# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 2999 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Jan 01 19:09:15 PST 2018) # negatives: 2999 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL6B.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Jan 01 19:09:15 PST 2018) # host: kali # when: Mon Jan 01 19:32:15 PST 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.285 C 0.212 G 0.214 T 0.289 MOTIF TCBARGAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TCBARGAA TTCYTVGA 1001 53 1.2e-267 4.9e-263 # TCTAGGAA TTCCTAGA 422 8 2.1e-120 8.9e-116 # TCCAGGAA TTCCTGGA 318 10 1.6e-084 6.5e-080 # TCCAAGAA TTCTTGGA 126 16 4.0e-023 1.7e-018 # TCTAAGAA TTCTTAGA 112 17 5.7e-019 2.4e-014 # TCGAGGAA TTCCTCGA 58 0 2.6e-018 1.1e-013 # TCGAAGAA TTCTTCGA 18 2 2.0e-004 8.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 1098 E= 4.9e-263 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.422587 0.069217 0.508197 1.000000 0.000000 0.000000 0.000000 0.236794 0.000000 0.763206 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RCTTTCYA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RCTTTCYA TRGAAAGY 331 50 2.7e-055 1.1e-050 # GCTTTCTA TAGAAAGC 155 9 1.4e-036 5.8e-032 # GCTTTCCA TGGAAAGC 77 9 4.6e-015 1.9e-010 # ACTTTCTA TAGAAAGT 70 18 8.3e-009 3.4e-004 # ACTTTCCA TGGAAAGT 39 14 3.8e-004 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 346 E= 1.1e-050 0.317919 0.000000 0.682081 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.341040 0.000000 0.658960 1.000000 0.000000 0.000000 0.000000 MOTIF HMATAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST HMATAAA TTTATKD 892 428 2.8e-048 1.2e-043 # CAATAAA TTTATTG 215 72 8.8e-019 3.7e-014 # AAATAAA TTTATTT 281 124 2.3e-016 9.4e-012 # CCATAAA TTTATGG 150 44 1.9e-015 7.7e-011 # TCATAAA TTTATGA 190 72 2.8e-014 1.2e-009 # TAATAAA TTTATTA 135 75 1.5e-005 6.3e-001 # ACATAAA TTTATGT 137 79 3.6e-005 1.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 1146 E= 1.2e-043 0.378709 0.330716 0.000000 0.290576 0.565445 0.434555 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGACTCAB DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 196 38 4.4e-028 1.8e-023 # TGACTCAT ATGAGTCA 92 10 2.7e-018 1.1e-013 # TGACTCAC GTGAGTCA 53 13 3.2e-007 1.3e-002 # TGACTCAG CTGAGTCA 54 16 2.6e-006 1.1e-001 letter-probability matrix: alength= 4 w= 8 nsites= 213 E= 1.8e-023 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.258216 0.276995 0.464789 MOTIF CCWRGAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCWRGAA TTCYWGG 385 158 3.1e-025 1.3e-020 # CCTAGAA TTCTAGG 140 38 1.3e-015 5.3e-011 # CCAGGAA TTCCTGG 94 27 2.4e-010 1.0e-005 # CCAAGAA TTCTTGG 81 47 1.5e-003 6.3e+001 # CCTGGAA TTCCAGG 83 50 2.4e-003 9.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 411 E= 1.3e-020 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440389 0.000000 0.000000 0.559611 0.559611 0.000000 0.440389 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RYAAACA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST RYAAACA TGTTTRY 457 223 5.1e-022 2.1e-017 # GTAAACA TGTTTAC 135 45 3.0e-012 1.2e-007 # ACAAACA TGTTTGT 169 79 2.7e-009 1.1e-004 # ATAAACA TGTTTAT 94 44 1.0e-005 4.1e-001 # GCAAACA TGTTTGC 93 61 5.6e-003 2.3e+002 letter-probability matrix: alength= 4 w= 7 nsites= 496 E= 2.1e-017 0.544355 0.000000 0.455645 0.000000 0.000000 0.534274 0.000000 0.465726 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTCCTRAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TTCCTRAA TTYAGGAA 145 33 1.0e-018 4.2e-014 # TTCCTGAA TTCAGGAA 86 18 2.8e-012 1.1e-007 # TTCCTAAA TTTAGGAA 61 16 1.0e-007 4.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 4.2e-014 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.409396 0.000000 0.590604 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAACCACW DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AAACCACW WGTGGTTT 82 14 2.5e-013 1.0e-008 # AAACCACA TGTGGTTT 61 7 2.9e-012 1.2e-007 # AAACCACT AGTGGTTT 23 7 2.6e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 1.0e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.729412 0.000000 0.000000 0.270588 MOTIF GATKAC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GATKAC GTMATC 333 179 5.4e-013 2.2e-008 # GATGAC GTCATC 185 93 8.7e-009 3.5e-004 # GATTAC GTAATC 162 92 4.3e-006 1.8e-001 letter-probability matrix: alength= 4 w= 6 nsites= 363 E= 2.2e-008 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.531680 0.468320 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTAKAAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CTAKAAA TTTMTAG 180 80 1.1e-010 4.3e-006 # CTATAAA TTTATAG 114 41 1.2e-009 4.9e-005 # CTAGAAA TTTCTAG 69 40 3.3e-003 1.3e+002 letter-probability matrix: alength= 4 w= 7 nsites= 190 E= 4.3e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.368421 0.631579 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAWAACA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GAWAACA TGTTWTC 203 96 1.1e-010 4.3e-006 # GAAAACA TGTTTTC 143 67 5.1e-008 2.1e-003 # GATAACA TGTTATC 62 29 3.2e-004 1.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 211 E= 4.3e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.706161 0.000000 0.000000 0.293839 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATTYC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CATTYC GRAATG 439 287 1.0e-009 4.1e-005 # CATTTC GAAATG 286 177 7.8e-008 3.1e-003 # CATTCC GGAATG 166 115 1.1e-003 4.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 481 E= 4.1e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.370062 0.000000 0.629938 0.000000 1.000000 0.000000 0.000000 MOTIF CCTGGCAC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CCTGGCAC GTGCCAGG 28 0 3.5e-009 1.4e-004 # CCTGGCAC GTGCCAGG 28 0 3.5e-009 1.4e-004 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACDG DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CACDG CHGTG 1302 1088 9.5e-009 3.8e-004 # CACAG CTGTG 746 608 1.1e-005 4.6e-001 # CACTG CAGTG 652 530 4.2e-005 1.7e+000 # CACGG CCGTG 163 119 4.3e-003 1.7e+002 letter-probability matrix: alength= 4 w= 5 nsites= 1720 E= 3.8e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.491860 0.000000 0.099419 0.408721 0.000000 0.000000 1.000000 0.000000 MOTIF CACGTGM DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CACGTGM KCACGTG 45 7 3.1e-008 1.2e-003 # CACGTGA TCACGTG 26 3 7.3e-006 2.9e-001 # CACGTGC GCACGTG 24 5 2.7e-004 1.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 MOTIF ACACACRC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST ACACACRC GYGTGTGT 104 39 1.8e-008 7.0e-004 # ACACACAC GTGTGTGT 96 38 2.1e-007 8.4e-003 # ACACACGC GCGTGTGT 17 2 3.6e-004 1.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 265 E= 7.0e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.947170 0.000000 0.052830 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCTAGAGW DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CCTAGAGW WCTCTAGG 59 14 4.3e-008 1.7e-003 # CCTAGAGA TCTCTAGG 40 8 1.5e-006 5.9e-002 # CCTAGAGT ACTCTAGG 19 6 7.2e-003 2.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.7e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.661290 0.000000 0.000000 0.338710 MOTIF CCCCRCC DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CCCCRCC GGYGGGG 104 44 3.3e-007 1.3e-002 # CCCCACC GGTGGGG 64 26 3.4e-005 1.3e+000 # CCCCGCC GGCGGGG 42 19 2.1e-003 8.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 107 E= 1.3e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.607477 0.000000 0.392523 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCCTYGAA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST TCCTYGAA TTCRAGGA 59 17 6.0e-007 2.3e-002 # TCCTTGAA TTCAAGGA 47 16 5.4e-005 2.1e+000 # TCCTCGAA TTCGAGGA 12 1 1.7e-003 6.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 2.3e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.203390 0.000000 0.796610 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 432.96 seconds