# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT MEME-1 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTWT 6.6e-005 8.8e-008 -16.25 0.0 32 456 9 10 0.07018 3.9e-010 227 1 WDTGTTTRTTTT MEME-2 WDTGTTTRTTTT 4.7e-013 6.3e-016 -35.00 0.0 197 489 300 504 0.40286 2.6e-018 244 1 CCTGCTGWG MEME-3 CCTGCTGWG 1.6e-002 2.1e-005 -10.75 0.0 66 492 57 210 0.13415 8.7e-008 245 1 TGACAGWTTTAT MEME-4 TGACAGWTTTAT 1.3e-003 1.7e-006 -13.27 0.0 205 489 155 259 0.41922 7.1e-009 244 1 TGACTCA MEME-5 TGACTCA 2.6e-005 3.4e-008 -17.19 0.0 314 494 119 135 0.63563 1.4e-010 246 1 TTGTTKKGADGATTAARTRAKA MEME-7 TTGTTKKGADGATTAARTRAKA 8.0e-001 1.1e-003 -6.84 0.0 141 479 41 75 0.29436 4.5e-006 239 1 SYCATAAATYWKWNTG MEME-10 SYCATAAATYWKWNTG 1.6e-006 2.2e-009 -19.94 0.0 267 485 196 260 0.55052 9.0e-012 242 2 ATAAA DREME-1 ATAAA 7.3e-011 9.7e-014 -29.96 0.0 164 496 283 572 0.33065 3.9e-016 247 2 GTAAW DREME-2 GTAAW 2.2e-003 2.9e-006 -12.75 0.0 196 496 289 563 0.39516 1.2e-008 247 2 ATGASTC DREME-4 ATGASTC 2.0e-003 2.7e-006 -12.82 0.0 286 494 107 131 0.57895 1.1e-008 246 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 1.2e0000 1.5e-003 -6.48 0.0 122 490 188 567 0.24898 6.3e-006 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 8.5e-003 1.1e-005 -11.38 0.0 142 492 227 576 0.28862 4.6e-008 245 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 9.1e-003 1.2e-005 -11.32 0.0 285 491 393 569 0.58045 5.0e-008 245 3 M0415_1.02 (KLF9)_(Mus_musculus)_(DBD_1.00) NTAACGGN 5.8e0000 7.7e-003 -4.86 0.0 453 493 483 501 0.91886 3.2e-005 246 3 M0633_1.02 DMRT2 KAATKTATWN 1.1e-001 1.5e-004 -8.81 0.0 199 491 288 568 0.40530 6.1e-007 245 3 M0718_1.02 FOXK1 DNRTMAACAH 4.2e-015 5.7e-018 -39.71 0.0 147 491 285 594 0.29939 2.3e-020 245 3 M0719_1.02 FOXG1 RTAAACAW 2.3e-014 3.1e-017 -38.03 0.0 149 493 279 580 0.30223 1.2e-019 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 1.6e-014 2.2e-017 -38.37 0.0 131 489 261 591 0.26789 8.9e-020 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 1.5e-009 2.0e-012 -26.93 0.0 155 493 276 592 0.31440 8.2e-015 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 6.0e-010 8.0e-013 -27.86 0.0 199 491 338 600 0.40530 3.3e-015 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 4.4e-018 5.9e-021 -46.57 0.0 135 491 278 598 0.27495 2.4e-023 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 2.1e-003 2.8e-006 -12.80 0.0 232 492 321 541 0.47154 1.1e-008 245 3 M0890_1.02 LHX6 NYAATCAN 7.4e-002 9.9e-005 -9.22 0.0 193 493 292 592 0.39148 4.0e-007 246 3 M0892_1.02 EMX1 NYTAATKAVN 8.8e-006 1.2e-008 -18.26 0.0 207 491 328 590 0.42159 4.8e-011 245 3 M0893_1.02 ZFHX2 NNTAATTANN 1.5e-001 2.0e-004 -8.52 0.0 205 491 286 550 0.41752 8.2e-007 245 3 M0894_1.02 LBX1 TTAATTAG 2.2e-003 2.9e-006 -12.75 0.0 261 493 374 579 0.52941 1.2e-008 246 3 M0896_1.02 VENTX TTAATTAG 4.4e-009 5.9e-012 -25.86 0.0 163 493 280 581 0.33063 2.4e-014 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 2.7e-021 3.6e-024 -53.98 0.0 241 491 417 589 0.49084 1.5e-026 245 3 M0900_1.02 SHOX HTAATTRV 4.7e-003 6.3e-006 -11.97 0.0 253 493 369 590 0.51318 2.6e-008 246 3 M0901_1.02 AC226150.2 CWTGTCAA 1.6e0000 2.2e-003 -6.14 0.0 93 493 155 591 0.18864 8.8e-006 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 5.0e-008 6.6e-011 -23.44 0.0 268 492 391 563 0.54472 2.7e-013 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 7.1e-002 9.5e-005 -9.26 0.0 225 491 294 517 0.45825 3.9e-007 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 1.5e-004 2.0e-007 -15.45 0.0 224 492 335 575 0.45528 8.0e-010 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 3.7e-003 4.9e-006 -12.22 0.0 253 493 348 552 0.51318 2.0e-008 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 9.7e-009 1.3e-011 -25.06 0.0 166 494 236 467 0.33603 5.3e-014 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 1.1e-006 1.4e-009 -20.38 0.0 222 494 347 588 0.44939 5.8e-012 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 3.9e-003 5.2e-006 -12.17 0.0 138 492 225 582 0.28049 2.1e-008 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 4.4e-001 5.9e-004 -7.44 0.0 164 492 252 594 0.33333 2.4e-006 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 4.4e-006 5.8e-009 -18.96 0.0 170 492 280 585 0.34553 2.4e-011 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 9.1e-010 1.2e-012 -27.43 0.0 174 492 302 592 0.35366 5.0e-015 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 9.8e-010 1.3e-012 -27.36 0.0 290 492 182 218 0.58943 5.3e-015 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 2.1e-006 2.8e-009 -19.68 0.0 226 492 343 572 0.45935 1.2e-011 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATTA 1.3e0000 1.7e-003 -6.39 0.0 181 493 215 460 0.36714 6.8e-006 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 7.1e-015 9.4e-018 -39.20 0.0 182 492 328 589 0.36992 3.8e-020 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 8.0e-002 1.1e-004 -9.14 0.0 216 492 323 597 0.43902 4.4e-007 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 6.1e-005 8.2e-008 -16.32 0.0 248 492 357 562 0.50407 3.3e-010 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.3e-006 1.8e-009 -20.16 0.0 266 492 383 562 0.54065 7.2e-012 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 5.8e-008 7.8e-011 -23.27 0.0 225 493 350 577 0.45639 3.2e-013 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 4.3e-009 5.8e-012 -25.88 0.0 268 492 414 594 0.54472 2.4e-014 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 4.2e-001 5.6e-004 -7.49 0.0 139 491 218 587 0.28310 2.3e-006 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 6.5e-026 8.7e-029 -64.62 0.0 199 491 380 591 0.40530 3.5e-031 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 8.8e-010 1.2e-012 -27.47 0.0 226 492 362 583 0.45935 4.8e-015 245 3 M1581_1.02 (CIC)_(Mus_musculus)_(DBD_1.00) NNTGCTGACW 2.0e0000 2.7e-003 -5.92 0.0 255 491 357 587 0.51935 1.1e-005 245 3 M1863_1.02 FOXD1 GTAAACAW 3.7e-007 5.0e-010 -21.42 0.0 183 493 291 565 0.37120 2.0e-012 246 3 M1868_1.02 GATA2 DSAGATAAGAAHHW 6.2e-002 8.3e-005 -9.39 0.0 257 487 356 563 0.52772 3.4e-007 243 3 M2267_1.02 CDX2 TTTTATKRCHB 1.7e-017 2.3e-020 -45.22 0.0 210 490 368 583 0.42857 9.4e-023 244 3 M2270_1.02 DUX4 TAAYYYAATCA 7.0e-003 9.3e-006 -11.58 0.0 92 490 147 511 0.18776 3.8e-008 244 3 M2278_1.02 FOS DVTGASTCATB 2.7e-006 3.6e-009 -19.45 0.0 176 490 263 523 0.35918 1.5e-011 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 2.5e-005 3.3e-008 -17.23 0.0 154 486 259 584 0.31687 1.4e-010 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 1.2e-012 1.6e-015 -34.06 0.0 172 488 304 575 0.35246 6.6e-018 243 3 M2289_1.02 JUN DDRATGATGTMAT 1.3e-004 1.8e-007 -15.53 0.0 286 488 375 525 0.58607 7.4e-010 243 3 M2292_1.02 JUND DRTGASTCATS 5.3e-006 7.1e-009 -18.77 0.0 178 490 255 502 0.36327 2.9e-011 244 3 M2296_1.02 MAFK MWDASTCAGCAWWWW 1.7e-001 2.3e-004 -8.36 0.0 202 486 292 566 0.41564 9.6e-007 242 3 M2385_1.02 FOXP2 RWGTAAACAVR 1.4e-009 1.9e-012 -27.01 0.0 128 490 236 578 0.26122 7.7e-015 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 7.2e-004 9.7e-007 -13.85 0.0 308 486 427 571 0.63374 4.0e-009 242 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 1.9e0000 2.5e-003 -5.99 0.0 176 486 237 523 0.36214 1.0e-005 242 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 4.7e-001 6.3e-004 -7.37 0.0 171 487 216 475 0.35113 2.6e-006 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 1.3e-009 1.7e-012 -27.08 0.0 142 486 262 591 0.29218 7.2e-015 242 3 M4600_1.02 GATA1 NSAGATAAGVV 8.1e-002 1.1e-004 -9.13 0.0 258 490 364 579 0.52653 4.5e-007 244 3 M4619_1.02 FOSL1 BGGTGASTCAT 9.5e-005 1.3e-007 -15.87 0.0 176 490 238 480 0.35918 5.2e-010 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 1.2e0000 1.7e-003 -6.40 0.0 174 486 224 493 0.35802 6.8e-006 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 1.1e-003 1.5e-006 -13.39 0.0 242 484 286 450 0.50000 6.3e-009 241 3 M4681_1.02 BACH2 TGCTGAGTCA 1.1e-001 1.5e-004 -8.82 0.0 321 491 357 471 0.65377 6.0e-007 245 3 M5284_1.02 ALX3 BNTAATTRGY 5.7e-001 7.6e-004 -7.18 0.0 227 491 324 581 0.46232 3.1e-006 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 2.0e-005 2.7e-008 -17.42 0.0 178 488 275 551 0.36475 1.1e-010 243 3 M5291_1.02 ARX YTAATTNRATTAN 1.4e-001 1.8e-004 -8.60 0.0 30 488 61 515 0.06148 7.6e-007 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 8.4e-007 1.1e-009 -20.61 0.0 283 487 227 294 0.58111 4.6e-012 243 3 M5294_1.02 BARHL2 NHTAAAYGNT 6.5e-004 8.6e-007 -13.96 0.0 153 491 249 584 0.31161 3.5e-009 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 7.7e-002 1.0e-004 -9.18 0.0 318 484 372 489 0.65702 4.3e-007 241 3 M5302_1.02 BATF3 TGATGACGTCATCA 6.0e-001 8.0e-004 -7.14 0.0 283 487 108 141 0.58111 3.3e-006 243 3 M5310_1.02 BSX NTAATBRS 3.7e-006 5.0e-009 -19.11 0.0 163 493 267 575 0.33063 2.0e-011 246 3 M5322_1.02 CPEB1 TTTTTATT 1.5e0000 2.0e-003 -6.24 0.0 73 493 127 589 0.14807 7.9e-006 246 3 M5323_1.02 CREB3 KGRTGACGTCAYNN 1.3e-001 1.7e-004 -8.69 0.0 299 487 220 293 0.61396 6.9e-007 243 3 M5339_1.02 DLX1 NNTAATTRNN 1.7e0000 2.3e-003 -6.09 0.0 115 491 183 584 0.23422 9.3e-006 245 3 M5342_1.02 DLX4 NTAATTRN 7.9e-006 1.1e-008 -18.37 0.0 255 493 386 593 0.51724 4.3e-011 246 3 M5343_1.02 DLX5 NTAATTRN 5.5e-002 7.4e-005 -9.51 0.0 163 493 255 592 0.33063 3.0e-007 246 3 M5344_1.02 DLX6 NTAATTRN 6.7e-005 8.9e-008 -16.23 0.0 255 493 381 592 0.51724 3.6e-010 246 3 M5345_1.02 DMBX1 NHTAATCCBH 6.0e0000 8.0e-003 -4.83 0.0 89 491 145 584 0.18126 3.3e-005 245 3 M5346_1.02 DPRX SHTAATCCNN 7.4e-001 9.9e-004 -6.91 0.0 185 491 273 583 0.37678 4.1e-006 245 3 M5348_1.02 DRGX NTAATYHAATTAN 5.4e-003 7.2e-006 -11.83 0.0 126 488 186 506 0.25820 3.0e-008 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 3.8e-003 5.1e-006 -12.19 0.0 332 488 437 556 0.68033 2.1e-008 243 3 M5388_1.02 EMX2 NYTAATTAVB 9.5e-003 1.3e-005 -11.27 0.0 253 491 351 559 0.51527 5.2e-008 245 3 M5390_1.02 EN1 VBTAATTRSB 2.3e-002 3.0e-005 -10.41 0.0 261 491 375 588 0.53157 1.2e-007 245 3 M5394_1.02 EN2 NNTAATTRVD 1.9e-002 2.5e-005 -10.59 0.0 253 491 362 580 0.51527 1.0e-007 245 3 M5414_1.02 ESX1 DNTAATTRRN 5.3e-003 7.1e-006 -11.86 0.0 261 491 381 592 0.53157 2.9e-008 245 3 M5427_1.02 EVX1 SNTAATTABB 2.3e-004 3.1e-007 -14.99 0.0 173 491 276 583 0.35234 1.3e-009 245 3 M5428_1.02 EVX2 NNTAATKABB 7.0e-004 9.3e-007 -13.89 0.0 163 491 262 585 0.33198 3.8e-009 245 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 1.6e-002 2.2e-005 -10.74 0.0 189 487 277 556 0.38809 8.9e-008 243 3 M5446_1.02 FOXD4L2 RTAAACA 2.6e-019 3.4e-022 -49.43 0.0 188 494 350 595 0.38057 1.4e-024 246 3 M5460_1.02 FOXL1 RTAAACA 3.0e-014 4.0e-017 -37.76 0.0 150 494 286 595 0.30364 1.6e-019 246 3 M5471_1.02 FOXO6 GTAAACATGTTTAC 5.3e-001 7.0e-004 -7.26 0.0 91 487 75 242 0.18686 2.9e-006 243 3 M5480_1.02 GBX1 RBTAATTRGB 2.3e-003 3.1e-006 -12.69 0.0 261 491 361 556 0.53157 1.3e-008 245 3 M5481_1.02 GBX2 NYTAATTRSB 2.4e-003 3.3e-006 -12.63 0.0 253 491 363 575 0.51527 1.3e-008 245 3 M5500_1.02 GSC VYTAATCCBH 3.2e0000 4.3e-003 -5.46 0.0 87 491 140 566 0.17719 1.7e-005 245 3 M5501_1.02 GSC2 NYTAATCCBH 1.1e0000 1.5e-003 -6.50 0.0 185 491 272 582 0.37678 6.2e-006 245 3 M5502_1.02 GSX1 NBTAATKRSN 8.2e-006 1.1e-008 -18.33 0.0 267 491 397 588 0.54379 4.5e-011 245 3 M5503_1.02 GSX2 DYTAATKRVN 8.5e-006 1.1e-008 -18.29 0.0 251 491 379 588 0.51120 4.6e-011 245 3 M5518_1.02 HMX1 NDTTAATTGNT 8.1e-006 1.1e-008 -18.34 0.0 280 490 414 589 0.57143 4.5e-011 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 5.0e-007 6.7e-010 -21.12 0.0 220 490 352 595 0.44898 2.8e-012 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 2.0e-003 2.7e-006 -12.82 0.0 208 490 321 595 0.42449 1.1e-008 244 3 M5541_1.02 HOXB2 NNTAATKANN 2.7e-007 3.7e-010 -21.73 0.0 249 491 386 593 0.50713 1.5e-012 245 3 M5542_1.02 HOXB3 NYTAATKRNN 1.5e-006 2.0e-009 -20.01 0.0 253 491 389 596 0.51527 8.4e-012 245 3 M5543_1.02 HOXB5 NHTAATKRNN 3.5e-007 4.7e-010 -21.48 0.0 267 491 409 598 0.54379 1.9e-012 245 3 M5544_1.02 HOXC10 DTTTWATKDB 2.5e-018 3.3e-021 -47.16 0.0 207 491 371 594 0.42159 1.3e-023 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 2.0e-015 2.7e-018 -40.44 0.0 244 490 397 576 0.49796 1.1e-020 244 3 M5551_1.02 HOXC12 TTTTATTRC 3.1e-012 4.1e-015 -33.12 0.0 206 492 352 595 0.41870 1.7e-017 245 3 M5553_1.02 HOXC13 CYAATAAAAH 5.6e-015 7.5e-018 -39.43 0.0 153 491 292 591 0.31161 3.1e-020 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 2.2e-011 2.9e-014 -31.17 0.0 239 491 370 561 0.48676 1.2e-016 245 3 M5557_1.02 HOXD12 GTAATAAAA 6.4e-014 8.5e-017 -37.00 0.0 198 492 346 592 0.40244 3.5e-019 245 3 M5583_1.02 ISL2 YTAAKTGC 1.9e-003 2.6e-006 -12.88 0.0 197 493 306 594 0.39959 1.0e-008 246 3 M5584_1.02 ISX YTAATCTAATTAR 2.5e0000 3.3e-003 -5.72 0.0 168 488 186 417 0.34426 1.4e-005 243 3 M5587_1.02 JDP2 ATGASTCAT 6.4e-009 8.6e-012 -25.48 0.0 176 492 259 494 0.35772 3.5e-014 245 3 M5594_1.02 LBX2 CTBRANSTRATTA 4.8e0000 6.4e-003 -5.06 0.0 320 488 426 579 0.65574 2.6e-005 243 3 M5602_1.02 LHX9 YTAATTRN 2.1e-004 2.8e-007 -15.10 0.0 253 493 377 592 0.51318 1.1e-009 246 3 M5604_1.02 LMX1A YTAATTAA 7.9e-004 1.1e-006 -13.77 0.0 169 493 261 565 0.34280 4.3e-009 246 3 M5605_1.02 LMX1B TTAATTRN 9.4e-007 1.3e-009 -20.49 0.0 227 493 353 587 0.46045 5.1e-012 246 3 M5623_1.02 MEOX1 VSTAATTAHC 7.9e-005 1.1e-007 -16.07 0.0 267 491 386 575 0.54379 4.3e-010 245 3 M5624_1.02 MEOX2 DSTAATTAWN 2.2e-006 2.9e-009 -19.65 0.0 165 491 279 593 0.33605 1.2e-011 245 3 M5631_1.02 MIXL1 NBTAATTRVN 3.4e-004 4.5e-007 -14.60 0.0 253 491 375 589 0.51527 1.9e-009 245 3 M5635_1.02 MNX1 TTTAATTRNH 2.3e-011 3.1e-014 -31.11 0.0 181 491 316 590 0.36864 1.3e-016 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 6.7e-003 8.9e-006 -11.63 0.0 171 483 225 473 0.35404 3.7e-008 241 3 M5672_1.02 NOTO NBTAATTARN 1.3e-001 1.8e-004 -8.65 0.0 165 491 251 578 0.33605 7.2e-007 245 3 M5689_1.02 NRL DWWNTGCTGAC 6.0e0000 8.1e-003 -4.82 0.0 242 490 344 597 0.49388 3.3e-005 244 3 M5714_1.02 PHOX2A TAATYYAATTA 1.0e-001 1.4e-004 -8.89 0.0 156 490 229 546 0.31837 5.6e-007 244 3 M5715_1.02 PHOX2B TAATYYAATTA 2.3e-002 3.1e-005 -10.38 0.0 126 490 198 553 0.25714 1.3e-007 244 3 M5746_1.02 POU6F2 WTAATKAGST 8.3e-005 1.1e-007 -16.01 0.0 171 491 269 566 0.34827 4.5e-010 245 3 M5771_1.02 RAX DYTAATTRRY 2.6e-003 3.4e-006 -12.58 0.0 227 491 338 584 0.46232 1.4e-008 245 3 M5772_1.02 RAX2 BTAATTRR 2.2e-003 2.9e-006 -12.75 0.0 253 493 370 588 0.51318 1.2e-008 246 3 M5807_1.02 SHOX2 YTAATTRR 3.6e-002 4.8e-005 -9.95 0.0 123 493 202 587 0.24949 1.9e-007 246 3 M5941_1.02 UNCX NTAATYBAATTAN 4.5e-004 6.1e-007 -14.31 0.0 180 488 281 573 0.36885 2.5e-009 243 3 M5944_1.02 VAX1 YTAATTAN 1.0e-006 1.4e-009 -20.42 0.0 227 493 355 591 0.46045 5.5e-012 246 3 M5945_1.02 VAX2 YTAATTAN 2.8e-006 3.7e-009 -19.41 0.0 227 493 354 592 0.46045 1.5e-011 246 3 M5949_1.02 VSX1 YTAATTAN 1.4e-003 1.9e-006 -13.18 0.0 227 493 334 576 0.46045 7.7e-009 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 5.6e-007 7.4e-010 -21.02 0.0 289 489 278 364 0.59100 3.0e-012 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 3.0e-015 4.1e-018 -40.05 0.0 247 491 409 593 0.50305 1.7e-020 245 3 M6141_1.02 ALX1 TAATBYAATTAY 6.7e-002 8.9e-005 -9.33 0.0 171 489 252 557 0.34969 3.6e-007 244 3 M6152_1.02 ATF1 VTGACGTCAV 1.1e-003 1.5e-006 -13.39 0.0 267 491 335 500 0.54379 6.2e-009 245 3 M6157_1.02 BARX2 TYRWTAATKR 2.6e-003 3.5e-006 -12.56 0.0 189 491 287 574 0.38493 1.4e-008 245 3 M6166_1.02 CDC5L RWTAYRTTAAMWCVC 1.4e0000 1.9e-003 -6.28 0.0 202 486 279 548 0.41564 7.7e-006 242 3 M6167_1.02 CDX1 HCATAAAD 4.7e-008 6.3e-011 -23.49 0.0 195 493 323 594 0.39554 2.6e-013 246 3 M6181_1.02 CREM CRVTGACGTCA 3.1e-002 4.1e-005 -10.10 0.0 286 490 370 535 0.58367 1.7e-007 244 3 M6182_1.02 CRX YTAATCHB 2.5e-002 3.3e-005 -10.30 0.0 23 493 58 592 0.04665 1.4e-007 246 3 M6189_1.02 DLX3 GMTAATTRSW 2.1e-003 2.8e-006 -12.78 0.0 323 491 434 566 0.65784 1.2e-008 245 3 M6197_1.02 E4F1 YGTKACGTC 6.6e0000 8.9e-003 -4.73 0.0 278 492 297 451 0.56504 3.6e-005 245 3 M6228_1.02 FOSB CTGACTCAYV 2.8e-001 3.7e-004 -7.91 0.0 139 491 218 585 0.28310 1.5e-006 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 9.5e-012 1.3e-014 -32.00 0.0 202 488 345 590 0.41393 5.2e-017 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 2.0e-011 2.6e-014 -31.27 0.0 258 486 377 534 0.53086 1.1e-016 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 7.6e0000 1.0e-002 -4.59 0.0 52 486 84 508 0.10700 4.2e-005 242 3 M6237_1.02 FOXD3 AAACAAACA 1.1e-009 1.5e-012 -27.21 0.0 148 492 268 594 0.30081 6.2e-015 245 3 M6238_1.02 FOXF1 WAAATAAACAW 3.4e-016 4.5e-019 -42.24 0.0 180 490 327 584 0.36735 1.8e-021 244 3 M6239_1.02 FOXF2 HWADGTAAACA 1.2e-017 1.6e-020 -45.61 0.0 166 490 312 581 0.33878 6.4e-023 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 4.9e-015 6.5e-018 -39.58 0.0 147 491 282 588 0.29939 2.7e-020 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 1.0e-003 1.3e-006 -13.53 0.0 126 488 207 560 0.25820 5.5e-009 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 4.0e-004 5.4e-007 -14.44 0.0 144 488 244 597 0.29508 2.2e-009 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 1.1e-005 1.5e-008 -18.03 0.0 135 485 237 589 0.27835 6.1e-011 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 1.1e-011 1.5e-014 -31.81 0.0 132 488 255 594 0.27049 6.3e-017 243 3 M6247_1.02 FOXO4 MRTAAACAA 2.8e-008 3.7e-011 -24.02 0.0 154 492 269 588 0.31301 1.5e-013 245 3 M6249_1.02 FOXP3 AAWCAMATT 1.4e0000 1.9e-003 -6.27 0.0 156 492 237 589 0.31707 7.8e-006 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 6.8e-005 9.0e-008 -16.22 0.0 181 489 265 527 0.37014 3.7e-010 244 3 M6256_1.02 GATA4 RSWGATAAV 1.1e-002 1.5e-005 -11.10 0.0 178 492 278 592 0.36179 6.2e-008 245 3 M6258_1.02 GATA6 NWGATAA 6.5e-007 8.7e-010 -20.87 0.0 178 494 292 584 0.36032 3.5e-012 246 3 M6282_1.02 HNF1B GTTAAWYATTAACY 6.9e-001 9.2e-004 -6.99 0.0 167 487 243 557 0.34292 3.8e-006 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 4.0e-006 5.3e-009 -19.05 0.0 197 489 312 577 0.40286 2.2e-011 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 6.4e-010 8.5e-013 -27.79 0.0 152 490 271 581 0.31020 3.5e-015 244 3 M6292_1.02 HOXA5 CATTAATYAR 4.7e-002 6.3e-005 -9.67 0.0 169 491 254 567 0.34420 2.6e-007 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 2.6e-005 3.5e-008 -17.16 0.0 222 488 283 471 0.45492 1.5e-010 243 3 M6297_1.02 HOXB7 MATYAATCAA 1.5e-007 2.0e-010 -22.34 0.0 187 491 279 522 0.38086 8.1e-013 245 3 M6298_1.02 HOXB8 BMATTAATCAA 5.5e-006 7.4e-009 -18.73 0.0 176 490 252 501 0.35918 3.0e-011 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 9.5e0000 1.3e-002 -4.37 0.0 198 486 185 363 0.40741 5.3e-005 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 2.7e-005 3.6e-008 -17.13 0.0 217 487 329 569 0.44559 1.5e-010 243 3 M6301_1.02 HOXD10 AATTAAARCA 5.6e-004 7.4e-007 -14.11 0.0 123 491 213 592 0.25051 3.0e-009 245 3 M6303_1.02 HOXD4 TTAATTKW 1.8e-001 2.5e-004 -8.31 0.0 159 493 244 585 0.32252 1.0e-006 246 3 M6304_1.02 HOXD9 HMATNAAWYT 8.9e-013 1.2e-015 -34.36 0.0 125 491 247 592 0.25458 4.9e-018 245 3 M6315_1.02 ISL1 SYTAATR 1.8e0000 2.4e-003 -6.04 0.0 196 494 284 587 0.39676 9.7e-006 246 3 M6331_1.02 MAFB WGCTGACDS 2.3e-001 3.0e-004 -8.10 0.0 232 492 340 597 0.47154 1.2e-006 245 3 M6332_1.02 MAF KTGCTGAC 4.2e0000 5.7e-003 -5.17 0.0 251 493 354 596 0.50913 2.3e-005 246 3 M6333_1.02 MAFG HATGACT 1.2e-002 1.5e-005 -11.08 0.0 294 494 415 592 0.59514 6.3e-008 246 3 M6343_1.02 MEIS1 CDTWAAVCTGTCA 4.9e0000 6.5e-003 -5.04 0.0 364 488 460 562 0.74590 2.7e-005 243 3 M6357_1.02 NANOG KTTAATGG 1.7e-002 2.3e-005 -10.69 0.0 123 493 203 584 0.24949 9.3e-008 246 3 M6359_1.02 NFE2L1 NATGACD 6.8e-005 9.1e-008 -16.22 0.0 288 494 421 596 0.58300 3.7e-010 246 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 3.4e-002 4.5e-005 -10.01 0.0 263 489 377 586 0.53783 1.8e-007 244 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 9.8e-002 1.3e-004 -8.94 0.0 141 489 216 561 0.28834 5.4e-007 244 3 M6376_1.02 NKX2-5 TYAAGTG 4.4e-002 5.8e-005 -9.75 0.0 212 494 318 596 0.42915 2.4e-007 246 3 M6380_1.02 NOBOX HTAATTRSY 1.8e-004 2.4e-007 -15.25 0.0 220 492 333 582 0.44715 9.7e-010 245 3 M6401_1.02 OTX2 HYYTAATCCBWKHDM 6.5e0000 8.7e-003 -4.75 0.0 92 486 145 559 0.18930 3.6e-005 242 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 1.5e-002 2.0e-005 -10.81 0.0 269 483 362 541 0.55694 8.4e-008 241 3 M6412_1.02 PBX1 VHMATCAATCAAWTH 1.2e-002 1.6e-005 -11.03 0.0 172 486 264 570 0.35391 6.7e-008 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 9.4e-004 1.3e-006 -13.58 0.0 126 486 216 588 0.25926 5.2e-009 242 3 M6415_1.02 PDX1 CTAATTACY 1.2e-006 1.6e-009 -20.24 0.0 262 492 369 545 0.53252 6.6e-012 245 3 M6419_1.02 PKNOX1 HATCARTCAABYB 6.0e-003 8.0e-006 -11.73 0.0 354 488 473 575 0.72541 3.3e-008 243 3 M6426_1.02 POU3F2 CATRAATWWT 7.3e0000 9.8e-003 -4.63 0.0 145 491 217 583 0.29532 4.0e-005 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 4.0e-003 5.4e-006 -12.14 0.0 162 488 241 540 0.33197 2.2e-008 243 3 M6440_1.02 PRRX2 YTAATTR 3.4e-001 4.5e-004 -7.71 0.0 222 494 309 565 0.44939 1.8e-006 246 3 M6471_1.02 SOX13 YATTGTTY 8.2e-002 1.1e-004 -9.12 0.0 153 493 241 593 0.31034 4.5e-007 246 3 M6490_1.02 SRY DAAACAAWR 3.8e-002 5.1e-005 -9.88 0.0 152 492 242 593 0.30894 2.1e-007 245 3 M6510_1.02 TEF TGTTTATRTAAMTK 5.6e-008 7.4e-011 -23.32 0.0 273 487 403 569 0.56057 3.1e-013 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 2.9e-002 3.9e-005 -10.15 0.0 192 490 256 507 0.39184 1.6e-007 244 3 M6555_1.02 ZNF333 BKATAATGA 2.3e0000 3.1e-003 -5.78 0.0 162 492 222 532 0.32927 1.3e-005 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).