Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
DGCWSWGATTT 11 TGCTGTGATTT
MAHAMAMAAAHAAAHAMAHAMAHAMAHAMAW 31 AAAAAAAAAACAAACAAACAAAAACACAAAT
RTGACTCAY 9 ATGACTCAT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.280 C 0.220 G 0.220 T 0.280

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
RTGACTCAY MEME-3 chr10 + 3469295 3469303 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr6 + 3612923 3612931 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr16 - 9048017 9048025 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr19 + 16279340 16279348 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr8 + 17540168 17540176 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chrX + 18873272 18873280 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chrX + 24145971 24145979 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr10 + 32338389 32338397 5.15e-06 0.103 atgactcat
RTGACTCAY MEME-3 chr18 + 59516605 59516613 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr12 + 65631810 65631818 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr12 + 71426837 71426845 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr17 - 71438962 71438970 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr5 + 79771456 79771464 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr10 + 89862106 89862114 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr11 + 93986843 93986851 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr13 - 97944537 97944545 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr15 - 98609778 98609786 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr12 - 103925445 103925453 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr13 - 110412322 110412330 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr12 - 116718769 116718777 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr5 - 123157915 123157923 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr3 - 124429291 124429299 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr3 + 140953135 140953143 5.15e-06 0.103 atgactcat
RTGACTCAY MEME-3 chr6 + 149233599 149233607 5.15e-06 0.103 atgaCTCAT
RTGACTCAY MEME-3 chr1 - 151988610 151988618 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr1 + 183139753 183139761 5.15e-06 0.103 ATGACTCAT
RTGACTCAY MEME-3 chr1 + 232732510 232732518 5.15e-06 0.103 atgactcat
RTGACTCAY MEME-3 chr10 - 2950078 2950086 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr18 + 3409330 3409338 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr12 + 7860688 7860696 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr3 - 8506755 8506763 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr19 + 16279459 16279467 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr1 - 17233212 17233220 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr8 - 18748011 18748019 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr12 + 25333866 25333874 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr6 + 29516250 29516258 1.32e-05 0.103 atgactcac
RTGACTCAY MEME-3 chr16 - 30549572 30549580 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr12 + 31491916 31491924 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr6 + 32969990 32969998 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr21 + 36210236 36210244 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr20 + 38460360 38460368 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr1 + 41870269 41870277 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr1 - 41870329 41870337 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr18 + 45051114 45051122 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr20 - 50285607 50285615 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr18 + 50868815 50868823 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr12 - 51971532 51971540 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr16 - 54489453 54489461 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr14 - 58829789 58829797 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr18 - 59516508 59516516 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr6 + 63527852 63527860 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr11 + 70483235 70483243 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr11 + 70483427 70483435 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr15 + 72107277 72107285 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr5 - 74632306 74632314 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr7 + 80883629 80883637 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr10 - 89862246 89862254 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr5 - 99900733 99900741 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr10 - 100044655 100044663 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr10 - 103896460 103896468 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr3 - 114056909 114056917 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr12 - 114914452 114914460 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr7 - 116218491 116218499 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr6 - 116529709 116529717 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr10 - 120978653 120978661 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr12 + 122368671 122368679 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr10 - 132700957 132700965 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr7 + 133492274 133492282 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr6 - 138593627 138593635 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr5 + 142223820 142223828 1.32e-05 0.103 gtgactcat
RTGACTCAY MEME-3 chr7 - 151426656 151426664 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr7 - 151551979 151551987 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr4 - 169622144 169622152 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr4 - 173074731 173074739 1.32e-05 0.103 ATGACTCAC
RTGACTCAY MEME-3 chr1 + 198763597 198763605 1.32e-05 0.103 GTGACTCAT
RTGACTCAY MEME-3 chr1 + 218660855 218660863 1.32e-05 0.103 atgactcac
RTGACTCAY MEME-3 chr10 - 17228524 17228532 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr17 - 20937098 20937106 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr16 + 25127092 25127100 1.64e-05 0.103 gtgactcac
RTGACTCAY MEME-3 chr17 - 32123954 32123962 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chrX + 38061524 38061532 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr13 + 41311051 41311059 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr8 - 41798379 41798387 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr6 + 43322287 43322295 1.64e-05 0.103 gtgactcac
RTGACTCAY MEME-3 chr2 + 66364580 66364588 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr6 + 82260495 82260503 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr1 - 85275368 85275376 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr13 - 100364047 100364055 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr12 - 107759615 107759623 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr8 + 117985859 117985867 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chrX - 119472703 119472711 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr12 + 122518025 122518033 1.64e-05 0.103 gtgactcac
RTGACTCAY MEME-3 chr6 - 138593359 138593367 1.64e-05 0.103 GTGACTCAC
RTGACTCAY MEME-3 chr1 + 234501335 234501343 1.64e-05 0.103 gtgactcac
RTGACTCAY MEME-3 chr16 - 9047943 9047951 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr16 + 9047972 9047980 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr10 - 12448847 12448855 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr16 - 15590993 15591001 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr18 - 22032622 22032630 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr12 + 29754815 29754823 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr10 - 36424143 36424151 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chrX - 38061512 38061520 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr19 + 40646301 40646309 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr1 - 41870289 41870297 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr17 - 44901863 44901871 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr6 - 46325846 46325854 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr16 + 51557207 51557215 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr12 - 57112277 57112285 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr20 - 57323155 57323163 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr1 + 64506539 64506547 2.44e-05 0.11 atgactcag
RTGACTCAY MEME-3 chr15 - 71747697 71747705 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr15 + 71747726 71747734 2.44e-05 0.11 atgactcag
RTGACTCAY MEME-3 chr18 - 75213895 75213903 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr14 + 90388632 90388640 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr1 + 92797556 92797564 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr2 + 100903050 100903058 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr13 + 110965382 110965390 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr13 + 110965427 110965435 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr13 + 110965444 110965452 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr13 + 110965472 110965480 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr13 + 110965489 110965497 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr13 + 110965517 110965525 2.44e-05 0.11 ctgactcat
RTGACTCAY MEME-3 chr6 - 111591617 111591625 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr5 + 126044208 126044216 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr1 - 182617933 182617941 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr3 - 194135334 194135342 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr3 - 195102841 195102849 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr2 + 200787556 200787564 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr1 - 218660919 218660927 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr1 - 229894029 229894037 2.44e-05 0.11 CTGACTCAT
RTGACTCAY MEME-3 chr1 + 234700398 234700406 2.44e-05 0.11 ATGACTCAG
RTGACTCAY MEME-3 chr16 - 15591115 15591123 3.07e-05 0.111 CTGACTCAC
RTGACTCAY MEME-3 chr16 + 22647282 22647290 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr16 + 25049918 25049926 3.07e-05 0.111 ctgactcac
RTGACTCAY MEME-3 chr8 - 28118640 28118648 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr5 + 34598373 34598381 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr19 + 39996616 39996624 3.07e-05 0.111 CTGACTCAC
RTGACTCAY MEME-3 chr19 - 40920956 40920964 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr19 - 40921195 40921203 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr10 + 44752990 44752998 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr3 - 58471518 58471526 3.07e-05 0.111 CTGACTCAC
RTGACTCAY MEME-3 chr1 - 66543676 66543684 3.07e-05 0.111 CTGACTCAC
RTGACTCAY MEME-3 chr15 - 67792636 67792644 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr10 - 89862206 89862214 3.07e-05 0.111 CTGACTCAC
RTGACTCAY MEME-3 chr14 - 90388593 90388601 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr15 - 98896981 98896989 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr15 + 98897228 98897236 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr9 - 133368668 133368676 3.07e-05 0.111 CTGACTCAC
RTGACTCAY MEME-3 chr1 + 151980710 151980718 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr5 - 158287916 158287924 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr3 - 159634609 159634617 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr1 + 226821406 226821414 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr2 - 234363203 234363211 3.07e-05 0.111 GTGACTCAG
RTGACTCAY MEME-3 chr1 + 236097079 236097087 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097118 236097126 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097147 236097155 3.07e-05 0.111 gTGACTCAG
RTGACTCAY MEME-3 chr1 + 236097176 236097184 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097205 236097213 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097234 236097242 3.07e-05 0.111 gTGACTCAG
RTGACTCAY MEME-3 chr1 + 236097263 236097271 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097292 236097300 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097321 236097329 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097350 236097358 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097379 236097387 3.07e-05 0.111 gtgactcag
RTGACTCAY MEME-3 chrX - 1800060 1800068 4.39e-05 0.146 ATGACTAAT
RTGACTCAY MEME-3 chr5 + 14168401 14168409 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr11 - 19952543 19952551 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr12 + 31491894 31491902 4.39e-05 0.146 ATGACTAAT
RTGACTCAY MEME-3 chr4 + 53943857 53943865 4.39e-05 0.146 ATGACTAAT
RTGACTCAY MEME-3 chr6 + 90645820 90645828 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr5 - 96630062 96630070 4.39e-05 0.146 ATGACTAAT
RTGACTCAY MEME-3 chr2 - 100903024 100903032 4.39e-05 0.146 ATGACTAAT
RTGACTCAY MEME-3 chr7 + 133492548 133492556 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr5 - 136123432 136123440 4.39e-05 0.146 ATGACTAAT
RTGACTCAY MEME-3 chr6 + 150418688 150418696 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr6 - 151068059 151068067 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr1 + 197684008 197684016 4.39e-05 0.146 ATTACTCAT
RTGACTCAY MEME-3 chr5 - 14156788 14156796 6.45e-05 0.193 ATGACTAAC
RTGACTCAY MEME-3 chr7 - 22052399 22052407 6.45e-05 0.193 ATTACTCAC
RTGACTCAY MEME-3 chr19 - 34218638 34218646 6.45e-05 0.193 ATGACTAAC
RTGACTCAY MEME-3 chr6 + 35597108 35597116 6.45e-05 0.193 ATGACTAAC
RTGACTCAY MEME-3 chr3 - 44995391 44995399 6.45e-05 0.193 GTGACTAAT
RTGACTCAY MEME-3 chr13 + 45178856 45178864 6.45e-05 0.193 gttactcat
RTGACTCAY MEME-3 chr19 - 46976021 46976029 6.45e-05 0.193 ATTACTCAC
RTGACTCAY MEME-3 chr20 - 53610329 53610337 6.45e-05 0.193 ATGACTAAC
RTGACTCAY MEME-3 chr2 - 54572452 54572460 6.45e-05 0.193 ATTACTCAC
RTGACTCAY MEME-3 chr11 + 72308955 72308963 6.45e-05 0.193 GTTACTCAT
RTGACTCAY MEME-3 chr10 - 87846077 87846085 6.45e-05 0.193 ATTACTCAC
RTGACTCAY MEME-3 chr1 + 89719676 89719684 6.45e-05 0.193 GTGACTAAT
RTGACTCAY MEME-3 chr13 + 100364140 100364148 6.45e-05 0.193 GTGACTAAT
RTGACTCAY MEME-3 chr5 - 124656130 124656138 6.45e-05 0.193 GTGACTAAT
RTGACTCAY MEME-3 chr5 - 124729829 124729837 6.45e-05 0.193 GTGACTAAT
RTGACTCAY MEME-3 chr5 + 125409260 125409268 6.45e-05 0.193 ATTACTCAC
RTGACTCAY MEME-3 chr1 + 160244587 160244595 6.45e-05 0.193 ATGACTAAC
RTGACTCAY MEME-3 chr5 - 175378675 175378683 6.45e-05 0.193 ATGACTAAC
RTGACTCAY MEME-3 chr1 - 214439337 214439345 6.45e-05 0.193 GTGACTAAT
RTGACTCAY MEME-3 chr12 - 12398453 12398461 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr4 + 31090009 31090017 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr20 + 53611714 53611722 6.76e-05 0.193 ctgactcag
RTGACTCAY MEME-3 chr17 + 68381130 68381138 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr15 - 74546292 74546300 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr12 + 80188005 80188013 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr7 - 80877117 80877125 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr5 - 125408915 125408923 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr5 + 158288010 158288018 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr4 - 176207826 176207834 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr1 + 234700531 234700539 6.76e-05 0.193 CTGACTCAG
RTGACTCAY MEME-3 chr10 + 7311499 7311507 7.57e-05 0.211 GTGACTAAC
RTGACTCAY MEME-3 chr20 + 50285679 50285687 7.57e-05 0.211 GTTACTCAC
RTGACTCAY MEME-3 chr17 - 65022790 65022798 7.57e-05 0.211 GTTACTCAC
RTGACTCAY MEME-3 chr17 + 65023218 65023226 7.57e-05 0.211 gttactcac
RTGACTCAY MEME-3 chr15 - 98897154 98897162 7.57e-05 0.211 GTGACTAAC
RTGACTCAY MEME-3 chr10 - 2882876 2882884 8.6e-05 0.236 GTGACGCAT
RTGACTCAY MEME-3 chr1 + 101288681 101288689 8.6e-05 0.236 GTGACGCAT
RTGACTCAY MEME-3 chr10 + 116891420 116891428 8.6e-05 0.236 ATGACGCAC
RTGACTCAY MEME-3 chr1 + 38785421 38785429 8.85e-05 0.242 gtgacgcac
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif RTGACTCAY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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