567790 ( 3) TGAGATGGAGTTTCGCTCTGTC 1 chr16:21820748-21821248 ( 79) TGAGACCGAGTCTTGCCCTGTT 1 chr10:72580219-72580719 ( 75) TGAGACAGAGTCTCACATTGTC 1 chr5:139489857-139490357 ( 76) TGAGATGGAGTTTTGCTCTTTT 1 chr8:17674943-17675443 ( 72) TGAGATAGGGTTTTGTGTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 13.267 E= 2.9e-010 -965 -965 -965 177 -965 -965 227 -965 177 -965 -965 -965 -965 -965 227 -965 177 -965 -965 -965 -965 159 -965 35 77 -73 86 -965 -965 -965 227 -965 109 -965 86 -965 -965 -965 227 -965 -965 -965 -965 177 -965 159 -965 35 -965 -965 -965 177 -965 127 -965 77 35 -965 159 -965 -965 208 -965 -123 -123 27 -73 77 -965 186 -965 -23 -965 -965 -965 177 -965 -965 208 -123 -965 -965 -965 177 -965 159 -965 35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 8 E= 2.9e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.500000 0.125000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.375000 0.000000 0.625000 0.000000 0.000000 0.875000 0.000000 0.125000 0.125000 0.250000 0.125000 0.500000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGAYRGRGTYTYRCYCTGTY MEME-4 regular expression -------------------------------------------------------------------------------- TGAGA[CT][AG]G[AG]GT[CT]T[CT][GA]C[TC][CT]TGT[CT] -------------------------------------------------------------------------------- Time 1247.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMATAAAA MEME-5 width = 9 sites = 114 llr = 962 E-value = 2.8e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::59:aaa7 pos.-specific C 373:::::: probability G 7::1::::2 matrix T :32:a:::2 bits 2.3 2.0 1.8 **** 1.6 **** Relative 1.4 * ***** Entropy 1.1 ** ***** (12.2 bits) 0.9 ** ***** 0.7 ** ****** 0.5 ********* 0.2 ********* 0.0 --------- Multilevel GCAATAAAA consensus CTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr13:21949769-21950269 + 31 7.94e-06 TTTGTGACAA GCAATAAAA TACAAGTGGA chr8:124077224-124077724 - 45 7.94e-06 TTCCTCAGGA GCAATAAAA TGTAAGAGGC chr1:244347915-244348415 - 92 7.94e-06 . GCAATAAAA CCTACCACAT chr1:219273044-219273544 + 18 7.94e-06 TGACACAACT GCAATAAAA TAGCAGTTTG chr3:194134843-194135343 + 59 7.94e-06 AGCCGCGGCG GCAATAAAA CATCCTGGCA chr2:224678224-224678724 + 44 7.94e-06 CTTACGTGAT GCAATAAAA AAGATTAAGG chr15:77067292-77067792 - 46 7.94e-06 GCAACTGTAG GCAATAAAA ACTATGTTGC chr10:15796073-15796573 + 85 7.94e-06 ctgaaaagtg gcaataaaa gcttaac chr3:157477399-157477899 + 41 7.94e-06 cacaaaagag gcaataaaa cacaaagtag chr11:66789312-66789812 + 89 7.94e-06 ATGTCAAGTA GCAATAAAA AGG chr11:32890783-32891283 - 54 7.94e-06 CAAACAAGTG GCAATAAAA CCTTTATAGT chr5:83097790-83098290 - 4 7.94e-06 GTATTAAAAA GCAATAAAA TGA chr7:26534950-26535450 + 71 7.94e-06 CATAAAATGG GCAATAAAA CCGAGGGCTT chr20:25252784-25253284 - 51 7.94e-06 AGTGATAAGA GCAATAAAA ATGAAAGAAG chr11:123213185-12321368 - 39 7.94e-06 GTTCCACAGG GCAATAAAA GTATAGATTA chr4:23818163-23818663 - 17 7.94e-06 AAAATAGGCG GCAATAAAA AAGCTATAGT chr3:181328985-181329485 + 90 1.36e-05 TCCTTTAGAT GCCATAAAA CT chr8:37547855-37548355 + 57 1.36e-05 CTTCAAAGCT GCCATAAAA GTGCCATAAT chr7:70098023-70098523 + 79 1.36e-05 GTGGCAAGAA GCCATAAAA CTTGCCTGAA chr17:48577408-48577908 + 65 1.36e-05 GGCCCACCAG GCCATAAAA ATTTATGGGG chr3:123936275-123936775 + 28 1.36e-05 tccatcagca gccataaaa aagaatgaga chr6:84362108-84362608 - 22 1.36e-05 TCCATAACAA GCCATAAAA GTTTATGATG chr12:51405731-51406231 + 12 1.36e-05 TTAAATTAAG GCCATAAAA TAGGGTGTGA chr4:156959197-156959697 - 18 1.36e-05 TTATGGAAAG GCCATAAAA AGCTACAGGG chr2:46481488-46481988 - 65 2.15e-05 ACATCATATC CCAATAAAA CTGAAAAGTG chrX:136057527-136058027 + 73 2.15e-05 AACAATGTTT CCAATAAAA AGTTTTATTA chr8:37359521-37360021 - 61 2.15e-05 GTCATGCAGG CCAATAAAA TTGGCCTCAT chr10:77305597-77306097 + 84 2.71e-05 TATAAAGCAG CCCATaaaa tgacatca chr9:135329983-135330483 + 28 2.71e-05 CAATCTGCTC CCCATAAAA AGATTGTATT chr8:17674943-17675443 + 6 2.71e-05 CTTGT CCCATAAAA TTTAACAACA chr4:185912727-185913227 - 23 2.71e-05 GTTTATTGCA CCCATAAAA CTAATGCAGC chr1:219279332-219279832 + 69 2.71e-05 CATTGGAAGA CCCATAAAA CTGAAGTCTG chrX:12240417-12240917 - 43 2.71e-05 TATAAAAAGC CCCATAAAA ACCAAAAAAC chr11:131998015-13199851 - 30 2.71e-05 TTTACGAGTC CCCATAAAA GCAGCAAAAT chr9:127388333-127388833 - 53 3.27e-05 TTAACTGCGT GCAATAAAG ATGAGTGATG chr1:208747842-208748342 - 65 3.27e-05 TGTCTGTTTT GCAATAAAG CAGCTCCTAC chr10:33388265-33388765 - 77 3.27e-05 TTGCAAGAAA GCAATAAAG TTGCCTTTTC chr2:48732937-48733437 - 27 3.27e-05 ATTATCCCCA GCAATAAAG ATTCTGGAAT chr6:13006937-13007437 - 29 3.27e-05 GGGAAGTCAA GCAATAAAG GAATGACTGC chr1:38724121-38724621 - 57 3.27e-05 ATCTCACGCA GCAATAAAG CTGTTTGCCT chr1:81032869-81033369 - 14 5.59e-05 GTGATATCAT GTAATAAAA GTGCTGTTTT chr5:174514895-174515395 - 66 5.59e-05 GAGGAGACCA GTAATAAAA CATGATTACA chr7:27165479-27165979 - 2 5.59e-05 TATGGCTTTT GCTATAAAA A chr20:20215869-20216369 - 1 5.59e-05 GACTGCTGGG GCTATAAAA chr6:125913843-125914343 + 17 5.59e-05 tgaatcacaa gctataaaa tcatgcccct chrX:23944266-23944766 - 13 5.59e-05 CATATAAACA GCTATAAAA ATGTTTAAAG chr13:51638390-51638890 - 82 5.59e-05 AGTTATGTAG GTAATAAAA TGAATGAAAT chr2:196853408-196853908 + 30 5.59e-05 ttatcttttg gtaataaaa aacctaataa chr5:59317174-59317674 - 83 5.59e-05 ATAGGTCTT GTAATAAAA AGGCAGTTAG chr12:89769185-89769685 - 32 5.59e-05 GACCCACCAA GCCATAAAG TTAGTTGCGC chr15:36925631-36926131 + 65 5.59e-05 TAATGACAAA GTAATAAAA TTGCTATTCT chr20:35319244-35319744 - 39 6.38e-05 TTTTTATTAT GTCATAAAA AGTGCATGGC chr6:11270217-11270717 - 83 6.38e-05 TCTCCAGCT GTCATAAAA GTGTCTGCTT chr11:70483045-70483545 + 15 6.38e-05 ctccccagtt gtcataaaa attacccacc chr3:171801819-171802319 + 33 6.38e-05 ATGAATCATT GTCATAAAA ACAGCAACAT chr1:184930564-184931064 - 66 6.38e-05 ACACTAATGT GTCATAAAA CCATAATGTA chr8:37302614-37303114 + 8 7.18e-05 GGAACAT GCAATAAAT CATTAGAATG chr10:129440861-12944136 + 14 7.18e-05 CAAATGCCTT GCAATAAAT CAAAGTTAGG chr2:207683811-207684311 + 78 7.18e-05 GTACTAGGAA GCAATAAAT GACAAGGACT chr1:220119021-220119521 - 82 7.18e-05 ACTTCATAAA GCAATAAAT CCATCATAAA chr17:68381072-68381572 - 58 7.18e-05 ACCTCTTAAA GCAATAAAT ATTTAGCCAC chr12:54033461-54033961 + 1 7.74e-05 . GCCATAAAT TTTACGATCC chr10:2882566-2883066 - 49 7.74e-05 TCCTGGGAGG GCCATAAAT CCTGTGCAAC chr6:124822064-124822564 + 55 7.74e-05 CTGTCAACCT GCCATAAAT ATGTCTTGTA chr8:37360450-37360950 + 16 8.30e-05 CAAATGAGAG CCAATAAAG GGTGAATTGC chr7:98476695-98477195 + 29 8.30e-05 TACGAGATCT CCAATAAAG TTCTAAGCGG chr16:25049563-25050063 + 30 1.06e-04 tgcagcctgt cctataaaa gtgtaacaca chr12:54052075-54052575 + 13 1.06e-04 GTTTTACAGC CCTATAAAA GCTGTAGCGA chr21:38990096-38990596 + 76 1.06e-04 GGAAGACTTG CCTATAAAA CACAGCATGC chr4:185914645-185915145 - 53 1.06e-04 ATCAAACGAC CCCATAAAG TCATTTCCTA chr12:806375-806875 - 57 1.06e-04 TGGTCACAAA CTAATAAAA GCCACAACTA chr6:82072060-82072560 - 41 1.06e-04 AGTTACTGTG CTAATAAAA ATATAATGAG chr6:128066839-128067339 - 57 1.06e-04 CCACAGCAGG CTAATAAAA CCTTATAAAC chr1:87718279-87718779 + 66 1.06e-04 TAAATAGCAT CCTATAAAA CAATGTCCTC chr20:5582150-5582650 + 86 1.06e-04 ACATATATAC CTAATAAAA ACCACA chr1:179930918-179931418 - 24 1.06e-04 AGTTTCTGCA CCTATAAAA TGGAGGTAAT chr15:55825189-55825689 + 25 1.06e-04 tgtccttgag cctataaaa cctgtctcac chr5:175378372-175378872 + 70 1.20e-04 atgttttcag ctcataaaa cctcttggaa chr10:75613678-75614178 + 48 1.20e-04 TCAGGGAAAT GCAGTAAAA TTTATCAGTA chr8:37479291-37479791 - 10 1.20e-04 CCGGGGACTT GCAGTAAAA TTTATCAGC chr10:22552784-22553284 + 78 1.20e-04 ATAATCCTAC CTCATAAAA CTCTGGACAC chr9:1462599-1463099 - 18 1.20e-04 TTTTTTACAG CTCATAAAA ATACGTGCCA chr10:7302357-7302857 - 41 1.20e-04 GACCTTCTTT CTCATAAAA ACAAGAATCA chr10:88181894-88182394 - 61 1.20e-04 ACCCTTGAGG CTCATAAAA GAGGCAGTTA chr7:51606687-51607187 + 2 1.20e-04 c ctcataaaa ccctttatga chr15:58038597-58039097 + 57 1.20e-04 ATTTAAATTG GCAGTAAAA CCAGAGTATT chr12:65606270-65606770 + 21 1.20e-04 GTTAATATCC CTCATAAAA CTCTACCCAC chr10:35890236-35890736 - 15 1.20e-04 CCCGGGAACC CTCATAAAA ATGAGAGGGT chr11:72308465-72308965 - 34 1.20e-04 TGGGCGCAGA GCAGTAAAA CATATTGTAT chr1:52955572-52956072 + 56 1.20e-04 ggaagaagga gcagtaaaa actaatctct chr10:125633458-12563395 - 13 1.20e-04 AATTTCATTG CTCATAAAA AAGAATCAGA chr6:16754787-16755287 - 30 1.20e-04 AACTGGTGAG CTCATAAAA AGCACTGTCT chr2:109261151-109261651 + 53 1.20e-04 TTACAGCAGA GCAGTAAAA TGTGCAGTCT chr6:137665268-137665768 - 61 1.45e-04 AAGGACCACA GCTATAAAG TGTCACGCAA chr5:125485025-125485525 + 68 1.45e-04 GCCTAGCCTT GCTATAAAG TCACTCCGTG chr4:147768088-147768588 - 37 1.45e-04 ATTTTACAAC GTAATAAAG TAATGTAAGT chr14:76486250-76486750 - 20 1.45e-04 ATTAGCAGAG GTAATAAAG GGAGATGTAA chr10:121819030-12181953 + 60 1.45e-04 TTAAGAAATA GCTATAAAG ATAACGCATA chr4:173252322-173252822 - 50 1.45e-04 CAATCAACAG CCAATAAAT TACTCAGTCA chr11:15370652-15371152 + 14 1.45e-04 GAGGTCATCT GTAATAAAG ATGTTAATCC chr6:1850783-1851283 - 25 1.45e-04 GGCTTTCTGT GTAATAAAG TACTAAAAGT chr6:167829440-167829940 - 79 1.68e-04 GATTAATGAA GTTATAAAA TTTGAAAACA chr3:16482918-16483418 + 45 1.87e-04 TTACAGAGAG GTAATAAAT ACCTCATTAA chr13:37046921-37047421 + 66 1.87e-04 ACAGGTTACT GCTATAAAT CTGTAAATAA chr5:90547962-90548462 + 82 1.87e-04 CAAACCTCAA GTAATAAAT CTCAAAAGCT chr1:234700146-234700646 - 69 1.87e-04 AAAAATAACA GTAATAAAT AATGCCTCTG chr13:99677542-99678042 - 64 1.87e-04 GCAAAAAAGG GCTATAAAT CTTTTTATGT chr4:128393055-128393555 - 73 1.87e-04 AAATTACAAG GCTATAAAT ATATCAACTG chr10:72098722-72099222 - 63 1.87e-04 AGTTTGCAGA GCTATAAAT CTGTCAGTCT chr9:1458392-1458892 - 62 1.95e-04 CCACCAAGTG GTCATAAAT GTGTCATTAA chr1:85274861-85275361 - 86 2.00e-04 TGAGTG CCAGTAAAA CCTTGAACTT chr15:70494072-70494572 - 4 3.01e-04 ACGACCTCAA GCAGTAAAT CAA chr20:57579945-57580445 + 68 3.05e-04 TCGGCAGCAG GCCGTAAAT CAAATGAATA chr10:99519974-99520474 + 77 4.27e-04 TTACTTTACC GCGATAAAG CGCTGGGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:21949769-21950269 7.9e-06 30_[+5]_61 chr8:124077224-124077724 7.9e-06 44_[-5]_47 chr1:244347915-244348415 7.9e-06 91_[-5] chr1:219273044-219273544 7.9e-06 17_[+5]_74 chr3:194134843-194135343 7.9e-06 58_[+5]_33 chr2:224678224-224678724 7.9e-06 43_[+5]_48 chr15:77067292-77067792 7.9e-06 45_[-5]_46 chr10:15796073-15796573 7.9e-06 84_[+5]_7 chr3:157477399-157477899 7.9e-06 40_[+5]_51 chr11:66789312-66789812 7.9e-06 88_[+5]_3 chr11:32890783-32891283 7.9e-06 53_[-5]_38 chr5:83097790-83098290 7.9e-06 3_[-5]_88 chr7:26534950-26535450 7.9e-06 70_[+5]_21 chr20:25252784-25253284 7.9e-06 50_[-5]_41 chr11:123213185-12321368 7.9e-06 38_[-5]_53 chr4:23818163-23818663 7.9e-06 16_[-5]_75 chr3:181328985-181329485 1.4e-05 89_[+5]_2 chr8:37547855-37548355 1.4e-05 56_[+5]_35 chr7:70098023-70098523 1.4e-05 78_[+5]_13 chr17:48577408-48577908 1.4e-05 64_[+5]_27 chr3:123936275-123936775 1.4e-05 27_[+5]_64 chr6:84362108-84362608 1.4e-05 21_[-5]_70 chr12:51405731-51406231 1.4e-05 11_[+5]_80 chr4:156959197-156959697 1.4e-05 17_[-5]_74 chr2:46481488-46481988 2.1e-05 64_[-5]_27 chrX:136057527-136058027 2.1e-05 72_[+5]_19 chr8:37359521-37360021 2.1e-05 60_[-5]_31 chr10:77305597-77306097 2.7e-05 83_[+5]_8 chr9:135329983-135330483 2.7e-05 27_[+5]_64 chr8:17674943-17675443 2.7e-05 5_[+5]_86 chr4:185912727-185913227 2.7e-05 22_[-5]_69 chr1:219279332-219279832 2.7e-05 68_[+5]_23 chrX:12240417-12240917 2.7e-05 42_[-5]_49 chr11:131998015-13199851 2.7e-05 29_[-5]_62 chr9:127388333-127388833 3.3e-05 52_[-5]_39 chr1:208747842-208748342 3.3e-05 64_[-5]_27 chr10:33388265-33388765 3.3e-05 76_[-5]_15 chr2:48732937-48733437 3.3e-05 26_[-5]_65 chr6:13006937-13007437 3.3e-05 28_[-5]_63 chr1:38724121-38724621 3.3e-05 56_[-5]_35 chr1:81032869-81033369 5.6e-05 13_[-5]_78 chr5:174514895-174515395 5.6e-05 65_[-5]_26 chr7:27165479-27165979 5.6e-05 1_[-5]_90 chr20:20215869-20216369 5.6e-05 [-5]_91 chr6:125913843-125914343 5.6e-05 16_[+5]_75 chrX:23944266-23944766 5.6e-05 12_[-5]_79 chr13:51638390-51638890 5.6e-05 81_[-5]_10 chr2:196853408-196853908 5.6e-05 29_[+5]_62 chr5:59317174-59317674 5.6e-05 82_[-5]_9 chr12:89769185-89769685 5.6e-05 31_[-5]_60 chr15:36925631-36926131 5.6e-05 64_[+5]_27 chr20:35319244-35319744 6.4e-05 38_[-5]_53 chr6:11270217-11270717 6.4e-05 82_[-5]_9 chr11:70483045-70483545 6.4e-05 14_[+5]_77 chr3:171801819-171802319 6.4e-05 32_[+5]_59 chr1:184930564-184931064 6.4e-05 65_[-5]_26 chr8:37302614-37303114 7.2e-05 7_[+5]_84 chr10:129440861-12944136 7.2e-05 13_[+5]_78 chr2:207683811-207684311 7.2e-05 77_[+5]_14 chr1:220119021-220119521 7.2e-05 81_[-5]_10 chr17:68381072-68381572 7.2e-05 57_[-5]_34 chr12:54033461-54033961 7.7e-05 [+5]_91 chr10:2882566-2883066 7.7e-05 48_[-5]_43 chr6:124822064-124822564 7.7e-05 54_[+5]_37 chr8:37360450-37360950 8.3e-05 15_[+5]_76 chr7:98476695-98477195 8.3e-05 28_[+5]_63 chr16:25049563-25050063 0.00011 29_[+5]_62 chr12:54052075-54052575 0.00011 12_[+5]_79 chr21:38990096-38990596 0.00011 75_[+5]_16 chr4:185914645-185915145 0.00011 52_[-5]_39 chr12:806375-806875 0.00011 56_[-5]_35 chr6:82072060-82072560 0.00011 40_[-5]_51 chr6:128066839-128067339 0.00011 56_[-5]_35 chr1:87718279-87718779 0.00011 65_[+5]_26 chr20:5582150-5582650 0.00011 85_[+5]_6 chr1:179930918-179931418 0.00011 23_[-5]_68 chr15:55825189-55825689 0.00011 24_[+5]_67 chr5:175378372-175378872 0.00012 69_[+5]_22 chr10:75613678-75614178 0.00012 47_[+5]_44 chr8:37479291-37479791 0.00012 9_[-5]_82 chr10:22552784-22553284 0.00012 77_[+5]_14 chr9:1462599-1463099 0.00012 17_[-5]_74 chr10:7302357-7302857 0.00012 40_[-5]_51 chr10:88181894-88182394 0.00012 60_[-5]_31 chr7:51606687-51607187 0.00012 1_[+5]_90 chr15:58038597-58039097 0.00012 56_[+5]_35 chr12:65606270-65606770 0.00012 20_[+5]_71 chr10:35890236-35890736 0.00012 14_[-5]_77 chr11:72308465-72308965 0.00012 33_[-5]_58 chr1:52955572-52956072 0.00012 55_[+5]_36 chr10:125633458-12563395 0.00012 12_[-5]_79 chr6:16754787-16755287 0.00012 29_[-5]_62 chr2:109261151-109261651 0.00012 52_[+5]_39 chr6:137665268-137665768 0.00015 60_[-5]_31 chr5:125485025-125485525 0.00015 67_[+5]_24 chr4:147768088-147768588 0.00015 36_[-5]_55 chr14:76486250-76486750 0.00015 19_[-5]_72 chr10:121819030-12181953 0.00015 59_[+5]_32 chr4:173252322-173252822 0.00015 49_[-5]_42 chr11:15370652-15371152 0.00015 13_[+5]_78 chr6:1850783-1851283 0.00015 24_[-5]_67 chr6:167829440-167829940 0.00017 78_[-5]_13 chr3:16482918-16483418 0.00019 44_[+5]_47 chr13:37046921-37047421 0.00019 65_[+5]_26 chr5:90547962-90548462 0.00019 81_[+5]_10 chr1:234700146-234700646 0.00019 68_[-5]_23 chr13:99677542-99678042 0.00019 63_[-5]_28 chr4:128393055-128393555 0.00019 72_[-5]_19 chr10:72098722-72099222 0.00019 62_[-5]_29 chr9:1458392-1458892 0.00019 61_[-5]_30 chr1:85274861-85275361 0.0002 85_[-5]_6 chr15:70494072-70494572 0.0003 3_[-5]_88 chr20:57579945-57580445 0.00031 67_[+5]_24 chr10:99519974-99520474 0.00043 76_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMATAAAA width=9 seqs=114 chr13:21949769-21950269 ( 31) GCAATAAAA 1 chr8:124077224-124077724 ( 45) GCAATAAAA 1 chr1:244347915-244348415 ( 92) GCAATAAAA 1 chr1:219273044-219273544 ( 18) GCAATAAAA 1 chr3:194134843-194135343 ( 59) GCAATAAAA 1 chr2:224678224-224678724 ( 44) GCAATAAAA 1 chr15:77067292-77067792 ( 46) GCAATAAAA 1 chr10:15796073-15796573 ( 85) GCAATAAAA 1 chr3:157477399-157477899 ( 41) GCAATAAAA 1 chr11:66789312-66789812 ( 89) GCAATAAAA 1 chr11:32890783-32891283 ( 54) GCAATAAAA 1 chr5:83097790-83098290 ( 4) GCAATAAAA 1 chr7:26534950-26535450 ( 71) GCAATAAAA 1 chr20:25252784-25253284 ( 51) GCAATAAAA 1 chr11:123213185-12321368 ( 39) GCAATAAAA 1 chr4:23818163-23818663 ( 17) GCAATAAAA 1 chr3:181328985-181329485 ( 90) GCCATAAAA 1 chr8:37547855-37548355 ( 57) GCCATAAAA 1 chr7:70098023-70098523 ( 79) GCCATAAAA 1 chr17:48577408-48577908 ( 65) GCCATAAAA 1 chr3:123936275-123936775 ( 28) GCCATAAAA 1 chr6:84362108-84362608 ( 22) GCCATAAAA 1 chr12:51405731-51406231 ( 12) GCCATAAAA 1 chr4:156959197-156959697 ( 18) GCCATAAAA 1 chr2:46481488-46481988 ( 65) CCAATAAAA 1 chrX:136057527-136058027 ( 73) CCAATAAAA 1 chr8:37359521-37360021 ( 61) CCAATAAAA 1 chr10:77305597-77306097 ( 84) CCCATAAAA 1 chr9:135329983-135330483 ( 28) CCCATAAAA 1 chr8:17674943-17675443 ( 6) CCCATAAAA 1 chr4:185912727-185913227 ( 23) CCCATAAAA 1 chr1:219279332-219279832 ( 69) CCCATAAAA 1 chrX:12240417-12240917 ( 43) CCCATAAAA 1 chr11:131998015-13199851 ( 30) CCCATAAAA 1 chr9:127388333-127388833 ( 53) GCAATAAAG 1 chr1:208747842-208748342 ( 65) GCAATAAAG 1 chr10:33388265-33388765 ( 77) GCAATAAAG 1 chr2:48732937-48733437 ( 27) GCAATAAAG 1 chr6:13006937-13007437 ( 29) GCAATAAAG 1 chr1:38724121-38724621 ( 57) GCAATAAAG 1 chr1:81032869-81033369 ( 14) GTAATAAAA 1 chr5:174514895-174515395 ( 66) GTAATAAAA 1 chr7:27165479-27165979 ( 2) GCTATAAAA 1 chr20:20215869-20216369 ( 1) GCTATAAAA 1 chr6:125913843-125914343 ( 17) GCTATAAAA 1 chrX:23944266-23944766 ( 13) GCTATAAAA 1 chr13:51638390-51638890 ( 82) GTAATAAAA 1 chr2:196853408-196853908 ( 30) GTAATAAAA 1 chr5:59317174-59317674 ( 83) GTAATAAAA 1 chr12:89769185-89769685 ( 32) GCCATAAAG 1 chr15:36925631-36926131 ( 65) GTAATAAAA 1 chr20:35319244-35319744 ( 39) GTCATAAAA 1 chr6:11270217-11270717 ( 83) GTCATAAAA 1 chr11:70483045-70483545 ( 15) GTCATAAAA 1 chr3:171801819-171802319 ( 33) GTCATAAAA 1 chr1:184930564-184931064 ( 66) GTCATAAAA 1 chr8:37302614-37303114 ( 8) GCAATAAAT 1 chr10:129440861-12944136 ( 14) GCAATAAAT 1 chr2:207683811-207684311 ( 78) GCAATAAAT 1 chr1:220119021-220119521 ( 82) GCAATAAAT 1 chr17:68381072-68381572 ( 58) GCAATAAAT 1 chr12:54033461-54033961 ( 1) GCCATAAAT 1 chr10:2882566-2883066 ( 49) GCCATAAAT 1 chr6:124822064-124822564 ( 55) GCCATAAAT 1 chr8:37360450-37360950 ( 16) CCAATAAAG 1 chr7:98476695-98477195 ( 29) CCAATAAAG 1 chr16:25049563-25050063 ( 30) CCTATAAAA 1 chr12:54052075-54052575 ( 13) CCTATAAAA 1 chr21:38990096-38990596 ( 76) CCTATAAAA 1 chr4:185914645-185915145 ( 53) CCCATAAAG 1 chr12:806375-806875 ( 57) CTAATAAAA 1 chr6:82072060-82072560 ( 41) CTAATAAAA 1 chr6:128066839-128067339 ( 57) CTAATAAAA 1 chr1:87718279-87718779 ( 66) CCTATAAAA 1 chr20:5582150-5582650 ( 86) CTAATAAAA 1 chr1:179930918-179931418 ( 24) CCTATAAAA 1 chr15:55825189-55825689 ( 25) CCTATAAAA 1 chr5:175378372-175378872 ( 70) CTCATAAAA 1 chr10:75613678-75614178 ( 48) GCAGTAAAA 1 chr8:37479291-37479791 ( 10) GCAGTAAAA 1 chr10:22552784-22553284 ( 78) CTCATAAAA 1 chr9:1462599-1463099 ( 18) CTCATAAAA 1 chr10:7302357-7302857 ( 41) CTCATAAAA 1 chr10:88181894-88182394 ( 61) CTCATAAAA 1 chr7:51606687-51607187 ( 2) CTCATAAAA 1 chr15:58038597-58039097 ( 57) GCAGTAAAA 1 chr12:65606270-65606770 ( 21) CTCATAAAA 1 chr10:35890236-35890736 ( 15) CTCATAAAA 1 chr11:72308465-72308965 ( 34) GCAGTAAAA 1 chr1:52955572-52956072 ( 56) GCAGTAAAA 1 chr10:125633458-12563395 ( 13) CTCATAAAA 1 chr6:16754787-16755287 ( 30) CTCATAAAA 1 chr2:109261151-109261651 ( 53) GCAGTAAAA 1 chr6:137665268-137665768 ( 61) GCTATAAAG 1 chr5:125485025-125485525 ( 68) GCTATAAAG 1 chr4:147768088-147768588 ( 37) GTAATAAAG 1 chr14:76486250-76486750 ( 20) GTAATAAAG 1 chr10:121819030-12181953 ( 60) GCTATAAAG 1 chr4:173252322-173252822 ( 50) CCAATAAAT 1 chr11:15370652-15371152 ( 14) GTAATAAAG 1 chr6:1850783-1851283 ( 25) GTAATAAAG 1 chr6:167829440-167829940 ( 79) GTTATAAAA 1 chr3:16482918-16483418 ( 45) GTAATAAAT 1 chr13:37046921-37047421 ( 66) GCTATAAAT 1 chr5:90547962-90548462 ( 82) GTAATAAAT 1 chr1:234700146-234700646 ( 69) GTAATAAAT 1 chr13:99677542-99678042 ( 64) GCTATAAAT 1 chr4:128393055-128393555 ( 73) GCTATAAAT 1 chr10:72098722-72099222 ( 63) GCTATAAAT 1 chr9:1458392-1458892 ( 62) GTCATAAAT 1 chr1:85274861-85275361 ( 86) CCAGTAAAA 1 chr15:70494072-70494572 ( 4) GCAGTAAAT 1 chr20:57579945-57580445 ( 68) GCCGTAAAT 1 chr10:99519974-99520474 ( 77) GCGATAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55108 bayes= 10.5952 E= 2.8e-009 -1348 57 174 -1348 -1348 176 -1348 2 80 65 -456 -89 165 -1348 -139 -1348 -1348 -1348 -1348 177 177 -1348 -1348 -1348 177 -1348 -1348 -1348 177 -1348 -1348 -1348 120 -1348 -39 -81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 114 E= 2.8e-009 0.000000 0.307018 0.692982 0.000000 0.000000 0.701754 0.000000 0.298246 0.508772 0.324561 0.008772 0.157895 0.921053 0.000000 0.078947 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.675439 0.000000 0.157895 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMATAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [GC][CT][AC]ATAAAA -------------------------------------------------------------------------------- Time 1537.12 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 width = 50 sites = 4 llr = 212 E-value = 1.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 Description -------------------------------------------------------------------------------- Simplified A a:83::::a::::::5:::::8a:::::3a8:3:a:::::8::::8::3: pos.-specific C :3:::3:a:33:a3:::33:33::5aa:::3388::8:::::::3::::: probability G :::8:::::88::::5a8:3:::a:::::::::3:3:::8:a::83:::: matrix T :83:a8a::::a:8a:::888:::5::a8::8:::83aa33:aa::aa8a bits 2.3 * * * * ** * 2.0 * * * * ** * 1.8 * * *** ** * * ** *** * * ** *** ** * 1.6 * * *** ** * * ** *** * * ** *** ** * Relative 1.4 * ** ******* * ** ** *** * *** **** **** ** * Entropy 1.1 ** ************ ******** *** *********** ******* * (76.5 bits) 0.9 ************************************************** 0.7 ************************************************** 0.5 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel ATAGTTTCAGGTCTTAGGTTTAAGCCCTTAATCCATCTTGAGTTGATTTT consensus CTA C CC C G CCGCC T A CCAG GT TT CG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr2:156781572-156782072 - 4 5.77e-29 TAGAATTTTT ATAGTTTCAGGTCTTAGGTTTAAGTCCTTAATCCATCTTGAGTTGATTTT TGT chr5:59303262-59303762 + 51 2.73e-28 ctaaaatttc atagtttcacgtcttaggtttaagcccttaatccatcttgagttgatttt chr1:223518464-223518964 - 4 5.00e-27 TAGAATTTTT ATAGTTTCAGGTCTTGGGCTTAAGTCCTTAATCCATTTTGAGTTGATTTT TGT chr1:59077972-59078472 + 42 1.79e-20 AGCTGAGATA ACTATCTCAGCTCCTGGCTGCCAGCCCTAACCAGAGCTTTTGTTCGTTAT CTTCCCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:156781572-156782072 5.8e-29 3_[-6]_47 chr5:59303262-59303762 2.7e-28 50_[+6] chr1:223518464-223518964 5e-27 3_[-6]_47 chr1:59077972-59078472 1.8e-20 41_[+6]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT width=50 seqs=4 chr2:156781572-156782072 ( 4) ATAGTTTCAGGTCTTAGGTTTAAGTCCTTAATCCATCTTGAGTTGATTTT 1 chr5:59303262-59303762 ( 51) ATAGTTTCACGTCTTAGGTTTAAGCCCTTAATCCATCTTGAGTTGATTTT 1 chr1:223518464-223518964 ( 4) ATAGTTTCAGGTCTTGGGCTTAAGTCCTTAATCCATTTTGAGTTGATTTT 1 chr1:59077972-59078472 ( 42) ACTATCTCAGCTCCTGGCTGCCAGCCCTAACCAGAGCTTTTGTTCGTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30549 bayes= 12.8986 E= 1.7e-007 177 -865 -865 -865 -865 27 -865 135 135 -865 -865 -23 -23 -865 186 -865 -865 -865 -865 177 -865 27 -865 135 -865 -865 -865 177 -865 227 -865 -865 177 -865 -865 -865 -865 27 186 -865 -865 27 186 -865 -865 -865 -865 177 -865 227 -865 -865 -865 27 -865 135 -865 -865 -865 177 77 -865 127 -865 -865 -865 227 -865 -865 27 186 -865 -865 27 -865 135 -865 -865 27 135 -865 27 -865 135 135 27 -865 -865 177 -865 -865 -865 -865 -865 227 -865 -865 127 -865 77 -865 227 -865 -865 -865 227 -865 -865 -865 -865 -865 177 -23 -865 -865 135 177 -865 -865 -865 135 27 -865 -865 -865 27 -865 135 -23 186 -865 -865 -865 186 27 -865 177 -865 -865 -865 -865 -865 27 135 -865 186 -865 -23 -865 -865 -865 177 -865 -865 -865 177 -865 -865 186 -23 135 -865 -865 -23 -865 -865 227 -865 -865 -865 -865 177 -865 -865 -865 177 -865 27 186 -865 135 -865 27 -865 -865 -865 -865 177 -865 -865 -865 177 -23 -865 -865 135 -865 -865 -865 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 4 E= 1.7e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.750000 0.000000 0.000000 0.250000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.750000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.750000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT MEME-6 regular expression -------------------------------------------------------------------------------- A[TC][AT][GA]T[TC]TCA[GC][GC]TC[TC]T[AG]G[GC][TC][TG][TC][AC]AG[CT]CCT[TA]A[AC][TC][CA][CG]A[TG][CT]TT[GT][AT]GTT[GC][AG]TT[TA]T -------------------------------------------------------------------------------- Time 1817.76 secs. ******************************************************************************** ******************************************************************************** MOTIF ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 width = 50 sites = 6 llr = 227 E-value = 1.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 Description -------------------------------------------------------------------------------- Simplified A 8::372a:2a:a:7a2837:3:2:27:::7:::22735:22:a2538:8: pos.-specific C ::3::8::2:2:3::2:3::222252:22:833:23:::2::::::2a23 probability G ::7:2::a2::::3:::::22::2:23823::2:7::5::2::25::::5 matrix T 2a:72:::5:8:7::7233838773:7:7:2758::7:a77a:7:7:::2 bits 2.3 * * 2.0 * * 1.8 * ** * * * * ** * 1.6 * *** * * * * * * ** * Relative 1.4 ** *** * * * * * * ** * Entropy 1.1 *** *** *** * * * * * * * * ** *** (54.7 bits) 0.9 **** *** ****** * ** * ** *** ****** ** ***** 0.7 ******** ******** ** *** ******* ***************** 0.5 ******** *********** ***************************** 0.2 ******************** ***************************** 0.0 -------------------------------------------------- Multilevel ATGTACAGTATATAATAAATATTTCATGTACTTTGATATTTTATATACAG consensus CA CG CT T T G G CC CAG GA C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chrUn_KI270467v1:2670-31 + 26 8.38e-24 ttgatatttt atgtacagtatacaatatatatttcaggtactgtgatattttatatacac tatataataa chrUn_KI270466v1:188-688 + 26 2.36e-23 ttgatattgt atgtacagtacataatacatattttgtgtactttgatattttatgtacag catataatat chrUn_KI270467v1:2000-25 + 33 7.94e-23 ttgagatttt atgtacagaatataatatatctttcatgtaccttcatattttatgtacag tatacaatat chr8:37360450-37360950 - 48 3.80e-16 TTC ATCAGCAGCATATGAATCTTTTAGCCGGCACTCTGCTGTCATATAAACAG TGTAATTTCA chr1:182175310-182175810 + 40 6.78e-16 GAGAACAAGG ATCAacagtatacgacaatggtttaatgggctctgcagttgtaaaaccct ggatggttct chr2:24540019-24540519 - 37 7.22e-15 CCACTTGTTT TTGTTAAGGATATAATAAATTCCCTATCTGTCTAAAAGTATTAGGTACAC ATTTTAGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:2670-31 8.4e-24 25_[+7]_25 chrUn_KI270466v1:188-688 2.4e-23 25_[+7]_25 chrUn_KI270467v1:2000-25 7.9e-23 32_[+7]_18 chr8:37360450-37360950 3.8e-16 47_[-7]_3 chr1:182175310-182175810 6.8e-16 39_[+7]_11 chr2:24540019-24540519 7.2e-15 36_[-7]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS width=50 seqs=6 chrUn_KI270467v1:2670-31 ( 26) ATGTACAGTATACAATATATATTTCAGGTACTGTGATATTTTATATACAC 1 chrUn_KI270466v1:188-688 ( 26) ATGTACAGTACATAATACATATTTTGTGTACTTTGATATTTTATGTACAG 1 chrUn_KI270467v1:2000-25 ( 33) ATGTACAGAATATAATATATCTTTCATGTACCTTCATATTTTATGTACAG 1 chr8:37360450-37360950 ( 48) ATCAGCAGCATATGAATCTTTTAGCCGGCACTCTGCTGTCATATAAACAG 1 chr1:182175310-182175810 ( 40) ATCAACAGTATACGACAATGGTTTAATGGGCTCTGCAGTTGTAAAACCCT 1 chr2:24540019-24540519 ( 37) TTGTTAAGGATATAATAAATTCCCTATCTGTCTAAAAGTATTAGGTACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30549 bayes= 11.0908 E= 1.1e-002 151 -923 -923 -81 -923 -923 -923 177 -923 69 169 -923 18 -923 -923 118 118 -923 -31 -81 -81 201 -923 -923 177 -923 -923 -923 -923 -923 227 -923 -81 -31 -31 77 177 -923 -923 -923 -923 -31 -923 151 177 -923 -923 -923 -923 69 -923 118 118 -923 69 -923 177 -923 -923 -923 -81 -31 -923 118 151 -923 -923 -81 18 69 -923 18 118 -923 -923 18 -923 -923 -31 151 18 -31 -31 18 -923 -31 -923 151 -81 -31 -923 118 -923 -31 -31 118 -81 127 -923 18 118 -31 -31 -923 -923 -923 69 118 -923 -31 201 -923 -923 -31 -31 118 118 -923 69 -923 -923 201 -923 -81 -923 69 -923 118 -923 69 -31 77 -81 -923 -923 151 -81 -31 169 -923 118 69 -923 -923 18 -923 -923 118 77 -923 127 -923 -923 -923 -923 177 -81 -31 -923 118 -81 -923 -31 118 -923 -923 -923 177 177 -923 -923 -923 -81 -923 -31 118 77 -923 127 -923 18 -923 -923 118 151 -31 -923 -923 -923 227 -923 -923 151 -31 -923 -923 -923 69 127 -81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 6 E= 1.1e-002 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 0.666667 0.000000 0.166667 0.166667 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.166667 0.166667 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.000000 0.666667 0.833333 0.000000 0.000000 0.166667 0.333333 0.333333 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.166667 0.833333 0.333333 0.166667 0.166667 0.333333 0.000000 0.166667 0.000000 0.833333 0.166667 0.166667 0.000000 0.666667 0.000000 0.166667 0.166667 0.666667 0.166667 0.500000 0.000000 0.333333 0.666667 0.166667 0.166667 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.166667 0.666667 0.666667 0.000000 0.333333 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.166667 0.500000 0.166667 0.000000 0.000000 0.833333 0.166667 0.166667 0.666667 0.000000 0.666667 0.333333 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.166667 0.000000 0.666667 0.166667 0.000000 0.166667 0.666667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.166667 0.666667 0.500000 0.000000 0.500000 0.000000 0.333333 0.000000 0.000000 0.666667 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.333333 0.500000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS MEME-7 regular expression -------------------------------------------------------------------------------- AT[GC][TA]ACAGTATA[TC][AG]ATA[ACT][AT]T[AT]TTT[CT]A[TG]GT[AG]C[TC][TC]TG[AC][TA][AG]TTTTAT[AG][TA]ACA[GC] -------------------------------------------------------------------------------- Time 2094.52 secs. ******************************************************************************** ******************************************************************************** MOTIF RTAAAWCTGTCA MEME-8 width = 12 sites = 30 llr = 337 E-value = 3.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 Description -------------------------------------------------------------------------------- Simplified A 6:7a953:1::9 pos.-specific C :2::::7:::a1 probability G 3:::::1:9::: matrix T 183:14:a:a:: bits 2.3 * 2.0 * 1.8 * **** 1.6 * **** Relative 1.4 * ***** Entropy 1.1 * ** ***** (16.2 bits) 0.9 **** ****** 0.7 ***** ****** 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel ATAAAACTGTCA consensus G T TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr6:143755252-143755752 - 31 1.41e-07 GTTAATTCAT ATAAAACTGTCA GGAACTTTTT chr2:55843194-55843694 + 57 1.41e-07 ACCAAGGACT ATAAAACTGTCA AGATCTGGGG chr3:172140650-172141150 + 48 1.41e-07 AAACCCTTAG ATAAAACTGTCA CCCAATGTTG chr12:106074939-10607543 + 58 3.82e-07 GCCTCTCCCA GTAAAACTGTCA TTGCCACTGA chr16:77409263-77409763 - 75 4.82e-07 GTTCTCCATT GTAAATCTGTCA GCCTTGGCTG chr4:19823713-19824213 + 77 6.23e-07 gtgtaatagc attaaactgtca gacctgagtg chr5:126000449-126000949 - 82 6.23e-07 CCATGTT ATTAAACTGTCA ACATACATTA chr22:42964959-42965459 - 83 7.64e-07 GCAAAC ATTAATCTGTCA CTGTAGATTG chr8:37637880-37638380 + 3 1.46e-06 TC ATAAATATGTCA CAAGTGGAAT chr10:126247489-12624798 + 24 1.70e-06 TTTGGTAATA GTAAAAATGTCA GCCATGAATA chr12:54033461-54033961 + 35 2.26e-06 TCAATGGCTC GTAAAACTGTCC ACTAAAAGGC chr18:74861053-74861553 + 68 2.33e-06 CAGACAGTGT GTAAATCTGTCC ATGCAAAAAT chr1:80403329-80403829 + 81 2.81e-06 CCTTTATCTC TTAAAACTGTCA TTTTAATT chr2:31008532-31009032 - 39 2.81e-06 TTATTATGCC ATTAAAATGTCA CATTTGAAGA chr10:121310106-12131060 + 41 3.73e-06 TGGACTGACC ACTAAACTGTCA CCTCATATCG chr6:133248608-133249108 + 24 3.73e-06 GCAAACCTCA ATAAACCTGTCA AGAACGGCAA chr4:89847611-89848111 - 18 3.73e-06 AGAGTGTTCA ATAATTCTGTCA TTGAAAAGTG chr3:61634650-61635150 + 14 4.21e-06 TTTTGCCAGT GTAATACTGTCA CAACACTGTT chr21:35585875-35586375 + 51 4.21e-06 TTACTGAGAA ATAAATGTGTCA GCAGAACCAT chr14:36955972-36956472 - 36 4.21e-06 GGGAAAGGAT ATAAATGTGTCA GTATTCGGGG chr12:58925043-58925543 + 62 4.76e-06 TAATAGAGGT GCTAAACTGTCA GTTTTAACAT chr8:37547855-37548355 - 36 5.08e-06 CAGCTTTGAA GCTAATCTGTCA CTAATGCCTG chr10:7311240-7311740 + 26 6.57e-06 AACTTGGCTA ATAAATCTATCA CATCCTCCAT chr17:17958279-17958779 - 51 7.27e-06 GCATGGGGTA GTAAGTCTGTCA TTTTAATGGA chr3:169526186-169526686 + 51 8.21e-06 AGTGTGAGCA ACAAATCTGTCC ACTGATTCAT chr10:75379151-75379651 + 35 9.39e-06 CTTCGGATGG ATAATAATGTCA TTTGCTTGAT chr1:228781066-228781566 + 34 1.05e-05 GCTTTACTCG TTAAATATGTCA ACTCCCTGGG chr8:37380731-37381231 + 88 1.12e-05 AGACTGCAAA ACTAATATGTCA C chr22:24026697-24027197 - 82 1.18e-05 CAACATA GTAAAGATGTCA ATTTTCCCCC chr14:32134446-32134946 + 71 1.52e-05 CTTGTTTGAA ATAAAAATATCA TCACAATGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:143755252-143755752 1.4e-07 30_[-8]_58 chr2:55843194-55843694 1.4e-07 56_[+8]_32 chr3:172140650-172141150 1.4e-07 47_[+8]_41 chr12:106074939-10607543 3.8e-07 57_[+8]_31 chr16:77409263-77409763 4.8e-07 74_[-8]_14 chr4:19823713-19824213 6.2e-07 76_[+8]_12 chr5:126000449-126000949 6.2e-07 81_[-8]_7 chr22:42964959-42965459 7.6e-07 82_[-8]_6 chr8:37637880-37638380 1.5e-06 2_[+8]_86 chr10:126247489-12624798 1.7e-06 23_[+8]_65 chr12:54033461-54033961 2.3e-06 34_[+8]_54 chr18:74861053-74861553 2.3e-06 67_[+8]_21 chr1:80403329-80403829 2.8e-06 80_[+8]_8 chr2:31008532-31009032 2.8e-06 38_[-8]_50 chr10:121310106-12131060 3.7e-06 40_[+8]_48 chr6:133248608-133249108 3.7e-06 23_[+8]_65 chr4:89847611-89848111 3.7e-06 17_[-8]_71 chr3:61634650-61635150 4.2e-06 13_[+8]_75 chr21:35585875-35586375 4.2e-06 50_[+8]_38 chr14:36955972-36956472 4.2e-06 35_[-8]_53 chr12:58925043-58925543 4.8e-06 61_[+8]_27 chr8:37547855-37548355 5.1e-06 35_[-8]_53 chr10:7311240-7311740 6.6e-06 25_[+8]_63 chr17:17958279-17958779 7.3e-06 50_[-8]_38 chr3:169526186-169526686 8.2e-06 50_[+8]_38 chr10:75379151-75379651 9.4e-06 34_[+8]_54 chr1:228781066-228781566 1.1e-05 33_[+8]_55 chr8:37380731-37381231 1.1e-05 87_[+8]_1 chr22:24026697-24027197 1.2e-05 81_[-8]_7 chr14:32134446-32134946 1.5e-05 70_[+8]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTAAAWCTGTCA width=12 seqs=30 chr6:143755252-143755752 ( 31) ATAAAACTGTCA 1 chr2:55843194-55843694 ( 57) ATAAAACTGTCA 1 chr3:172140650-172141150 ( 48) ATAAAACTGTCA 1 chr12:106074939-10607543 ( 58) GTAAAACTGTCA 1 chr16:77409263-77409763 ( 75) GTAAATCTGTCA 1 chr4:19823713-19824213 ( 77) ATTAAACTGTCA 1 chr5:126000449-126000949 ( 82) ATTAAACTGTCA 1 chr22:42964959-42965459 ( 83) ATTAATCTGTCA 1 chr8:37637880-37638380 ( 3) ATAAATATGTCA 1 chr10:126247489-12624798 ( 24) GTAAAAATGTCA 1 chr12:54033461-54033961 ( 35) GTAAAACTGTCC 1 chr18:74861053-74861553 ( 68) GTAAATCTGTCC 1 chr1:80403329-80403829 ( 81) TTAAAACTGTCA 1 chr2:31008532-31009032 ( 39) ATTAAAATGTCA 1 chr10:121310106-12131060 ( 41) ACTAAACTGTCA 1 chr6:133248608-133249108 ( 24) ATAAACCTGTCA 1 chr4:89847611-89848111 ( 18) ATAATTCTGTCA 1 chr3:61634650-61635150 ( 14) GTAATACTGTCA 1 chr21:35585875-35586375 ( 51) ATAAATGTGTCA 1 chr14:36955972-36956472 ( 36) ATAAATGTGTCA 1 chr12:58925043-58925543 ( 62) GCTAAACTGTCA 1 chr8:37547855-37548355 ( 36) GCTAATCTGTCA 1 chr10:7311240-7311740 ( 26) ATAAATCTATCA 1 chr17:17958279-17958779 ( 51) GTAAGTCTGTCA 1 chr3:169526186-169526686 ( 51) ACAAATCTGTCC 1 chr10:75379151-75379651 ( 35) ATAATAATGTCA 1 chr1:228781066-228781566 ( 34) TTAAATATGTCA 1 chr8:37380731-37381231 ( 88) ACTAATATGTCA 1 chr22:24026697-24027197 ( 82) GTAAAGATGTCA 1 chr14:32134446-32134946 ( 71) ATAAAAATATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53311 bayes= 11.469 E= 3.7e-002 103 -1155 69 -214 -1155 -31 -1155 151 132 -1155 -1155 -14 177 -1155 -1155 -1155 156 -1155 -263 -155 77 -263 -263 56 -14 169 -163 -1155 -1155 -1155 -1155 177 -214 -1155 217 -1155 -1155 -1155 -1155 177 -1155 227 -1155 -1155 162 -105 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 30 E= 3.7e-002 0.600000 0.000000 0.333333 0.066667 0.000000 0.166667 0.000000 0.833333 0.733333 0.000000 0.000000 0.266667 1.000000 0.000000 0.000000 0.000000 0.866667 0.000000 0.033333 0.100000 0.500000 0.033333 0.033333 0.433333 0.266667 0.666667 0.066667 0.000000 0.000000 0.000000 0.000000 1.000000 0.066667 0.000000 0.933333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAWCTGTCA MEME-8 regular expression -------------------------------------------------------------------------------- [AG]T[AT]AA[AT][CA]TGTCA -------------------------------------------------------------------------------- Time 2370.22 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 width = 43 sites = 6 llr = 208 E-value = 5.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 Description -------------------------------------------------------------------------------- Simplified A 328::a88238:72a7:755:3:5aa::5:::732a:82:::2 pos.-specific C :::32:2:2:22::::3:2:2:2::::7382:227:8::3:88 probability G 782::::2:5:7:::3:3:3:722::832:2:252:::82a:: matrix T :::78:::72:238::7:328:73::2::27a::::22:5:2: bits 2.3 * 2.0 * 1.8 * * ** * * * 1.6 * * * *** * * ** * *** Relative 1.4 * * * **** * * ** * *** Entropy 1.1 *** **** * ** ** **** * * **** *** (49.9 bits) 0.9 ******** ******** ** **** * * ***** *** 0.7 ********* ******** *** **** ********** *** 0.5 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GGATTAAATGAGATAATAAATGTAAAGCACTTAGCACAGTGCC consensus A C A T GCGTG A T GC A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr6:89144362-89144862 + 58 2.33e-19 tttgctgtga ggattaaatgagttaacaaatgctaagcccttggaacagtgcc chr3:194350325-194350825 + 20 1.68e-18 gatgataaat aggctaaataagatagtaaatagaaagcccttaacacagcgcc tggcacatac chr15:70494072-70494572 - 22 7.57e-17 GTTGTCAGGA GGATTAAATGAGATAATGCTCATTAAGGGCTTAACACAGGGCA CGACCTCAAG chr7:135716570-135717070 + 49 4.39e-16 ccttcacgga ggattaagttatatagtgtgtgtaaatgacctcccacagtgcc tggcatatg chr17:73575403-73575903 + 24 8.95e-16 gtggtgatca ggattaaacgagttaatatgtgtaaagcatgtaggattgcgtc tggcacttgg chr9:18976681-18977181 + 34 8.43e-15 CGACCCCACA AAACCACAAACCAAaacaaatgtgaagcacttagcacaatgcc tggctcacgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:89144362-89144862 2.3e-19 57_[+9] chr3:194350325-194350825 1.7e-18 19_[+9]_38 chr15:70494072-70494572 7.6e-17 21_[-9]_36 chr7:135716570-135717070 4.4e-16 48_[+9]_9 chr17:73575403-73575903 9e-16 23_[+9]_34 chr9:18976681-18977181 8.4e-15 33_[+9]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC width=43 seqs=6 chr6:89144362-89144862 ( 58) GGATTAAATGAGTTAACAAATGCTAAGCCCTTGGAACAGTGCC 1 chr3:194350325-194350825 ( 20) AGGCTAAATAAGATAGTAAATAGAAAGCCCTTAACACAGCGCC 1 chr15:70494072-70494572 ( 22) GGATTAAATGAGATAATGCTCATTAAGGGCTTAACACAGGGCA 1 chr7:135716570-135717070 ( 49) GGATTAAGTTATATAGTGTGTGTAAATGACCTCCCACAGTGCC 1 chr17:73575403-73575903 ( 24) GGATTAAACGAGTTAATATGTGTAAAGCATGTAGGATTGCGTC 1 chr9:18976681-18977181 ( 34) AAACCACAAACCAAAACAAATGTGAAGCACTTAGCACAATGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34742 bayes= 12.1581 E= 5.8e-002 18 -923 169 -923 -81 -923 201 -923 151 -923 -31 -923 -923 69 -923 118 -923 -31 -923 151 177 -923 -923 -923 151 -31 -923 -923 151 -923 -31 -923 -81 -31 -923 118 18 -923 127 -81 151 -31 -923 -923 -923 -31 169 -81 118 -923 -923 18 -81 -923 -923 151 177 -923 -923 -923 118 -923 69 -923 -923 69 -923 118 118 -923 69 -923 77 -31 -923 18 77 -923 69 -81 -923 -31 -923 151 18 -923 169 -923 -923 -31 -31 118 77 -923 -31 18 177 -923 -923 -923 177 -923 -923 -923 -923 -923 201 -81 -923 169 69 -923 77 69 -31 -923 -923 201 -923 -81 -923 -31 -31 118 -923 -923 -923 177 118 -31 -31 -923 18 -31 127 -923 -81 169 -31 -923 177 -923 -923 -923 -923 201 -923 -81 151 -923 -923 -81 -81 -923 201 -923 -923 69 -31 77 -923 -923 227 -923 -923 201 -923 -81 -81 201 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 6 E= 5.8e-002 0.333333 0.000000 0.666667 0.000000 0.166667 0.000000 0.833333 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.166667 0.000000 0.833333 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.166667 0.000000 0.666667 0.333333 0.000000 0.500000 0.166667 0.833333 0.166667 0.000000 0.000000 0.000000 0.166667 0.666667 0.166667 0.666667 0.000000 0.000000 0.333333 0.166667 0.000000 0.000000 0.833333 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.333333 0.000000 0.666667 0.666667 0.000000 0.333333 0.000000 0.500000 0.166667 0.000000 0.333333 0.500000 0.000000 0.333333 0.166667 0.000000 0.166667 0.000000 0.833333 0.333333 0.000000 0.666667 0.000000 0.000000 0.166667 0.166667 0.666667 0.500000 0.000000 0.166667 0.333333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.666667 0.333333 0.000000 0.500000 0.333333 0.166667 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.166667 0.666667 0.000000 0.000000 0.000000 1.000000 0.666667 0.166667 0.166667 0.000000 0.333333 0.166667 0.500000 0.000000 0.166667 0.666667 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.166667 0.000000 0.833333 0.000000 0.000000 0.333333 0.166667 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.166667 0.833333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC MEME-9 regular expression -------------------------------------------------------------------------------- [GA]GA[TC]TAAAT[GA]AG[AT]TA[AG][TC][AG][AT][AG]T[GA]T[AT]AAG[CG][AC]CTTA[GA]CACAG[TC]GCC -------------------------------------------------------------------------------- Time 2639.93 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGTCA MEME-10 width = 7 sites = 43 llr = 414 E-value = 1.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::a:::a pos.-specific C :::::a: probability G :a:a::: matrix T a:::a:: bits 2.3 * * * 2.0 * * * 1.8 ******* 1.6 ******* Relative 1.4 ******* Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 ------- Multilevel TGAGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------- chr19:40920945-40921445 + 52 6.54e-05 GGGTAAACAC TGAGTCA CTGTGTGTAA chr16:15590842-15591342 + 75 6.54e-05 cttgaaacag tgagtca gatcctgtta chr12:114914221-11491472 + 33 6.54e-05 TATGATCCAG TGAGTCA TATCGCTCCA chrX:38061242-38061742 + 72 6.54e-05 AGAGATGAGA TGAGTCA GAAGGTGACT chr3:190972921-190973421 + 29 6.54e-05 cccaaattcc tgagtca cagaaactat chr5:125485025-125485525 - 85 6.54e-05 CCATTCGTG TGAGTCA CGGAGTGACT chr6:115485321-115485821 - 26 6.54e-05 GAGCCTCTTG TGAGTCA ATCTTAGCAA chr17:3890061-3890561 - 77 6.54e-05 GTAGCTGTGC TGAGTCA GGCAACAGCC chr22:24727032-24727532 + 75 6.54e-05 GTTTTCCAAA TGAGTCA TTTGtaatta chr9:1458392-1458892 + 82 6.54e-05 ACTTGGTGGC TGAGTCA TGAGGAAAAA chr21:33136827-33137327 - 22 6.54e-05 TTAGACATCA TGAGTCA AAGTTAATTT chr10:87586149-87586649 + 40 6.54e-05 aatgtagcca tgagtca taagaccttc chr10:63707202-63707702 + 40 6.54e-05 AGGTAGTAAA TGAGTCA TTTTCCAGCA chr21:34845670-34846170 + 29 6.54e-05 TAACACAGAA TGAGTCA AACAGTATTA chr22:40711465-40711965 + 38 6.54e-05 tacagagaca tgagtca tcgagaggct chr7:51606687-51607187 - 25 6.54e-05 TTAATAGGAA TGAGTCA ATACTCATAA chr10:15704514-15705014 - 42 6.54e-05 TTTATGTCAG TGAGTCA CCTTCCTGAG chr4:185912727-185913227 - 77 6.54e-05 CTATTTTCCA TGAGTCA TTCTTTGAAT chr10:72097731-72098231 - 7 6.54e-05 GAATCACTTG TGAGTCA GGAGCC chr20:51934170-51934670 - 82 6.54e-05 CATGCACCTC TGAGTCA CTTTGTATTG chr1:41870101-41870601 + 30 6.54e-05 ccccctagta tgagtca cattcgactt chr12:58925043-58925543 - 34 6.54e-05 TTTTTATCGG TGAGTCA CTGGCCTTGC chr12:71626706-71627206 + 58 6.54e-05 ACTCAGTAAA TGAGTCA GAAAAGAAAA chr1:62311546-62312046 + 17 6.54e-05 AATTACCCGA TGAGTCA GCCGTGTGTG chr6:138088174-138088674 - 26 6.54e-05 TTCGTGATAA TGAGTCA TCATATAATC chr1:58779925-58780425 - 37 6.54e-05 AACCACTAAT TGAGTCA GGGCTGTTTG chr1:228902969-228903469 + 59 6.54e-05 CCAATCCTCA TGAGTCA ACCAGAGAGC chr15:58332055-58332555 - 87 6.54e-05 GGAGTGG TGAGTCA CGCTTCGTCA chrX:24145691-24146191 - 82 6.54e-05 GCTTTTTACA TGAGTCA TTAGTCGAAC chr15:70507800-70508300 + 6 6.54e-05 tagta tgagtca ggcacagcaa chr5:123157658-123158158 + 59 6.54e-05 GCTATCTTTA TGAGTCA TCCAACCACA chr8:105090167-105090667 + 90 6.54e-05 CACAAGACTG TGAGTCA GTCA chr17:67978478-67978978 - 82 6.54e-05 ATCTAATGTA TGAGTCA TTTTCTTGCT chr1:179930918-179931418 + 84 6.54e-05 gcctgcacaa tgagtca gtgatagaat chr16:77409263-77409763 - 57 6.54e-05 CCTTGGCTGT TGAGTCA GCTACTGCGA chr2:175805423-175805923 + 82 6.54e-05 tcaataaatg tgagtca tCCTCGTTAA chr5:174371579-174372079 + 15 6.54e-05 CTTTAGAGAA TGAGTCA TTTGGTCGTT chr5:34608752-34609252 + 48 6.54e-05 GGCCAATTAC TGAGTCA GCCACACACT chr10:114525338-11452583 - 49 6.54e-05 AAAGGCTTGT TGAGTCA CTGCGTACTT chr13:51638390-51638890 + 55 6.54e-05 CTATGCTGTG TGAGTCA Gaaaatgctg chr1:85297832-85298332 - 75 6.54e-05 TCCATTTAAA TGAGTCA TACCATTAAG chr1:234700146-234700646 - 54 6.54e-05 ATAATGCCTC TGAGTCA TCCATTAACC chr10:89861901-89862401 - 7 6.54e-05 ATAAGTGGCA TGAGTCA TCCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40920945-40921445 6.5e-05 51_[+10]_42 chr16:15590842-15591342 6.5e-05 74_[+10]_19 chr12:114914221-11491472 6.5e-05 32_[+10]_61 chrX:38061242-38061742 6.5e-05 71_[+10]_22 chr3:190972921-190973421 6.5e-05 28_[+10]_65 chr5:125485025-125485525 6.5e-05 84_[-10]_9 chr6:115485321-115485821 6.5e-05 25_[-10]_68 chr17:3890061-3890561 6.5e-05 76_[-10]_17 chr22:24727032-24727532 6.5e-05 74_[+10]_19 chr9:1458392-1458892 6.5e-05 81_[+10]_12 chr21:33136827-33137327 6.5e-05 21_[-10]_72 chr10:87586149-87586649 6.5e-05 39_[+10]_54 chr10:63707202-63707702 6.5e-05 39_[+10]_54 chr21:34845670-34846170 6.5e-05 28_[+10]_65 chr22:40711465-40711965 6.5e-05 37_[+10]_56 chr7:51606687-51607187 6.5e-05 24_[-10]_69 chr10:15704514-15705014 6.5e-05 41_[-10]_52 chr4:185912727-185913227 6.5e-05 76_[-10]_17 chr10:72097731-72098231 6.5e-05 6_[-10]_87 chr20:51934170-51934670 6.5e-05 81_[-10]_12 chr1:41870101-41870601 6.5e-05 29_[+10]_64 chr12:58925043-58925543 6.5e-05 33_[-10]_60 chr12:71626706-71627206 6.5e-05 57_[+10]_36 chr1:62311546-62312046 6.5e-05 16_[+10]_77 chr6:138088174-138088674 6.5e-05 25_[-10]_68 chr1:58779925-58780425 6.5e-05 36_[-10]_57 chr1:228902969-228903469 6.5e-05 58_[+10]_35 chr15:58332055-58332555 6.5e-05 86_[-10]_7 chrX:24145691-24146191 6.5e-05 81_[-10]_12 chr15:70507800-70508300 6.5e-05 5_[+10]_88 chr5:123157658-123158158 6.5e-05 58_[+10]_35 chr8:105090167-105090667 6.5e-05 89_[+10]_4 chr17:67978478-67978978 6.5e-05 81_[-10]_12 chr1:179930918-179931418 6.5e-05 83_[+10]_10 chr16:77409263-77409763 6.5e-05 56_[-10]_37 chr2:175805423-175805923 6.5e-05 81_[+10]_12 chr5:174371579-174372079 6.5e-05 14_[+10]_79 chr5:34608752-34609252 6.5e-05 47_[+10]_46 chr10:114525338-11452583 6.5e-05 48_[-10]_45 chr13:51638390-51638890 6.5e-05 54_[+10]_39 chr1:85297832-85298332 6.5e-05 74_[-10]_19 chr1:234700146-234700646 6.5e-05 53_[-10]_40 chr10:89861901-89862401 6.5e-05 6_[-10]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGTCA width=7 seqs=43 chr19:40920945-40921445 ( 52) TGAGTCA 1 chr16:15590842-15591342 ( 75) TGAGTCA 1 chr12:114914221-11491472 ( 33) TGAGTCA 1 chrX:38061242-38061742 ( 72) TGAGTCA 1 chr3:190972921-190973421 ( 29) TGAGTCA 1 chr5:125485025-125485525 ( 85) TGAGTCA 1 chr6:115485321-115485821 ( 26) TGAGTCA 1 chr17:3890061-3890561 ( 77) TGAGTCA 1 chr22:24727032-24727532 ( 75) TGAGTCA 1 chr9:1458392-1458892 ( 82) TGAGTCA 1 chr21:33136827-33137327 ( 22) TGAGTCA 1 chr10:87586149-87586649 ( 40) TGAGTCA 1 chr10:63707202-63707702 ( 40) TGAGTCA 1 chr21:34845670-34846170 ( 29) TGAGTCA 1 chr22:40711465-40711965 ( 38) TGAGTCA 1 chr7:51606687-51607187 ( 25) TGAGTCA 1 chr10:15704514-15705014 ( 42) TGAGTCA 1 chr4:185912727-185913227 ( 77) TGAGTCA 1 chr10:72097731-72098231 ( 7) TGAGTCA 1 chr20:51934170-51934670 ( 82) TGAGTCA 1 chr1:41870101-41870601 ( 30) TGAGTCA 1 chr12:58925043-58925543 ( 34) TGAGTCA 1 chr12:71626706-71627206 ( 58) TGAGTCA 1 chr1:62311546-62312046 ( 17) TGAGTCA 1 chr6:138088174-138088674 ( 26) TGAGTCA 1 chr1:58779925-58780425 ( 37) TGAGTCA 1 chr1:228902969-228903469 ( 59) TGAGTCA 1 chr15:58332055-58332555 ( 87) TGAGTCA 1 chrX:24145691-24146191 ( 82) TGAGTCA 1 chr15:70507800-70508300 ( 6) TGAGTCA 1 chr5:123157658-123158158 ( 59) TGAGTCA 1 chr8:105090167-105090667 ( 90) TGAGTCA 1 chr17:67978478-67978978 ( 82) TGAGTCA 1 chr1:179930918-179931418 ( 84) TGAGTCA 1 chr16:77409263-77409763 ( 57) TGAGTCA 1 chr2:175805423-175805923 ( 82) TGAGTCA 1 chr5:174371579-174372079 ( 15) TGAGTCA 1 chr5:34608752-34609252 ( 48) TGAGTCA 1 chr10:114525338-11452583 ( 49) TGAGTCA 1 chr13:51638390-51638890 ( 55) TGAGTCA 1 chr1:85297832-85298332 ( 75) TGAGTCA 1 chr1:234700146-234700646 ( 54) TGAGTCA 1 chr10:89861901-89862401 ( 7) TGAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 56306 bayes= 10.6842 E= 1.6e-001 -1207 -1207 -1207 177 -1207 -1207 227 -1207 177 -1207 -1207 -1207 -1207 -1207 227 -1207 -1207 -1207 -1207 177 -1207 227 -1207 -1207 177 -1207 -1207 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 1.6e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-10 regular expression -------------------------------------------------------------------------------- TGAGTCA -------------------------------------------------------------------------------- Time 2911.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:92331201-92331701 1.19e-02 3_[-1(3.69e-05)]_48 chr13:112213419-11221391 9.43e-02 56_[-3(2.73e-05)]_35 chr1:231037946-231038446 8.54e-02 68_[+2(3.40e-06)]_20 chr5:124742196-124742696 5.65e-01 100 chr2:178484552-178485052 9.07e-01 100 chr6:124822064-124822564 1.56e-01 54_[+5(7.74e-05)]_37 chr19:2983984-2984484 8.57e-01 100 chr3:44995225-44995725 4.88e-01 5_[-2(1.75e-05)]_83 chr19:32398352-32398852 1.52e-22 4_[+4(6.60e-05)]_[-1(7.43e-25)]_25 chr1:59261502-59262002 9.47e-03 88_[-3(5.36e-06)]_3 chr15:36925631-36926131 9.24e-03 36_[+3(1.57e-05)]_19_[+5(5.59e-05)]_\ 27 chr4:23818163-23818663 4.02e-03 16_[-5(7.94e-06)]_25_[+3(1.98e-06)]_\ 41 chr7:21941523-21942023 9.09e-01 100 chr17:27915608-27916108 1.52e-01 60_[+3(3.38e-06)]_31 chr20:41059184-41059684 2.89e-18 24_[-1(1.51e-26)]_27 chr17:40325030-40325530 9.93e-19 21_[-1(7.53e-27)]_30 chr19:34234636-34235136 5.81e-22 [-4(4.51e-05)]_7_[+1(9.21e-26)]_22 chr5:174503806-174504306 7.69e-01 100 chr1:16120929-16121429 1.06e-04 [+9(1.56e-08)]_57 chrX:136046983-136047483 1.65e-01 55_[-2(3.86e-05)]_33 chr10:121831742-12183224 4.47e-02 35_[-2(2.40e-06)]_53 chr4:156959197-156959697 1.09e-02 17_[-5(1.36e-05)]_74 chr17:32298891-32299391 4.97e-02 100 chr5:88243455-88243955 7.11e-01 100 chr1:24043447-24043947 6.40e-12 56_[+2(7.56e-06)]_2_[+4(2.62e-13)]_\ 8 chr10:72098722-72099222 2.65e-02 56_[-8(2.82e-07)]_32 chr15:55825189-55825689 3.62e-03 44_[-7(6.30e-05)]_6 chr4:156815648-156816148 8.57e-01 100 chr7:100264548-100265048 1.38e-02 30_[-4(2.82e-05)]_48 chr12:51405731-51406231 3.69e-02 11_[+5(1.36e-05)]_66_[-2(7.52e-05)]_\ 2 chr11:123213185-12321368 5.33e-03 38_[-5(7.94e-06)]_44_[+3(1.29e-05)] chr10:74256039-74256539 7.63e-01 100 chr2:109261151-109261651 1.87e-02 28_[+2(1.75e-05)]_60 chr5:139489857-139490357 6.53e-25 26_[+1(1.51e-26)]_[+4(1.06e-10)]_3 chr5:82387250-82387750 4.23e-02 100 chr10:89861901-89862401 6.11e-01 6_[-10(6.54e-05)]_87 chr4:128393055-128393555 1.03e-01 66_[-8(1.62e-05)]_22 chr8:28258758-28259258 1.78e-01 100 chr6:129183828-129184328 1.04e-02 65_[+2(3.40e-06)]_23 chr22:38606503-38607003 6.82e-01 100 chr2:23921179-23921679 4.83e-01 100 chr12:106074939-10607543 4.65e-04 57_[+8(3.82e-07)]_31 chr12:108822716-10882321 2.62e-01 100 chr2:100005014-100005514 1.54e-04 68_[-2(6.93e-07)]_20 chr13:99677542-99678042 1.62e-02 100 chr10:87761898-87762398 4.70e-01 100 chr12:89769185-89769685 1.60e-03 13_[+3(1.98e-06)]_9_[-5(5.59e-05)]_\ 60 chr15:96053095-96053595 6.07e-04 28_[+7(1.60e-05)]_8_[-3(3.54e-05)]_\ 5 chr10:10989646-10990146 1.03e-01 56_[-2(1.46e-06)]_32 chr1:234700146-234700646 7.87e-03 53_[-10(6.54e-05)]_40 chr13:39148456-39148956 2.48e-02 100 chr4:38150223-38150723 1.02e-02 13_[-2(1.51e-05)]_75 chr22:18020690-18021190 7.82e-27 2_[-4(1.85e-12)]_6_[-1(5.36e-26)]_\ 21 chr11:131998015-13199851 1.91e-01 29_[-5(2.71e-05)]_62 chr5:16889671-16890171 5.41e-01 100 chr2:212299957-212300457 2.16e-01 100 chr18:494175-494675 2.11e-01 100 chr10:20958712-20959212 8.50e-03 33_[-2(3.86e-05)]_55 chr12:38890022-38890522 5.74e-01 100 chr1:175841774-175842274 1.31e-01 26_[+2(5.98e-06)]_62 chr5:32157746-32158246 1.30e-19 31_[-1(8.51e-24)]_20 chr20:25252784-25253284 8.10e-02 50_[-5(7.94e-06)]_41 chr1:182175310-182175810 1.03e-10 39_[+7(6.78e-16)]_11 chr3:31165433-31165933 2.23e-02 100 chr1:225654693-225655193 4.52e-19 24_[-1(7.63e-21)]_27 chr1:85297832-85298332 1.75e-02 74_[-10(6.54e-05)]_19 chr10:26524157-26524657 6.75e-02 46_[-2(1.51e-05)]_42 chr6:1850783-1851283 3.91e-02 100 chr10:33271916-33272416 1.52e-01 100 chr7:26534950-26535450 4.46e-02 58_[+5(2.71e-05)]_3_[+5(7.94e-06)]_\ 21 chr3:193970364-193970864 2.25e-19 26_[-1(7.53e-27)]_25 chr2:138177637-138178137 4.10e-02 41_[+1(2.65e-05)]_10 chr5:175385676-175386176 5.13e-04 23_[-2(5.98e-06)]_27_[-3(3.15e-05)]_\ 29 chr6:16757291-16757791 1.26e-01 100 chr7:92534571-92535071 1.18e-01 20_[-3(4.79e-05)]_71 chr1:145740173-145740673 1.38e-01 100 chr8:50056573-50057073 1.85e-01 51_[-3(8.16e-06)]_40 chr20:46085114-46085614 8.06e-02 22_[+2(3.86e-05)]_66 chr11:15370652-15371152 6.97e-02 100 chr13:20814580-20815080 1.85e-01 100 chr10:126247489-12624798 5.85e-03 23_[+8(1.70e-06)]_65 chr12:107380062-10738056 1.40e-01 70_[+2(5.37e-05)]_18 chr11:92868163-92868663 4.19e-03 30_[+2(7.52e-05)]_[-3(3.15e-05)]_49 chr15:69591895-69592395 5.27e-01 21_[-2(2.10e-05)]_67 chr3:189458457-189458957 6.92e-01 100 chr9:23731384-23731884 5.28e-01 100 chr6:16754787-16755287 2.16e-01 100 chr10:74833360-74833860 6.28e-01 100 chr4:20337249-20337749 7.33e-02 77_[-4(5.10e-05)]_1 chr5:59317174-59317674 4.33e-02 58_[-3(1.15e-05)]_15_[-5(5.59e-05)]_\ 9 chr10:125633458-12563395 4.72e-01 100 chr2:223815123-223815623 6.56e-01 100 chr11:117019298-11701979 2.66e-01 100 chr2:196853408-196853908 3.55e-04 29_[+5(5.59e-05)]_62 chr1:38724121-38724621 1.01e-02 28_[-3(2.25e-05)]_6_[-2(3.42e-05)]_\ 1_[-5(3.27e-05)]_35 chr13:51638390-51638890 3.51e-03 54_[+10(6.54e-05)]_20_\ [-5(5.59e-05)]_10 chr10:12448713-12449213 6.42e-02 21_[+7(1.70e-06)]_29 chr5:32367215-32367715 2.29e-11 33_[-1(4.48e-18)]_18 chr10:114525338-11452583 2.83e-01 48_[-10(6.54e-05)]_45 chr14:36955972-36956472 3.02e-03 15_[+2(6.73e-05)]_8_[-8(4.21e-06)]_\ 53 chr11:20070419-20070919 1.64e-01 33_[+2(7.56e-06)]_55 chr1:212596155-212596655 2.72e-02 34_[+2(9.10e-06)]_54 chr22:30195864-30196364 9.70e-01 100 chr5:124908916-124909416 2.27e-01 100 chr5:93677282-93677782 1.06e-01 100 chr15:70426337-70426837 8.93e-01 100 chr17:51650137-51650637 4.51e-01 100 chr6:116945718-116946218 6.93e-01 100 chr10:33325898-33326398 3.56e-01 13_[-3(3.15e-05)]_78 chr3:171790741-171791241 1.95e-01 100 chr9:86731438-86731938 2.23e-02 19_[+2(2.94e-05)]_69 chr5:69517658-69518158 3.58e-01 100 chr12:66319252-66319752 1.80e-02 2_[-4(6.15e-05)]_76 chr1:169942305-169942805 6.04e-02 1_[-2(1.46e-06)]_87 chr6:150403464-150403964 1.80e-01 100 chr2:206230212-206230712 1.47e-01 34_[-3(1.98e-06)]_57 chr3:17553997-17554497 5.44e-01 100 chr5:78050779-78051279 5.28e-01 100 chr3:123431512-123432012 5.78e-01 100 chr18:395716-396216 5.75e-02 16_[+3(1.98e-06)]_75 chr6:684067-684567 7.83e-01 34_[-2(4.83e-05)]_54 chr20:57579945-57580445 9.15e-02 44_[+6(4.35e-05)]_6 chr6:84362108-84362608 4.29e-02 21_[-5(1.36e-05)]_70 chr14:96888511-96889011 2.87e-01 59_[+3(8.16e-06)]_32 chr7:146655891-146656391 4.13e-01 4_[-4(6.45e-05)]_74 chr5:34608752-34609252 1.62e-01 47_[+10(6.54e-05)]_46 chr6:13006937-13007437 9.30e-04 28_[-5(3.27e-05)]_32_[-2(2.10e-05)]_\ 19 chr5:174371579-174372079 7.26e-02 14_[+10(6.54e-05)]_28_\ [+3(8.44e-05)]_42 chr2:48732937-48733437 1.60e-02 26_[-5(3.27e-05)]_65 chr12:66751643-66752143 2.22e-01 87_[-2(6.02e-05)]_1 chr8:17540093-17540593 3.30e-01 100 chr3:169542254-169542754 4.02e-01 100 chr1:219324930-219325430 4.72e-02 100 chr13:42071981-42072481 9.06e-01 100 chr15:70526426-70526926 3.08e-01 49_[+9(3.27e-05)]_8 chr17:43670017-43670517 2.14e-02 41_[-3(2.45e-05)]_50 chr10:72173640-72174140 1.00e+00 100 chr1:3419785-3420285 1.77e-01 39_[+2(2.94e-05)]_49 chr2:175805423-175805923 1.14e-03 13_[+9(4.38e-06)]_25_\ [+10(6.54e-05)]_12 chr8:71496063-71496563 2.73e-01 100 chr16:77409263-77409763 1.64e-02 14_[-8(7.63e-05)]_30_\ [-10(6.54e-05)]_11_[-8(4.82e-07)]_14 chr22:42964959-42965459 1.19e-02 82_[-8(7.64e-07)]_6 chr16:21820748-21821248 6.77e-23 29_[+1(4.97e-24)]_[+4(1.22e-11)] chr1:179930918-179931418 4.92e-02 83_[+10(6.54e-05)]_10 chr20:5582150-5582650 5.68e-02 100 chr1:237166697-237167197 4.21e-01 32_[+4(3.99e-05)]_46 chr3:140186383-140186883 1.69e-01 100 chr3:112090493-112090993 1.11e-01 100 chr17:67978478-67978978 2.17e-04 23_[+9(6.42e-05)]_15_\ [-10(6.54e-05)]_12 chr1:175470970-175471470 2.91e-01 100 chr6:16849338-16849838 8.70e-01 100 chr5:17326442-17326942 6.99e-01 100 chr11:115452199-11545269 6.35e-02 100 chr17:71163452-71163952 4.85e-02 8_[-2(3.42e-05)]_80 chr8:105090167-105090667 1.50e-01 89_[+10(6.54e-05)]_4 chr3:172140650-172141150 2.68e-03 2_[+2(9.10e-05)]_33_[+8(1.41e-07)]_\ 41 chr5:123157658-123158158 2.27e-01 58_[+10(6.54e-05)]_35 chr15:70507800-70508300 1.52e-01 5_[+10(6.54e-05)]_88 chr1:101288497-101288997 1.39e-01 32_[+3(7.23e-05)]_59 chrX:24145691-24146191 1.52e-03 1_[-9(3.50e-05)]_37_[-10(6.54e-05)]_\ 12 chr5:83097790-83098290 2.46e-02 3_[-5(7.94e-06)]_16_[-7(8.44e-05)]_\ 22 chr1:240515407-240515907 5.42e-01 100 chr5:99900439-99900939 6.71e-03 2_[+4(3.57e-05)]_33_[+2(1.08e-05)]_\ 31 chr5:127934854-127935354 4.90e-02 67_[+2(9.10e-06)]_21 chr4:8044644-8045144 6.40e-01 100 chr11:93986654-93987154 2.81e-01 35_[-7(5.18e-05)]_15 chr3:182365054-182365554 5.14e-01 100 chr21:36122964-36123464 2.94e-18 22_[-1(6.68e-24)]_29 chr19:31332880-31333380 1.66e-20 24_[-1(2.40e-25)]_27 chr5:125326104-125326604 5.87e-01 100 chr6:54879150-54879650 2.68e-02 26_[+3(5.36e-06)]_65 chr11:34222874-34223374 6.99e-01 100 chr1:52955572-52956072 1.35e-01 100 chr5:34598249-34598749 4.09e-01 100 chr16:80982534-80983034 7.20e-01 100 chr14:68140202-68140702 6.22e-01 100 chr11:32890783-32891283 1.11e-02 53_[-5(7.94e-06)]_38 chr18:74861053-74861553 7.72e-03 67_[+8(2.33e-06)]_21 chr3:156161124-156161624 2.24e-04 28_[+2(3.40e-06)]_60 chr5:77995984-77996484 9.27e-01 100 chr19:28520336-28520836 9.99e-02 100 chr11:72308465-72308965 2.91e-01 100 chr3:188272547-188273047 1.54e-01 52_[-2(9.10e-05)]_36 chr1:168801355-168801855 2.30e-01 100 chr10:2882566-2883066 2.15e-01 48_[-5(7.74e-05)]_43 chr15:71279078-71279578 8.94e-01 100 chr5:38782988-38783488 4.23e-01 52_[-2(4.34e-05)]_36 chr10:121500888-12150138 6.22e-01 100 chr5:5340244-5340744 8.61e-01 100 chr14:73125212-73125712 2.30e-01 100 chr2:188573438-188573938 1.06e-01 11_[+2(1.51e-05)]_77 chr2:109029732-109030232 6.51e-06 19_[+1(1.66e-12)]_32 chr1:184930564-184931064 1.64e-02 70_[-8(2.18e-05)]_18 chr5:107533909-107534409 3.81e-01 100 chr9:123687166-123687666 9.62e-01 100 chr6:108676484-108676984 6.94e-01 100 chr1:220918448-220918948 1.64e-01 10_[-2(9.89e-05)]_78 chr2:24540019-24540519 2.55e-09 36_[-7(7.22e-15)]_14 chr17:17958279-17958779 3.49e-02 50_[-8(7.27e-06)]_38 chr15:58332055-58332555 4.43e-01 86_[-10(6.54e-05)]_7 chr10:33388265-33388765 3.96e-03 11_[+4(6.15e-05)]_43_[-5(3.27e-05)]_\ 15 chr1:68384328-68384828 4.78e-01 100 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chr10:112793304-11279380 3.29e-02 64_[+2(1.75e-05)]_24 chr4:53943648-53944148 3.32e-03 41_[+3(8.16e-06)]_34_[-8(5.99e-05)]_\ 4 chr4:74202024-74202524 7.36e-01 100 chr6:52482906-52483406 4.55e-02 100 chr8:124077224-124077724 3.56e-01 44_[-5(7.94e-06)]_16_[+5(7.18e-05)]_\ 22 chr8:29126517-29127017 2.69e-03 33_[+3(3.38e-06)]_58 chr2:156781572-156782072 1.91e-20 3_[-6(5.77e-29)]_47 chr17:75105442-75105942 2.12e-02 100 chr1:16122829-16123329 8.68e-01 100 chr2:12303218-12303718 2.12e-02 63_[-2(7.56e-06)]_25 chr6:52243258-52243758 1.32e-01 10_[-2(2.10e-05)]_78 chr1:89719630-89720130 7.67e-01 100 chr7:70092355-70092855 6.74e-01 100 chr18:59455113-59455613 5.37e-01 100 chr9:1462599-1463099 5.97e-02 100 chr5:160008637-160009137 4.23e-21 13_[-1(1.51e-26)]_38 chr6:137853580-137854080 5.00e-01 100 chr10:77305597-77306097 1.57e-01 83_[+5(2.71e-05)]_8 chr10:87845974-87846474 1.25e-01 100 chr6:124487972-124488472 1.33e-02 33_[+1(9.72e-05)]_18 chr9:86943415-86943915 1.02e-01 100 chr1:47690356-47690856 5.10e-01 100 chr20:35319244-35319744 1.26e-02 43_[-8(5.55e-05)]_45 chr7:114653398-114653898 7.75e-01 100 chrX:24146292-24146792 2.73e-01 100 chr14:76486250-76486750 3.35e-01 100 chr7:70704760-70705260 2.62e-01 100 chr21:38990096-38990596 1.92e-02 11_[-6(3.38e-05)]_39 chr8:99323787-99324287 2.47e-01 100 chr10:126233697-12623419 2.60e-01 84_[-2(9.10e-06)]_4 chr9:127388333-127388833 1.13e-01 52_[-5(3.27e-05)]_39 chr11:110305460-11030596 3.86e-01 100 chr15:70494072-70494572 1.93e-08 21_[-9(7.57e-17)]_36 chrX:38060422-38060922 5.66e-01 100 chr22:27212593-27213093 4.49e-01 100 chr6:38974761-38975261 8.24e-01 100 chr17:71438632-71439132 1.86e-01 100 chr4:147768088-147768588 6.61e-01 100 chr5:34182251-34182751 2.68e-19 22_[-1(3.54e-26)]_29 chr10:7433224-7433724 6.72e-03 28_[-2(2.94e-05)]_7_[+3(1.15e-05)]_\ 44 chr12:41288155-41288655 7.03e-01 100 chr2:55843194-55843694 4.54e-03 56_[+8(1.41e-07)]_32 chr5:92552245-92552745 3.94e-01 100 chr15:66886245-66886745 2.09e-01 100 chr16:22728397-22728897 9.78e-01 100 chr18:50629032-50629532 1.27e-01 83_[-2(3.42e-05)]_5 chr1:167658652-167659152 4.24e-01 100 chr7:83267138-83267638 7.78e-03 22_[+1(1.06e-05)]_29 chr10:129440861-12944136 8.32e-02 13_[+5(7.18e-05)]_78 chr10:132700570-13270107 4.55e-01 100 chr1:61091491-61091991 5.58e-01 100 chr13:46674981-46675481 9.88e-02 52_[-2(4.83e-05)]_36 chr4:118327839-118328339 3.41e-01 100 chr4:111883490-111883990 8.13e-04 21_[+3(1.15e-05)]_46_[+2(7.52e-05)]_\ 12 chr13:37046921-37047421 7.06e-03 100 chr1:11178267-11178767 8.77e-01 100 chr11:88320062-88320562 6.27e-03 57_[-2(9.10e-06)]_31 chr10:12720331-12720831 8.32e-02 55_[-2(3.40e-06)]_33 chr7:27165479-27165979 4.30e-02 1_[-5(5.59e-05)]_90 chr10:129605969-12960646 5.00e-01 100 chr11:115476468-11547696 7.44e-01 100 chr21:29217784-29218284 2.37e-01 100 chr19:34218184-34218684 6.81e-02 100 chr6:115485321-115485821 4.11e-01 25_[-10(6.54e-05)]_68 chr13:21949769-21950269 9.73e-02 30_[+5(7.94e-06)]_61 chr5:174514895-174515395 6.68e-02 65_[-5(5.59e-05)]_26 chr10:126249961-12625046 8.77e-02 27_[-2(9.89e-05)]_61 chr5:125485025-125485525 1.76e-01 84_[-10(6.54e-05)]_9 chr11:32891506-32892006 1.22e-01 100 chr13:112346345-11234684 1.76e-01 100 chr18:42850138-42850638 1.89e-01 100 chr1:59077972-59078472 3.55e-12 41_[+6(1.79e-20)]_9 chr1:3403704-3404204 1.46e-01 88_[+2(1.75e-05)] chr8:37359521-37360021 2.18e-02 10_[-3(2.73e-05)]_41_[-5(2.15e-05)]_\ 31 chrX:136057527-136058027 1.92e-01 72_[+5(2.15e-05)]_19 chr17:61335987-61336487 8.92e-02 32_[+2(1.06e-06)]_56 chr10:22552784-22553284 1.86e-02 100 chr6:1667161-1667661 6.80e-02 84_[-2(9.10e-05)]_4 chr3:138833420-138833920 2.68e-01 100 chr8:37637880-37638380 1.33e-03 2_[+8(1.46e-06)]_86 chr5:124655900-124656400 8.07e-01 100 chr5:94469761-94470261 5.68e-01 100 chr3:190972921-190973421 4.63e-02 28_[+10(6.54e-05)]_65 chr1:201721118-201721618 1.34e-01 69_[-2(9.10e-05)]_19 chr1:59214665-59215165 1.86e-01 8_[-2(9.10e-05)]_80 chr12:54033461-54033961 6.20e-02 [+5(7.74e-05)]_25_[+8(2.26e-06)]_54 chr2:46481488-46481988 4.99e-03 64_[-5(2.15e-05)]_27 chr8:37547855-37548355 4.81e-03 35_[-8(5.08e-06)]_9_[+5(1.36e-05)]_\ 35 chr5:124734986-124735486 1.91e-01 33_[-4(6.95e-05)]_45 chr1:228781066-228781566 9.49e-02 33_[+8(1.05e-05)]_55 chr6:137665268-137665768 2.04e-01 100 chrX:38061242-38061742 1.38e-01 71_[+10(6.54e-05)]_5_\ [-10(6.54e-05)]_10 chr8:37479291-37479791 9.19e-01 100 chr18:23684577-23685077 1.44e-01 42_[-2(9.89e-05)]_46 chr7:33669144-33669644 2.97e-02 57_[-2(7.52e-05)]_31 chr15:69143642-69144142 1.05e-02 41_[+2(2.10e-05)]_47 chr7:80876791-80877291 6.82e-01 100 chr12:54052075-54052575 9.99e-03 77_[-2(8.31e-05)]_11 chr2:31008532-31009032 1.05e-02 38_[-8(2.81e-06)]_50 chr10:44752840-44753340 2.35e-01 100 chr10:75613678-75614178 2.23e-01 100 chr5:17305870-17306370 9.76e-02 49_[+8(6.50e-05)]_39 chr5:74632108-74632608 2.10e-01 47_[+2(9.10e-05)]_41 chr10:50463970-50464470 1.20e-01 11_[-2(2.52e-05)]_77 chr1:229221437-229221937 2.51e-01 6_[-2(5.98e-06)]_82 chr5:6419268-6419768 3.66e-02 6_[-1(4.42e-05)]_45 chr15:59953466-59953966 3.46e-01 100 chr7:116218110-116218610 1.59e-01 100 chr4:80307274-80307774 6.75e-02 57_[+3(8.16e-06)]_34 chr6:2028605-2029105 2.00e-01 100 chr3:16482918-16483418 1.50e-04 17_[-3(4.79e-05)]_43_[-2(1.06e-06)]_\ 19 chr1:81126876-81127376 6.11e-01 100 chr3:42819882-42820382 1.58e-01 100 chr6:4320850-4321350 2.57e-02 18_[+2(1.08e-05)]_70 chr8:28445242-28445742 9.75e-01 100 chr1:8439096-8439596 5.22e-01 100 chr4:110904623-110905123 4.74e-03 53_[-3(3.38e-06)]_38 chr12:114914221-11491472 1.54e-01 32_[+10(6.54e-05)]_61 chr9:18976681-18977181 1.92e-09 33_[+9(8.43e-15)]_24 chr6:143755252-143755752 3.09e-03 30_[-8(1.41e-07)]_58 chr19:33293248-33293748 4.59e-02 100 chr7:135716570-135717070 3.56e-09 48_[+9(4.39e-16)]_9 chr1:215581871-215582371 2.72e-01 41_[+1(5.03e-05)]_10 chr15:67792459-67792959 3.00e-01 100 chr16:25049563-25050063 5.15e-02 100 chr5:175378372-175378872 3.06e-01 100 chr14:32134446-32134946 9.93e-03 70_[+8(1.52e-05)]_18 chr7:133492178-133492678 6.58e-02 30_[+1(1.34e-05)]_21 chr8:109611165-109611665 1.46e-03 51_[-4(4.45e-05)]_27 chr8:71355233-71355733 5.91e-02 43_[+2(4.51e-06)]_45 chr6:168147142-168147642 1.55e-02 100 chr16:15590842-15591342 5.39e-02 52_[-2(4.51e-06)]_10_\ [+10(6.54e-05)]_19 chr3:194350325-194350825 1.58e-11 19_[+9(1.68e-18)]_38 chr9:85743168-85743668 3.90e-01 100 chr10:75379151-75379651 1.62e-01 34_[+8(9.39e-06)]_54 chr1:81032869-81033369 1.57e-01 13_[-5(5.59e-05)]_78 chr3:17730413-17730913 2.45e-02 100 chr14:99821632-99822132 4.29e-01 100 chr5:69521066-69521566 1.67e-02 71_[-8(1.33e-05)]_17 chr8:25998475-25998975 3.04e-03 6_[+6(2.98e-05)]_44 chr20:53609851-53610351 7.25e-01 100 chr16:1271751-1272251 9.74e-01 100 chr1:80403329-80403829 5.68e-02 80_[+8(2.81e-06)]_8 chr1:86774466-86774966 8.05e-02 100 chr19:40920945-40921445 3.49e-03 38_[-2(9.10e-05)]_1_[+10(6.54e-05)]_\ 42 chr14:36835059-36835559 9.06e-01 100 chr10:72204287-72204787 5.12e-01 100 chr10:77287666-77288166 1.87e-01 100 chr17:34981743-34982243 8.68e-01 100 chr8:37360450-37360950 8.57e-11 15_[+5(8.30e-05)]_23_[-7(3.80e-16)]_\ 3 chr3:181328985-181329485 1.34e-01 31_[-5(3.27e-05)]_49_[+5(1.36e-05)]_\ 2 chr1:85274861-85275361 2.32e-01 100 chr5:124740931-124741431 3.54e-01 100 chr5:59303262-59303762 2.50e-19 50_[+6(2.73e-28)] chr8:37302614-37303114 3.08e-03 7_[+5(7.18e-05)]_36_[-4(6.78e-05)]_\ 26 chr6:82260170-82260670 3.61e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: indra ********************************************************************************