# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:51:49 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:51:50 PST 2017)
#        host: indra
#        when: Mon Dec 18 16:08:09 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.209 C 0.292 G 0.286 T 0.213


MOTIF GAGGTYA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GAGGTYA    TRACCTC        115         19   4.2e-020   1.3e-015
#          GAGGTCA    TGACCTC        103         18   2.1e-017   6.6e-013
#          GAGGTTA    TAACCTC         16          1   1.3e-004   4.0e+000

letter-probability matrix: alength= 4 w= 7 nsites= 182 E= 1.3e-015
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.857143 0.000000 0.142857
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGTCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AAGGTCR    YGACCTT         53          8   6.2e-010   2.0e-005
#          AAGGTCA    TGACCTT         44          7   3.4e-008   1.1e-003
#          AAGGTCG    CGACCTT         11          1   3.1e-003   9.6e+001

letter-probability matrix: alength= 4 w= 7 nsites= 61 E= 2.0e-005
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.819672 0.000000 0.180328 0.000000


MOTIF GGATTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGATTA     TAATCC         40          5   2.3e-008   7.4e-004
#           GGATTA     TAATCC         40          5   2.3e-008   7.4e-004

letter-probability matrix: alength= 4 w= 6 nsites= 41 E= 7.4e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACCCYW DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACCCYW   WRGGGTCA         63         18   1.1e-007   3.3e-003
#         TGACCCCA   TGGGGTCA         28          8   5.0e-004   1.6e+001
#         TGACCCCT   AGGGGTCA         25          7   9.2e-004   2.9e+001
#         TGACCCTA   TAGGGTCA         11          1   3.1e-003   9.6e+001
#         TGACCCTT   AAGGGTCA         14          3   6.1e-003   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 3.3e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.651163 0.000000 0.348837
0.546512 0.000000 0.000000 0.453488


# Stopping reason: E-value threshold exceeded
#    Running time: 26.24 seconds