# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:25 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GLI2.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018)
#        host: kadru
#        when: Mon Jun 11 07:57:10 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.300 C 0.202 G 0.201 T 0.298


MOTIF ATAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATAAA      TTTAT        385        172   1.2e-035   3.6e-031
#            ATAAA      TTTAT        385        172   1.2e-035   3.6e-031

letter-probability matrix: alength= 4 w= 5 nsites= 602 E= 3.6e-031
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTAAW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GTAAW      WTTAC        325        198   8.9e-014   2.6e-009
#            GTAAA      TTTAC        209        123   1.8e-008   5.4e-004
#            GTAAT      ATTAC        172         95   5.7e-008   1.7e-003

letter-probability matrix: alength= 4 w= 5 nsites= 440 E= 2.6e-009
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.554545 0.000000 0.000000 0.445455


MOTIF CMGCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CMGCAG     CTGCKG         98         27   5.7e-012   1.6e-007
#           CAGCAG     CTGCTG         84         23   2.2e-010   6.3e-006
#           CCGCAG     CTGCGG         17          5   8.0e-003   2.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 109 E= 1.6e-007
0.000000 1.000000 0.000000 0.000000
0.844037 0.155963 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGASTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ATGASTC    GASTCAT         42          5   6.9e-009   1.9e-004
#          ATGACTC    GAGTCAT         28          4   7.6e-006   2.1e-001
#          ATGAGTC    GACTCAT         21          3   1.2e-004   3.4e+000

letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 1.9e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.581395 0.418605 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCYC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       CTCYC      GRGAG        203        124   1.9e-007   5.4e-003
#            CTCCC      GGGAG        117         64   1.2e-005   3.4e-001
#            CTCTC      GAGAG        114         77   2.2e-003   6.2e+001

letter-probability matrix: alength= 4 w= 5 nsites= 243 E= 5.4e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.497942 0.000000 0.502058
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 26.09 seconds