# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:47 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:48 PST 2017) # host: indra # when: Mon Dec 18 16:06:40 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.280 C 0.216 G 0.221 T 0.284 MOTIF TCYWRGAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TCYWRGAA TTCYWRGA 277 19 2.5e-076 7.9e-072 # TCTAGGAA TTCCTAGA 125 3 1.0e-036 3.3e-032 # TCCTAGAA TTCTAGGA 103 2 1.4e-030 4.3e-026 # TCCAGGAA TTCCTGGA 83 5 9.0e-021 2.9e-016 # TCCTGGAA TTCCAGGA 67 4 7.7e-017 2.5e-012 # TCTAAGAA TTCTTAGA 29 3 9.7e-007 3.1e-002 # TCCAAGAA TTCTTGGA 26 3 6.1e-006 2.0e-001 # TCTTGGAA TTCCAAGA 23 2 8.1e-006 2.6e-001 # TCTTAGAA TTCTAAGA 22 2 1.5e-005 4.9e-001 letter-probability matrix: alength= 4 w= 8 nsites= 312 E= 7.9e-072 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.557692 0.000000 0.442308 0.612179 0.000000 0.000000 0.387821 0.336538 0.000000 0.663462 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTVGAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CTVGAAA TTTCBAG 100 21 4.5e-015 1.4e-010 # CTAGAAA TTTCTAG 51 8 2.0e-009 6.4e-005 # CTGGAAA TTTCCAG 37 10 3.6e-005 1.1e+000 # CTCGAAA TTTCGAG 15 3 3.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 104 E= 1.4e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.144231 0.355769 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTAAACA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST RTAAACA TGTTTAY 79 16 2.9e-012 9.1e-008 # ATAAACA TGTTTAT 51 12 1.9e-007 6.0e-003 # GTAAACA TGTTTAC 31 4 1.3e-006 4.0e-002 letter-probability matrix: alength= 4 w= 7 nsites= 84 E= 9.1e-008 0.630952 0.000000 0.369048 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF MTGAGTCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST MTGAGTCA TGACTCAK 37 3 6.0e-009 1.9e-004 # ATGAGTCA TGACTCAT 23 3 3.7e-005 1.2e+000 # CTGAGTCA TGACTCAG 14 0 5.7e-005 1.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.9e-004 0.575000 0.425000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRAGGAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CRAGGAA TTCCTYG 46 9 1.2e-007 3.7e-003 # CGAGGAA TTCCTCG 24 5 2.4e-004 7.3e+000 # CAAGGAA TTCCTTG 23 5 4.0e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 47 E= 3.7e-003 0.000000 1.000000 0.000000 0.000000 0.489362 0.000000 0.510638 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 33.87 seconds