# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:48 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/GFI1B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:49 PST 2017)
#        host: indra
#        when: Mon Dec 18 16:07:16 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.207 G 0.214 T 0.286


MOTIF SWGATTW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     SWGATTW    WAATCWS        311         73   1.3e-051   3.9e-047
#          CTGATTT    AAATCAG         87         13   5.6e-016   1.7e-011
#          GTGATTT    AAATCAC         87         15   8.0e-015   2.5e-010
#          CAGATTT    AAATCTG         68         15   4.6e-010   1.4e-005
#          GAGATTT    AAATCTC         62         15   1.1e-008   3.6e-004
#          GAGATTA    TAATCTC         26          5   8.0e-005   2.5e+000
#          GTGATTA    TAATCAC         23          5   4.0e-004   1.2e+001
#          CTGATTA    TAATCAG         15          3   3.6e-003   1.1e+002
#          CAGATTA    TAATCTG         18          5   5.0e-003   1.5e+002

letter-probability matrix: alength= 4 w= 7 nsites= 395 E= 3.9e-047
0.000000 0.481013 0.518987 0.000000
0.455696 0.000000 0.000000 0.544304
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.202532 0.000000 0.000000 0.797468


MOTIF RTAAAY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      RTAAAY     RTTTAY        250        120   2.2e-016   6.6e-012
#           ATAAAC     GTTTAT         94         28   1.1e-010   3.2e-006
#           GTAAAT     ATTTAC         67         27   1.1e-005   3.3e-001
#           ATAAAT     ATTTAT         86         49   4.7e-004   1.4e+001
#           GTAAAC     GTTTAC         52         29   5.5e-003   1.7e+002

letter-probability matrix: alength= 4 w= 6 nsites= 329 E= 6.6e-012
0.635258 0.000000 0.364742 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.446809 0.000000 0.553191


MOTIF TGACTCAB DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAB   VTGAGTCA         59          3   2.2e-015   6.6e-011
#         TGACTCAT   ATGAGTCA         30          2   8.9e-008   2.6e-003
#         TGACTCAC   GTGAGTCA         19          1   1.8e-005   5.2e-001
#         TGACTCAG   CTGAGTCA         13          0   1.1e-004   3.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 6.6e-011
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.279412 0.220588 0.500000


MOTIF AAAACMA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AAAACMA    TKGTTTT        106         42   1.0e-008   3.0e-004
#          AAAACAA    TTGTTTT         74         25   1.4e-007   4.2e-003
#          AAAACCA    TGGTTTT         42         19   1.8e-003   5.2e+001

letter-probability matrix: alength= 4 w= 7 nsites= 124 E= 3.0e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.653226 0.346774 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 21.40 seconds