# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/EGR2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/EGR2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/EGR2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/EGR2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:48 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/EGR2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:49 PST 2017) # host: indra # when: Mon Dec 18 16:05:11 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.219 C 0.279 G 0.285 T 0.217 MOTIF CDCCCAC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CDCCCAC GTGGGHG 452 230 3.2e-039 7.5e-035 # CACCCAC GTGGGTG 354 176 1.7e-025 3.9e-021 # CGCCCAC GTGGGCG 70 19 7.8e-009 1.8e-004 # CTCCCAC GTGGGAG 123 63 1.1e-006 2.5e-002 letter-probability matrix: alength= 4 w= 7 nsites= 954 E= 7.5e-035 0.000000 1.000000 0.000000 0.000000 0.730608 0.000000 0.087002 0.182390 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATCYACCY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATCYACCY RGGTRGAT 124 18 3.0e-023 6.6e-019 # ATCCACCC GGGTGGAT 75 9 3.1e-015 7.0e-011 # ATCTACCC GGGTAGAT 44 3 6.0e-011 1.3e-006 # ATCCACCT AGGTGGAT 44 6 8.8e-009 2.0e-004 # ATCTACCT AGGTAGAT 11 1 3.1e-003 6.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 226 E= 6.6e-019 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.721239 0.000000 0.278761 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.694690 0.000000 0.305310 MOTIF TCCATCYA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCCATCYA TRGATGGA 109 26 5.5e-015 1.2e-010 # TCCATCCA TGGATGGA 100 26 7.9e-013 1.7e-008 # TCCATCTA TAGATGGA 21 0 4.0e-007 8.8e-003 letter-probability matrix: alength= 4 w= 8 nsites= 195 E= 1.2e-010 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.897436 0.000000 0.102564 1.000000 0.000000 0.000000 0.000000 MOTIF CCWCCTAC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCWCCTAC GTAGGWGG 41 6 5.3e-008 1.1e-003 # CCTCCTAC GTAGGAGG 19 1 1.8e-005 3.8e-001 # CCACCTAC GTAGGTGG 22 5 6.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.1e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.000000 0.000000 0.454545 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AYARA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AYARA TYTRT 235 149 6.6e-008 1.4e-003 # ATAAA TTTAT 43 16 2.1e-004 4.6e+000 # ACAAA TTTGT 68 36 6.9e-004 1.5e+001 # ACAGA TCTGT 111 78 5.5e-003 1.2e+002 # ATAGA TCTAT 65 41 9.5e-003 2.1e+002 letter-probability matrix: alength= 4 w= 5 nsites= 335 E= 1.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.641791 0.000000 0.358209 1.000000 0.000000 0.000000 0.000000 0.379104 0.000000 0.620896 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGAGGMG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGGAGGMG CKCCTCCT 57 15 1.5e-007 3.0e-003 # AGGAGGAG CTCCTCCT 49 14 3.3e-006 6.6e-002 # AGGAGGCG CGCCTCCT 13 1 8.7e-004 1.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 154 E= 3.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATHCACTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATHCACTC GAGTGDAT 53 13 1.8e-007 3.6e-003 # ATTCACTC GAGTGAAT 19 3 3.9e-004 7.7e+000 # ATCCACTC GAGTGGAT 23 7 2.3e-003 4.7e+001 # ATACACTC GAGTGTAT 14 3 6.1e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 3.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.275362 0.376812 0.000000 0.347826 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTKCCCAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CTKCCCAC GTGGGMAG 50 14 2.0e-006 4.0e-002 # CTGCCCAC GTGGGCAG 28 8 5.0e-004 1.0e+001 # CTTCCCAC GTGGGAAG 24 6 6.3e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 4.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.577465 0.422535 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 34.91 seconds