# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/FEZF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/FEZF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/FEZF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/FEZF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:41 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/FEZF1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:42 PDT 2018)
#        host: indra
#        when: Thu May 10 16:59:29 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.286 C 0.212 G 0.211 T 0.290


MOTIF HRTAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      HRTAAA     TTTAYD        390        194   3.1e-030   9.6e-026
#           CATAAA     TTTATG        153         49   2.7e-016   8.2e-012
#           AATAAA     TTTATT        147         54   2.5e-013   7.8e-009
#           TATAAA     TTTATA         86         33   1.7e-007   5.3e-003
#           TGTAAA     TTTACA        103         45   2.1e-007   6.5e-003
#           AGTAAA     TTTACT         75         40   4.0e-004   1.2e+001
#           CGTAAA     TTTACG         17          5   8.0e-003   2.5e+002

letter-probability matrix: alength= 4 w= 6 nsites= 631 E= 9.6e-026
0.381933 0.313788 0.000000 0.304279
0.684628 0.000000 0.315372 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AARWGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AARWGGC    GCCWYTT        127         39   5.3e-014   1.6e-009
#          AAATGGC    GCCATTT         43         11   4.5e-006   1.3e-001
#          AAAAGGC    GCCTTTT         43         14   5.3e-005   1.6e+000
#          AAGTGGC    GCCACTT         26          7   5.7e-004   1.7e+001
#          AAGAGGC    GCCTCTT         22          7   3.7e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 137 E= 1.6e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.649635 0.000000 0.350365 0.000000
0.489051 0.000000 0.000000 0.510949
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GATAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GATAA      TTATC        188         88   3.7e-012   1.1e-007
#            GATAA      TTATC        188         88   3.7e-012   1.1e-007

letter-probability matrix: alength= 4 w= 5 nsites= 226 E= 1.1e-007
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGCTS DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CTGCTS     SAGCAG        155         74   1.5e-009   4.4e-005
#           CTGCTC     GAGCAG         76         25   5.7e-008   1.6e-003
#           CTGCTG     CAGCAG        101         54   3.4e-005   9.7e-001

letter-probability matrix: alength= 4 w= 6 nsites= 184 E= 4.4e-005
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.434783 0.565217 0.000000


MOTIF CWGTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CWGTCA     TGACWG        109         52   8.6e-007   2.4e-002
#           CTGTCA     TGACAG         70         32   5.5e-005   1.6e+000
#           CAGTCA     TGACTG         47         25   5.1e-003   1.4e+002

letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 2.4e-002
0.000000 1.000000 0.000000 0.000000
0.394958 0.000000 0.000000 0.605042
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 25.24 seconds