******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr13:98405162-98405662 1.0000 100 chr18:59516281-59516781 1.0000 100 chr12:54054305-54054805 1.0000 100 chr16:29943442-29943942 1.0000 100 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1.0000 100 chr13:37046921-37047421 1.0000 100 chr1:11178267-11178767 1.0000 100 chr11:88320062-88320562 1.0000 100 chr10:12720331-12720831 1.0000 100 chr7:27165479-27165979 1.0000 100 chr11:115476468-11547696 1.0000 100 chr6:115485321-115485821 1.0000 100 chr13:21949769-21950269 1.0000 100 chr10:126249961-12625046 1.0000 100 chr5:125485025-125485525 1.0000 100 chr1:59077972-59078472 1.0000 100 chr1:3403704-3404204 1.0000 100 chr8:37359521-37360021 1.0000 100 chrX:136057527-136058027 1.0000 100 chr10:22552784-22553284 1.0000 100 chr6:1667161-1667661 1.0000 100 chr3:138833420-138833920 1.0000 100 chr8:37637880-37638380 1.0000 100 chr5:124655900-124656400 1.0000 100 chr5:94469761-94470261 1.0000 100 chr3:190972921-190973421 1.0000 100 chr1:201721118-201721618 1.0000 100 chr1:59214665-59215165 1.0000 100 chr12:54033461-54033961 1.0000 100 chr8:37547855-37548355 1.0000 100 chr5:124734986-124735486 1.0000 100 chr1:228781066-228781566 1.0000 100 chr6:137665268-137665768 1.0000 100 chrX:38061242-38061742 1.0000 100 chr8:37479291-37479791 1.0000 100 chr7:33669144-33669644 1.0000 100 chr15:69143642-69144142 1.0000 100 chr7:80876791-80877291 1.0000 100 chr12:54052075-54052575 1.0000 100 chr2:31008532-31009032 1.0000 100 chr10:44752840-44753340 1.0000 100 chr10:75613678-75614178 1.0000 100 chr5:17305870-17306370 1.0000 100 chr5:74632108-74632608 1.0000 100 chr10:50463970-50464470 1.0000 100 chr1:229221437-229221937 1.0000 100 chr15:59953466-59953966 1.0000 100 chr7:116218110-116218610 1.0000 100 chr4:80307274-80307774 1.0000 100 chr6:2028605-2029105 1.0000 100 chr3:16482918-16483418 1.0000 100 chr1:81126876-81127376 1.0000 100 chr3:42819882-42820382 1.0000 100 chr8:28445242-28445742 1.0000 100 chr1:8439096-8439596 1.0000 100 chr4:110904623-110905123 1.0000 100 chr12:114914221-11491472 1.0000 100 chr9:18976681-18977181 1.0000 100 chr6:143755252-143755752 1.0000 100 chr19:33293248-33293748 1.0000 100 chr7:135716570-135717070 1.0000 100 chr1:215581871-215582371 1.0000 100 chr15:67792459-67792959 1.0000 100 chr16:25049563-25050063 1.0000 100 chr5:175378372-175378872 1.0000 100 chr14:32134446-32134946 1.0000 100 chr8:109611165-109611665 1.0000 100 chr8:71355233-71355733 1.0000 100 chr6:168147142-168147642 1.0000 100 chr3:194350325-194350825 1.0000 100 chr9:85743168-85743668 1.0000 100 chr10:75379151-75379651 1.0000 100 chr1:81032869-81033369 1.0000 100 chr3:17730413-17730913 1.0000 100 chr14:99821632-99822132 1.0000 100 chr20:53609851-53610351 1.0000 100 chr16:1271751-1272251 1.0000 100 chr1:80403329-80403829 1.0000 100 chr1:86774466-86774966 1.0000 100 chr19:40920945-40921445 1.0000 100 chr14:36835059-36835559 1.0000 100 chr10:72204287-72204787 1.0000 100 chr10:77287666-77288166 1.0000 100 chr17:34981743-34982243 1.0000 100 chr8:37360450-37360950 1.0000 100 chr3:181328985-181329485 1.0000 100 chr1:85274861-85275361 1.0000 100 chr5:124740931-124741431 1.0000 100 chr8:37302614-37303114 1.0000 100 chr6:82260170-82260670 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.289 C 0.211 G 0.211 T 0.289 ******************************************************************************** ******************************************************************************** MOTIF TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 width = 45 sites = 10 llr = 461 E-value = 3.8e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:9:::a:::a:::a:::a:::a:::a::1a::18::27::241 pos.-specific C 1:1:::::::::::::::1:::1:::1::::::1:::::111::: probability G ::1::11:::1:::1:::::::::::::1:::1::::::::1:11 matrix T 9981a99:aa9:aa9:aa9:aa9:aa9:9a9:9992aa8298858 bits 2.2 2.0 1.8 * *** *** *** *** *** * * * ** 1.6 * *** *** *** *** *** * * * ** Relative 1.3 ** ******************************** ** * Entropy 1.1 ** ************************************ * * (66.6 bits) 0.9 *************************************** *** * 0.7 ******************************************* * 0.4 ********************************************* 0.2 ********************************************* 0.0 --------------------------------------------- Multilevel TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTT consensus T AT AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------------------------- chr3:193970364-193970864 - 26 5.50e-25 CTCACTTTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTT ATTATACTTT chr5:160008637-160009137 - 21 1.10e-24 CGTTTCACTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTTTGA chr17:8093651-8094151 - 21 1.10e-24 ATTTGTTTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TATTCTTTGA chr14:102639265-10263976 + 37 1.10e-24 ttaattttta tttatttatttatttatttatttatttatttatttatttatttat ttattgagat chr18:48873513-48874013 + 26 8.31e-24 TTCTCTGTGa tttatttatttatttatttatttatttatttatttatttattttg agacggagtt chr17:49368172-49368672 - 14 4.86e-23 CTGGCATTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATCATT GAGGCGGAGT chr16:21820748-21821248 + 35 5.66e-23 CTTGACttta tttatttatttatttatttatttatttatttatttattttctttt gagaccgagt chr19:35881941-35882441 - 22 2.13e-21 TTGGATTTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTTTTATTTTTA TTTTTATTTT chr1:6404513-6405013 - 5 1.25e-20 CAGGTCATGT CACTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TTAT chr2:109029732-109030232 + 37 6.99e-15 TATCTCTGTA TTGATGGATTGATTGattcattcattcagtaagcatttactgagt gccAGTTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:193970364-193970864 5.5e-25 25_[-1]_30 chr5:160008637-160009137 1.1e-24 20_[-1]_35 chr17:8093651-8094151 1.1e-24 20_[-1]_35 chr14:102639265-10263976 1.1e-24 36_[+1]_19 chr18:48873513-48874013 8.3e-24 25_[+1]_30 chr17:49368172-49368672 4.9e-23 13_[-1]_42 chr16:21820748-21821248 5.7e-23 34_[+1]_21 chr19:35881941-35882441 2.1e-21 21_[-1]_34 chr1:6404513-6405013 1.2e-20 4_[-1]_51 chr2:109029732-109030232 7e-15 36_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT width=45 seqs=10 chr3:193970364-193970864 ( 26) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTT 1 chr5:160008637-160009137 ( 21) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT 1 chr17:8093651-8094151 ( 21) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT 1 chr14:102639265-10263976 ( 37) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT 1 chr18:48873513-48874013 ( 26) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTG 1 chr17:49368172-49368672 ( 14) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATCATT 1 chr16:21820748-21821248 ( 35) TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTCTTTT 1 chr19:35881941-35882441 ( 22) TTTATTTATTTATTTATTTATTTATTTATTTATTTTTTATTTTTA 1 chr1:6404513-6405013 ( 5) CACTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT 1 chr2:109029732-109030232 ( 37) TTGATGGATTGATTGATTCATTCATTCAGTAAGCATTTACTGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 45 n= 33600 bayes= 13.188 E= 3.8e-079 -997 -108 -997 164 -153 -997 -997 164 -997 -108 -108 147 164 -997 -997 -153 -997 -997 -997 179 -997 -997 -108 164 -997 -997 -108 164 179 -997 -997 -997 -997 -997 -997 179 -997 -997 -997 179 -997 -997 -108 164 179 -997 -997 -997 -997 -997 -997 179 -997 -997 -997 179 -997 -997 -108 164 179 -997 -997 -997 -997 -997 -997 179 -997 -997 -997 179 -997 -108 -997 164 179 -997 -997 -997 -997 -997 -997 179 -997 -997 -997 179 -997 -108 -997 164 179 -997 -997 -997 -997 -997 -997 179 -997 -997 -997 179 -997 -108 -997 164 179 -997 -997 -997 -997 -997 -108 164 -997 -997 -997 179 -153 -997 -997 164 179 -997 -997 -997 -997 -997 -108 164 -997 -108 -997 164 -153 -997 -997 164 147 -997 -997 -53 -997 -997 -997 179 -997 -997 -997 179 -53 -997 -997 147 128 -108 -997 -53 -997 -108 -997 164 -997 -108 -108 147 -53 -997 -997 147 47 -997 -108 79 -153 -997 -108 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 45 nsites= 10 E= 3.8e-079 0.000000 0.100000 0.000000 0.900000 0.100000 0.000000 0.000000 0.900000 0.000000 0.100000 0.100000 0.800000 0.900000 0.000000 0.000000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.100000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.100000 0.000000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.100000 0.000000 0.900000 0.100000 0.000000 0.000000 0.900000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.000000 0.800000 0.700000 0.100000 0.000000 0.200000 0.000000 0.100000 0.000000 0.900000 0.000000 0.100000 0.100000 0.800000 0.200000 0.000000 0.000000 0.800000 0.400000 0.000000 0.100000 0.500000 0.100000 0.000000 0.100000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 regular expression -------------------------------------------------------------------------------- TTTATTTATTTATTTATTTATTTATTTATTTATTT[AT]TT[TA][AT]TT[TA][TA]T -------------------------------------------------------------------------------- Time 419.75 secs. ******************************************************************************** ******************************************************************************** MOTIF WDTGTTTRTTTT MEME-2 width = 12 sites = 131 llr = 1145 E-value = 1.5e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 33:1:::6:2:3 pos.-specific C 22::::::311: probability G 1419:::3:1:: matrix T 429:aaa17787 bits 2.2 2.0 1.8 **** 1.6 **** Relative 1.3 ***** Entropy 1.1 ***** (12.6 bits) 0.9 ***** * ** 0.7 ******* ** 0.4 ********** 0.2 ********** 0.0 ------------ Multilevel TGTGTTTATTTT consensus AA GC A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr13:46674981-46675481 - 55 3.13e-07 GTTCTAACAG TGTGTTTGTTTT TACAGCTGCC chr2:188573438-188573938 + 10 3.13e-07 TGGGTTTTA TGTGTTTGTTTT GAGCTCAGAG chr11:20070419-20070919 + 32 3.13e-07 CAAACCAAGC TGTGTTTGTTTT TCTAGGGCAA chr2:109261151-109261651 + 23 3.13e-07 AGGATTAAAT TGTGTTTGTTTT CATTGTAATT chr7:2157574-2158074 + 25 6.26e-07 TGGCAGGAAG AGTGTTTATTTT CCAGAAGCCT chr3:16482918-16483418 - 72 9.87e-07 AGTACTCTGA AGTGTTTGTTTT GCCTTTCCTT chr1:229221437-229221937 - 9 1.12e-06 GAGGTTTTGC AGTGTTTACTTT CCAGTGAT chr5:136420522-136421022 + 28 2.08e-06 AAAGAAAGAG AGTGTTTGCTTT GGCTCAGGGC chr2:100005014-100005514 - 71 2.08e-06 AATTTACATG TTTGTTTATTTT GGAATTCAGT chr4:111883490-111883990 + 75 3.39e-06 ATGGTAAGAC TCTGTTTGTTTT CAGTAGGGCT chr12:806375-806875 + 26 3.39e-06 GTCATCAGGC AATGTTTATTTT GATATGACGT chr4:38150223-38150723 - 16 3.39e-06 ACAATTATGA AATGTTTATTTT CTTAGATCAG chr5:154334291-154334791 + 31 3.39e-06 GTCTTGTTAA TTTGTTTGTTTT TATTCCTTTC chr12:48021694-48022194 - 1 4.27e-06 TGGTTGTTAA TGTGTTTGTTTA chr5:59021114-59021614 - 4 4.27e-06 GCCCACTGAG TTTGTTTACTTT AGT chr15:69143642-69144142 + 40 5.30e-06 cactgtgata ggtgtttgtttt ataggcttga chr4:119730134-119730634 - 12 5.30e-06 AAACATTGTT TATGTTTGCTTT TGCCTGACTA chr17:48492589-48493089 + 18 5.30e-06 AGGCGGATTC AGTGTTTATTTA GGCTGAGAGC chr4:19823713-19824213 + 33 5.30e-06 tattataaaa catgtttatttt gggaaaggac chr3:156161124-156161624 + 27 5.30e-06 ATCTTTACCA CATGTTTATTTT TCTTGTTTCA chr2:205280600-205281100 + 71 5.30e-06 ATTTGGATGA AGTGTTTATTTA GTTTGCTGGC chr8:70181883-70182383 + 37 5.30e-06 GCTCTCCAAA TGTGTTTATCTT TTCAACATTA chr17:60371700-60372200 - 13 5.30e-06 TTTCTAGCAC AATGTTTGTTTT CCTTGGAGCT chr14:32308052-32308552 + 73 5.30e-06 gatctgtctc tATGTTTGCTTT GTCTAGCTGT chr6:11270217-11270717 - 64 6.61e-06 AAAGTGTCTG CTTGTTTATTTT AGGTAGATAA chr10:99519974-99520474 + 62 6.61e-06 CTAGGATAAT GGTGTTTACTTT ACCGCGATAA chr1:24043447-24043947 + 55 6.61e-06 ATTGTGCttt cttgtttatttt tttttgagac chr8:99114660-99115160 + 61 6.61e-06 ACACTGAAGT TGTGTTTATATT CCACTGATGT chr1:212596155-212596655 + 33 7.65e-06 ATGTTTTCCA ATTGTTTACTTT ATAACAATAA chr12:51405731-51406231 - 89 7.65e-06 . TGTGTTTGTCTT ATATATCTCC chr6:4109343-4109843 + 61 7.65e-06 GTGATCTGGC TGTGTTTGTCTT CTGTACAAAG chr8:109611165-109611665 - 74 8.70e-06 AAGTGGACTT AGTGTTTATCTT TATGGCAGGG chr10:50463970-50464470 - 18 8.70e-06 AGGATAATCT CTTGTTTGTTTT TATTGTGGTA chr12:122368386-12236888 - 61 8.70e-06 ACCTGGCCTC CATGTTTACTTT TTAAAATAAG chr5:83265170-83265670 - 1 8.70e-06 AAACCACCAC CATGTTTACTTT chr8:71355233-71355733 + 42 1.15e-05 TCCTGATGCA TGTGTTTACTCT GGCAAACTAC chr1:231037946-231038446 + 67 1.26e-05 ACCAAAGATG GCTGTTTATTTT TCTTGTGCTT chrX:136046983-136047483 - 58 1.46e-05 CTGTTAGGTT TCTGTTTGTTTA TTTGAAAACA chr5:88516295-88516795 - 70 1.69e-05 TGAAATTACA AGTGTTTACTCT GTATCCATGA chr16:12120436-12120936 + 34 1.69e-05 GCTGTGTGTC TGTGTTTATGTT TGGGTCCCTG chr6:8939605-8940105 + 12 1.69e-05 CGGGGTGACT GATGTTTACTTT GTTGATGGCC chr10:121831742-12183224 - 38 1.69e-05 GACTGTAATT TCTGTTTACTTA GGGATAAAGC chr17:27915608-27916108 - 1 1.69e-05 CCTGATTCGG GCTGTTTGTTTT chr17:66502797-66503297 + 67 1.69e-05 TAATCTTTAG AGTGTTTACTCT GTGCATTGGA chr5:127934854-127935354 + 66 1.90e-05 ACCCAGCTGA GGTGTTTGTTTA GGCTAATCCC chr3:172140650-172141150 + 1 1.90e-05 . tatgtttattct tatatttaca chr5:119328676-119329176 + 11 1.90e-05 ATGTCAGGCC TCTGTTTATATT CAGTTCAGTA chr10:12720331-12720831 - 58 2.20e-05 ACAATGAGTC TCTGTTTGCTTA GCTAAGATTA chr10:112793304-11279380 + 63 2.20e-05 CTCTCTTTTG TTTGTTTGTCTT GTGGAACATG chr10:72800366-72800866 - 85 2.20e-05 ACAG GATGTTTGCTTT TGTTATCAGT chr2:209495970-209496470 - 67 2.20e-05 CCAGCAAATC TATGTTTGTATT CCAAGCACTT chr15:88586310-88586810 - 34 2.20e-05 CTTGGTTTTA TGGGTTTGTTTT TACAGCCCCC chr1:59214665-59215165 - 11 2.88e-05 GACATTTCTG TGTGTTTGTATA ACATGAACTG chr1:3403704-3404204 + 87 2.88e-05 CAAGAGGGTC CGTGTTTTCTTT AC chr3:169526186-169526686 + 79 2.88e-05 TCATAAACCA CATGTTTACTTA AAGAAGCCTG chr1:228902969-228903469 + 24 2.88e-05 GCACCACTCC ACTGTTTATATT TGGTCATTTA chr10:7433224-7433724 - 31 3.23e-05 GCAGGAATGG CTTGTTTACTTA ATCTCTCTTT chr5:90547962-90548462 + 51 3.23e-05 GAATGAAGGA TTTGTTTGCCTT GTCTCCTCCC chr3:44995225-44995725 - 8 3.23e-05 TTACACTCAA AATGTTTACCTT TCCCTGA chr6:138036859-138037359 - 88 3.23e-05 A ATTGTTTATTCT TTCTTTGAAC chr12:107380062-10738056 + 69 3.60e-05 CCTTTGTTTC TTTGTTTGCATT CTTTTCCTTC chr17:8093651-8094151 - 67 3.60e-05 AATAGAGCTA TGTATTTGTTTT ATTTATTTAT chr1:201721118-201721618 - 72 4.06e-05 TCGAGGAGTG ACTGTTTACATT AAATTACTGG chr7:22548262-22548762 + 31 4.06e-05 tcttgaaaac tgtgtttgcata agagatttaa chr10:35890236-35890736 - 79 4.06e-05 CCTACTTTAT ATTGTTTGTTCT TCACTGAAGT chr14:99821632-99822132 + 82 4.43e-05 AGATAGCTAG AGTGTTTGTTCA CTCCCTA chr9:95721050-95721550 - 9 4.43e-05 TGATAAACCC TTTGTTTATGTT GCTGGTGA chrX:23944266-23944766 + 81 4.43e-05 GTATGATACT GATGTTTGTTTA TACTTCAT chr10:121500888-12150138 + 88 4.43e-05 ATTGGTATTC TCGGTTTATTTT C chr2:48732937-48733437 + 69 4.43e-05 TATTTTGGAG AGTGTTTACATA AAAGCTTCAG chr7:42091664-42092164 - 76 4.43e-05 CTCTTGCTAA ATTGTTTGCCTT TCTAATGAAG chr1:175841774-175842274 + 25 4.88e-05 TCACCATGGA GGTGTTTGCTCT GCTCTTAATG chr7:158615985-158616485 + 49 4.88e-05 gtactgtggc tgtgtttttatt tgatatctga chr5:92552245-92552745 + 88 5.37e-05 AAAATGTTCG GCTGTTTACTTA G chr5:99900439-99900939 + 56 5.37e-05 caatttgtga attgttttcttt tctactccat chr1:3419785-3420285 + 38 5.37e-05 AAATGAGCTG TGTGTTTTTTCT GTAATGAGAG chr7:40986333-40986833 - 26 5.37e-05 CCAATCCCGC ACTGTTTTCTTT TCATTTCAGT chr10:11685707-11686207 - 50 5.37e-05 CCTGGACTGG ATTGTTTTCTTT CCTTTTTAAG chr17:66570802-66571302 + 77 5.37e-05 GGGTTCTAAT CGTGTTTACATA TACTTCTTAA chr5:74632108-74632608 + 46 5.87e-05 TTTCAGAGCA TTTGTTTATTCA AGATTACTGA chr12:54052075-54052575 - 80 5.87e-05 ATAAAGTTA ACTGTTTATGTT TTATTTATTA chr5:125275307-125275807 + 48 5.87e-05 CAGGAATGTT ATGGTTTATTTT TCTGTATGAA chr7:25777831-25778331 + 10 5.87e-05 TGCTTAGGT TTTGTTTACGTT GCCATAAATT chr19:40920945-40921445 - 41 6.49e-05 ACAGTGACTC AGTGTTTACCCT GAGCCCAGAA chr7:27165479-27165979 + 56 6.49e-05 GCTCTACGAT GGGGTTTGTTTT AATTGTGGCC chr10:7311240-7311740 + 74 6.49e-05 CTAACCCACT TGGGTTTATCTT GATTGACTTA chr14:96574836-96575336 + 28 6.49e-05 gatgaggaaa caggtttatttt ggcagagtat chr8:71496063-71496563 + 55 6.49e-05 TAATCACAGT CAGGTTTATTTT TGTTGGCAGC chr1:169942305-169942805 - 4 6.49e-05 TCAGTTTAAT CTTGTTTTCTTT GCA chr16:29943442-29943942 - 38 6.49e-05 TCATCAGGGA CAGGTTTATTTT GAATAATAAA chr5:38782988-38783488 - 55 7.14e-05 TTTTAAGAGA ACTGTTTGTGTT GGCAGTGCTT chr14:36955972-36956472 + 14 7.14e-05 TGTGCATTTA TGTGTTTTCTCT CCCCGAATAC chr5:59649128-59649628 - 64 7.14e-05 GCCCTGCTGA CGTGTTTTTCTT ATCACCCAAG chr12:116718841-11671934 - 50 7.14e-05 AATCACCAGA CGTGTTTATTAT ACAAGCACAC chr6:90677333-90677833 - 19 7.14e-05 GAGTGAAGAT AATGTTTGTCTA CTGAGTGTGC chr17:2602506-2603006 + 26 7.14e-05 tggctcccTT TGTATTTATTta acaaatattt chr8:37517073-37517573 + 79 7.14e-05 CATTTTTCAA ACTGTTTGTGTT TTTTCTGGAT chr1:68217000-68217500 - 7 7.82e-05 GATTGTGAAA AGGGTTTGTTTA TAGTGT chr5:54302197-54302697 - 60 7.82e-05 TACAGTGCTG AGTGTTTTCCTT GGATCACCTA chr1:220918448-220918948 - 13 7.82e-05 CACAAGGTAA CATGTTTATATA CTCCATTGGA chr10:26524157-26524657 - 49 7.82e-05 ATAATTTGTT GTTGTTTTTTTT TCATCATCAA chr21:33971505-33972005 + 2 7.82e-05 c tctgtttactca ttttatgact chr3:24365188-24365688 - 11 7.82e-05 AAAGCTTTAG TTTATTTGTTTT TATAAAGTCC chr10:126249961-12625046 - 30 8.53e-05 TCCTTGAGTC CCTGTTTATATA CTCTGGGATT chr20:5582150-5582650 - 69 9.37e-05 ATTAGGTATA TATGTTTATGTA TGGTAGAAAT chr6:1667161-1667661 - 87 1.02e-04 AT GGTGTTTATACT GAGCTTAAAT chr1:168801355-168801855 + 61 1.02e-04 tctatgaAGC AATGTTTATTGT ATTTAACATT chr16:25049563-25050063 - 5 1.10e-04 GGCTGCACGG TAGGTTTGTTTA CACC chr6:125050688-125051188 - 53 1.10e-04 TAACACACAC TTTGTTTACACT GGCGTCTATC chr10:75593192-75593692 + 22 1.10e-04 AATGATTGAG TCTGTTTGTTAT ACCTTTGTGG chr6:56529579-56530079 - 50 1.20e-04 TAGTTTTATT TATGTTTTCATT TTTATTTGTC chr17:17958279-17958779 + 3 1.20e-04 AA TGTATTTACCTT CATGAGGCTG chr15:70507800-70508300 + 32 1.20e-04 aatagggtgt cttgtttactca cagtggcctt chr5:125277476-125277976 + 14 1.20e-04 TTCCCCCATT CTTATTTGTTTT TCTCTGACTA chr5:82387250-82387750 - 56 1.30e-04 ATACCTTGTT TGTGTTTATCAT TGTTATCTTT chr7:80760236-80760736 + 39 1.30e-04 TACTTGGGAA AATGTTTGTTAT GCACCATACA chr11:126153926-12615442 + 61 1.30e-04 CAGCTAATGA CTTGTTTATTGT CAGAGCAGCA chr14:68140202-68140702 - 64 1.40e-04 GGTAACATTT ACTGTTTACTGT AGCTGTGGTT chr3:169657253-169657753 + 38 1.40e-04 ACACAATGAG TTTATTTATTTA GAAACTTGTT chr4:71111077-71111577 + 86 1.40e-04 CTTCTTAATC TCTAtttattta ttt chr6:161586823-161587323 - 63 1.40e-04 TTAATCTGAG AGTGTTTTTATA AACTGATTTG chr11:95521037-95521537 + 81 1.49e-04 TCCACCTAGT GCTATTTATTTT TGTTCTCT chr3:17730413-17730913 - 49 1.60e-04 AAACAACAGT AATATTTATTTA CTCATGATTT chr5:17305870-17306370 - 74 1.60e-04 GAATCTCTAA TTTATTTGTTTA ACACGCAACT chr6:91299548-91300048 - 63 1.72e-04 GGGTGGCTAT TATATTTATATT GGTTTAAACT chr17:77543004-77543504 + 50 1.83e-04 TGATCACTGT CATATTTATTTA GGAAGAGGTG chr4:185914645-185915145 + 13 1.97e-04 ATAGTGCTGA AATGTTTATACA CAATCAATTT chr3:71102096-71102596 + 82 2.26e-04 ATATCCATGC TATGTTTATAAT AGTTTGC chr3:77191644-77192144 - 64 2.42e-04 TGTTATTTAT AATGTTTATCGT TCTCTCGCCA chr10:73966183-73966683 - 47 2.59e-04 GAACATTATC TGTGTTTAATTA CATTCGCTAA chr9:23731384-23731884 + 65 2.76e-04 TGTATACATG TAAGTTTATTTT AGACGAGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:46674981-46675481 3.1e-07 54_[-2]_34 chr2:188573438-188573938 3.1e-07 9_[+2]_79 chr11:20070419-20070919 3.1e-07 31_[+2]_57 chr2:109261151-109261651 3.1e-07 22_[+2]_66 chr7:2157574-2158074 6.3e-07 24_[+2]_64 chr3:16482918-16483418 9.9e-07 71_[-2]_17 chr1:229221437-229221937 1.1e-06 8_[-2]_80 chr5:136420522-136421022 2.1e-06 27_[+2]_61 chr2:100005014-100005514 2.1e-06 70_[-2]_18 chr4:111883490-111883990 3.4e-06 74_[+2]_14 chr12:806375-806875 3.4e-06 25_[+2]_63 chr4:38150223-38150723 3.4e-06 15_[-2]_73 chr5:154334291-154334791 3.4e-06 30_[+2]_58 chr12:48021694-48022194 4.3e-06 [-2]_88 chr5:59021114-59021614 4.3e-06 3_[-2]_85 chr15:69143642-69144142 5.3e-06 39_[+2]_49 chr4:119730134-119730634 5.3e-06 11_[-2]_77 chr17:48492589-48493089 5.3e-06 17_[+2]_71 chr4:19823713-19824213 5.3e-06 32_[+2]_56 chr3:156161124-156161624 5.3e-06 26_[+2]_62 chr2:205280600-205281100 5.3e-06 70_[+2]_18 chr8:70181883-70182383 5.3e-06 36_[+2]_52 chr17:60371700-60372200 5.3e-06 12_[-2]_76 chr14:32308052-32308552 5.3e-06 72_[+2]_16 chr6:11270217-11270717 6.6e-06 63_[-2]_25 chr10:99519974-99520474 6.6e-06 61_[+2]_27 chr1:24043447-24043947 6.6e-06 54_[+2]_34 chr8:99114660-99115160 6.6e-06 60_[+2]_28 chr1:212596155-212596655 7.6e-06 32_[+2]_56 chr12:51405731-51406231 7.6e-06 88_[-2] chr6:4109343-4109843 7.6e-06 60_[+2]_28 chr8:109611165-109611665 8.7e-06 73_[-2]_15 chr10:50463970-50464470 8.7e-06 17_[-2]_71 chr12:122368386-12236888 8.7e-06 60_[-2]_28 chr5:83265170-83265670 8.7e-06 [-2]_88 chr8:71355233-71355733 1.1e-05 41_[+2]_47 chr1:231037946-231038446 1.3e-05 66_[+2]_22 chrX:136046983-136047483 1.5e-05 57_[-2]_31 chr5:88516295-88516795 1.7e-05 69_[-2]_19 chr16:12120436-12120936 1.7e-05 33_[+2]_55 chr6:8939605-8940105 1.7e-05 11_[+2]_77 chr10:121831742-12183224 1.7e-05 37_[-2]_51 chr17:27915608-27916108 1.7e-05 [-2]_88 chr17:66502797-66503297 1.7e-05 66_[+2]_22 chr5:127934854-127935354 1.9e-05 65_[+2]_23 chr3:172140650-172141150 1.9e-05 [+2]_88 chr5:119328676-119329176 1.9e-05 10_[+2]_78 chr10:12720331-12720831 2.2e-05 57_[-2]_31 chr10:112793304-11279380 2.2e-05 62_[+2]_26 chr10:72800366-72800866 2.2e-05 84_[-2]_4 chr2:209495970-209496470 2.2e-05 66_[-2]_22 chr15:88586310-88586810 2.2e-05 33_[-2]_55 chr1:59214665-59215165 2.9e-05 10_[-2]_78 chr1:3403704-3404204 2.9e-05 86_[+2]_2 chr3:169526186-169526686 2.9e-05 78_[+2]_10 chr1:228902969-228903469 2.9e-05 23_[+2]_65 chr10:7433224-7433724 3.2e-05 30_[-2]_58 chr5:90547962-90548462 3.2e-05 50_[+2]_38 chr3:44995225-44995725 3.2e-05 7_[-2]_81 chr6:138036859-138037359 3.2e-05 87_[-2]_1 chr12:107380062-10738056 3.6e-05 68_[+2]_20 chr17:8093651-8094151 3.6e-05 66_[-2]_22 chr1:201721118-201721618 4.1e-05 71_[-2]_17 chr7:22548262-22548762 4.1e-05 30_[+2]_58 chr10:35890236-35890736 4.1e-05 78_[-2]_10 chr14:99821632-99822132 4.4e-05 81_[+2]_7 chr9:95721050-95721550 4.4e-05 8_[-2]_80 chrX:23944266-23944766 4.4e-05 80_[+2]_8 chr10:121500888-12150138 4.4e-05 87_[+2]_1 chr2:48732937-48733437 4.4e-05 68_[+2]_20 chr7:42091664-42092164 4.4e-05 75_[-2]_13 chr1:175841774-175842274 4.9e-05 24_[+2]_64 chr7:158615985-158616485 4.9e-05 48_[+2]_40 chr5:92552245-92552745 5.4e-05 87_[+2]_1 chr5:99900439-99900939 5.4e-05 55_[+2]_33 chr1:3419785-3420285 5.4e-05 37_[+2]_51 chr7:40986333-40986833 5.4e-05 25_[-2]_63 chr10:11685707-11686207 5.4e-05 49_[-2]_39 chr17:66570802-66571302 5.4e-05 76_[+2]_12 chr5:74632108-74632608 5.9e-05 45_[+2]_43 chr12:54052075-54052575 5.9e-05 79_[-2]_9 chr5:125275307-125275807 5.9e-05 47_[+2]_41 chr7:25777831-25778331 5.9e-05 9_[+2]_79 chr19:40920945-40921445 6.5e-05 40_[-2]_48 chr7:27165479-27165979 6.5e-05 55_[+2]_33 chr10:7311240-7311740 6.5e-05 73_[+2]_15 chr14:96574836-96575336 6.5e-05 27_[+2]_61 chr8:71496063-71496563 6.5e-05 54_[+2]_34 chr1:169942305-169942805 6.5e-05 3_[-2]_85 chr16:29943442-29943942 6.5e-05 37_[-2]_51 chr5:38782988-38783488 7.1e-05 54_[-2]_34 chr14:36955972-36956472 7.1e-05 13_[+2]_75 chr5:59649128-59649628 7.1e-05 63_[-2]_25 chr12:116718841-11671934 7.1e-05 49_[-2]_39 chr6:90677333-90677833 7.1e-05 18_[-2]_70 chr17:2602506-2603006 7.1e-05 25_[+2]_63 chr8:37517073-37517573 7.1e-05 78_[+2]_10 chr1:68217000-68217500 7.8e-05 6_[-2]_82 chr5:54302197-54302697 7.8e-05 59_[-2]_29 chr1:220918448-220918948 7.8e-05 12_[-2]_76 chr10:26524157-26524657 7.8e-05 48_[-2]_40 chr21:33971505-33972005 7.8e-05 1_[+2]_87 chr3:24365188-24365688 7.8e-05 10_[-2]_78 chr10:126249961-12625046 8.5e-05 29_[-2]_59 chr20:5582150-5582650 9.4e-05 68_[-2]_20 chr6:1667161-1667661 0.0001 86_[-2]_2 chr1:168801355-168801855 0.0001 60_[+2]_28 chr16:25049563-25050063 0.00011 4_[-2]_84 chr6:125050688-125051188 0.00011 52_[-2]_36 chr10:75593192-75593692 0.00011 21_[+2]_67 chr6:56529579-56530079 0.00012 49_[-2]_39 chr17:17958279-17958779 0.00012 2_[+2]_86 chr15:70507800-70508300 0.00012 31_[+2]_57 chr5:125277476-125277976 0.00012 13_[+2]_75 chr5:82387250-82387750 0.00013 55_[-2]_33 chr7:80760236-80760736 0.00013 38_[+2]_50 chr11:126153926-12615442 0.00013 60_[+2]_28 chr14:68140202-68140702 0.00014 63_[-2]_25 chr3:169657253-169657753 0.00014 37_[+2]_51 chr4:71111077-71111577 0.00014 85_[+2]_3 chr6:161586823-161587323 0.00014 62_[-2]_26 chr11:95521037-95521537 0.00015 80_[+2]_8 chr3:17730413-17730913 0.00016 48_[-2]_40 chr5:17305870-17306370 0.00016 73_[-2]_15 chr6:91299548-91300048 0.00017 62_[-2]_26 chr17:77543004-77543504 0.00018 49_[+2]_39 chr4:185914645-185915145 0.0002 12_[+2]_76 chr3:71102096-71102596 0.00023 81_[+2]_7 chr3:77191644-77192144 0.00024 63_[-2]_25 chr10:73966183-73966683 0.00026 46_[-2]_42 chr9:23731384-23731884 0.00028 64_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WDTGTTTRTTTT width=12 seqs=131 chr13:46674981-46675481 ( 55) TGTGTTTGTTTT 1 chr2:188573438-188573938 ( 10) TGTGTTTGTTTT 1 chr11:20070419-20070919 ( 32) TGTGTTTGTTTT 1 chr2:109261151-109261651 ( 23) TGTGTTTGTTTT 1 chr7:2157574-2158074 ( 25) AGTGTTTATTTT 1 chr3:16482918-16483418 ( 72) AGTGTTTGTTTT 1 chr1:229221437-229221937 ( 9) AGTGTTTACTTT 1 chr5:136420522-136421022 ( 28) AGTGTTTGCTTT 1 chr2:100005014-100005514 ( 71) TTTGTTTATTTT 1 chr4:111883490-111883990 ( 75) TCTGTTTGTTTT 1 chr12:806375-806875 ( 26) AATGTTTATTTT 1 chr4:38150223-38150723 ( 16) AATGTTTATTTT 1 chr5:154334291-154334791 ( 31) TTTGTTTGTTTT 1 chr12:48021694-48022194 ( 1) TGTGTTTGTTTA 1 chr5:59021114-59021614 ( 4) TTTGTTTACTTT 1 chr15:69143642-69144142 ( 40) GGTGTTTGTTTT 1 chr4:119730134-119730634 ( 12) TATGTTTGCTTT 1 chr17:48492589-48493089 ( 18) AGTGTTTATTTA 1 chr4:19823713-19824213 ( 33) CATGTTTATTTT 1 chr3:156161124-156161624 ( 27) CATGTTTATTTT 1 chr2:205280600-205281100 ( 71) AGTGTTTATTTA 1 chr8:70181883-70182383 ( 37) TGTGTTTATCTT 1 chr17:60371700-60372200 ( 13) AATGTTTGTTTT 1 chr14:32308052-32308552 ( 73) TATGTTTGCTTT 1 chr6:11270217-11270717 ( 64) CTTGTTTATTTT 1 chr10:99519974-99520474 ( 62) GGTGTTTACTTT 1 chr1:24043447-24043947 ( 55) CTTGTTTATTTT 1 chr8:99114660-99115160 ( 61) TGTGTTTATATT 1 chr1:212596155-212596655 ( 33) ATTGTTTACTTT 1 chr12:51405731-51406231 ( 89) TGTGTTTGTCTT 1 chr6:4109343-4109843 ( 61) TGTGTTTGTCTT 1 chr8:109611165-109611665 ( 74) AGTGTTTATCTT 1 chr10:50463970-50464470 ( 18) CTTGTTTGTTTT 1 chr12:122368386-12236888 ( 61) CATGTTTACTTT 1 chr5:83265170-83265670 ( 1) CATGTTTACTTT 1 chr8:71355233-71355733 ( 42) TGTGTTTACTCT 1 chr1:231037946-231038446 ( 67) GCTGTTTATTTT 1 chrX:136046983-136047483 ( 58) TCTGTTTGTTTA 1 chr5:88516295-88516795 ( 70) AGTGTTTACTCT 1 chr16:12120436-12120936 ( 34) TGTGTTTATGTT 1 chr6:8939605-8940105 ( 12) GATGTTTACTTT 1 chr10:121831742-12183224 ( 38) TCTGTTTACTTA 1 chr17:27915608-27916108 ( 1) GCTGTTTGTTTT 1 chr17:66502797-66503297 ( 67) AGTGTTTACTCT 1 chr5:127934854-127935354 ( 66) GGTGTTTGTTTA 1 chr3:172140650-172141150 ( 1) TATGTTTATTCT 1 chr5:119328676-119329176 ( 11) TCTGTTTATATT 1 chr10:12720331-12720831 ( 58) TCTGTTTGCTTA 1 chr10:112793304-11279380 ( 63) TTTGTTTGTCTT 1 chr10:72800366-72800866 ( 85) GATGTTTGCTTT 1 chr2:209495970-209496470 ( 67) TATGTTTGTATT 1 chr15:88586310-88586810 ( 34) TGGGTTTGTTTT 1 chr1:59214665-59215165 ( 11) TGTGTTTGTATA 1 chr1:3403704-3404204 ( 87) CGTGTTTTCTTT 1 chr3:169526186-169526686 ( 79) CATGTTTACTTA 1 chr1:228902969-228903469 ( 24) ACTGTTTATATT 1 chr10:7433224-7433724 ( 31) CTTGTTTACTTA 1 chr5:90547962-90548462 ( 51) TTTGTTTGCCTT 1 chr3:44995225-44995725 ( 8) AATGTTTACCTT 1 chr6:138036859-138037359 ( 88) ATTGTTTATTCT 1 chr12:107380062-10738056 ( 69) TTTGTTTGCATT 1 chr17:8093651-8094151 ( 67) TGTATTTGTTTT 1 chr1:201721118-201721618 ( 72) ACTGTTTACATT 1 chr7:22548262-22548762 ( 31) TGTGTTTGCATA 1 chr10:35890236-35890736 ( 79) ATTGTTTGTTCT 1 chr14:99821632-99822132 ( 82) AGTGTTTGTTCA 1 chr9:95721050-95721550 ( 9) TTTGTTTATGTT 1 chrX:23944266-23944766 ( 81) GATGTTTGTTTA 1 chr10:121500888-12150138 ( 88) TCGGTTTATTTT 1 chr2:48732937-48733437 ( 69) AGTGTTTACATA 1 chr7:42091664-42092164 ( 76) ATTGTTTGCCTT 1 chr1:175841774-175842274 ( 25) GGTGTTTGCTCT 1 chr7:158615985-158616485 ( 49) TGTGTTTTTATT 1 chr5:92552245-92552745 ( 88) GCTGTTTACTTA 1 chr5:99900439-99900939 ( 56) ATTGTTTTCTTT 1 chr1:3419785-3420285 ( 38) TGTGTTTTTTCT 1 chr7:40986333-40986833 ( 26) ACTGTTTTCTTT 1 chr10:11685707-11686207 ( 50) ATTGTTTTCTTT 1 chr17:66570802-66571302 ( 77) CGTGTTTACATA 1 chr5:74632108-74632608 ( 46) TTTGTTTATTCA 1 chr12:54052075-54052575 ( 80) ACTGTTTATGTT 1 chr5:125275307-125275807 ( 48) ATGGTTTATTTT 1 chr7:25777831-25778331 ( 10) TTTGTTTACGTT 1 chr19:40920945-40921445 ( 41) AGTGTTTACCCT 1 chr7:27165479-27165979 ( 56) GGGGTTTGTTTT 1 chr10:7311240-7311740 ( 74) TGGGTTTATCTT 1 chr14:96574836-96575336 ( 28) CAGGTTTATTTT 1 chr8:71496063-71496563 ( 55) CAGGTTTATTTT 1 chr1:169942305-169942805 ( 4) CTTGTTTTCTTT 1 chr16:29943442-29943942 ( 38) CAGGTTTATTTT 1 chr5:38782988-38783488 ( 55) ACTGTTTGTGTT 1 chr14:36955972-36956472 ( 14) TGTGTTTTCTCT 1 chr5:59649128-59649628 ( 64) CGTGTTTTTCTT 1 chr12:116718841-11671934 ( 50) CGTGTTTATTAT 1 chr6:90677333-90677833 ( 19) AATGTTTGTCTA 1 chr17:2602506-2603006 ( 26) TGTATTTATTTA 1 chr8:37517073-37517573 ( 79) ACTGTTTGTGTT 1 chr1:68217000-68217500 ( 7) AGGGTTTGTTTA 1 chr5:54302197-54302697 ( 60) AGTGTTTTCCTT 1 chr1:220918448-220918948 ( 13) CATGTTTATATA 1 chr10:26524157-26524657 ( 49) GTTGTTTTTTTT 1 chr21:33971505-33972005 ( 2) TCTGTTTACTCA 1 chr3:24365188-24365688 ( 11) TTTATTTGTTTT 1 chr10:126249961-12625046 ( 30) CCTGTTTATATA 1 chr20:5582150-5582650 ( 69) TATGTTTATGTA 1 chr6:1667161-1667661 ( 87) GGTGTTTATACT 1 chr1:168801355-168801855 ( 61) AATGTTTATTGT 1 chr16:25049563-25050063 ( 5) TAGGTTTGTTTA 1 chr6:125050688-125051188 ( 53) TTTGTTTACACT 1 chr10:75593192-75593692 ( 22) TCTGTTTGTTAT 1 chr6:56529579-56530079 ( 50) TATGTTTTCATT 1 chr17:17958279-17958779 ( 3) TGTATTTACCTT 1 chr15:70507800-70508300 ( 32) CTTGTTTACTCA 1 chr5:125277476-125277976 ( 14) CTTATTTGTTTT 1 chr5:82387250-82387750 ( 56) TGTGTTTATCAT 1 chr7:80760236-80760736 ( 39) AATGTTTGTTAT 1 chr11:126153926-12615442 ( 61) CTTGTTTATTGT 1 chr14:68140202-68140702 ( 64) ACTGTTTACTGT 1 chr3:169657253-169657753 ( 38) TTTATTTATTTA 1 chr4:71111077-71111577 ( 86) TCTATTTATTTA 1 chr6:161586823-161587323 ( 63) AGTGTTTTTATA 1 chr11:95521037-95521537 ( 81) GCTATTTATTTT 1 chr3:17730413-17730913 ( 49) AATATTTATTTA 1 chr5:17305870-17306370 ( 74) TTTATTTGTTTA 1 chr6:91299548-91300048 ( 63) TATATTTATATT 1 chr17:77543004-77543504 ( 50) CATATTTATTTA 1 chr4:185914645-185915145 ( 13) AATGTTTATACA 1 chr3:71102096-71102596 ( 82) TATGTTTATAAT 1 chr3:77191644-77192144 ( 64) AATGTTTATCGT 1 chr10:73966183-73966683 ( 47) TGTGTTTAATTA 1 chr9:23731384-23731884 ( 65) TAAGTTTATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 10.4181 E= 1.5e-031 4 -27 -98 54 -20 -40 79 -38 -524 -1368 -147 167 -166 -1368 210 -1368 -1368 -1368 -1368 179 -1368 -1368 -1368 179 -1368 -1368 -1368 179 95 -1368 70 -154 -524 64 -1368 120 -92 -79 -198 122 -292 -70 -279 147 -15 -1368 -1368 136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 131 E= 1.5e-031 0.297710 0.175573 0.106870 0.419847 0.251908 0.160305 0.366412 0.221374 0.007634 0.000000 0.076336 0.916031 0.091603 0.000000 0.908397 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.557252 0.000000 0.343511 0.099237 0.007634 0.328244 0.000000 0.664122 0.152672 0.122137 0.053435 0.671756 0.038168 0.129771 0.030534 0.801527 0.259542 0.000000 0.000000 0.740458 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDTGTTTRTTTT MEME-2 regular expression -------------------------------------------------------------------------------- [TA][GAT]TGTTT[AG][TC]TT[TA] -------------------------------------------------------------------------------- Time 788.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGCTGWG MEME-3 width = 9 sites = 74 llr = 699 E-value = 3.9e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::1:3: pos.-specific C a72:a1::: probability G :::a:1a27 matrix T ::8::7:53 bits 2.2 * ** * 2.0 * ** * 1.8 * ** * 1.6 * ** * Relative 1.3 * ** * Entropy 1.1 ***** * * (13.6 bits) 0.9 ***** * * 0.7 ******* * 0.4 ********* 0.2 ********* 0.0 --------- Multilevel CCTGCTGTG consensus A AT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr10:72228276-72228776 + 90 2.13e-06 TGTATTGCTA CCTGCTGTG TT chr9:111961498-111961998 + 43 2.13e-06 tcattgagca cctgctgtg tcttggcact chr22:24026697-24027197 + 25 2.13e-06 acaaacagac cctgctgtg atgtttattg chr2:206230212-206230712 - 35 2.13e-06 AGCAGGGATC CCTGCTGTG AACCTGCTGC chr12:89769185-89769685 + 14 2.13e-06 atgatgaaat cctgctgtg cgcaactaac chr4:23818163-23818663 + 51 2.13e-06 GTCAAAAGAG CCTGCTGTG CAGAGCAACA chr10:8271879-8272379 + 47 2.13e-06 GATGTTATCC CCTGCTGTG AACCACTTAC chr6:15735686-15736186 - 4 2.13e-06 AAACTGTAAA CCTGCTGTG CTA chr4:110904623-110905123 - 54 3.69e-06 TCTACAATCT CCTGCTGGG TTTCATTTGA chr8:29126517-29127017 + 34 3.69e-06 CAATGCTCTC CCTGCTGGG TTTATAGTCC chr7:81299211-81299711 + 25 3.69e-06 ATAATAAATC CCTGCTGGG CTGTACTGTG chr16:22232694-22233194 - 68 3.69e-06 ACACCCAATA CCTGCTGGG TGTGTTCCTT chr17:27915608-27916108 + 61 3.69e-06 TGACGACACC CCTGCTGGG TCCAGCCTCA chr8:120266360-120266860 + 31 3.69e-06 TTCATTGACT CCTGCTGGG TAAACTGAAT chr12:26274488-26274988 - 46 3.69e-06 AACTGGAGGT CCTGCTGGG ATGGCATGAC chr20:40844254-40844754 - 40 3.69e-06 TTGGCGGGAC CCTGCTGGG CGCCGGGCAA chr5:136420522-136421022 + 77 5.82e-06 CTCTGTCCCT CCTGCTGAG AGCTTCCCCA chr6:54879150-54879650 + 27 5.82e-06 GATTATCTAC CCTGCTGAG AAGCAGAACC chr17:77543004-77543504 - 78 5.82e-06 TAAAATGTCA CCTGCTGAG ACATATCACC chr4:80307274-80307774 + 58 1.17e-05 ACCTTGCTTC CCTGCTGTT CCTGACAGCA chr21:38990096-38990596 - 85 1.17e-05 AGGACTG CATGCTGTG TTTTATAGGC chr4:53943648-53944148 + 42 1.17e-05 GCCTTTCCTT CCTGCTGTT TAATAATGCC chr13:21043940-21044440 - 64 1.17e-05 TGAAATGAAT CCTGCTGTT TTATAGAGGG chr14:96888511-96889011 + 60 1.17e-05 CCCAAGCTCT CCTGCTGTT TCTAATCTGT chr8:50056573-50057073 - 52 1.17e-05 AGCCCAGTGT CCTGCTGTT CCAGCAATCC chr1:116476295-116476795 + 44 1.17e-05 ctcaagggaa catgctgtg cccttatctt chr6:90677333-90677833 + 86 1.17e-05 TGGAGGGCAC CCTGCTGTT TCAATC chr8:99114660-99115160 - 34 1.17e-05 GTAATGGTTT CCTGCTGTT ATCTAAACAC chr17:48239197-48239697 - 16 1.17e-05 CTCATAACTT CATGCTGTG AATGTGATAA chr14:36905267-36905767 - 50 1.17e-05 GAATAATGTT CCTGCTGTT AGATCAGCCT chr4:111883490-111883990 + 22 1.32e-05 CTGAGCCTCC CCCGCTGTG TCAGGATAAA chr6:123841208-123841708 - 90 1.53e-05 TC CCTGCAGTG ATAAGGGCAG chr1:38724121-38724621 - 29 1.53e-05 TAGGAAGCTT CCTGCAGTG TCAGAGCTGA chr17:76029392-76029892 - 10 1.53e-05 GTGAGGGCCC CCTGCAGTG CTCATTTCC chr6:18405427-18405927 - 67 1.53e-05 GCCATCTGAC CCTGCAGTG GCTCCGTTGT chr7:36303328-36303828 - 44 1.53e-05 AAATGGCTTC CCTGCAGTG TCACACCACT chr1:11178267-11178767 - 26 1.96e-05 AACTGGCTGA CATGCTGGG AGCGGTGTGC chr10:7433224-7433724 + 48 1.96e-05 ACAAGCCATT CCTGCTGGT AAAATAATTG chr4:185914645-185915145 + 73 1.96e-05 TCGTTTGATC CCTGCTGGT GGGAGAAAGC chr5:59317174-59317674 - 59 1.96e-05 GTTAGGGAAG CCTGCTGGT GTCCTGCCTG chr10:15704514-15705014 - 18 2.66e-05 CTGAGATGCC CATGCTGAG AGGTTTTCAT chr6:138088174-138088674 - 63 2.66e-05 GAAATGGAAT CCTGCTGAT TTAAATGGCA chr10:74256039-74256539 + 16 2.66e-05 CATGGAGCGC CATGCTGAG AAGATTAGAG chr19:2983984-2984484 + 12 2.66e-05 CCACACTTTT CATGCTGAG CGCATTAAAG chr5:174520398-174520898 + 15 2.66e-05 TTGTTGTCTG CCCGCTGGG AGAGAACACT chr6:132122774-132123274 + 41 2.66e-05 AATCCTCACC CATGCTGAG AGCCACGTGC chr5:78017095-78017595 - 64 2.66e-05 TTTACACTGT CATGCTGAG TGGTACAAAT chr8:37359521-37360021 - 11 2.81e-05 ATTACTCCAG CCCGCTGAG GTCACCTTCC chr9:82923409-82923909 + 16 3.79e-05 CAATCTACCT CACGCTGTG TCTCCGAAGC chr1:87718279-87718779 - 39 3.79e-05 TAGATAAAAA CCTGCAGGG TGTTTCTGTA chr7:114530080-114530580 + 87 3.79e-05 AAGAATGTGT CACGCTGTG CTGTT chr15:96053095-96053595 - 87 3.79e-05 GGCTC CCCGCTGTT TAACGACAAT chr11:130103426-13010392 + 70 3.79e-05 TTGACCATTC CACGCTGTG GCTTGGGTGA chr6:21264311-21264811 + 37 4.32e-05 ATTTAAGATC CCTGCGGTG TGAAGGAAGT chr18:49655995-49656495 - 35 4.32e-05 AGCCATCAAG CCTGCGGTG CAATATCCCT chr11:123213185-12321368 + 92 4.32e-05 taaaaaactt cctgcggtg chr8:70181883-70182383 + 91 4.32e-05 GCTGAAGTCT CCTGCCGTG C chr3:16482918-16483418 - 18 4.90e-05 AAATATGATA CCTGCAGTT TTAGAACATA chr3:182365054-182365554 - 21 4.90e-05 GAAAGCAGCA CATGCAGTG GCTTGATAGC chr15:70091809-70092309 - 50 4.90e-05 TTGAATTATT CATGCAGTG TCCTGCCCTC chr1:89719630-89720130 - 46 6.06e-05 TGTGCAGGAT CATGCTGAT TCCTTTAAGT chr10:33325898-33326398 + 49 6.06e-05 TATAAATTAT CATGCTGAT TGTGTGCATT chr10:126247489-12624798 - 77 6.06e-05 TTGTTGCCAC CATGCTGAT TTGAGAGGTA chr10:117148170-11714867 - 44 6.06e-05 TTCCAGAAGT CATGCTGAT TTAATTAGTT chr10:12405446-12405946 - 91 6.06e-05 T CATGCTGAT ATCACGGGTT chr10:36423717-36424217 + 52 6.71e-05 GCAGTGGAAT CCCGCTGAT TTACTACTTA chr12:29754587-29755087 - 38 6.71e-05 TGAGTGGCAA CACGCTGAG ATGAGTCAGG chr14:69880091-69880591 + 22 6.71e-05 AATGTCACCT CCTGCCGGG CAGGCACTGG chr5:174371579-174372079 + 50 9.67e-05 AGGCTGGTGA CCCGCAGAG AGTTTGTCTA chr17:43670017-43670517 - 67 1.16e-04 CGGTTACCCA CACGCTGAT TTCTGTTTTA chr17:32015500-32016000 - 8 1.29e-04 AACAAAAGTA CCCGCCGAG GGCAGAG chr8:37547855-37548355 - 84 1.45e-04 GAATTAAT CATGCCGTT AGGTAAGCAT chr16:324337-324837 + 31 1.45e-04 GCAGAAAACG CCCGCAGGT GGTCAGTAGG chr10:2882566-2883066 - 77 1.55e-04 GAAATGTTCT CACGCGGTG AATGAAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:72228276-72228776 2.1e-06 89_[+3]_2 chr9:111961498-111961998 2.1e-06 42_[+3]_49 chr22:24026697-24027197 2.1e-06 24_[+3]_67 chr2:206230212-206230712 2.1e-06 34_[-3]_57 chr12:89769185-89769685 2.1e-06 13_[+3]_78 chr4:23818163-23818663 2.1e-06 50_[+3]_41 chr10:8271879-8272379 2.1e-06 46_[+3]_45 chr6:15735686-15736186 2.1e-06 3_[-3]_88 chr4:110904623-110905123 3.7e-06 53_[-3]_38 chr8:29126517-29127017 3.7e-06 33_[+3]_58 chr7:81299211-81299711 3.7e-06 24_[+3]_67 chr16:22232694-22233194 3.7e-06 67_[-3]_24 chr17:27915608-27916108 3.7e-06 60_[+3]_31 chr8:120266360-120266860 3.7e-06 30_[+3]_61 chr12:26274488-26274988 3.7e-06 45_[-3]_46 chr20:40844254-40844754 3.7e-06 39_[-3]_52 chr5:136420522-136421022 5.8e-06 76_[+3]_15 chr6:54879150-54879650 5.8e-06 26_[+3]_65 chr17:77543004-77543504 5.8e-06 77_[-3]_14 chr4:80307274-80307774 1.2e-05 57_[+3]_34 chr21:38990096-38990596 1.2e-05 84_[-3]_7 chr4:53943648-53944148 1.2e-05 41_[+3]_50 chr13:21043940-21044440 1.2e-05 63_[-3]_28 chr14:96888511-96889011 1.2e-05 59_[+3]_32 chr8:50056573-50057073 1.2e-05 51_[-3]_40 chr1:116476295-116476795 1.2e-05 43_[+3]_48 chr6:90677333-90677833 1.2e-05 85_[+3]_6 chr8:99114660-99115160 1.2e-05 33_[-3]_58 chr17:48239197-48239697 1.2e-05 15_[-3]_76 chr14:36905267-36905767 1.2e-05 49_[-3]_42 chr4:111883490-111883990 1.3e-05 21_[+3]_70 chr6:123841208-123841708 1.5e-05 89_[-3]_2 chr1:38724121-38724621 1.5e-05 28_[-3]_63 chr17:76029392-76029892 1.5e-05 9_[-3]_82 chr6:18405427-18405927 1.5e-05 66_[-3]_25 chr7:36303328-36303828 1.5e-05 43_[-3]_48 chr1:11178267-11178767 2e-05 25_[-3]_66 chr10:7433224-7433724 2e-05 47_[+3]_44 chr4:185914645-185915145 2e-05 72_[+3]_19 chr5:59317174-59317674 2e-05 58_[-3]_33 chr10:15704514-15705014 2.7e-05 17_[-3]_74 chr6:138088174-138088674 2.7e-05 62_[-3]_29 chr10:74256039-74256539 2.7e-05 15_[+3]_76 chr19:2983984-2984484 2.7e-05 11_[+3]_80 chr5:174520398-174520898 2.7e-05 14_[+3]_77 chr6:132122774-132123274 2.7e-05 40_[+3]_51 chr5:78017095-78017595 2.7e-05 63_[-3]_28 chr8:37359521-37360021 2.8e-05 10_[-3]_81 chr9:82923409-82923909 3.8e-05 15_[+3]_76 chr1:87718279-87718779 3.8e-05 38_[-3]_53 chr7:114530080-114530580 3.8e-05 86_[+3]_5 chr15:96053095-96053595 3.8e-05 86_[-3]_5 chr11:130103426-13010392 3.8e-05 69_[+3]_22 chr6:21264311-21264811 4.3e-05 36_[+3]_55 chr18:49655995-49656495 4.3e-05 34_[-3]_57 chr11:123213185-12321368 4.3e-05 91_[+3] chr8:70181883-70182383 4.3e-05 90_[+3]_1 chr3:16482918-16483418 4.9e-05 17_[-3]_74 chr3:182365054-182365554 4.9e-05 20_[-3]_71 chr15:70091809-70092309 4.9e-05 49_[-3]_42 chr1:89719630-89720130 6.1e-05 45_[-3]_46 chr10:33325898-33326398 6.1e-05 48_[+3]_43 chr10:126247489-12624798 6.1e-05 76_[-3]_15 chr10:117148170-11714867 6.1e-05 43_[-3]_48 chr10:12405446-12405946 6.1e-05 90_[-3]_1 chr10:36423717-36424217 6.7e-05 51_[+3]_40 chr12:29754587-29755087 6.7e-05 37_[-3]_54 chr14:69880091-69880591 6.7e-05 21_[+3]_70 chr5:174371579-174372079 9.7e-05 49_[+3]_42 chr17:43670017-43670517 0.00012 66_[-3]_25 chr17:32015500-32016000 0.00013 7_[-3]_84 chr8:37547855-37548355 0.00014 83_[-3]_8 chr16:324337-324837 0.00014 30_[+3]_61 chr10:2882566-2883066 0.00016 76_[-3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGCTGWG width=9 seqs=74 chr10:72228276-72228776 ( 90) CCTGCTGTG 1 chr9:111961498-111961998 ( 43) CCTGCTGTG 1 chr22:24026697-24027197 ( 25) CCTGCTGTG 1 chr2:206230212-206230712 ( 35) CCTGCTGTG 1 chr12:89769185-89769685 ( 14) CCTGCTGTG 1 chr4:23818163-23818663 ( 51) CCTGCTGTG 1 chr10:8271879-8272379 ( 47) CCTGCTGTG 1 chr6:15735686-15736186 ( 4) CCTGCTGTG 1 chr4:110904623-110905123 ( 54) CCTGCTGGG 1 chr8:29126517-29127017 ( 34) CCTGCTGGG 1 chr7:81299211-81299711 ( 25) CCTGCTGGG 1 chr16:22232694-22233194 ( 68) CCTGCTGGG 1 chr17:27915608-27916108 ( 61) CCTGCTGGG 1 chr8:120266360-120266860 ( 31) CCTGCTGGG 1 chr12:26274488-26274988 ( 46) CCTGCTGGG 1 chr20:40844254-40844754 ( 40) CCTGCTGGG 1 chr5:136420522-136421022 ( 77) CCTGCTGAG 1 chr6:54879150-54879650 ( 27) CCTGCTGAG 1 chr17:77543004-77543504 ( 78) CCTGCTGAG 1 chr4:80307274-80307774 ( 58) CCTGCTGTT 1 chr21:38990096-38990596 ( 85) CATGCTGTG 1 chr4:53943648-53944148 ( 42) CCTGCTGTT 1 chr13:21043940-21044440 ( 64) CCTGCTGTT 1 chr14:96888511-96889011 ( 60) CCTGCTGTT 1 chr8:50056573-50057073 ( 52) CCTGCTGTT 1 chr1:116476295-116476795 ( 44) CATGCTGTG 1 chr6:90677333-90677833 ( 86) CCTGCTGTT 1 chr8:99114660-99115160 ( 34) CCTGCTGTT 1 chr17:48239197-48239697 ( 16) CATGCTGTG 1 chr14:36905267-36905767 ( 50) CCTGCTGTT 1 chr4:111883490-111883990 ( 22) CCCGCTGTG 1 chr6:123841208-123841708 ( 90) CCTGCAGTG 1 chr1:38724121-38724621 ( 29) CCTGCAGTG 1 chr17:76029392-76029892 ( 10) CCTGCAGTG 1 chr6:18405427-18405927 ( 67) CCTGCAGTG 1 chr7:36303328-36303828 ( 44) CCTGCAGTG 1 chr1:11178267-11178767 ( 26) CATGCTGGG 1 chr10:7433224-7433724 ( 48) CCTGCTGGT 1 chr4:185914645-185915145 ( 73) CCTGCTGGT 1 chr5:59317174-59317674 ( 59) CCTGCTGGT 1 chr10:15704514-15705014 ( 18) CATGCTGAG 1 chr6:138088174-138088674 ( 63) CCTGCTGAT 1 chr10:74256039-74256539 ( 16) CATGCTGAG 1 chr19:2983984-2984484 ( 12) CATGCTGAG 1 chr5:174520398-174520898 ( 15) CCCGCTGGG 1 chr6:132122774-132123274 ( 41) CATGCTGAG 1 chr5:78017095-78017595 ( 64) CATGCTGAG 1 chr8:37359521-37360021 ( 11) CCCGCTGAG 1 chr9:82923409-82923909 ( 16) CACGCTGTG 1 chr1:87718279-87718779 ( 39) CCTGCAGGG 1 chr7:114530080-114530580 ( 87) CACGCTGTG 1 chr15:96053095-96053595 ( 87) CCCGCTGTT 1 chr11:130103426-13010392 ( 70) CACGCTGTG 1 chr6:21264311-21264811 ( 37) CCTGCGGTG 1 chr18:49655995-49656495 ( 35) CCTGCGGTG 1 chr11:123213185-12321368 ( 92) CCTGCGGTG 1 chr8:70181883-70182383 ( 91) CCTGCCGTG 1 chr3:16482918-16483418 ( 18) CCTGCAGTT 1 chr3:182365054-182365554 ( 21) CATGCAGTG 1 chr15:70091809-70092309 ( 50) CATGCAGTG 1 chr1:89719630-89720130 ( 46) CATGCTGAT 1 chr10:33325898-33326398 ( 49) CATGCTGAT 1 chr10:126247489-12624798 ( 77) CATGCTGAT 1 chr10:117148170-11714867 ( 44) CATGCTGAT 1 chr10:12405446-12405946 ( 91) CATGCTGAT 1 chr10:36423717-36424217 ( 52) CCCGCTGAT 1 chr12:29754587-29755087 ( 38) CACGCTGAG 1 chr14:69880091-69880591 ( 22) CCTGCCGGG 1 chr5:174371579-174372079 ( 50) CCCGCAGAG 1 chr17:43670017-43670517 ( 67) CACGCTGAT 1 chr17:32015500-32016000 ( 8) CCCGCCGAG 1 chr8:37547855-37548355 ( 84) CATGCCGTT 1 chr16:324337-324837 ( 31) CCCGCAGGT 1 chr10:2882566-2883066 ( 77) CACGCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 11.3458 E= 3.9e-017 -1285 224 -1285 -1285 11 171 -1285 -1285 -1285 -16 -1285 149 -1285 -1285 224 -1285 -1285 224 -1285 -1285 -96 -197 -197 136 -1285 -1285 224 -1285 -10 -1285 3 83 -1285 -1285 171 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 74 E= 3.9e-017 0.000000 1.000000 0.000000 0.000000 0.310811 0.689189 0.000000 0.000000 0.000000 0.189189 0.000000 0.810811 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.148649 0.054054 0.054054 0.743243 0.000000 0.000000 1.000000 0.000000 0.270270 0.000000 0.216216 0.513514 0.000000 0.000000 0.689189 0.310811 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGCTGWG MEME-3 regular expression -------------------------------------------------------------------------------- C[CA]TGCTG[TAG][GT] -------------------------------------------------------------------------------- Time 1139.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACAGWTTTAT MEME-4 width = 12 sites = 41 llr = 443 E-value = 3.3e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:a:41:1a: pos.-specific C :::9::1::::2 probability G 1a:::7:::::: matrix T 9::1:349a8:7 bits 2.2 2.0 1.8 ** * 1.6 **** * * Relative 1.3 **** * * Entropy 1.1 ****** ** * (15.6 bits) 0.9 ****** **** 0.7 ****** ***** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TGACAGATTTAT consensus TT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr6:143755252-143755752 + 31 2.64e-07 AAAAAGTTCC TGACAGTTTTAT ATGAATTAAC chr2:55843194-55843694 - 57 2.64e-07 CCCCAGATCT TGACAGTTTTAT AGTCCTTGGT chr3:172140650-172141150 - 48 2.64e-07 CAACATTGGG TGACAGTTTTAT CTAAGGGTTT chr10:72098722-72099222 + 57 2.64e-07 TCACTAAGAC TGACAGATTTAT AGCTCTGCAA chr5:133274516-133275016 - 62 2.64e-07 TTTCCTCTGA TGACAGTTTTAT CTTCCCATTA chr16:77409263-77409763 + 75 4.57e-07 CAGCCAAGGC TGACAGATTTAC AATGGAGAAC chr12:106074939-10607543 - 58 4.57e-07 TCAGTGGCAA TGACAGTTTTAC TGGGAGAGGC chr2:109213982-109214482 - 24 5.54e-07 AACCACATGC TGACAGCTTTAT TTCCAGTCAC chr8:37637880-37638380 - 3 9.15e-07 ATTCCACTTG TGACATATTTAT GA chr4:19823713-19824213 - 77 1.25e-06 CACTCAGGTC TGACAGTTTAAT GCTATTACAC chr5:126000449-126000949 + 82 1.25e-06 TAATGTATGT TGACAGTTTAAT AACATGG chr22:42964959-42965459 + 83 1.25e-06 caatctacag tgacagattaat gtttgc chr4:89847611-89848111 + 18 1.78e-06 CACTTTTCAA TGACAGAATTAT TGAACACTCT chr10:126247489-12624798 - 24 1.78e-06 TATTCATGGC TGACATTTTTAC TATTACCAAA chr10:7311240-7311740 - 26 2.47e-06 ATGGAGGATG TGATAGATTTAT TAGCCAAGTT chr10:92993770-92994270 - 45 2.66e-06 AACCAGCCGG TGACAGATTCAT CCATCCTCCC chr1:80403329-80403829 - 81 3.12e-06 AATTAAAA TGACAGTTTTAA GAGATAAAGG chr3:61634650-61635150 - 14 3.31e-06 AACAGTGTTG TGACAGTATTAC ACTGGCAAAA chr12:54033461-54033961 - 35 3.55e-06 GCCTTTTAGT GGACAGTTTTAC GAGCCATTGA chr18:74861053-74861553 - 68 3.55e-06 ATTTTTGCAT GGACAGATTTAC ACACTGTCTG chr22:24026697-24027197 + 82 4.20e-06 gggggaaaat tgacatctttac tatgttg chr10:35195663-35196163 + 51 4.20e-06 AAAATGCTGC TGACAGATTTAG AGTTAACTAG chr2:31008532-31009032 + 39 4.96e-06 TCTTCAAATG TGACATTTTAAT GGCATAATAA chr8:120266360-120266860 + 9 4.96e-06 TTTGTAGT TGACAGTTTGAT TTCATTGACT chr8:129946411-129946911 - 63 4.96e-06 ATGGCTCTAA GGACAGCTTTAT GGCTCCTGTG chr10:75379151-75379651 - 35 5.84e-06 ATCAAGCAAA TGACATTATTAT CCATCCGAAG chr14:36955972-36956472 + 36 6.30e-06 CCCCGAATAC TGACACATTTAT ATCCTTTCCC chr4:53943648-53944148 - 17 6.63e-06 GAAAGGCAGA TGACAGCTTCAT TAGTCATGAC chr14:32134446-32134946 - 71 7.56e-06 GACATTGTGA TGATATTTTTAT TTCAAACAAG chr4:128393055-128393555 + 67 7.56e-06 AGGCAGCAGT TGATATATTTAT AGCCTTGTAA chr1:228781066-228781566 - 34 9.87e-06 CCCAGGGAGT TGACATATTTAA CGAGTAAAGC chr3:72899178-72899678 + 65 9.87e-06 TCTTCTATCT TGAAAGATTTAT GATATTTGAT chr13:37046921-37047421 - 69 1.09e-05 GAGAAGTTAT TTACAGATTTAT AGCAGTAACC chr17:17958279-17958779 + 51 1.09e-05 TCCATTAAAA TGACAGACTTAC TACCCCATGC chr20:57579945-57580445 - 49 1.39e-05 GGCCTGCTGC CGACAGCTTTAT GAATCCGCCC chr6:124822064-124822564 - 58 2.07e-05 TTACTTTACA AGACATATTTAT GGCAGGTTGA chr1:62311546-62312046 + 1 2.22e-05 . TGATAGAATTAC CCGATGAGTC chr1:113991288-113991788 - 30 2.22e-05 TGAAATCCAG TGATAGAATTAC CATTTCTCTC chr17:48239197-48239697 - 54 2.22e-05 CTACCATCCA TCACATTTTTAT AGCAGGAGCT chr13:48727220-48727720 + 39 2.22e-05 AGAGTTGCTT TGACATTTATAT GTAGACATTT chr10:121310106-12131060 - 41 2.72e-05 CGATATGAGG TGACAGTTTAGT GGTCAGTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:143755252-143755752 2.6e-07 30_[+4]_58 chr2:55843194-55843694 2.6e-07 56_[-4]_32 chr3:172140650-172141150 2.6e-07 47_[-4]_41 chr10:72098722-72099222 2.6e-07 56_[+4]_32 chr5:133274516-133275016 2.6e-07 61_[-4]_27 chr16:77409263-77409763 4.6e-07 74_[+4]_14 chr12:106074939-10607543 4.6e-07 57_[-4]_31 chr2:109213982-109214482 5.5e-07 23_[-4]_65 chr8:37637880-37638380 9.2e-07 2_[-4]_86 chr4:19823713-19824213 1.3e-06 76_[-4]_12 chr5:126000449-126000949 1.3e-06 81_[+4]_7 chr22:42964959-42965459 1.3e-06 82_[+4]_6 chr4:89847611-89848111 1.8e-06 17_[+4]_71 chr10:126247489-12624798 1.8e-06 23_[-4]_65 chr10:7311240-7311740 2.5e-06 25_[-4]_63 chr10:92993770-92994270 2.7e-06 44_[-4]_44 chr1:80403329-80403829 3.1e-06 80_[-4]_8 chr3:61634650-61635150 3.3e-06 13_[-4]_75 chr12:54033461-54033961 3.5e-06 34_[-4]_54 chr18:74861053-74861553 3.5e-06 67_[-4]_21 chr22:24026697-24027197 4.2e-06 81_[+4]_7 chr10:35195663-35196163 4.2e-06 50_[+4]_38 chr2:31008532-31009032 5e-06 38_[+4]_50 chr8:120266360-120266860 5e-06 8_[+4]_80 chr8:129946411-129946911 5e-06 62_[-4]_26 chr10:75379151-75379651 5.8e-06 34_[-4]_54 chr14:36955972-36956472 6.3e-06 35_[+4]_53 chr4:53943648-53944148 6.6e-06 16_[-4]_72 chr14:32134446-32134946 7.6e-06 70_[-4]_18 chr4:128393055-128393555 7.6e-06 66_[+4]_22 chr1:228781066-228781566 9.9e-06 33_[-4]_55 chr3:72899178-72899678 9.9e-06 64_[+4]_24 chr13:37046921-37047421 1.1e-05 68_[-4]_20 chr17:17958279-17958779 1.1e-05 50_[+4]_38 chr20:57579945-57580445 1.4e-05 48_[-4]_40 chr6:124822064-124822564 2.1e-05 57_[-4]_31 chr1:62311546-62312046 2.2e-05 [+4]_88 chr1:113991288-113991788 2.2e-05 29_[-4]_59 chr17:48239197-48239697 2.2e-05 53_[-4]_35 chr13:48727220-48727720 2.2e-05 38_[+4]_50 chr10:121310106-12131060 2.7e-05 40_[-4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACAGWTTTAT width=12 seqs=41 chr6:143755252-143755752 ( 31) TGACAGTTTTAT 1 chr2:55843194-55843694 ( 57) TGACAGTTTTAT 1 chr3:172140650-172141150 ( 48) TGACAGTTTTAT 1 chr10:72098722-72099222 ( 57) TGACAGATTTAT 1 chr5:133274516-133275016 ( 62) TGACAGTTTTAT 1 chr16:77409263-77409763 ( 75) TGACAGATTTAC 1 chr12:106074939-10607543 ( 58) TGACAGTTTTAC 1 chr2:109213982-109214482 ( 24) TGACAGCTTTAT 1 chr8:37637880-37638380 ( 3) TGACATATTTAT 1 chr4:19823713-19824213 ( 77) TGACAGTTTAAT 1 chr5:126000449-126000949 ( 82) TGACAGTTTAAT 1 chr22:42964959-42965459 ( 83) TGACAGATTAAT 1 chr4:89847611-89848111 ( 18) TGACAGAATTAT 1 chr10:126247489-12624798 ( 24) TGACATTTTTAC 1 chr10:7311240-7311740 ( 26) TGATAGATTTAT 1 chr10:92993770-92994270 ( 45) TGACAGATTCAT 1 chr1:80403329-80403829 ( 81) TGACAGTTTTAA 1 chr3:61634650-61635150 ( 14) TGACAGTATTAC 1 chr12:54033461-54033961 ( 35) GGACAGTTTTAC 1 chr18:74861053-74861553 ( 68) GGACAGATTTAC 1 chr22:24026697-24027197 ( 82) TGACATCTTTAC 1 chr10:35195663-35196163 ( 51) TGACAGATTTAG 1 chr2:31008532-31009032 ( 39) TGACATTTTAAT 1 chr8:120266360-120266860 ( 9) TGACAGTTTGAT 1 chr8:129946411-129946911 ( 63) GGACAGCTTTAT 1 chr10:75379151-75379651 ( 35) TGACATTATTAT 1 chr14:36955972-36956472 ( 36) TGACACATTTAT 1 chr4:53943648-53944148 ( 17) TGACAGCTTCAT 1 chr14:32134446-32134946 ( 71) TGATATTTTTAT 1 chr4:128393055-128393555 ( 67) TGATATATTTAT 1 chr1:228781066-228781566 ( 34) TGACATATTTAA 1 chr3:72899178-72899678 ( 65) TGAAAGATTTAT 1 chr13:37046921-37047421 ( 69) TTACAGATTTAT 1 chr17:17958279-17958779 ( 51) TGACAGACTTAC 1 chr20:57579945-57580445 ( 49) CGACAGCTTTAT 1 chr6:124822064-124822564 ( 58) AGACATATTTAT 1 chr1:62311546-62312046 ( 1) TGATAGAATTAC 1 chr1:113991288-113991788 ( 30) TGATAGAATTAC 1 chr17:48239197-48239697 ( 54) TCACATTTTTAT 1 chr13:48727220-48727720 ( 39) TGACATTTATAT 1 chr10:121310106-12131060 ( 41) TGACAGTTTAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.8363 E= 3.3e-009 -356 -311 -153 160 -1200 -311 217 -356 179 -1200 -1200 -1200 -356 201 -1200 -124 179 -1200 -1200 -1200 -1200 -311 174 -11 60 -79 -1200 60 -124 -311 -1200 156 -356 -1200 -1200 176 -124 -211 -311 148 176 -1200 -311 -1200 -256 21 -311 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 41 E= 3.3e-009 0.024390 0.024390 0.073171 0.878049 0.000000 0.024390 0.951220 0.024390 1.000000 0.000000 0.000000 0.000000 0.024390 0.853659 0.000000 0.121951 1.000000 0.000000 0.000000 0.000000 0.000000 0.024390 0.707317 0.268293 0.439024 0.121951 0.000000 0.439024 0.121951 0.024390 0.000000 0.853659 0.024390 0.000000 0.000000 0.975610 0.121951 0.048780 0.024390 0.804878 0.975610 0.000000 0.024390 0.000000 0.048780 0.243902 0.024390 0.682927 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGWTTTAT MEME-4 regular expression -------------------------------------------------------------------------------- TGACA[GT][AT]TTTA[TC] -------------------------------------------------------------------------------- Time 1480.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACTCA MEME-5 width = 7 sites = 46 llr = 443 E-value = 3.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:::a pos.-specific C :::a:a: probability G :a::::: matrix T a:::a:: bits 2.2 * * * 2.0 * * * 1.8 ******* 1.6 ******* Relative 1.3 ******* Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 ------- Multilevel TGACTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------- chr12:114914221-11491472 - 33 6.55e-05 TGGAGCGATA TGACTCA CTGGATCATA chrX:38061242-38061742 + 84 6.55e-05 AGTCAGAAGG TGACTCA CTCTCTAATC chr3:190972921-190973421 - 29 6.55e-05 ATAGTTTCTG TGACTCA GGAATTTGGG chr5:125485025-125485525 + 85 6.55e-05 AGTCACTCCG TGACTCA CACGAATGG chr6:115485321-115485821 + 26 6.55e-05 TTGCTAAGAT TGACTCA CAAGAGGCTC chr22:24727032-24727532 - 75 6.55e-05 TAATTACAAA TGACTCA TTTGGAAAAC chr10:87586149-87586649 - 40 6.55e-05 GAAGGTCTTA TGACTCA TGGCTACATT chr10:63707202-63707702 - 94 6.55e-05 . TGACTCA CATCTTTCTG chr21:34845670-34846170 - 29 6.55e-05 TAATACTGTT TGACTCA TTCTGTGTTA chr22:40711465-40711965 - 38 6.55e-05 AGCCTCTCGA TGACTCA TGTCTCTGTA chr7:51606687-51607187 + 25 6.55e-05 ttatgagtat tgactca ttcctattaa chr10:15704514-15705014 + 42 6.55e-05 ctcaggaagg tgactca ctgacataaa chr10:72097731-72098231 + 7 6.55e-05 GGCTCC TGACTCA CAAGTGATTC chr20:51934170-51934670 + 82 6.55e-05 CAATACAAAG TGACTCA GAGGTGCATG chr1:62311546-62312046 - 17 6.55e-05 CACACACGGC TGACTCA TCGGGTAATT chr6:138088174-138088674 + 26 6.55e-05 GATTATATGA TGACTCA TTATCACGAA chr1:228902969-228903469 - 59 6.55e-05 GCTCTCTGGT TGACTCA TGAGGATTGG chr15:58332055-58332555 + 87 6.55e-05 TGACGAAGCG TGACTCA CCACTCC chr15:70507800-70508300 - 6 6.55e-05 TTGCTGTGCC TGACTCA TACTA chr17:67978478-67978978 + 82 6.55e-05 AGCAAGAAAA TGACTCA TACATTAGAT chr1:179930918-179931418 - 84 6.55e-05 ATTCTATCAC TGACTCA TTGTGCAGGC chr16:77409263-77409763 + 57 6.55e-05 TCGCAGTAGC TGACTCA ACAGCCAAGG chr2:175805423-175805923 - 82 6.55e-05 TTAACGAGGA TGACTCA CATTTATTGA chr5:174371579-174372079 - 15 6.55e-05 AACGACCAAA TGACTCA TTCTCTAAAG chr5:34608752-34609252 - 48 6.55e-05 AGTGTGTGGC TGACTCA GTAATTGGCC chr1:85297832-85298332 + 75 6.55e-05 CTTAATGGTA TGACTCA TTTAAATGGA chr1:234700146-234700646 + 54 6.55e-05 GGTTAATGGA TGACTCA GAGGCATTAT chr12:122368386-12236888 + 87 6.55e-05 ccaggtgggg tgactca tgtctgc chr15:74546041-74546541 - 53 6.55e-05 TGCTATGAGC TGACTCA GCGGCCGGTA chr6:112231666-112232166 - 74 6.55e-05 TCATAAAATT TGACTCA TAAAACACAT chr5:123814170-123814670 + 14 6.55e-05 TTAAGGAGAA TGACTCA GTAAGTAGTA chr5:67015577-67016077 - 27 6.55e-05 GAGAGATGCA TGACTCA TAAATAGCCC chr12:29754587-29755087 + 30 6.55e-05 CAGAATTTCC TGACTCA TCTCAGCGTG chr10:75358952-75359452 + 43 6.55e-05 AGGTGTTAAT TGACTCA CTCCCTCTGC chr4:81808133-81808633 - 70 6.55e-05 ACCCAGTAAA TGACTCA GTGGGAGTTT chr5:125277476-125277976 + 44 6.55e-05 TAATCACATC TGACTCA GCCCTGAAGG chr1:67700640-67701140 - 66 6.55e-05 TAGATGGTGG TGACTCA TATTCACTAT chr12:92080467-92080967 - 13 6.55e-05 CTGTCGCATG TGACTCA GACATACTTT chr3:123344070-123344570 + 32 6.55e-05 ttgatgaatg tgactca tcaccctcca chr13:48727220-48727720 + 3 6.55e-05 TA TGACTCA AAGCAGGTTA chr16:4944725-4945225 - 42 6.55e-05 AGGCAGAGCA TGACTCA CCGTAGACCC chrX:23807173-23807673 + 15 6.55e-05 GCAAGATATG TGACTCA GTGTAGGAAA chr20:44018117-44018617 - 63 6.55e-05 TTCTCCCTCA TGACTCA GGAGCAGCTC chr2:209495970-209496470 - 7 6.55e-05 AAATGTGGAA TGACTCA CTCCCC chr1:177255304-177255804 + 33 6.55e-05 agaggggatg tgactca ttcacggtaa chr18:59516281-59516781 - 29 6.55e-05 GGAATGTTAA TGACTCA CGTCCATCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:114914221-11491472 6.6e-05 32_[-5]_61 chrX:38061242-38061742 6.6e-05 83_[+5]_10 chr3:190972921-190973421 6.6e-05 28_[-5]_65 chr5:125485025-125485525 6.6e-05 84_[+5]_9 chr6:115485321-115485821 6.6e-05 25_[+5]_68 chr22:24727032-24727532 6.6e-05 74_[-5]_19 chr10:87586149-87586649 6.6e-05 39_[-5]_54 chr10:63707202-63707702 6.6e-05 93_[-5] chr21:34845670-34846170 6.6e-05 28_[-5]_65 chr22:40711465-40711965 6.6e-05 37_[-5]_56 chr7:51606687-51607187 6.6e-05 24_[+5]_69 chr10:15704514-15705014 6.6e-05 41_[+5]_52 chr10:72097731-72098231 6.6e-05 6_[+5]_87 chr20:51934170-51934670 6.6e-05 81_[+5]_12 chr1:62311546-62312046 6.6e-05 16_[-5]_77 chr6:138088174-138088674 6.6e-05 25_[+5]_68 chr1:228902969-228903469 6.6e-05 58_[-5]_35 chr15:58332055-58332555 6.6e-05 86_[+5]_7 chr15:70507800-70508300 6.6e-05 5_[-5]_88 chr17:67978478-67978978 6.6e-05 81_[+5]_12 chr1:179930918-179931418 6.6e-05 83_[-5]_10 chr16:77409263-77409763 6.6e-05 56_[+5]_37 chr2:175805423-175805923 6.6e-05 81_[-5]_12 chr5:174371579-174372079 6.6e-05 14_[-5]_79 chr5:34608752-34609252 6.6e-05 47_[-5]_46 chr1:85297832-85298332 6.6e-05 74_[+5]_19 chr1:234700146-234700646 6.6e-05 53_[+5]_40 chr12:122368386-12236888 6.6e-05 86_[+5]_7 chr15:74546041-74546541 6.6e-05 52_[-5]_41 chr6:112231666-112232166 6.6e-05 73_[-5]_20 chr5:123814170-123814670 6.6e-05 13_[+5]_80 chr5:67015577-67016077 6.6e-05 26_[-5]_67 chr12:29754587-29755087 6.6e-05 29_[+5]_64 chr10:75358952-75359452 6.6e-05 42_[+5]_51 chr4:81808133-81808633 6.6e-05 69_[-5]_24 chr5:125277476-125277976 6.6e-05 43_[+5]_50 chr1:67700640-67701140 6.6e-05 65_[-5]_28 chr12:92080467-92080967 6.6e-05 12_[-5]_81 chr3:123344070-123344570 6.6e-05 31_[+5]_62 chr13:48727220-48727720 6.6e-05 2_[+5]_91 chr16:4944725-4945225 6.6e-05 41_[-5]_52 chrX:23807173-23807673 6.6e-05 14_[+5]_79 chr20:44018117-44018617 6.6e-05 62_[-5]_31 chr2:209495970-209496470 6.6e-05 6_[-5]_87 chr1:177255304-177255804 6.6e-05 32_[+5]_61 chr18:59516281-59516781 6.6e-05 28_[-5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACTCA width=7 seqs=46 chr12:114914221-11491472 ( 33) TGACTCA 1 chrX:38061242-38061742 ( 84) TGACTCA 1 chr3:190972921-190973421 ( 29) TGACTCA 1 chr5:125485025-125485525 ( 85) TGACTCA 1 chr6:115485321-115485821 ( 26) TGACTCA 1 chr22:24727032-24727532 ( 75) TGACTCA 1 chr10:87586149-87586649 ( 40) TGACTCA 1 chr10:63707202-63707702 ( 94) TGACTCA 1 chr21:34845670-34846170 ( 29) TGACTCA 1 chr22:40711465-40711965 ( 38) TGACTCA 1 chr7:51606687-51607187 ( 25) TGACTCA 1 chr10:15704514-15705014 ( 42) TGACTCA 1 chr10:72097731-72098231 ( 7) TGACTCA 1 chr20:51934170-51934670 ( 82) TGACTCA 1 chr1:62311546-62312046 ( 17) TGACTCA 1 chr6:138088174-138088674 ( 26) TGACTCA 1 chr1:228902969-228903469 ( 59) TGACTCA 1 chr15:58332055-58332555 ( 87) TGACTCA 1 chr15:70507800-70508300 ( 6) TGACTCA 1 chr17:67978478-67978978 ( 82) TGACTCA 1 chr1:179930918-179931418 ( 84) TGACTCA 1 chr16:77409263-77409763 ( 57) TGACTCA 1 chr2:175805423-175805923 ( 82) TGACTCA 1 chr5:174371579-174372079 ( 15) TGACTCA 1 chr5:34608752-34609252 ( 48) TGACTCA 1 chr1:85297832-85298332 ( 75) TGACTCA 1 chr1:234700146-234700646 ( 54) TGACTCA 1 chr12:122368386-12236888 ( 87) TGACTCA 1 chr15:74546041-74546541 ( 53) TGACTCA 1 chr6:112231666-112232166 ( 74) TGACTCA 1 chr5:123814170-123814670 ( 14) TGACTCA 1 chr5:67015577-67016077 ( 27) TGACTCA 1 chr12:29754587-29755087 ( 30) TGACTCA 1 chr10:75358952-75359452 ( 43) TGACTCA 1 chr4:81808133-81808633 ( 70) TGACTCA 1 chr5:125277476-125277976 ( 44) TGACTCA 1 chr1:67700640-67701140 ( 66) TGACTCA 1 chr12:92080467-92080967 ( 13) TGACTCA 1 chr3:123344070-123344570 ( 32) TGACTCA 1 chr13:48727220-48727720 ( 3) TGACTCA 1 chr16:4944725-4945225 ( 42) TGACTCA 1 chrX:23807173-23807673 ( 15) TGACTCA 1 chr20:44018117-44018617 ( 63) TGACTCA 1 chr2:209495970-209496470 ( 7) TGACTCA 1 chr1:177255304-177255804 ( 33) TGACTCA 1 chr18:59516281-59516781 ( 29) TGACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 56400 bayes= 10.6615 E= 3.4e-003 -1217 -1217 -1217 179 -1217 -1217 224 -1217 179 -1217 -1217 -1217 -1217 224 -1217 -1217 -1217 -1217 -1217 179 -1217 224 -1217 -1217 179 -1217 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 3.4e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCA MEME-5 regular expression -------------------------------------------------------------------------------- TGACTCA -------------------------------------------------------------------------------- Time 1816.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 width = 30 sites = 8 llr = 187 E-value = 6.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 Description -------------------------------------------------------------------------------- Simplified A :4:899::6:::4539:91311::::34:a pos.-specific C ::3:::1835143381a1:518a1::5:5: probability G 16331:81113:33::::9:6::1aa353: matrix T 9:5::111:4661::::::311:8:::13: bits 2.2 * * ** 2.0 * * ** 1.8 * * ** * 1.6 * * * ** * Relative 1.3 * ** ***** * ** * Entropy 1.1 ** ***** ***** ** ** * (33.7 bits) 0.9 ** ***** * ***** ***** * 0.7 ** ********* ***** ********** 0.4 ************ ***************** 0.2 ************ ***************** 0.0 ------------------------------ Multilevel TGTAAAGCACTTAACACAGCGCCTGGCGCA consensus ACG CTGCCCA A AAG sequence G GG T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr3:194350325-194350825 + 40 1.45e-15 agatagtaaa tagaaagcccttaacacagcgcctggcaca tactgaatgt chr17:2602506-2603006 - 64 1.46e-14 GAATACT TGTAAAGCACTTAAAACAGAGCCTGGCGTA TTAGTAAGTG chr9:18976681-18977181 + 54 8.36e-13 CCAAaacaaa tgtgaagcacttagcacaatgcctggctca cggCTGTTAT chr7:135716570-135717070 + 69 1.10e-11 atatagtgtg tgtaaatgacctcccacagtgcctggcata tg chr11:27209521-27210021 - 18 2.12e-11 TGGCTCTGGG TGGGAAGCATTCTCCCCAGAGACTGGGGCA GGGTATGACT chr15:70526426-70526926 + 70 1.41e-10 CTCAAGACCA GACAAAGCCTGCCGAACAGCCCCCGGGGGA A chr1:85274861-85275361 + 27 2.70e-10 gtgggaacat tgtaaactgtgtgacacagcatctggaaca taggaggcCT chr2:31008532-31009032 + 70 5.41e-10 ATTGTGTGAT TACAGTGCAGTCGACACCGCTCCGGGAGGA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:194350325-194350825 1.4e-15 39_[+6]_31 chr17:2602506-2603006 1.5e-14 63_[-6]_7 chr9:18976681-18977181 8.4e-13 53_[+6]_17 chr7:135716570-135717070 1.1e-11 68_[+6]_2 chr11:27209521-27210021 2.1e-11 17_[-6]_53 chr15:70526426-70526926 1.4e-10 69_[+6]_1 chr1:85274861-85275361 2.7e-10 26_[+6]_44 chr2:31008532-31009032 5.4e-10 69_[+6]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRBAAAGCAYTYVVCACAGHGCCTGGVRBA width=30 seqs=8 chr3:194350325-194350825 ( 40) TAGAAAGCCCTTAACACAGCGCCTGGCACA 1 chr17:2602506-2603006 ( 64) TGTAAAGCACTTAAAACAGAGCCTGGCGTA 1 chr9:18976681-18977181 ( 54) TGTGAAGCACTTAGCACAATGCCTGGCTCA 1 chr7:135716570-135717070 ( 69) TGTAAATGACCTCCCACAGTGCCTGGCATA 1 chr11:27209521-27210021 ( 18) TGGGAAGCATTCTCCCCAGAGACTGGGGCA 1 chr15:70526426-70526926 ( 70) GACAAAGCCTGCCGAACAGCCCCCGGGGGA 1 chr1:85274861-85275361 ( 27) TGTAAACTGTGTGACACAGCATCTGGAACA 1 chr2:31008532-31009032 ( 70) TACAGTGCAGTCGACACCGCTCCGGGAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.3783 E= 6.1e+000 -965 -965 -76 160 38 -965 156 -965 -965 24 24 79 138 -965 24 -965 160 -965 -76 -965 160 -965 -965 -121 -965 -76 183 -121 -965 183 -76 -121 111 24 -76 -965 -965 124 -76 38 -965 -76 24 111 -965 83 -965 111 38 24 24 -121 79 24 24 -965 -21 183 -965 -965 160 -76 -965 -965 -965 224 -965 -965 160 -76 -965 -965 -121 -965 205 -965 -21 124 -965 -21 -121 -76 156 -121 -121 183 -965 -121 -965 224 -965 -965 -965 -76 -76 138 -965 -965 224 -965 -965 -965 224 -965 -21 124 24 -965 38 -965 124 -121 -965 124 24 -21 179 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 8 E= 6.1e+000 0.000000 0.000000 0.125000 0.875000 0.375000 0.000000 0.625000 0.000000 0.000000 0.250000 0.250000 0.500000 0.750000 0.000000 0.250000 0.000000 0.875000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.125000 0.750000 0.125000 0.000000 0.750000 0.125000 0.125000 0.625000 0.250000 0.125000 0.000000 0.000000 0.500000 0.125000 0.375000 0.000000 0.125000 0.250000 0.625000 0.000000 0.375000 0.000000 0.625000 0.375000 0.250000 0.250000 0.125000 0.500000 0.250000 0.250000 0.000000 0.250000 0.750000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.500000 0.000000 0.250000 0.125000 0.125000 0.625000 0.125000 0.125000 0.750000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.125000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.375000 0.000000 0.500000 0.125000 0.000000 0.500000 0.250000 0.250000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRBAAAGCAYTYVVCACAGHGCCTGGVRBA MEME-6 regular expression -------------------------------------------------------------------------------- T[GA][TCG][AG]AAGC[AC][CT][TG][TC][ACG][ACG][CA]ACAG[CAT]GCCTGG[CAG][GA][CGT]A -------------------------------------------------------------------------------- Time 2146.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTTKKGADGATTAARTRAKA MEME-7 width = 22 sites = 15 llr = 235 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 Description -------------------------------------------------------------------------------- Simplified A 1::::1:1a3:8:17a4:4927 pos.-specific C 2::1211::11:3:1:11::1: probability G ::921349:391::::5:5151 matrix T 7a177551:3:1792:191:33 bits 2.2 2.0 1.8 * * * 1.6 ** ** * * * Relative 1.3 ** ** * * * * Entropy 1.1 ** ** * ** * * * (22.6 bits) 0.9 *** * ** **** * * * 0.7 ***** *** ****** *** * 0.4 ***** *** ********** * 0.2 ********************** 0.0 ---------------------- Multilevel TTGTTTTGAAGATTAAGTGAGA consensus C GCGG T C T A A TT sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:168147142-168147642 + 42 2.19e-10 AATATTGTGA TTGCTTTGAAGATTAAGTGAAA ATATCAAAGG chr15:70494072-70494572 - 52 3.91e-10 TCATCCCGGG TTGTCAGGAGGATTAAATGAGA TAATGCTCAT chr15:69143642-69144142 - 62 5.85e-10 TCCCAGAGGC TTGTCGTGAGGATTTAATGAGA TCAAGCCTAT chr15:55825189-55825689 + 48 2.70e-09 tctcactgag tttttatgaagattaaatgaga tccacataaa chr5:14156550-14157050 - 34 5.28e-09 TTCATCTGTT TTGTTTGGATGACTAACTGACA AGGCACTGAG chr1:64229196-64229696 - 38 1.77e-08 TCTCAAGTGG TTGTTTTGAGCACTCAGTGAAA TCATGCATGA chr1:85274861-85275361 + 1 2.13e-08 . ttgttgcgaaggttaagtggga acattgtaaa chr7:116218110-116218610 + 78 2.13e-08 TTTCCCTTGC TTTGTTTGATGATAAAGTGATA T chr5:54302197-54302697 + 32 2.80e-08 gttaacagca ctgttgggaggattaaattagg tgatccaagg chr2:175805423-175805923 + 5 5.57e-08 gggg ttgttctgaagattaaacaatt taatgcacat chr17:32298891-32299391 + 26 8.32e-08 CAAGGGAGCT TTGTGTGTATGTTTAAGTAAGA TCTTAATCCT chr10:75613678-75614178 - 77 9.72e-08 CC CTGTTTGGATGATTTATTAGGT GCAGAAAGCA chr15:36925631-36926131 + 49 1.31e-07 TGCTGTGAAA TTGGTTTAATGACAAAGTAATA AAATTGCTAT chr15:58361171-58361671 - 68 2.16e-07 GAGGAGGATC CTGGTGGGAACACTTAGTAATT TGAGATCGTA chr8:37517073-37517573 - 30 9.90e-07 GTGAGGTGAC ATGCCTTGACGTTTAAATAAAT CATTTTAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:168147142-168147642 2.2e-10 41_[+7]_37 chr15:70494072-70494572 3.9e-10 51_[-7]_27 chr15:69143642-69144142 5.9e-10 61_[-7]_17 chr15:55825189-55825689 2.7e-09 47_[+7]_31 chr5:14156550-14157050 5.3e-09 33_[-7]_45 chr1:64229196-64229696 1.8e-08 37_[-7]_41 chr1:85274861-85275361 2.1e-08 [+7]_78 chr7:116218110-116218610 2.1e-08 77_[+7]_1 chr5:54302197-54302697 2.8e-08 31_[+7]_47 chr2:175805423-175805923 5.6e-08 4_[+7]_74 chr17:32298891-32299391 8.3e-08 25_[+7]_53 chr10:75613678-75614178 9.7e-08 76_[-7]_2 chr15:36925631-36926131 1.3e-07 48_[+7]_30 chr15:58361171-58361671 2.2e-07 67_[-7]_11 chr8:37517073-37517573 9.9e-07 29_[-7]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTKKGADGATTAARTRAKA width=22 seqs=15 chr6:168147142-168147642 ( 42) TTGCTTTGAAGATTAAGTGAAA 1 chr15:70494072-70494572 ( 52) TTGTCAGGAGGATTAAATGAGA 1 chr15:69143642-69144142 ( 62) TTGTCGTGAGGATTTAATGAGA 1 chr15:55825189-55825689 ( 48) TTTTTATGAAGATTAAATGAGA 1 chr5:14156550-14157050 ( 34) TTGTTTGGATGACTAACTGACA 1 chr1:64229196-64229696 ( 38) TTGTTTTGAGCACTCAGTGAAA 1 chr1:85274861-85275361 ( 1) TTGTTGCGAAGGTTAAGTGGGA 1 chr7:116218110-116218610 ( 78) TTTGTTTGATGATAAAGTGATA 1 chr5:54302197-54302697 ( 32) CTGTTGGGAGGATTAAATTAGG 1 chr2:175805423-175805923 ( 5) TTGTTCTGAAGATTAAACAATT 1 chr17:32298891-32299391 ( 26) TTGTGTGTATGTTTAAGTAAGA 1 chr10:75613678-75614178 ( 77) CTGTTTGGATGATTTATTAGGT 1 chr15:36925631-36926131 ( 49) TTGGTTTAATGACAAAGTAATA 1 chr15:58361171-58361671 ( 68) CTGGTGGGAACACTTAGTAATT 1 chr8:37517073-37517573 ( 30) ATGCCTTGACGTTTAAATAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.5503 E= 1.2e+001 -211 -8 -1055 134 -1055 -1055 -1055 179 -1055 -1055 204 -111 -1055 -66 -8 121 -1055 -8 -166 134 -111 -166 34 89 -1055 -166 92 89 -211 -1055 204 -211 179 -1055 -1055 -1055 21 -166 34 21 -1055 -66 204 -1055 147 -1055 -166 -111 -1055 34 -1055 134 -111 -1055 -1055 159 134 -166 -1055 -53 179 -1055 -1055 -1055 47 -166 114 -211 -1055 -166 -1055 169 47 -1055 134 -211 159 -1055 -66 -1055 -53 -166 114 -11 121 -1055 -166 -11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 15 E= 1.2e+001 0.066667 0.200000 0.000000 0.733333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.133333 0.200000 0.666667 0.000000 0.200000 0.066667 0.733333 0.133333 0.066667 0.266667 0.533333 0.000000 0.066667 0.400000 0.533333 0.066667 0.000000 0.866667 0.066667 1.000000 0.000000 0.000000 0.000000 0.333333 0.066667 0.266667 0.333333 0.000000 0.133333 0.866667 0.000000 0.800000 0.000000 0.066667 0.133333 0.000000 0.266667 0.000000 0.733333 0.133333 0.000000 0.000000 0.866667 0.733333 0.066667 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.400000 0.066667 0.466667 0.066667 0.000000 0.066667 0.000000 0.933333 0.400000 0.000000 0.533333 0.066667 0.866667 0.000000 0.133333 0.000000 0.200000 0.066667 0.466667 0.266667 0.666667 0.000000 0.066667 0.266667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKKGADGATTAARTRAKA MEME-7 regular expression -------------------------------------------------------------------------------- [TC]TG[TG][TC][TG][TG]GA[ATG]GA[TC]T[AT]A[GA]T[GA]A[GTA][AT] -------------------------------------------------------------------------------- Time 2476.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CAYRCACRCACACACA MEME-8 width = 16 sites = 9 llr = 148 E-value = 8.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 Description -------------------------------------------------------------------------------- Simplified A :916:a:7:9:a:919 pos.-specific C 8:4:9:8:81a:a19: probability G :1:4::232::::::1 matrix T 2:4:1::::::::::: bits 2.2 * * 2.0 * * 1.8 ** *** * 1.6 *** * *** * Relative 1.3 ** *** ******** Entropy 1.1 ** ************ (23.8 bits) 0.9 ** ************* 0.7 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CACACACACACACACA consensus T TG GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr5:10606901-10607401 + 59 1.40e-10 GCTACTGTTA CACGCACACACACAca ctcagaatag chr20:53611352-53611852 + 32 3.31e-10 CATTTAAAAa cacacacacacacaca cacaccacCT chr10:72097731-72098231 + 49 5.22e-10 GGACACAGAG CATGCACACACACACA GAACAACCCA chr3:194134843-194135343 + 13 8.86e-10 ctcactcaca cacgcacgcacacaca caTCCTCCCG chr22:42964959-42965459 - 32 3.93e-08 GAATTTCATC CACATAGACACACACA GTGGGTGCTA chr9:23731384-23731884 - 45 4.64e-08 AACTTACATG TATACACGCCCACACA TGGTTCTTCA chr1:116476295-116476795 - 61 5.56e-08 TGTGTGCTGT CATGCAGGCACACAAA GATAAGGGCA chr3:169657253-169657753 + 17 7.13e-08 GAAATAATTT TAAACACAGACACACA ATGAGTTTAT chr14:54818495-54818995 - 29 2.50e-07 AATATGGCTG CGTACACAGACACCCG AAGCTGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:10606901-10607401 1.4e-10 58_[+8]_26 chr20:53611352-53611852 3.3e-10 31_[+8]_53 chr10:72097731-72098231 5.2e-10 48_[+8]_36 chr3:194134843-194135343 8.9e-10 12_[+8]_72 chr22:42964959-42965459 3.9e-08 31_[-8]_53 chr9:23731384-23731884 4.6e-08 44_[-8]_40 chr1:116476295-116476795 5.6e-08 60_[-8]_24 chr3:169657253-169657753 7.1e-08 16_[+8]_68 chr14:54818495-54818995 2.5e-07 28_[-8]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAYRCACRCACACACA width=16 seqs=9 chr5:10606901-10607401 ( 59) CACGCACACACACACA 1 chr20:53611352-53611852 ( 32) CACACACACACACACA 1 chr10:72097731-72098231 ( 49) CATGCACACACACACA 1 chr3:194134843-194135343 ( 13) CACGCACGCACACACA 1 chr22:42964959-42965459 ( 32) CACATAGACACACACA 1 chr9:23731384-23731884 ( 45) TATACACGCCCACACA 1 chr1:116476295-116476795 ( 61) CATGCAGGCACACAAA 1 chr3:169657253-169657753 ( 17) TAAACACAGACACACA 1 chr14:54818495-54818995 ( 29) CGTACACAGACACCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 13.3161 E= 8.0e+001 -982 188 -982 -38 162 -982 -93 -982 -138 107 -982 62 94 -982 107 -982 -982 207 -982 -138 179 -982 -982 -982 -982 188 7 -982 121 -982 66 -982 -982 188 7 -982 162 -93 -982 -982 -982 224 -982 -982 179 -982 -982 -982 -982 224 -982 -982 162 -93 -982 -982 -138 207 -982 -982 162 -982 -93 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 9 E= 8.0e+001 0.000000 0.777778 0.000000 0.222222 0.888889 0.000000 0.111111 0.000000 0.111111 0.444444 0.000000 0.444444 0.555556 0.000000 0.444444 0.000000 0.000000 0.888889 0.000000 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.777778 0.222222 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYRCACRCACACACA MEME-8 regular expression -------------------------------------------------------------------------------- [CT]A[CT][AG]CA[CG][AG][CG]ACACACA -------------------------------------------------------------------------------- Time 2803.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAGGGG MEME-9 width = 9 sites = 39 llr = 381 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 Description -------------------------------------------------------------------------------- Simplified A ::::7::3: pos.-specific C 3a791:::: probability G :::1:a87a matrix T 7:3:3:2:: bits 2.2 * * 2.0 * * * * 1.8 * * * * 1.6 * * * * Relative 1.3 *** ** * Entropy 1.1 **** **** (14.1 bits) 0.9 **** **** 0.7 ********* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel TCCCAGGGG consensus C T T TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr19:2983984-2984484 - 78 1.56e-06 CAGCAGCAAA TCCCAGGGG AGCCCTCTCC chr10:73966183-73966683 + 12 1.56e-06 ATAAGCTTCT TCCCAGGGG AAGTTGTGTC chr5:14156550-14157050 + 82 2.69e-06 CTCTGCAGTT CCCCAGGGG CATGTTTAAG chr1:85297832-85298332 - 12 2.69e-06 TTACATAAAT CCCCAGGGG TTCACTGTGA chr4:156815648-156816148 - 77 2.69e-06 CTCCACAGGT CCCCAGGGG TGTGTTAGAG chr8:27939838-27940338 + 72 2.69e-06 ACCATCATTC CCCCAGGGG CTCCACATAG chr1:228781066-228781566 + 48 4.25e-06 ATATGTCAAC TCCCTGGGG ATGTATCCCG chr16:12120436-12120936 + 50 4.25e-06 TATGTTTGGG TCCCTGGGG ACTGGAGGCT chr1:61887294-61887794 - 56 4.25e-06 ATTCTCTCAC TCCCTGGGG CATTGGAAAA chr18:50629032-50629532 + 48 6.38e-06 AGCAGAAAGC TCCCAGGAG GCTGGCGTTT chr10:2882566-2883066 + 60 6.38e-06 TTTATGGCCC TCCCAGGAG ATTTCATTCA chr2:175806987-175807487 - 73 6.38e-06 TTAGAAAGCC TCCCAGGAG GCGATGTGCT chr5:112388751-112389251 + 91 6.38e-06 TAATTTCTGA TCCCAGGAG A chr6:52243258-52243758 + 63 8.51e-06 ACTCCtgtaa tctcagggg aatcattaaa chr16:4944725-4945225 - 72 8.51e-06 TGAGGCACAT TCTCAGGGG ATGACTCAGG chr5:94469761-94470261 + 22 1.18e-05 TTTGTAGTCA TCCCAGTGG TGGCTCTCAG chr6:150196077-150196577 - 15 1.18e-05 TTACTTTGAG TCCCAGTGG CTCTGAACCA chr6:8939605-8940105 + 32 1.33e-05 TTGTTGATGG CCCCAGGAG CTCATGTAAT chr6:21749746-21750246 - 87 1.33e-05 GAGGG CCCCAGGAG CACTTAAAAG chr5:124734986-124735486 + 51 1.49e-05 TAGAATTCTG CCTCAGGGG AACGTTGTCA chr17:27915608-27916108 + 75 1.49e-05 CTGGGTCCAG CCTCAGGGG ACACAGTGGG chr4:144356317-144356817 - 75 1.64e-05 GGAGCATGAC CCCCAGTGG CCACAGAAAG chr3:113168299-113168799 + 28 1.64e-05 ATTTTATATG CCCCAGTGG AAAACCTTTA chr1:241460439-241460939 + 2 1.86e-05 G TCCCTGGAG GACTCTTGCT chr20:57579945-57580445 - 2 1.86e-05 TCATCAATCT TCCCTGGAG A chr12:51405731-51406231 + 74 1.86e-05 ACTGTCTGGT TCCCTGGAG ATATATAAGA chr13:37046921-37047421 + 87 2.47e-05 GTAAATAACT TCTCAGGAG GAAGT chr1:167658652-167659152 + 48 2.47e-05 tggggtagat tctcaggag tgtagggtga chr8:108689368-108689868 - 58 2.47e-05 TGATATCTTT TCTCAGGAG AGAGGATTTC chr6:82260170-82260670 - 75 2.69e-05 GCATGTCTGC TCCCTGTGG ATTTTAATTT chr5:160008637-160009137 - 80 2.69e-05 AGGAAGTCTG TCCCTGTGG TGTTCGTTTC chr11:34222874-34223374 + 33 2.69e-05 AAAAGCCAGC TCCCTGTGG GGCTATAAAC chr5:136729911-136730411 - 84 3.67e-05 GTCACATC TCTCAGTGG GAAGCCAGAC chr6:91299548-91300048 - 83 3.67e-05 TAAATTGCC TCTCAGTGG GTGGCTATTA chr17:67978478-67978978 - 55 3.67e-05 CTCTACTGAG CCTCTGGGG AGTGCTCCAT chr5:82406435-82406935 - 30 4.19e-05 AGTTCACAGC TCCGAGGGG GAAACAGTGG chr17:76029392-76029892 - 32 5.62e-05 TAGCCCTTAA TCTCCGGGG CGTGTGAGGG chr8:29126517-29127017 + 57 7.76e-05 TAGTCCCACT CGCCAGGGG AAATCAAACA chr9:82923409-82923909 - 34 1.22e-04 TTTCAGCAGC TCCGCGGGG CTTCGGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2983984-2984484 1.6e-06 77_[-9]_14 chr10:73966183-73966683 1.6e-06 11_[+9]_80 chr5:14156550-14157050 2.7e-06 81_[+9]_10 chr1:85297832-85298332 2.7e-06 11_[-9]_80 chr4:156815648-156816148 2.7e-06 76_[-9]_15 chr8:27939838-27940338 2.7e-06 71_[+9]_20 chr1:228781066-228781566 4.2e-06 47_[+9]_44 chr16:12120436-12120936 4.2e-06 49_[+9]_42 chr1:61887294-61887794 4.2e-06 55_[-9]_36 chr18:50629032-50629532 6.4e-06 47_[+9]_44 chr10:2882566-2883066 6.4e-06 59_[+9]_32 chr2:175806987-175807487 6.4e-06 72_[-9]_19 chr5:112388751-112389251 6.4e-06 90_[+9]_1 chr6:52243258-52243758 8.5e-06 62_[+9]_29 chr16:4944725-4945225 8.5e-06 71_[-9]_20 chr5:94469761-94470261 1.2e-05 21_[+9]_70 chr6:150196077-150196577 1.2e-05 14_[-9]_77 chr6:8939605-8940105 1.3e-05 31_[+9]_60 chr6:21749746-21750246 1.3e-05 86_[-9]_5 chr5:124734986-124735486 1.5e-05 50_[+9]_41 chr17:27915608-27916108 1.5e-05 74_[+9]_17 chr4:144356317-144356817 1.6e-05 74_[-9]_17 chr3:113168299-113168799 1.6e-05 27_[+9]_64 chr1:241460439-241460939 1.9e-05 1_[+9]_90 chr20:57579945-57580445 1.9e-05 1_[-9]_90 chr12:51405731-51406231 1.9e-05 73_[+9]_18 chr13:37046921-37047421 2.5e-05 86_[+9]_5 chr1:167658652-167659152 2.5e-05 47_[+9]_44 chr8:108689368-108689868 2.5e-05 57_[-9]_34 chr6:82260170-82260670 2.7e-05 74_[-9]_17 chr5:160008637-160009137 2.7e-05 79_[-9]_12 chr11:34222874-34223374 2.7e-05 32_[+9]_59 chr5:136729911-136730411 3.7e-05 83_[-9]_8 chr6:91299548-91300048 3.7e-05 82_[-9]_9 chr17:67978478-67978978 3.7e-05 54_[-9]_37 chr5:82406435-82406935 4.2e-05 29_[-9]_62 chr17:76029392-76029892 5.6e-05 31_[-9]_60 chr8:29126517-29127017 7.8e-05 56_[+9]_35 chr9:82923409-82923909 0.00012 33_[-9]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAGGGG width=9 seqs=39 chr19:2983984-2984484 ( 78) TCCCAGGGG 1 chr10:73966183-73966683 ( 12) TCCCAGGGG 1 chr5:14156550-14157050 ( 82) CCCCAGGGG 1 chr1:85297832-85298332 ( 12) CCCCAGGGG 1 chr4:156815648-156816148 ( 77) CCCCAGGGG 1 chr8:27939838-27940338 ( 72) CCCCAGGGG 1 chr1:228781066-228781566 ( 48) TCCCTGGGG 1 chr16:12120436-12120936 ( 50) TCCCTGGGG 1 chr1:61887294-61887794 ( 56) TCCCTGGGG 1 chr18:50629032-50629532 ( 48) TCCCAGGAG 1 chr10:2882566-2883066 ( 60) TCCCAGGAG 1 chr2:175806987-175807487 ( 73) TCCCAGGAG 1 chr5:112388751-112389251 ( 91) TCCCAGGAG 1 chr6:52243258-52243758 ( 63) TCTCAGGGG 1 chr16:4944725-4945225 ( 72) TCTCAGGGG 1 chr5:94469761-94470261 ( 22) TCCCAGTGG 1 chr6:150196077-150196577 ( 15) TCCCAGTGG 1 chr6:8939605-8940105 ( 32) CCCCAGGAG 1 chr6:21749746-21750246 ( 87) CCCCAGGAG 1 chr5:124734986-124735486 ( 51) CCTCAGGGG 1 chr17:27915608-27916108 ( 75) CCTCAGGGG 1 chr4:144356317-144356817 ( 75) CCCCAGTGG 1 chr3:113168299-113168799 ( 28) CCCCAGTGG 1 chr1:241460439-241460939 ( 2) TCCCTGGAG 1 chr20:57579945-57580445 ( 2) TCCCTGGAG 1 chr12:51405731-51406231 ( 74) TCCCTGGAG 1 chr13:37046921-37047421 ( 87) TCTCAGGAG 1 chr1:167658652-167659152 ( 48) TCTCAGGAG 1 chr8:108689368-108689868 ( 58) TCTCAGGAG 1 chr6:82260170-82260670 ( 75) TCCCTGTGG 1 chr5:160008637-160009137 ( 80) TCCCTGTGG 1 chr11:34222874-34223374 ( 33) TCCCTGTGG 1 chr5:136729911-136730411 ( 84) TCTCAGTGG 1 chr6:91299548-91300048 ( 83) TCTCAGTGG 1 chr17:67978478-67978978 ( 55) CCTCTGGGG 1 chr5:82406435-82406935 ( 30) TCCGAGGGG 1 chr17:76029392-76029892 ( 32) TCTCCGGGG 1 chr8:29126517-29127017 ( 57) CGCCAGGGG 1 chr9:82923409-82923909 ( 34) TCCGCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 10.6897 E= 1.2e+004 -1193 54 -1193 126 -1193 220 -304 -1193 -1193 176 -1193 -3 -1193 217 -204 -1193 126 -204 -1193 -17 -1193 -1193 224 -1193 -1193 -1193 186 -32 9 -1193 171 -1193 -1193 -1193 224 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 39 E= 1.2e+004 0.000000 0.307692 0.000000 0.692308 0.000000 0.974359 0.025641 0.000000 0.000000 0.717949 0.000000 0.282051 0.000000 0.948718 0.051282 0.000000 0.692308 0.051282 0.000000 0.256410 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.769231 0.230769 0.307692 0.000000 0.692308 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGGGG MEME-9 regular expression -------------------------------------------------------------------------------- [TC]C[CT]C[AT]G[GT][GA]G -------------------------------------------------------------------------------- Time 3130.20 secs. ******************************************************************************** ******************************************************************************** MOTIF SYCATAAATYWKWNTG MEME-10 width = 16 sites = 50 llr = 511 E-value = 8.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 2:3a:9aa2:4143:2 pos.-specific C 466::::::3:2:2:1 probability G 4:1:::::22121237 matrix T :41:a1::6554527: bits 2.2 2.0 1.8 ** * 1.6 ** ** Relative 1.3 ***** Entropy 1.1 * ***** ** (14.7 bits) 0.9 * ***** ** 0.7 ** ***** * ** 0.4 *********** ** 0.2 ************* ** 0.0 ---------------- Multilevel GCCATAAATTTTTATG consensus CTA ACAGACGA sequence A GG T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr17:48577408-48577908 - 67 1.09e-08 AATTACATCC CCCATAAATTTTTATG GCCTGGTGGG chr5:82406435-82406935 + 85 4.79e-08 GGCTGGGTTG CCCATAAATTTGAATG chr10:121865481-12186598 + 30 1.40e-07 AAGCTCTTTT CCCATAAAGCTTAATG AGCTCTATTA chr10:121831742-12183224 + 3 2.84e-07 TG ACCATAAATTATTCTG AATTGCCCAG chr10:68106666-68107166 - 39 2.84e-07 TTAAGCCTTC CCCATAAAGTTGAGTG GCTCATCCAA chr17:66570802-66571302 + 30 2.84e-07 caaCTGCAGA GTCATAAATCTGTTTG CATAAACCAC chr12:54054305-54054805 + 34 3.53e-07 AATTACATCC CCCATAAATTTTATGG CTTAGCTACT chr5:125659260-125659760 - 19 7.47e-07 GTGCTATCAA CCCATAAATTTTAATA ATTTTATAAA chr15:66886245-66886745 - 43 8.80e-07 AAACATGAGC CTCATAAATGAGTCTG GAAATGTGAT chr12:54033461-54033961 + 1 1.66e-06 . GCCATAAATTTTACGA TCCAGGCATC chr6:11270217-11270717 - 76 1.66e-06 TCTCCAGCT GTCATAAAAGTGTCTG CTTGTTTATT chr14:32308052-32308552 - 6 1.66e-06 TACACTGGCA GCAATAAATTTATGTG AACCA chr1:38724121-38724621 - 50 1.92e-06 ATCTCACGCA GCAATAAAGCTGTTTG CCTAGGAAGC chr7:25777831-25778331 + 22 1.92e-06 TGTTTACGTT GCCATAAATTAAAGGG CATGCTTTTT chr10:75613678-75614178 - 49 2.21e-06 AGAAAGCATA CTGATAAATTTTACTG CATTTCCCTG chr8:37479291-37479791 + 2 2.21e-06 G CTGATAAATTTTACTG CAAGTCCCCG chr7:114653398-114653898 - 24 2.55e-06 AGTTACTGAA ACCATAAATTAGAAGG CCCATGGTGT chr12:51405731-51406231 + 12 2.90e-06 TTAAATTAAG GCCATAAAATAGGGTG TGAGTGCAGC chr1:64514059-64514559 - 23 4.75e-06 TTACCAACAA GTGATAAATCACTCTG AATTTCCAAG chr2:207683811-207684311 + 78 6.68e-06 GTACTAGGAA GCAATAAATGACAAGG ACTCACA chr12:89769185-89769685 - 25 6.68e-06 GACCCACCAA GCCATAAAGTTAGTTG CGCACAGCAG chr12:53739500-53740000 - 61 7.43e-06 GCGGAAAGTC GTCATTAATTTCTCTG AATTACACCA chr15:67720517-67721017 - 18 7.43e-06 GAAGCAAAGG CCCATAAAATACACTA ATTACTGGAA chr8:37302614-37303114 + 8 9.15e-06 GGAACAT GCAATAAATCATTAGA ATGCCAATAA chr2:112869319-112869819 - 66 9.15e-06 AAGAATAACT CCTATAAATGATAATG AGAATAATTA chr22:24402554-24403054 - 66 1.01e-05 TTAATTAAGG GCCATAAAATATACTC CCAAATACCA chr3:190972921-190973421 + 72 1.11e-05 gttgttttaa gccattaagtttaagg gtaatttgtt chr2:19667533-19668033 - 28 1.22e-05 TAGGTTTCCC ACCATAAAACGTTATG TTGTTTACAC chr8:37703291-37703791 - 16 1.22e-05 ACGGCTAGCC CTCATTAATCACTCTG ACAGTCCTAA chr5:59021114-59021614 + 51 1.22e-05 CTGGTAAGGT CTCATAAATCACCATG ACTGGGTATT chr15:55694764-55695264 + 77 1.22e-05 CCTTGCAAAC ACAATAAATGTAAGTG CCTATTTT chr3:42819882-42820382 + 25 1.34e-05 AAATTGAGGA CTCATAAATGTAGTTG ACATCTAAAT chr9:95721050-95721550 + 72 1.34e-05 ATTTAACTGT ATCATAAAACATTTGG AGGACATAGC chr3:194134843-194135343 + 59 1.74e-05 AGCCGCGGCG GCAATAAAACATCCTG GCACGTGCTC chr13:99677542-99678042 - 57 1.74e-05 GCAAAAAAGG GCTATAAATCTTTTTA TGTACAAATA chr6:16849338-16849838 - 63 2.05e-05 AGATAAGCAG GCAATTAATGAGAGTG CAATTGTTAT chr10:22552784-22553284 + 78 2.22e-05 ATAATCCTAC CTCATAAAACTCTGGA CACCATG chrX:136057527-136058027 - 77 2.22e-05 GACAACAC CTAATAAAACTTTTTA TTGGAAACAT chr8:28445242-28445742 - 11 2.40e-05 AATTTGAAGG ACAATAAAAGTTGATG GTGATACATG chr5:14439319-14439819 + 69 2.40e-05 TTTCCTTTAG GTCATAATTTTTAGTG CTTTTTGCTA chr17:75105442-75105942 + 9 2.79e-05 CCGAGGGA ATGATAAAACAGAATG TGTTTGAATT chr7:33669144-33669644 - 64 3.22e-05 TTAAACGCTA GTGATAAATTTGTTGA TCTTGCTCTA chr1:177340505-177341005 - 27 3.68e-05 TGTAACAAGC CTCATAAAGTTTGATC GTGCTTGCTA chr4:147768088-147768588 - 30 3.93e-05 ATTTTACAAC GTAATAAAGTAATGTA AGTACTGCCA chr8:71711444-71711944 + 75 3.93e-05 TGGCACTGCC ACTATAAATCTCATGG CCCAACAACC chr10:99519974-99520474 + 77 4.46e-05 TTACTTTACC GCGATAAAGCGCTGGG CTTCCTGG chr1:3402103-3402603 - 79 4.74e-05 GTGCAT ATAATAAATTATTGTC GTCAAGGTCA chr7:51606687-51607187 - 6 5.03e-05 TGAGTCAATA CTCATAAAGGGTTTTA TGAGG chr11:123213185-12321368 - 32 5.33e-05 GTTCCACAGG GCAATAAAAGTATAGA TTACACTTGC chr8:71355233-71355733 - 56 5.64e-05 AAACAGAGGA ACAATTAAGTAGTTTG CCAGAGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:48577408-48577908 1.1e-08 66_[-10]_18 chr5:82406435-82406935 4.8e-08 84_[+10] chr10:121865481-12186598 1.4e-07 29_[+10]_55 chr10:121831742-12183224 2.8e-07 2_[+10]_82 chr10:68106666-68107166 2.8e-07 38_[-10]_46 chr17:66570802-66571302 2.8e-07 29_[+10]_55 chr12:54054305-54054805 3.5e-07 33_[+10]_51 chr5:125659260-125659760 7.5e-07 18_[-10]_66 chr15:66886245-66886745 8.8e-07 42_[-10]_42 chr12:54033461-54033961 1.7e-06 [+10]_84 chr6:11270217-11270717 1.7e-06 75_[-10]_9 chr14:32308052-32308552 1.7e-06 5_[-10]_79 chr1:38724121-38724621 1.9e-06 49_[-10]_35 chr7:25777831-25778331 1.9e-06 21_[+10]_63 chr10:75613678-75614178 2.2e-06 48_[-10]_36 chr8:37479291-37479791 2.2e-06 1_[+10]_83 chr7:114653398-114653898 2.5e-06 23_[-10]_61 chr12:51405731-51406231 2.9e-06 11_[+10]_73 chr1:64514059-64514559 4.8e-06 22_[-10]_62 chr2:207683811-207684311 6.7e-06 77_[+10]_7 chr12:89769185-89769685 6.7e-06 24_[-10]_60 chr12:53739500-53740000 7.4e-06 60_[-10]_24 chr15:67720517-67721017 7.4e-06 17_[-10]_67 chr8:37302614-37303114 9.1e-06 7_[+10]_77 chr2:112869319-112869819 9.1e-06 65_[-10]_19 chr22:24402554-24403054 1e-05 65_[-10]_19 chr3:190972921-190973421 1.1e-05 71_[+10]_13 chr2:19667533-19668033 1.2e-05 27_[-10]_57 chr8:37703291-37703791 1.2e-05 15_[-10]_69 chr5:59021114-59021614 1.2e-05 50_[+10]_34 chr15:55694764-55695264 1.2e-05 76_[+10]_8 chr3:42819882-42820382 1.3e-05 24_[+10]_60 chr9:95721050-95721550 1.3e-05 71_[+10]_13 chr3:194134843-194135343 1.7e-05 58_[+10]_26 chr13:99677542-99678042 1.7e-05 56_[-10]_28 chr6:16849338-16849838 2.1e-05 62_[-10]_22 chr10:22552784-22553284 2.2e-05 77_[+10]_7 chrX:136057527-136058027 2.2e-05 76_[-10]_8 chr8:28445242-28445742 2.4e-05 10_[-10]_74 chr5:14439319-14439819 2.4e-05 68_[+10]_16 chr17:75105442-75105942 2.8e-05 8_[+10]_76 chr7:33669144-33669644 3.2e-05 63_[-10]_21 chr1:177340505-177341005 3.7e-05 26_[-10]_58 chr4:147768088-147768588 3.9e-05 29_[-10]_55 chr8:71711444-71711944 3.9e-05 74_[+10]_10 chr10:99519974-99520474 4.5e-05 76_[+10]_8 chr1:3402103-3402603 4.7e-05 78_[-10]_6 chr7:51606687-51607187 5e-05 5_[-10]_79 chr11:123213185-12321368 5.3e-05 31_[-10]_53 chr8:71355233-71355733 5.6e-05 55_[-10]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYCATAAATYWKWNTG width=16 seqs=50 chr17:48577408-48577908 ( 67) CCCATAAATTTTTATG 1 chr5:82406435-82406935 ( 85) CCCATAAATTTGAATG 1 chr10:121865481-12186598 ( 30) CCCATAAAGCTTAATG 1 chr10:121831742-12183224 ( 3) ACCATAAATTATTCTG 1 chr10:68106666-68107166 ( 39) CCCATAAAGTTGAGTG 1 chr17:66570802-66571302 ( 30) GTCATAAATCTGTTTG 1 chr12:54054305-54054805 ( 34) CCCATAAATTTTATGG 1 chr5:125659260-125659760 ( 19) CCCATAAATTTTAATA 1 chr15:66886245-66886745 ( 43) CTCATAAATGAGTCTG 1 chr12:54033461-54033961 ( 1) GCCATAAATTTTACGA 1 chr6:11270217-11270717 ( 76) GTCATAAAAGTGTCTG 1 chr14:32308052-32308552 ( 6) GCAATAAATTTATGTG 1 chr1:38724121-38724621 ( 50) GCAATAAAGCTGTTTG 1 chr7:25777831-25778331 ( 22) GCCATAAATTAAAGGG 1 chr10:75613678-75614178 ( 49) CTGATAAATTTTACTG 1 chr8:37479291-37479791 ( 2) CTGATAAATTTTACTG 1 chr7:114653398-114653898 ( 24) ACCATAAATTAGAAGG 1 chr12:51405731-51406231 ( 12) GCCATAAAATAGGGTG 1 chr1:64514059-64514559 ( 23) GTGATAAATCACTCTG 1 chr2:207683811-207684311 ( 78) GCAATAAATGACAAGG 1 chr12:89769185-89769685 ( 25) GCCATAAAGTTAGTTG 1 chr12:53739500-53740000 ( 61) GTCATTAATTTCTCTG 1 chr15:67720517-67721017 ( 18) CCCATAAAATACACTA 1 chr8:37302614-37303114 ( 8) GCAATAAATCATTAGA 1 chr2:112869319-112869819 ( 66) CCTATAAATGATAATG 1 chr22:24402554-24403054 ( 66) GCCATAAAATATACTC 1 chr3:190972921-190973421 ( 72) GCCATTAAGTTTAAGG 1 chr2:19667533-19668033 ( 28) ACCATAAAACGTTATG 1 chr8:37703291-37703791 ( 16) CTCATTAATCACTCTG 1 chr5:59021114-59021614 ( 51) CTCATAAATCACCATG 1 chr15:55694764-55695264 ( 77) ACAATAAATGTAAGTG 1 chr3:42819882-42820382 ( 25) CTCATAAATGTAGTTG 1 chr9:95721050-95721550 ( 72) ATCATAAAACATTTGG 1 chr3:194134843-194135343 ( 59) GCAATAAAACATCCTG 1 chr13:99677542-99678042 ( 57) GCTATAAATCTTTTTA 1 chr6:16849338-16849838 ( 63) GCAATTAATGAGAGTG 1 chr10:22552784-22553284 ( 78) CTCATAAAACTCTGGA 1 chrX:136057527-136058027 ( 77) CTAATAAAACTTTTTA 1 chr8:28445242-28445742 ( 11) ACAATAAAAGTTGATG 1 chr5:14439319-14439819 ( 69) GTCATAATTTTTAGTG 1 chr17:75105442-75105942 ( 9) ATGATAAAACAGAATG 1 chr7:33669144-33669644 ( 64) GTGATAAATTTGTTGA 1 chr1:177340505-177341005 ( 27) CTCATAAAGTTTGATC 1 chr4:147768088-147768588 ( 30) GTAATAAAGTAATGTA 1 chr8:71711444-71711944 ( 75) ACTATAAATCTCATGG 1 chr10:99519974-99520474 ( 77) GCGATAAAGCGCTGGG 1 chr1:3402103-3402603 ( 79) ATAATAAATTATTGTC 1 chr7:51606687-51607187 ( 6) CTCATAAAGGGTTTTA 1 chr11:123213185-12321368 ( 32) GCAATAAAAGTATAGA 1 chr8:71355233-71355733 ( 56) ACAATTAAGTAGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.6021 E= 8.8e+001 -53 77 106 -1229 -1229 151 -1229 47 -15 141 -82 -227 179 -1229 -1229 -1229 -1229 -1229 -1229 179 164 -1229 -1229 -153 179 -1229 -1229 -1229 176 -1229 -1229 -385 -27 -1229 -8 96 -1229 60 -8 73 47 -1229 -182 90 -104 -23 18 61 47 -240 -108 67 6 18 6 -27 -1229 -1229 30 136 -39 -182 177 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 50 E= 8.8e+001 0.200000 0.360000 0.440000 0.000000 0.000000 0.600000 0.000000 0.400000 0.260000 0.560000 0.120000 0.060000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.900000 0.000000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 0.240000 0.000000 0.200000 0.560000 0.000000 0.320000 0.200000 0.480000 0.400000 0.000000 0.060000 0.540000 0.140000 0.180000 0.240000 0.440000 0.400000 0.040000 0.100000 0.460000 0.300000 0.240000 0.220000 0.240000 0.000000 0.000000 0.260000 0.740000 0.220000 0.060000 0.720000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAATYWKWNTG MEME-10 regular expression -------------------------------------------------------------------------------- [GCA][CT][CA]ATAAA[TAG][TCG][TA][TG][TA][ACTG][TG][GA] -------------------------------------------------------------------------------- Time 3450.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:98405162-98405662 2.15e-01 100 chr18:59516281-59516781 4.58e-01 28_[-5(6.55e-05)]_65 chr12:54054305-54054805 1.35e-01 33_[+10(3.53e-07)]_51 chr16:29943442-29943942 3.81e-01 37_[-2(6.49e-05)]_51 chr13:54742937-54743437 2.17e-01 35_[-4(5.43e-05)]_21_[-4(3.55e-05)]_\ 20 chr15:55694764-55695264 2.83e-01 76_[+10(1.22e-05)]_8 chr3:78506646-78507146 5.51e-01 6_[-9(6.23e-05)]_85 chr14:69999203-69999703 5.21e-01 100 chr1:56429249-56429749 8.83e-01 100 chr15:88586310-88586810 1.53e-03 33_[-2(2.20e-05)]_55 chr10:76113918-76114418 3.75e-01 50_[+9(8.30e-05)]_41 chr1:177255304-177255804 7.13e-02 32_[+5(6.55e-05)]_61 chr10:68871893-68872393 6.46e-01 100 chr2:209495970-209496470 5.14e-02 6_[-5(6.55e-05)]_53_[-2(2.20e-05)]_\ 22 chr20:40844254-40844754 1.83e-01 39_[-3(3.69e-06)]_52 chr15:96693940-96694440 6.17e-01 100 chr3:177359733-177360233 8.54e-01 100 chrX:149719892-149720392 4.49e-02 75_[+9(6.23e-05)]_16 chr17:49368172-49368672 4.77e-16 17_[-1(1.10e-24)]_38 chr12:23098401-23098901 1.24e-01 100 chr14:36905267-36905767 1.20e-01 49_[-3(1.17e-05)]_42 chr10:12405446-12405946 1.72e-01 90_[-3(6.06e-05)]_1 chr10:22427832-22428332 4.42e-01 100 chr7:132485149-132485649 7.41e-01 100 chr9:126791469-126791969 1.40e-01 100 chr17:66570802-66571302 2.72e-04 29_[+10(2.84e-07)]_31_\ [+2(5.37e-05)]_12 chr10:4653061-4653561 3.70e-02 24_[+9(9.44e-05)]_2_[+8(3.47e-05)]_\ 49 chr10:68106666-68107166 2.94e-02 38_[-10(2.84e-07)]_46 chr20:44018117-44018617 1.11e-01 62_[-5(6.55e-05)]_31 chr8:129946411-129946911 1.07e-01 62_[-4(4.96e-06)]_26 chr8:37517073-37517573 4.38e-03 29_[-7(9.90e-07)]_33_[+2(5.37e-05)]_\ 4 chrX:23807173-23807673 4.87e-02 14_[+5(6.55e-05)]_79 chr2:199278050-199278550 7.19e-01 100 chr5:172342844-172343344 5.00e-02 43_[+7(9.38e-05)]_35 chr7:22545535-22546035 5.97e-01 100 chr10:22599740-22600240 5.47e-01 100 chr12:95103102-95103602 2.63e-01 100 chr15:67720517-67721017 6.43e-02 17_[-10(7.43e-06)]_67 chr10:60951208-60951708 3.05e-01 100 chr16:4944725-4945225 4.39e-02 41_[-5(6.55e-05)]_15_[-5(6.55e-05)]_\ 1_[-9(8.51e-06)]_20 chr13:48727220-48727720 3.04e-04 2_[+5(6.55e-05)]_29_[+4(2.22e-05)]_\ 50 chr6:15735686-15736186 1.15e-01 3_[-3(2.13e-06)]_88 chr14:102639265-10263976 2.76e-16 32_[+1(1.10e-24)]_23 chr2:112869319-112869819 7.59e-03 65_[-10(9.15e-06)]_19 chr17:57811273-57811773 1.07e-01 100 chr7:36303328-36303828 1.06e-01 43_[-3(1.53e-05)]_48 chr1:8706924-8707424 9.26e-01 100 chr1:66778233-66778733 1.07e-01 100 chr3:123344070-123344570 1.73e-01 31_[+5(6.55e-05)]_62 chr2:15259320-15259820 8.92e-01 100 chr5:54389965-54390465 8.56e-03 45_[+9(6.95e-05)]_14_[-7(2.79e-05)]_\ 10 chr2:65662765-65663265 5.33e-01 100 chr17:48239197-48239697 2.69e-02 15_[-3(1.17e-05)]_29_[-4(2.22e-05)]_\ 35 chr17:77543004-77543504 3.03e-04 77_[-3(5.82e-06)]_[+4(3.75e-05)]_2 chr5:159341827-159342327 3.94e-01 100 chr5:140295313-140295813 9.71e-01 100 chr14:54818495-54818995 4.02e-02 28_[-8(2.50e-07)]_56 chr18:48873513-48874013 1.12e-15 25_[+1(8.31e-24)]_30 chr14:61331936-61332436 2.16e-02 77_[+4(7.20e-05)]_11 chr10:8534054-8534554 3.64e-01 100 chr16:54059237-54059737 5.43e-01 100 chr3:24365188-24365688 2.51e-01 10_[-2(7.82e-05)]_78 chr5:78017095-78017595 1.91e-02 29_[+3(3.21e-05)]_25_[-3(2.66e-05)]_\ 28 chr5:119328676-119329176 2.96e-01 10_[+2(1.90e-05)]_78 chr4:169229576-169230076 2.97e-01 100 chr11:27209521-27210021 1.21e-05 17_[-6(2.12e-11)]_53 chr1:64229196-64229696 4.30e-05 37_[-7(1.77e-08)]_41 chr13:74324226-74324726 8.11e-02 100 chr1:160260938-160261438 9.84e-01 100 chr18:32923075-32923575 7.92e-02 10_[-9(4.19e-05)]_81 chr10:23420973-23421473 1.04e-01 100 chr12:92080467-92080967 1.04e-01 12_[-5(6.55e-05)]_81 chr14:69880091-69880591 5.26e-02 21_[+3(6.71e-05)]_70 chr1:67700640-67701140 1.67e-02 65_[-5(6.55e-05)]_28 chr1:161765058-161765558 3.79e-01 100 chr6:45416587-45417087 8.71e-01 100 chr6:161586823-161587323 5.51e-02 51_[-1(8.12e-05)]_4 chr10:44589316-44589816 2.25e-01 100 chr5:125277476-125277976 1.21e-02 43_[+5(6.55e-05)]_50 chr6:2985896-2986396 5.06e-01 100 chr2:160472703-160473203 8.63e-01 100 chr10:112956544-11295704 5.09e-01 100 chr12:26274488-26274988 2.16e-02 45_[-3(3.69e-06)]_46 chr5:133274516-133275016 4.43e-04 61_[-4(2.64e-07)]_27 chr5:125659260-125659760 2.51e-03 18_[-10(7.47e-07)]_66 chr17:78558319-78558819 1.61e-01 16_[+4(7.20e-05)]_72 chr4:81808133-81808633 8.04e-02 69_[-5(6.55e-05)]_24 chr17:2602506-2603006 1.53e-09 25_[+2(7.14e-05)]_26_[-6(1.46e-14)]_\ 7 chr6:21749746-21750246 2.37e-01 86_[-9(1.33e-05)]_5 chr13:29908846-29909346 3.02e-01 100 chr11:95521037-95521537 1.05e-01 100 chr8:99114660-99115160 3.83e-04 33_[-3(1.17e-05)]_18_[+2(6.61e-06)]_\ 28 chr7:121314328-121314828 3.26e-01 46_[+1(1.84e-05)]_9 chr1:61887294-61887794 1.17e-01 55_[-9(4.25e-06)]_36 chr10:75358952-75359452 2.95e-01 42_[+5(6.55e-05)]_51 chr4:71111077-71111577 4.20e-01 100 chr5:126015189-126015689 5.37e-01 100 chr7:25777831-25778331 1.18e-02 9_[+2(5.87e-05)]_[+10(1.92e-06)]_63 chr6:124076283-124076783 4.57e-01 100 chr6:4109343-4109843 1.08e-01 60_[+2(7.65e-06)]_28 chr10:121865481-12186598 3.52e-03 29_[+10(1.40e-07)]_44_\ [-9(8.30e-05)]_2 chr14:32308052-32308552 6.21e-06 5_[-10(1.66e-06)]_51_[+2(5.30e-06)]_\ 16 chr12:29754587-29755087 3.78e-02 29_[+5(6.55e-05)]_1_[-3(6.71e-05)]_\ 54 chr6:159252989-159253489 8.22e-01 100 chr5:59021114-59021614 2.59e-03 3_[-2(4.27e-06)]_35_[+10(1.22e-05)]_\ 34 chr7:27140091-27140591 9.22e-01 100 chr5:82406435-82406935 3.91e-05 4_[+9(6.95e-05)]_16_[-9(4.19e-05)]_\ 46_[+10(4.79e-08)] chr22:24402554-24403054 2.92e-01 65_[-10(1.01e-05)]_19 chr6:2026180-2026680 8.30e-01 100 chr8:120266360-120266860 3.19e-03 8_[+4(4.96e-06)]_10_[+3(3.69e-06)]_\ 61 chr8:37703291-37703791 2.25e-02 15_[-10(1.22e-05)]_22_\ [-7(8.05e-05)]_25 chr6:150753347-150753847 2.54e-02 100 chr1:67831879-67832379 2.32e-01 100 chr6:90677333-90677833 2.55e-03 1_[+8(4.23e-05)]_1_[-2(7.14e-05)]_\ 55_[+3(1.17e-05)]_6 chr11:130103426-13010392 2.43e-01 69_[+3(3.79e-05)]_22 chr7:42091664-42092164 1.76e-02 75_[-2(4.43e-05)]_13 chr12:48021694-48022194 7.17e-03 [-2(4.27e-06)]_88 chr5:112388751-112389251 3.10e-02 90_[+9(6.38e-06)]_1 chr5:67015577-67016077 1.16e-01 26_[-5(6.55e-05)]_67 chr9:110370308-110370808 2.46e-01 71_[+7(8.30e-05)]_7 chr15:58361171-58361671 3.11e-03 67_[-7(2.16e-07)]_11 chr7:140396297-140396797 9.72e-01 100 chr5:123814170-123814670 1.83e-02 13_[+5(6.55e-05)]_80 chr2:37376679-37377179 2.20e-02 42_[-8(4.77e-05)]_42 chr10:35195663-35196163 1.12e-02 50_[+4(4.20e-06)]_38 chr17:66502797-66503297 1.20e-02 66_[+2(1.69e-05)]_22 chr15:36356843-36357343 6.85e-01 100 chr12:53739500-53740000 4.85e-02 3_[-4(9.81e-05)]_45_[-10(7.43e-06)]_\ 24 chr16:14013443-14013943 1.51e-01 100 chr6:138036859-138037359 2.58e-01 87_[-2(3.23e-05)]_1 chr11:126153926-12615442 4.32e-01 100 chr7:137952994-137953494 4.45e-01 100 chr7:80760236-80760736 6.75e-01 100 chr17:60371700-60372200 4.97e-02 12_[-2(5.30e-06)]_64_[-2(3.23e-05)] chr15:70091809-70092309 9.19e-02 49_[-3(4.90e-05)]_42 chr1:116476295-116476795 3.36e-04 43_[+3(1.17e-05)]_8_[-8(5.56e-08)]_\ 24 chr10:11685707-11686207 3.66e-01 49_[-2(5.37e-05)]_39 chr3:169657253-169657753 6.04e-04 16_[+8(7.13e-08)]_68 chr15:60074151-60074651 5.28e-01 100 chr5:10606901-10607401 3.31e-06 58_[+8(1.40e-10)]_26 chr8:70181883-70182383 1.57e-02 36_[+2(5.30e-06)]_42_[+3(4.32e-05)]_\ 1 chr1:113991288-113991788 5.64e-01 29_[-4(2.22e-05)]_59 chr9:13956061-13956561 7.78e-01 100 chr5:124661279-124661779 5.38e-02 100 chr2:205280600-205281100 4.64e-02 70_[+2(5.30e-06)]_18 chr14:34700086-34700586 4.09e-01 100 chr1:8712779-8713279 5.50e-01 100 chr8:27939838-27940338 1.37e-01 71_[+9(2.69e-06)]_20 chr14:71372453-71372953 8.64e-01 100 chr2:54572201-54572701 6.76e-02 22_[-8(9.85e-05)]_62 chr10:117148170-11714867 7.56e-02 43_[-3(6.06e-05)]_48 chr12:116718841-11671934 5.23e-01 49_[-2(7.14e-05)]_39 chr17:32015500-32016000 1.47e-02 100 chr5:59649128-59649628 1.82e-01 63_[-2(7.14e-05)]_25 chr7:27098737-27099237 1.51e-01 100 chr11:86577631-86578131 2.55e-01 100 chr6:15949416-15949916 3.46e-01 100 chr6:112231666-112232166 4.92e-03 61_[-10(3.68e-05)]_23 chr10:8271879-8272379 3.24e-02 46_[+3(2.13e-06)]_45 chr21:33971505-33972005 5.41e-02 1_[+2(7.82e-05)]_87 chr10:62018981-62019481 2.71e-01 100 chr17:8093651-8094151 8.47e-17 20_[-1(1.10e-24)]_1_[-2(3.60e-05)]_\ 22 chr15:74546041-74546541 3.61e-01 52_[-5(6.55e-05)]_41 chr6:132122774-132123274 2.12e-02 40_[+3(2.66e-05)]_51 chr3:72899178-72899678 6.75e-03 64_[+4(9.87e-06)]_24 chr7:158615985-158616485 1.90e-01 48_[+2(4.88e-05)]_40 chr5:83265170-83265670 2.97e-01 [-2(8.70e-06)]_42_[+2(5.87e-05)]_34 chr2:109213982-109214482 5.50e-03 23_[-4(5.54e-07)]_65 chr2:175806987-175807487 4.31e-02 72_[-9(6.38e-06)]_19 chr11:128061406-12806190 8.53e-01 100 chr1:64514059-64514559 5.52e-02 22_[-10(4.75e-06)]_62 chr10:92993770-92994270 6.01e-02 44_[-4(2.66e-06)]_44 chr5:154334291-154334791 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67_[-9(9.81e-05)]_24 chr1:231037946-231038446 1.96e-01 66_[+2(1.26e-05)]_22 chr5:124742196-124742696 6.40e-01 100 chr6:124822064-124822564 1.22e-01 57_[-4(2.07e-05)]_31 chr19:2983984-2984484 5.78e-03 11_[+3(2.66e-05)]_57_[-9(1.56e-06)]_\ 14 chr3:44995225-44995725 6.70e-03 7_[-2(3.23e-05)]_81 chr15:36925631-36926131 1.49e-03 48_[+7(1.31e-07)]_30 chr4:23818163-23818663 3.77e-03 50_[+3(2.13e-06)]_41 chr7:21941523-21942023 4.35e-01 100 chr17:27915608-27916108 2.55e-04 [-2(1.69e-05)]_48_[+3(3.69e-06)]_5_\ [+9(1.49e-05)]_17 chr5:174503806-174504306 8.51e-01 100 chrX:136046983-136047483 1.67e-01 57_[-2(1.46e-05)]_31 chr10:121831742-12183224 5.04e-04 2_[+10(2.84e-07)]_19_[-2(1.69e-05)]_\ 51 chr17:32298891-32299391 2.22e-05 25_[+7(8.32e-08)]_53 chr1:24043447-24043947 7.96e-03 54_[+2(6.61e-06)]_34 chr10:72098722-72099222 4.01e-04 12_[+7(1.76e-05)]_22_[+4(2.64e-07)]_\ 32 chr15:55825189-55825689 9.67e-04 47_[+7(2.70e-09)]_31 chr4:156815648-156816148 5.63e-02 76_[-9(2.69e-06)]_15 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chr1:241460439-241460939 4.84e-02 1_[+9(1.86e-05)]_90 chr3:169526186-169526686 7.03e-03 50_[-4(3.35e-05)]_16_[+2(2.88e-05)]_\ 10 chr1:6404513-6405013 4.73e-16 [-1(1.10e-24)]_55 chr7:98476695-98477195 1.49e-01 100 chr6:150418319-150418819 2.75e-01 100 chr12:806375-806875 6.85e-03 25_[+2(3.39e-06)]_63 chr10:36423717-36424217 3.72e-02 [-6(5.71e-05)]_21_[+3(6.71e-05)]_40 chr1:68217000-68217500 2.76e-01 6_[-2(7.82e-05)]_82 chr8:37392998-37393498 7.56e-01 100 chr5:136729911-136730411 3.60e-01 83_[-9(3.67e-05)]_8 chr2:191321783-191322283 6.49e-01 100 chr10:121310106-12131060 4.90e-01 40_[-4(2.72e-05)]_48 chr5:125275307-125275807 2.52e-02 47_[+2(5.87e-05)]_41 chr10:23408405-23408905 3.92e-01 100 chr5:136123154-136123654 9.75e-02 100 chr5:88516295-88516795 1.04e-01 69_[-2(1.69e-05)]_19 chr20:53899425-53899925 4.47e-01 100 chr1:198763245-198763745 5.03e-01 100 chr6:56529579-56530079 1.67e-02 16_[-1(3.37e-07)]_39 chr6:139152327-139152827 4.19e-01 100 chr1:244347915-244348415 3.57e-01 100 chr6:21264311-21264811 2.21e-01 36_[+3(4.32e-05)]_55 chr9:95721050-95721550 2.39e-04 10_[-1(4.97e-06)]_16_\ [+10(1.34e-05)]_13 chr4:185914645-185915145 3.56e-02 72_[+3(1.96e-05)]_19 chr10:11773687-11774187 4.39e-01 100 chr6:125050688-125051188 4.52e-03 100 chr9:123678562-123679062 7.17e-01 100 chr8:108689368-108689868 4.30e-01 57_[-9(2.47e-05)]_34 chr1:159916142-159916642 7.02e-01 100 chr19:35881941-35882441 2.66e-14 25_[-1(2.91e-23)]_30 chr1:214520477-214520977 6.89e-01 100 chr7:116810322-116810822 5.21e-01 100 chr10:112793304-11279380 3.11e-02 62_[+2(2.20e-05)]_26 chr4:53943648-53944148 3.67e-03 16_[-4(6.63e-06)]_13_[+3(1.17e-05)]_\ 34_[+4(6.07e-05)]_4 chr8:29126517-29127017 1.05e-02 33_[+3(3.69e-06)]_14_[+9(7.76e-05)]_\ 35 chr17:75105442-75105942 5.64e-03 8_[+10(2.79e-05)]_76 chr6:52243258-52243758 5.57e-02 62_[+9(8.51e-06)]_29 chr1:89719630-89720130 3.40e-01 45_[-3(6.06e-05)]_46 chr7:70092355-70092855 4.72e-01 100 chr18:59455113-59455613 7.86e-01 100 chr5:160008637-160009137 5.81e-20 12_[-1(5.50e-25)]_22_[-9(2.69e-05)]_\ 12 chr10:77305597-77306097 8.75e-02 100 chr10:87845974-87846474 6.00e-01 23_[-4(9.20e-05)]_65 chr20:35319244-35319744 3.60e-03 46_[-1(7.47e-05)]_9 chr7:114653398-114653898 1.69e-02 23_[-10(2.55e-06)]_61 chr14:76486250-76486750 3.38e-01 100 chr21:38990096-38990596 4.46e-03 27_[+7(6.48e-05)]_35_[-3(1.17e-05)]_\ 7 chr8:99323787-99324287 6.33e-01 100 chr9:127388333-127388833 1.89e-01 100 chr15:70494072-70494572 3.76e-04 51_[-7(3.91e-10)]_27 chr22:27212593-27213093 4.58e-01 100 chr6:38974761-38975261 6.19e-01 100 chr17:71438632-71439132 1.41e-01 100 chr4:147768088-147768588 2.63e-01 29_[-10(3.93e-05)]_55 chr10:7433224-7433724 1.48e-02 30_[-2(3.23e-05)]_5_[+3(1.96e-05)]_\ 44 chr12:41288155-41288655 1.25e-01 21_[-6(4.41e-05)]_49 chr2:55843194-55843694 2.62e-03 56_[-4(2.64e-07)]_32 chr5:92552245-92552745 5.73e-02 87_[+2(5.37e-05)]_1 chr15:66886245-66886745 2.18e-02 42_[-10(8.80e-07)]_42 chr18:50629032-50629532 2.69e-02 47_[+9(6.38e-06)]_44 chr1:167658652-167659152 1.31e-01 47_[+9(2.47e-05)]_44 chr7:83267138-83267638 1.59e-01 6_[+1(4.41e-05)]_49 chr10:132700570-13270107 2.98e-01 100 chr1:61091491-61091991 7.70e-01 100 chr13:46674981-46675481 2.70e-03 54_[-2(3.13e-07)]_34 chr4:111883490-111883990 2.69e-04 21_[+3(1.32e-05)]_44_[+2(3.39e-06)]_\ 14 chr13:37046921-37047421 2.90e-04 68_[-4(1.09e-05)]_6_[+9(2.47e-05)]_\ 5 chr1:11178267-11178767 2.33e-01 25_[-3(1.96e-05)]_66 chr11:88320062-88320562 1.44e-01 100 chr10:12720331-12720831 8.99e-02 57_[-2(2.20e-05)]_31 chr7:27165479-27165979 5.30e-01 55_[+2(6.49e-05)]_33 chr11:115476468-11547696 4.04e-01 100 chr6:115485321-115485821 2.19e-01 25_[+5(6.55e-05)]_68 chr13:21949769-21950269 3.71e-01 100 chr10:126249961-12625046 4.19e-05 23_[-1(4.30e-06)]_32 chr5:125485025-125485525 2.30e-01 84_[+5(6.55e-05)]_9 chr1:59077972-59078472 9.91e-01 100 chr1:3403704-3404204 4.62e-02 86_[+2(2.88e-05)]_2 chr8:37359521-37360021 1.30e-02 10_[-3(2.81e-05)]_81 chrX:136057527-136058027 9.73e-02 76_[-10(2.22e-05)]_8 chr10:22552784-22553284 1.79e-02 77_[+10(2.22e-05)]_7 chr6:1667161-1667661 6.62e-02 100 chr3:138833420-138833920 6.82e-01 100 chr8:37637880-37638380 3.66e-02 2_[-4(9.15e-07)]_86 chr5:124655900-124656400 7.11e-01 100 chr5:94469761-94470261 3.91e-04 21_[+9(1.18e-05)]_17_[+6(3.57e-06)]_\ 23 chr3:190972921-190973421 1.19e-03 6_[+8(8.77e-05)]_6_[-5(6.55e-05)]_\ 36_[+10(1.11e-05)]_13 chr1:201721118-201721618 2.05e-01 71_[-2(4.06e-05)]_17 chr1:59214665-59215165 6.04e-03 10_[+8(2.34e-05)]_74 chr12:54033461-54033961 1.29e-04 [+10(1.66e-06)]_18_[-4(3.55e-06)]_\ 54 chr8:37547855-37548355 2.12e-01 35_[+4(4.46e-05)]_53 chr5:124734986-124735486 6.50e-02 50_[+9(1.49e-05)]_41 chr1:228781066-228781566 6.27e-04 33_[-4(9.87e-06)]_2_[+9(4.25e-06)]_\ 8_[+9(7.76e-05)]_27 chr6:137665268-137665768 4.90e-01 100 chrX:38061242-38061742 3.19e-01 71_[-5(6.55e-05)]_5_[+5(6.55e-05)]_\ 10 chr8:37479291-37479791 1.03e-01 1_[+10(2.21e-06)]_83 chr7:33669144-33669644 3.84e-01 63_[-10(3.22e-05)]_21 chr15:69143642-69144142 6.38e-07 39_[+2(5.30e-06)]_10_[-7(5.85e-10)]_\ 17 chr7:80876791-80877291 8.18e-01 100 chr12:54052075-54052575 3.35e-02 79_[-2(5.87e-05)]_9 chr2:31008532-31009032 1.13e-05 38_[+4(4.96e-06)]_19_[+6(5.41e-10)]_\ 1 chr10:44752840-44753340 8.22e-01 100 chr10:75613678-75614178 1.64e-04 48_[-10(2.21e-06)]_12_\ [-7(9.72e-08)]_2 chr5:17305870-17306370 1.58e-02 100 chr5:74632108-74632608 2.36e-01 45_[+2(5.87e-05)]_43 chr10:50463970-50464470 3.42e-01 17_[-2(8.70e-06)]_71 chr1:229221437-229221937 9.94e-02 8_[-2(1.12e-06)]_80 chr15:59953466-59953966 1.18e-01 100 chr7:116218110-116218610 4.93e-03 77_[+7(2.13e-08)]_1 chr4:80307274-80307774 1.55e-01 57_[+3(1.17e-05)]_34 chr6:2028605-2029105 8.96e-01 100 chr3:16482918-16483418 2.01e-04 17_[-3(4.90e-05)]_45_[-2(9.87e-07)]_\ 17 chr1:81126876-81127376 4.06e-01 100 chr3:42819882-42820382 1.16e-02 24_[+10(1.34e-05)]_60 chr8:28445242-28445742 4.75e-01 10_[-10(2.40e-05)]_74 chr1:8439096-8439596 6.88e-01 100 chr4:110904623-110905123 1.47e-01 53_[-3(3.69e-06)]_38 chr12:114914221-11491472 2.84e-02 32_[-5(6.55e-05)]_61 chr9:18976681-18977181 1.12e-07 53_[+6(8.36e-13)]_17 chr6:143755252-143755752 4.69e-03 30_[+4(2.64e-07)]_58 chr19:33293248-33293748 9.21e-02 27_[+6(5.13e-05)]_43 chr7:135716570-135717070 1.96e-07 39_[+7(2.37e-05)]_7_[+6(1.10e-11)]_\ 2 chr1:215581871-215582371 5.65e-02 54_[+1(7.86e-06)]_1 chr15:67792459-67792959 6.95e-01 100 chr16:25049563-25050063 5.10e-02 100 chr5:175378372-175378872 2.28e-01 100 chr14:32134446-32134946 8.93e-03 70_[-4(7.56e-06)]_18 chr8:109611165-109611665 8.65e-02 73_[-2(8.70e-06)]_15 chr8:71355233-71355733 3.23e-02 41_[+2(1.15e-05)]_2_[-10(5.64e-05)]_\ 29 chr6:168147142-168147642 4.06e-05 41_[+7(2.19e-10)]_37 chr3:194350325-194350825 2.10e-09 39_[+6(1.45e-15)]_31 chr9:85743168-85743668 5.45e-01 100 chr10:75379151-75379651 8.88e-02 34_[-4(5.84e-06)]_54 chr1:81032869-81033369 1.29e-01 100 chr3:17730413-17730913 2.89e-03 12_[-7(6.65e-06)]_66 chr14:99821632-99822132 9.16e-02 81_[+2(4.43e-05)]_7 chr20:53609851-53610351 1.90e-01 100 chr16:1271751-1272251 2.73e-01 47_[-3(9.29e-05)]_28_[-3(9.29e-05)]_\ 7 chr1:80403329-80403829 1.42e-01 80_[-4(3.12e-06)]_8 chr1:86774466-86774966 2.15e-01 100 chr19:40920945-40921445 2.13e-03 40_[-2(6.49e-05)]_48 chr14:36835059-36835559 8.90e-01 100 chr10:72204287-72204787 4.94e-01 100 chr10:77287666-77288166 2.94e-01 100 chr17:34981743-34982243 6.00e-01 100 chr8:37360450-37360950 9.21e-01 100 chr3:181328985-181329485 3.02e-01 100 chr1:85274861-85275361 1.60e-08 [+7(2.13e-08)]_4_[+6(2.70e-10)]_44 chr5:124740931-124741431 9.04e-01 100 chr8:37302614-37303114 1.38e-01 7_[+10(9.15e-06)]_77 chr6:82260170-82260670 8.40e-02 74_[-9(2.69e-05)]_17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************