Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
WTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT 49 TTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT
TGTTTAYTTTKB 12 TGTTTATTTTGC
CCTGCTGTG 9 CCTGCTGTG
TGAGAYRGRGTYTYRCYCTGTY 22 TGAGACAGAGTCTTGCTCTGTC
GCMATAAAA 9 GCAATAAAA
ATAGTTTCAGGTCTTRGGTTTAAGYCCTTAATCCATCTTGAGTTGATTTT 50 ATAGTTTCAGGTCTTAGGTTTAAGTCCTTAATCCATCTTGAGTTGATTTT
ATSWACAGTATAYRATAHWTNTTTYAKGTRCYYTGMWRTTTTATRWACAS 50 ATGTACAGTATATAATATATTTTTCATGTACTTTGATATTTTATATACAG
RTAAAWCTGTCA 12 ATAAAACTGTCA
RGAYTAAATRAGWTARYRWRTRTWAAGSMCTTARCACAGYGCC 43 GGATTAAATGAGATAATAAATGTAAAGCACTTAGCACAGTGCC
TGAGTCA 7 TGAGTCA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.293 C 0.207 G 0.207 T 0.293


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TGAGTCA MEME-10 chr18 - 395789 395795 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr18 - 395897 395903 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr18 + 396126 396132 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 + 1458673 1458679 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 + 1458740 1458746 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 - 3890212 3890218 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 - 3890337 3890343 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 5340558 5340564 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 12448848 12448854 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 13007106 13007112 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr16 + 15590994 15591000 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr16 + 15591116 15591122 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr10 - 15704755 15704761 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 16122919 16122925 6.54e-05 0.214 Tgagtca
TGAGTCA MEME-10 chr6 - 16849732 16849738 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr8 - 17540169 17540175 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 + 17958636 17958642 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr22 - 18020990 18020996 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr22 + 18021001 18021007 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr20 - 20211593 20211599 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 - 21941680 21941686 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chrX - 24145972 24145978 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr22 + 24727306 24727312 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr16 - 25049919 25049925 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr22 - 27213004 27213010 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr21 - 29217875 29217881 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr22 - 30196275 30196281 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr8 - 30254864 30254870 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr21 - 33137048 33137054 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 34598374 34598380 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 34608999 34609005 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 34609057 34609063 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr21 + 34845898 34845904 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 36424144 36424150 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr13 + 37047388 37047394 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chrX + 38061513 38061519 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chrX - 38061525 38061531 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 38783451 38783457 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr21 - 38990269 38990275 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr13 + 39148640 39148646 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr22 + 40711702 40711708 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr19 + 40920957 40920963 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr19 + 40921196 40921202 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr19 + 40921431 40921437 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 41870270 41870276 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 41870290 41870296 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr1 + 41870330 41870336 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr22 + 42965340 42965346 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr6 + 43322125 43322131 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr6 - 43322288 43322294 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 44752991 44752997 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 - 44820640 44820646 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 - 44820724 44820730 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr20 + 46085307 46085313 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr2 + 46481792 46481798 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr17 - 48577498 48577504 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr18 + 49656086 49656092 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr18 + 49656385 49656391 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr8 + 50057027 50057033 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr14 + 51581425 51581431 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 - 51606878 51606884 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 - 51606911 51606917 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr13 + 51638644 51638650 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr20 - 51934451 51934457 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr20 - 53611715 53611721 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr20 - 53899820 53899826 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr15 - 58332341 58332347 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 58780161 58780167 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr12 - 58925276 58925282 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 62311762 62311768 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 63707441 63707447 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 63707495 63707501 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 63707511 63707517 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 63707538 63707544 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr15 + 67792637 67792643 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 - 67978759 67978765 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 - 68381131 68381137 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 68384508 68384514 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr15 - 70426726 70426732 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr11 - 70483236 70483242 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr11 - 70483428 70483434 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr15 + 70508005 70508011 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr15 + 70526766 70526772 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 + 70661458 70661464 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr17 + 71438963 71438969 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr12 + 71626963 71626969 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 72097780 72097786 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 72097937 72097943 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 72204400 72204406 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr14 + 73125383 73125389 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr5 + 74632307 74632313 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr14 - 76486393 76486399 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr16 - 77409519 77409525 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 78051076 78051082 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr3 + 78994649 78994655 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 80054297 80054303 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 + 80877118 80877124 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 + 82072184 82072190 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr6 + 82072424 82072430 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr6 - 82260496 82260502 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 85298106 85298112 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 85642891 85642897 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 85643173 85643179 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 + 85743248 85743254 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 - 86731806 86731812 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 + 86732727 86732733 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 + 86741523 86741529 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr13 + 87124148 87124154 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr10 + 87586388 87586394 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr10 + 87762025 87762031 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr12 + 89769310 89769316 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr12 - 89769327 89769333 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr12 - 89769483 89769489 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr4 + 89847716 89847722 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr10 - 89862107 89862113 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 89862207 89862213 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 89862247 89862253 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 90548290 90548296 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr14 - 91149558 91149564 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 91299662 91299668 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 - 92534921 92534927 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr11 - 93986844 93986850 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr13 - 95289393 95289399 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr15 + 98896982 98896988 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr15 - 98897229 98897235 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 99900734 99900740 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr8 + 105090456 105090462 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr9 - 108477598 108477604 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr13 + 113493469 113493475 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 - 114525586 114525592 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr12 + 114914453 114914459 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 115485546 115485552 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 115873623 115873629 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 + 116218492 116218498 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr11 - 117019681 117019687 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 123157916 123157922 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 + 124488143 124488149 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 124909082 124909088 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 125485309 125485315 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 126247581 126247587 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 127934903 127934909 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr4 + 128393371 128393377 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 129183887 129183893 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr10 + 132700958 132700964 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 133248706 133248712 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 133248943 133248949 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 - 133492275 133492281 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr7 - 135716909 135716915 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chrX + 136047141 136047147 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chrX - 136047352 136047358 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 136730043 136730049 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 136730207 136730213 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 + 137853734 137853740 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 138088399 138088405 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 145740354 145740360 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr6 - 149233600 149233606 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 167658711 167658717 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr1 + 168801516 168801522 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr4 - 173252519 173252525 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 174371793 174371799 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 - 174503976 174503982 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr5 + 174515372 174515378 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 175471148 175471154 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr2 + 175805704 175805710 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr1 + 179931201 179931207 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr1 + 182175429 182175435 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr3 - 182365381 182365387 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr4 - 185913003 185913009 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr3 + 190973149 190973155 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr3 + 194135335 194135341 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 198763598 198763604 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 212596512 212596518 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 219273044 219273050 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 219279509 219279515 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 219325234 219325240 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 221394096 221394102 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 225654824 225654830 6.54e-05 0.214 tgagtca
TGAGTCA MEME-10 chr1 + 228903227 228903233 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 234700399 234700405 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 - 234700532 234700538 6.54e-05 0.214 TGAGTCA
TGAGTCA MEME-10 chr1 + 244348060 244348066 6.54e-05 0.214 TGAGTCA

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_14 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TGAGTCA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_14 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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