# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 AAAAGARCA MEME-1 AAAAGARCA 6.2e-014 8.4e-017 -37.02 0.0 160 492 256 492 0.32520 3.4e-019 245 1 HAAHAHAAACAM MEME-2 HAAHAHAAACAM 1.7e-002 2.3e-005 -10.69 0.0 71 489 79 302 0.14519 9.3e-008 244 1 AAAWGGCWV MEME-3 AAAWGGCWV 1.9e-011 2.5e-014 -31.30 0.0 112 492 216 563 0.22764 1.0e-016 245 2 HRTAAA DREME-1 HATAAA 1.0e-008 1.4e-011 -24.98 0.0 119 495 219 576 0.24040 5.7e-014 247 2 AARWGGC DREME-2 AARWGGC 4.1e-011 5.6e-014 -30.52 0.0 118 494 134 292 0.23887 2.3e-016 246 2 GATAA DREME-3 GATAA 4.5e-009 6.1e-012 -25.83 0.0 204 496 246 413 0.41129 2.5e-014 247 2 CTGCTS DREME-4 CTGCTS 4.0e0000 5.4e-003 -5.22 0.0 299 495 293 417 0.60404 2.2e-005 247 2 CWGTCA DREME-5 CWGTCA 5.5e0000 7.4e-003 -4.91 0.0 291 495 248 358 0.58788 3.0e-005 247 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNN 9.8e0000 1.3e-002 -4.33 0.0 235 491 334 598 0.47862 5.4e-005 245 3 M0718_1.02 FOXK1 DNRTMAACAH 2.0e-007 2.7e-010 -22.02 0.0 185 491 310 596 0.37678 1.1e-012 245 3 M0719_1.02 FOXG1 RTAAACAW 1.0e-005 1.4e-008 -18.09 0.0 143 493 237 566 0.29006 5.7e-011 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 1.5e-001 2.1e-004 -8.48 0.0 111 489 186 594 0.22699 8.5e-007 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 3.2e-003 4.3e-006 -12.35 0.0 173 493 275 595 0.35091 1.8e-008 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 1.8e-003 2.5e-006 -12.91 0.0 119 491 205 591 0.24236 1.0e-008 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 1.6e-009 2.2e-012 -26.86 0.0 181 491 311 592 0.36864 8.8e-015 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 5.2e-001 7.1e-004 -7.25 0.0 220 492 299 549 0.44715 2.9e-006 245 3 M0892_1.02 EMX1 NYTAATKAVN 5.4e0000 7.3e-003 -4.92 0.0 201 491 284 576 0.40937 3.0e-005 245 3 M0894_1.02 LBX1 TTAATTAG 7.7e0000 1.0e-002 -4.56 0.0 149 493 215 565 0.30223 4.3e-005 246 3 M0896_1.02 VENTX TTAATTAG 7.8e-002 1.1e-004 -9.16 0.0 159 493 238 563 0.32252 4.3e-007 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 4.1e-014 5.6e-017 -37.43 0.0 179 491 320 585 0.36456 2.3e-019 245 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.6e-001 2.1e-004 -8.46 0.0 166 492 232 529 0.33740 8.6e-007 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 3.3e0000 4.5e-003 -5.40 0.0 174 492 246 559 0.35366 1.8e-005 245 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 3.5e-001 4.8e-004 -7.64 0.0 218 494 239 432 0.44130 1.9e-006 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 4.3e-002 5.8e-005 -9.75 0.0 372 492 492 584 0.75610 2.4e-007 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 4.3e0000 5.8e-003 -5.15 0.0 188 492 266 570 0.38211 2.4e-005 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 4.6e-001 6.2e-004 -7.38 0.0 244 492 338 570 0.49593 2.5e-006 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 3.6e-012 4.9e-015 -32.95 0.0 194 492 142 206 0.39431 2.0e-017 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 6.7e-004 9.1e-007 -13.91 0.0 166 492 252 551 0.33740 3.7e-009 245 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 4.3e-010 5.7e-013 -28.19 0.0 170 492 287 566 0.34553 2.3e-015 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 2.0e-002 2.7e-005 -10.52 0.0 288 492 412 598 0.58537 1.1e-007 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 1.4e-002 1.9e-005 -10.88 0.0 170 492 245 537 0.34553 7.7e-008 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 3.9e-004 5.3e-007 -14.46 0.0 166 492 246 532 0.33740 2.1e-009 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 1.2e0000 1.7e-003 -6.40 0.0 7 493 23 552 0.01420 6.7e-006 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.6e-003 2.1e-006 -13.06 0.0 164 492 260 582 0.33333 8.7e-009 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 1.1e-001 1.4e-004 -8.86 0.0 421 491 534 578 0.85743 5.8e-007 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 5.9e-014 8.0e-017 -37.07 0.0 193 491 337 584 0.39308 3.3e-019 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 3.6e-001 4.9e-004 -7.62 0.0 188 492 269 562 0.38211 2.0e-006 245 3 M1581_1.02 (CIC)_(Mus_musculus)_(DBD_1.00) NNTGCTGACW 5.9e0000 8.0e-003 -4.83 0.0 331 491 442 589 0.67413 3.3e-005 245 3 M1863_1.02 FOXD1 GTAAACAW 2.0e-005 2.7e-008 -17.41 0.0 167 493 263 561 0.33874 1.1e-010 246 3 M1868_1.02 GATA2 DSAGATAAGAAHHH 8.1e-003 1.1e-005 -11.42 0.0 259 487 365 567 0.53183 4.5e-008 243 3 M2267_1.02 CDX2 TTTTATKRCHB 1.2e-008 1.6e-011 -24.88 0.0 162 490 275 570 0.33061 6.4e-014 244 3 M2278_1.02 FOS DVTGASTCATB 7.9e-001 1.1e-003 -6.85 0.0 146 490 200 510 0.29796 4.4e-006 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 5.3e0000 7.1e-003 -4.95 0.0 100 486 162 587 0.20576 2.9e-005 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.3e-005 3.1e-008 -17.28 0.0 264 488 374 555 0.54098 1.3e-010 243 3 M2292_1.02 JUND DRTGASTCATS 5.6e0000 7.6e-003 -4.89 0.0 300 490 333 474 0.61224 3.1e-005 244 3 M2385_1.02 FOXP2 RWGTAAACAVR 3.1e-001 4.2e-004 -7.77 0.0 186 490 276 581 0.37959 1.7e-006 244 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 5.3e-010 7.2e-013 -27.96 0.0 184 486 317 589 0.37860 3.0e-015 242 3 M4600_1.02 GATA1 NSAGATAAGVV 1.9e-006 2.5e-009 -19.80 0.0 262 490 390 579 0.53469 1.0e-011 244 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 2.4e0000 3.3e-003 -5.71 0.0 226 484 239 418 0.46694 1.4e-005 241 3 M4702_1.02 NR2F2 TGACCTTT 8.9e0000 1.2e-002 -4.43 0.0 159 493 239 599 0.32252 4.9e-005 246 3 M4840_1.02 (FEZF1)_(Drosophila_melanogaster)_(DBD_0.91) AAAWGMGCAWC 1.2e-010 1.6e-013 -29.48 0.0 140 490 259 586 0.28571 6.5e-016 244 3 M4930_1.02 (NPAS4)_(Drosophila_melanogaster)_(DBD_0.61) RADTCGTGACT 8.4e0000 1.1e-002 -4.48 0.0 260 490 230 363 0.53061 4.7e-005 244 3 M5294_1.02 BARHL2 NHTAAAYGNY 1.8e-003 2.4e-006 -12.94 0.0 379 491 501 579 0.77189 9.8e-009 245 3 M5310_1.02 BSX NTAATBRS 1.7e-002 2.3e-005 -10.66 0.0 171 493 257 565 0.34686 9.5e-008 246 3 M5322_1.02 CPEB1 TTTTTATT 1.7e0000 2.2e-003 -6.10 0.0 205 493 297 590 0.41582 9.1e-006 246 3 M5349_1.02 DUXA NTRAYYTAATCAN 4.1e0000 5.6e-003 -5.19 0.0 120 488 173 532 0.24590 2.3e-005 243 3 M5414_1.02 ESX1 DNTAATTRRN 6.1e-002 8.2e-005 -9.41 0.0 173 491 263 580 0.35234 3.3e-007 245 3 M5446_1.02 FOXD4L2 RTAAACA 7.8e-014 1.1e-016 -36.79 0.0 186 494 330 593 0.37652 4.3e-019 246 3 M5460_1.02 FOXL1 RTAAACA 2.4e-014 3.2e-017 -37.97 0.0 208 494 356 588 0.42105 1.3e-019 246 3 M5502_1.02 GSX1 NBTAATKRSN 3.2e-001 4.4e-004 -7.73 0.0 239 491 338 579 0.48676 1.8e-006 245 3 M5503_1.02 GSX2 DYTAATKRVN 6.6e-003 8.9e-006 -11.63 0.0 159 491 250 579 0.32383 3.6e-008 245 3 M5518_1.02 HMX1 NDTTAATTGNT 8.4e-006 1.1e-008 -18.30 0.0 180 490 291 582 0.36735 4.6e-011 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 8.4e-004 1.1e-006 -13.69 0.0 204 490 315 589 0.41633 4.7e-009 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 2.3e-007 3.1e-010 -21.88 0.0 212 490 341 591 0.43265 1.3e-012 244 3 M5542_1.02 HOXB3 NYTAATKRNN 2.7e0000 3.7e-003 -5.60 0.0 159 491 234 574 0.32383 1.5e-005 245 3 M5543_1.02 HOXB5 NHTAATKRNN 3.5e0000 4.7e-003 -5.35 0.0 445 491 562 590 0.90631 1.9e-005 245 3 M5544_1.02 HOXC10 DTTTWATKDB 4.1e-012 5.5e-015 -32.84 0.0 189 491 330 592 0.38493 2.2e-017 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 1.5e-007 2.0e-010 -22.31 0.0 118 490 211 562 0.24082 8.4e-013 244 3 M5551_1.02 HOXC12 TTTTATTRC 2.2e-006 3.0e-009 -19.64 0.0 196 492 315 588 0.39837 1.2e-011 245 3 M5553_1.02 HOXC13 CYAATAAAAH 1.1e-008 1.5e-011 -24.90 0.0 185 491 308 581 0.37678 6.3e-014 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 1.4e-007 1.9e-010 -22.39 0.0 149 491 241 536 0.30346 7.7e-013 245 3 M5557_1.02 HOXD12 GTAATAAAA 9.2e-007 1.2e-009 -20.51 0.0 196 492 317 589 0.39837 5.1e-012 245 3 M5583_1.02 ISL2 YTAAKTGC 5.8e-001 7.8e-004 -7.16 0.0 287 493 398 591 0.58215 3.2e-006 246 3 M5587_1.02 JDP2 ATGASTCAT 1.5e0000 2.0e-003 -6.20 0.0 236 492 272 468 0.47967 8.3e-006 245 3 M5602_1.02 LHX9 YTAATTRN 1.3e0000 1.7e-003 -6.36 0.0 161 493 238 575 0.32657 7.1e-006 246 3 M5605_1.02 LMX1B TTAATTRN 1.3e0000 1.7e-003 -6.35 0.0 173 493 253 577 0.35091 7.1e-006 246 3 M5635_1.02 MNX1 TTTAATTRNH 6.2e-004 8.4e-007 -13.99 0.0 161 491 259 582 0.32790 3.4e-009 245 3 M5636_1.02 MSC AACAGCTGTT 2.4e0000 3.3e-003 -5.72 0.0 101 491 145 507 0.20570 1.3e-005 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 7.0e-001 9.4e-004 -6.97 0.0 65 483 94 441 0.13458 3.9e-006 241 3 M5660_1.02 NFIA TTGGCANNDTGCCAR 3.7e-001 5.0e-004 -7.60 0.0 232 486 203 336 0.47737 2.1e-006 242 3 M5662_1.02 NFIB TTGGCAHNDTGCCAR 7.9e-001 1.1e-003 -6.85 0.0 232 486 208 348 0.47737 4.4e-006 242 3 M5664_1.02 NFIX TTGGCANNNHGCCAR 9.4e0000 1.3e-002 -4.37 0.0 246 486 277 464 0.50617 5.3e-005 242 3 M5672_1.02 NOTO NBTAATTARN 8.0e-001 1.1e-003 -6.83 0.0 87 491 146 580 0.17719 4.4e-006 245 3 M5689_1.02 NRL DWWNTGCTGAC 2.6e0000 3.5e-003 -5.66 0.0 222 490 322 597 0.45306 1.4e-005 244 3 M5746_1.02 POU6F2 WTAATKAGST 2.9e-003 3.9e-006 -12.45 0.0 193 491 284 556 0.39308 1.6e-008 245 3 M5807_1.02 SHOX2 YTAATTRR 6.7e0000 9.1e-003 -4.70 0.0 7 493 22 574 0.01420 3.7e-005 246 3 M5944_1.02 VAX1 YTAATTAN 8.6e0000 1.2e-002 -4.46 0.0 87 493 140 577 0.17647 4.7e-005 246 3 M5945_1.02 VAX2 YTAATTAN 3.7e0000 4.9e-003 -5.31 0.0 219 493 306 577 0.44422 2.0e-005 246 3 M6114_1.02 FOXA1 WAWGYAAAYA 6.9e-013 9.4e-016 -34.60 0.0 197 491 341 590 0.40122 3.8e-018 245 3 M6139_1.02 AHR KCACGCRAH 6.9e-002 9.3e-005 -9.29 0.0 334 492 406 522 0.67886 3.8e-007 245 3 M6167_1.02 CDX1 HCATAAAD 4.9e-004 6.7e-007 -14.22 0.0 213 493 328 593 0.43205 2.7e-009 246 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 7.1e-007 9.6e-010 -20.77 0.0 194 488 316 587 0.39754 3.9e-012 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 8.4e-003 1.1e-005 -11.39 0.0 120 486 187 532 0.24691 4.7e-008 242 3 M6237_1.02 FOXD3 AAACAAACA 5.5e-001 7.5e-004 -7.20 0.0 248 492 351 587 0.50407 3.0e-006 245 3 M6238_1.02 FOXF1 WAAATAAACAW 6.3e-004 8.5e-007 -13.98 0.0 196 490 297 570 0.40000 3.5e-009 244 3 M6239_1.02 FOXF2 HWADGTAAACA 7.9e-007 1.1e-009 -20.65 0.0 198 490 316 578 0.40408 4.4e-012 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 1.3e-006 1.7e-009 -20.20 0.0 193 491 310 582 0.39308 6.9e-012 245 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 6.2e0000 8.4e-003 -4.78 0.0 64 488 113 595 0.13115 3.5e-005 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 3.0e0000 4.0e-003 -5.51 0.0 101 485 165 587 0.20825 1.7e-005 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 8.1e-003 1.1e-005 -11.42 0.0 100 488 178 595 0.20492 4.5e-008 243 3 M6247_1.02 FOXO4 MRTAAACAA 1.8e-001 2.4e-004 -8.33 0.0 184 492 276 585 0.37398 9.9e-007 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 2.7e-001 3.7e-004 -7.91 0.0 107 489 159 514 0.21881 1.5e-006 244 3 M6256_1.02 GATA4 RSWGATAAV 1.3e-007 1.8e-010 -22.46 0.0 210 492 338 589 0.42683 7.2e-013 245 3 M6258_1.02 GATA6 NWGATAA 6.5e-006 8.8e-009 -18.55 0.0 208 494 323 580 0.42105 3.6e-011 246 3 M6289_1.02 HOXA9 WCATAAAYYRTH 1.4e-001 1.9e-004 -8.56 0.0 235 489 329 565 0.48057 7.9e-007 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.1e-003 1.5e-006 -13.41 0.0 206 490 314 583 0.42041 6.2e-009 244 3 M6296_1.02 HOXB6 KKCATMAATCAWT 5.2e0000 7.0e-003 -4.97 0.0 122 488 154 460 0.25000 2.9e-005 243 3 M6297_1.02 HOXB7 MATYAATCAA 8.4e-002 1.1e-004 -9.08 0.0 163 491 210 476 0.33198 4.7e-007 245 3 M6298_1.02 HOXB8 BMATTAATCAA 3.0e-001 4.1e-004 -7.80 0.0 212 490 256 473 0.43265 1.7e-006 244 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 9.2e-001 1.2e-003 -6.70 0.0 199 487 282 562 0.40862 5.1e-006 243 3 M6301_1.02 HOXD10 AATTAAARCA 4.2e-002 5.6e-005 -9.78 0.0 145 491 230 584 0.29532 2.3e-007 245 3 M6304_1.02 HOXD9 HMATNAAWYT 1.4e-001 1.9e-004 -8.55 0.0 171 491 259 580 0.34827 7.9e-007 245 3 M6315_1.02 ISL1 SYTAATR 3.5e0000 4.7e-003 -5.35 0.0 154 494 223 565 0.31174 1.9e-005 246 3 M6332_1.02 MAF KTGCTGAC 2.3e0000 3.1e-003 -5.78 0.0 117 493 187 594 0.23732 1.3e-005 246 3 M6333_1.02 MAFG HATGACT 3.2e-002 4.3e-005 -10.06 0.0 336 494 462 596 0.68016 1.7e-007 246 3 M6343_1.02 MEIS1 CDTWAAVCTGTCA 2.3e-001 3.1e-004 -8.09 0.0 204 488 289 558 0.41803 1.3e-006 243 3 M6350_1.02 MYB CMGTTRD 7.7e0000 1.0e-002 -4.57 0.0 282 494 377 578 0.57085 4.2e-005 246 3 M6357_1.02 NANOG KTTAATGG 1.8e0000 2.5e-003 -6.01 0.0 163 493 242 582 0.33063 1.0e-005 246 3 M6359_1.02 NFE2L1 NATGACD 2.3e-001 3.1e-004 -8.07 0.0 252 494 363 598 0.51012 1.3e-006 246 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 1.3e-001 1.8e-004 -8.62 0.0 251 489 362 590 0.51329 7.4e-007 244 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 2.7e0000 3.6e-003 -5.63 0.0 245 489 320 541 0.50102 1.5e-005 244 3 M6376_1.02 NKX2-5 TYAAGTG 7.4e-002 1.0e-004 -9.21 0.0 168 494 262 597 0.34008 4.1e-007 246 3 M6379_1.02 NKX3-2 ARYTAAGTGGV 2.8e0000 3.7e-003 -5.59 0.0 218 490 314 590 0.44490 1.5e-005 244 3 M6380_1.02 NOBOX HTAATTRSY 6.4e-001 8.7e-004 -7.05 0.0 368 492 474 573 0.74797 3.6e-006 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 7.8e0000 1.0e-002 -4.56 0.0 4 488 15 528 0.00820 4.3e-005 243 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.2e0000 1.6e-003 -6.46 0.0 263 487 354 560 0.54004 6.4e-006 243 3 M6534_1.02 VSX2 WDAGCTAATTA 7.6e-001 1.0e-003 -6.88 0.0 396 490 423 478 0.80816 4.2e-006 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).