Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT | 49 | TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT |
TGTTTAYTTTKB | 12 | TGTTTATTTTGC |
CCTGCTGTG | 9 | CCTGCTGTG |
TGAGAYRGRGTYTYRCYCTGTY | 22 | TGAGACAGAGTCTTGCTCTGTC |
GCMATAAAA | 9 | GCAATAAAA |
ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT | 50 | ATAGTTTCAGGTCTTAGGTTTAAGTCCTTAATCCATCTTGAGTTGATTTT |
ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS | 50 | ATGTACAGTATATAATATATTTTTCATGTACTTTGATATTTTATATACAG |
RTAAAWCTGTCA | 12 | ATAAAACTGTCA |
RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC | 43 | GGATTAAATGAGATAATAAATGTAAAGCACTTAGCACAGTGCC |
TGAGTCA | 7 | TGAGTCA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.293 C 0.207 G 0.207 T 0.293
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
TGAGTCA | MEME-10 | chr18 | - | 395789 | 395795 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr18 | - | 395897 | 395903 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr18 | + | 396126 | 396132 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | + | 1458673 | 1458679 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | + | 1458740 | 1458746 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | - | 3890212 | 3890218 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | - | 3890337 | 3890343 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 5340558 | 5340564 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 12448848 | 12448854 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 13007106 | 13007112 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr16 | + | 15590994 | 15591000 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr16 | + | 15591116 | 15591122 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr10 | - | 15704755 | 15704761 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 16122919 | 16122925 | 6.54e-05 | 0.214 | Tgagtca |
TGAGTCA | MEME-10 | chr6 | - | 16849732 | 16849738 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr8 | - | 17540169 | 17540175 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | + | 17958636 | 17958642 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr22 | - | 18020990 | 18020996 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr22 | + | 18021001 | 18021007 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr20 | - | 20211593 | 20211599 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | - | 21941680 | 21941686 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chrX | - | 24145972 | 24145978 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr22 | + | 24727306 | 24727312 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr16 | - | 25049919 | 25049925 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr22 | - | 27213004 | 27213010 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr21 | - | 29217875 | 29217881 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr22 | - | 30196275 | 30196281 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr8 | - | 30254864 | 30254870 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr21 | - | 33137048 | 33137054 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 34598374 | 34598380 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 34608999 | 34609005 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 34609057 | 34609063 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr21 | + | 34845898 | 34845904 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 36424144 | 36424150 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr13 | + | 37047388 | 37047394 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chrX | + | 38061513 | 38061519 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chrX | - | 38061525 | 38061531 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 38783451 | 38783457 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr21 | - | 38990269 | 38990275 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr13 | + | 39148640 | 39148646 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr22 | + | 40711702 | 40711708 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr19 | + | 40920957 | 40920963 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr19 | + | 40921196 | 40921202 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr19 | + | 40921431 | 40921437 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 41870270 | 41870276 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 41870290 | 41870296 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr1 | + | 41870330 | 41870336 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr22 | + | 42965340 | 42965346 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr6 | + | 43322125 | 43322131 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr6 | - | 43322288 | 43322294 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 44752991 | 44752997 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | - | 44820640 | 44820646 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | - | 44820724 | 44820730 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr20 | + | 46085307 | 46085313 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr2 | + | 46481792 | 46481798 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr17 | - | 48577498 | 48577504 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr18 | + | 49656086 | 49656092 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr18 | + | 49656385 | 49656391 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr8 | + | 50057027 | 50057033 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr14 | + | 51581425 | 51581431 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | - | 51606878 | 51606884 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | - | 51606911 | 51606917 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr13 | + | 51638644 | 51638650 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr20 | - | 51934451 | 51934457 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr20 | - | 53611715 | 53611721 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr20 | - | 53899820 | 53899826 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr15 | - | 58332341 | 58332347 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 58780161 | 58780167 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr12 | - | 58925276 | 58925282 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 62311762 | 62311768 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 63707441 | 63707447 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 63707495 | 63707501 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 63707511 | 63707517 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 63707538 | 63707544 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr15 | + | 67792637 | 67792643 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | - | 67978759 | 67978765 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | - | 68381131 | 68381137 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 68384508 | 68384514 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr15 | - | 70426726 | 70426732 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr11 | - | 70483236 | 70483242 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr11 | - | 70483428 | 70483434 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr15 | + | 70508005 | 70508011 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr15 | + | 70526766 | 70526772 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | + | 70661458 | 70661464 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr17 | + | 71438963 | 71438969 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr12 | + | 71626963 | 71626969 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 72097780 | 72097786 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 72097937 | 72097943 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 72204400 | 72204406 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr14 | + | 73125383 | 73125389 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr5 | + | 74632307 | 74632313 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr14 | - | 76486393 | 76486399 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr16 | - | 77409519 | 77409525 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 78051076 | 78051082 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr3 | + | 78994649 | 78994655 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 80054297 | 80054303 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | + | 80877118 | 80877124 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | + | 82072184 | 82072190 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr6 | + | 82072424 | 82072430 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr6 | - | 82260496 | 82260502 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 85298106 | 85298112 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 85642891 | 85642897 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 85643173 | 85643179 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | + | 85743248 | 85743254 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | - | 86731806 | 86731812 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | + | 86732727 | 86732733 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | + | 86741523 | 86741529 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr13 | + | 87124148 | 87124154 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr10 | + | 87586388 | 87586394 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr10 | + | 87762025 | 87762031 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr12 | + | 89769310 | 89769316 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr12 | - | 89769327 | 89769333 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr12 | - | 89769483 | 89769489 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr4 | + | 89847716 | 89847722 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr10 | - | 89862107 | 89862113 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 89862207 | 89862213 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 89862247 | 89862253 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 90548290 | 90548296 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr14 | - | 91149558 | 91149564 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 91299662 | 91299668 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | - | 92534921 | 92534927 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr11 | - | 93986844 | 93986850 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr13 | - | 95289393 | 95289399 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr15 | + | 98896982 | 98896988 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr15 | - | 98897229 | 98897235 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 99900734 | 99900740 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr8 | + | 105090456 | 105090462 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr9 | - | 108477598 | 108477604 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr13 | + | 113493469 | 113493475 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | - | 114525586 | 114525592 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr12 | + | 114914453 | 114914459 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 115485546 | 115485552 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 115873623 | 115873629 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | + | 116218492 | 116218498 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr11 | - | 117019681 | 117019687 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 123157916 | 123157922 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | + | 124488143 | 124488149 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 124909082 | 124909088 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 125485309 | 125485315 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 126247581 | 126247587 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 127934903 | 127934909 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr4 | + | 128393371 | 128393377 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 129183887 | 129183893 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr10 | + | 132700958 | 132700964 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 133248706 | 133248712 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 133248943 | 133248949 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | - | 133492275 | 133492281 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr7 | - | 135716909 | 135716915 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chrX | + | 136047141 | 136047147 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chrX | - | 136047352 | 136047358 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 136730043 | 136730049 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 136730207 | 136730213 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | + | 137853734 | 137853740 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 138088399 | 138088405 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 145740354 | 145740360 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr6 | - | 149233600 | 149233606 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 167658711 | 167658717 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr1 | + | 168801516 | 168801522 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr4 | - | 173252519 | 173252525 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 174371793 | 174371799 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | - | 174503976 | 174503982 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr5 | + | 174515372 | 174515378 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 175471148 | 175471154 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr2 | + | 175805704 | 175805710 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr1 | + | 179931201 | 179931207 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr1 | + | 182175429 | 182175435 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr3 | - | 182365381 | 182365387 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr4 | - | 185913003 | 185913009 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr3 | + | 190973149 | 190973155 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr3 | + | 194135335 | 194135341 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 198763598 | 198763604 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 212596512 | 212596518 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 219273044 | 219273050 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 219279509 | 219279515 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 219325234 | 219325240 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 221394096 | 221394102 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 225654824 | 225654830 | 6.54e-05 | 0.214 | tgagtca |
TGAGTCA | MEME-10 | chr1 | + | 228903227 | 228903233 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 234700399 | 234700405 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | - | 234700532 | 234700538 | 6.54e-05 | 0.214 | TGAGTCA |
TGAGTCA | MEME-10 | chr1 | + | 244348060 | 244348066 | 6.54e-05 | 0.214 | TGAGTCA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_14 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TGAGTCA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_14 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.