Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
RGRBNRRGGTCAGRGGTCAGGGKBMVGGGS 30 GGGGTGGGGTCAGAGGTCAGGGGGCGGGGG
KTGTGTKTKTKTKTDTDTDTGT 22 TTGTGTTTTTGTGTGTGTTTGT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG 33 CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
GRGGTCAGRGG 11 GAGGTCAGGGG
AWKNWWWTDWHAVNWNHWTNDTWWWTWWTWA 31 AATCTAATTTAACATTAATTTTAATTTTTAA
AGAGRGWGAGAGAGAGRKAGRG 22 AGAGAGAGAGAGAGAGAGAGAG
ACCCTGACCCNDAMCC 16 ACCCTGACCCTGACCC
AGSHGKAGKGRGAGGTCACWSWGAGGTYAM 30 AGGTGGAGGGAGAGGTCACACAGAGGTCAC
ATGTTGGCCAGGCTGGTCTCGA 22 ATGTTGGCCAGGCTGGTCTCGA
GGSCGGGSGCGGBSGCKCMSGC 22 GGCCGGGCGCGGGGGCTCAGGC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.212 C 0.288 G 0.288 T 0.212


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 150877002 150877034 3.68e-20 1.62e-14 CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr5 - 181218569 181218601 6.38e-20 1.62e-14 CAGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr12 + 123383557 123383589 9.07e-20 1.62e-14 ccgcctcagcctcccaaagtgctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr11 - 65472577 65472609 1.18e-19 1.62e-14 CTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 - 43322298 43322330 1.45e-19 1.62e-14 CCGCCTTGGCCTCCCAAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 28757624 28757656 3e-19 2.36e-14 ccgcctcggccttccaaagtgctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr2 + 28894225 28894257 3e-19 2.36e-14 ccgcctcggcctcccaaagtgctaggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr10 - 68527754 68527786 3.36e-19 2.36e-14 CCGCCTGGGCCTCCCAAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 38518668 38518700 4.83e-19 3.01e-14 CCGCCTCGGCCTCCCATAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr21 - 43857636 43857668 8.91e-19 5e-14 CCACCTCAGCCTCCCAAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 55399411 55399443 1.61e-18 8.23e-14 ccgccttggcctcccaaagtgctaggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr4 + 123508778 123508810 9.26e-18 4.33e-13 caggcgcggcctcccaaagtgctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 48961331 48961363 3.61e-17 1.56e-12 ccgcctcagcctctcaaagtgctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 63843374 63843406 4.11e-17 1.65e-12 CCGCCTCAGCCTCCCAAAGCGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr4 + 123508748 123508780 5.85e-17 2.19e-12 ctgccccggcctcccaaagtgctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 - 31796200 31796232 6.71e-17 2.3e-12 CCACCTCGGCCTCCCAAAGTGCTGGGATTATAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 38851638 38851670 6.98e-17 2.3e-12 CCGCCTTGGCCTCCCCAAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr21 - 43857471 43857503 7.49e-17 2.33e-12 CTGCCTCGGCCTCCCAAGTAGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 44886460 44886492 1.95e-16 5.77e-12 CTGCCTTGGCCTCCCAAAGTGCTGGGATTATAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 55399276 55399308 6.28e-16 1.76e-11 ctgcctcagccttccaagtagctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 167658675 167658707 1.3e-15 3.47e-11 cctcctcggcctcccaaagtgctgggattacaa
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 34218248 34218280 2.11e-15 5.39e-11 ccgccccggcctcccaaagtgctggggttacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 8389719 8389751 2.59e-15 6.31e-11 cagcctcggcctcccaaagtcctggaattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 150877136 150877168 2.84e-15 6.64e-11 CTGCCTCAGCCTCCCAAGAAGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr10 - 68527848 68527880 3.17e-15 7.11e-11 CCGCCTCAGCCTCCCAAAGGGCTGGGATTATAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr2 + 28894367 28894399 4.65e-15 1e-10 ccacttcggcctcccaaagtgctgtgattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 1002267 1002299 5.43e-15 1.1e-10 ctgcctcggcctcccaacgtgctgggactacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 - 31796298 31796330 5.5e-15 1.1e-10 CCGCCCTGGCCTCCCAGAGTGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 75905325 75905357 6.1e-15 1.18e-10 CCGCCTTGGCCTCCCAAAGTGCTGGGATTCCCG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr21 - 43857770 43857802 1.05e-14 1.94e-10 CTGCCTCAGCCTCCTGAGTAGCTAGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27602479 27602511 1.07e-14 1.94e-10 ctgtcttggcctcccaaagtgctgagattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 34175340 34175372 1.26e-14 2.21e-10 ctgcctcagcctcctgagtagctgggattactg
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr14 - 49586600 49586632 3.55e-14 6.04e-10 CAGCCTCAGCCTCCCGAGTAGCTGGGACTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 55653539 55653571 3.66e-14 6.04e-10 CTGCCTCAGCCTTCCAAGTAGCTGGGACTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 43322029 43322061 3.8e-14 6.08e-10 ccaccgcagcctcccaaaatgctgggattacac
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 167658535 167658567 1.26e-13 1.96e-09 ctgcctcagcctcctgagtaactgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 11089972 11090004 2.91e-13 4.41e-09 ctctctcagcctcccgaatagctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 34175476 34175508 3.25e-13 4.8e-09 ctgcctcagcctcccagaatgccgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27672105 27672137 3.94e-13 5.67e-09 ctgcctcaggctcccaagtagctgggactacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr22 - 40711537 40711569 4.63e-13 6.5e-09 CTGCCTCAGCCTCCCAAGTAGCTGGGACCACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 40420541 40420573 1.28e-12 1.75e-08 CCGCGTCAGCCTCCCAATTAGCTGGGGTTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 + 81711772 81711804 3.18e-12 4.25e-08 ctgcctcagcttcctgagtaactgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr11 - 68459838 68459870 3.51e-12 4.58e-08 CTGTCTCAGCCTCCCGTGTAGCTGGGATTACAA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 28757490 28757522 7.49e-12 9.55e-08 ctgactcagccttttgagtagctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr4 + 123508673 123508705 9.66e-12 1.2e-07 ttgcctcagcctccccagtagctgggactacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27672242 27672274 4.55e-11 5.55e-07 ccgtttcggcctccccaagtgcggggattgcag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 17624364 17624396 1.26e-10 1.5e-06 cgcctcgagcctcccaaagtgctgggattgcag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27602344 27602376 1.38e-10 1.61e-06 ctgcctcagcctctcaagtaactgggattacga
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr3 - 194350730 194350762 3.58e-10 4.1e-06 CCCACTCAGCCTGCTGAGTAGCTGGGATTACAA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr5 - 69521509 69521541 4.01e-10 4.49e-06 CTGTCTCATCCTCCCGAGTAGCTGGGACTAGAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 32972521 32972553 1.71e-09 1.88e-05 acgcctcagccttgcccaatgttgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr9 - 35657657 35657689 2.68e-08 0.000289 TCACCTCAGGCTCCCAAGTAGTTGGGACCGCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 51165904 51165936 2.3e-07 0.00244 AAGCCTCGGCCTCCCAAGGGGCCTCGATCTCAC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 11090095 11090127 3e-07 0.00312 caggtgatctgcccaaaagtgctgggattacag
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr13 - 114281153 114281185 4.68e-07 0.00477 CTGCCTCAGCCTCCTGAGTGGCTGGGACCTACA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr12 - 12267356 12267388 2.66e-06 0.0267 CGGCGGCGGCCGCACAAAGAGCGGGGCAGACGG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 228452422 228452454 3.28e-06 0.0322 CCAGGTTGGCCTGCTGACTTGCTGTGACTCCCA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 + 81711740 81711772 4.22e-06 0.0408 caacctctgcctcccggattcaagcgattctac
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr7 + 149625127 149625159 4.55e-06 0.0433 GCACTTCTGCCGCCCGAGGTCCTGGGCCTGGAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr3 + 128726744 128726776 5.37e-06 0.0502 CCGCCGTGCCCACCCGGCGGGCATGGGTCACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr11 - 120347411 120347443 7.21e-06 0.0663 AAGACTTGGAGCCATTAAGAGCTGGGATTCCTT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 228781571 228781603 7.94e-06 0.0719 CCTGCTTAATCTCCTTACTTGTGGGGAATTCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 38518833 38518865 8.57e-06 0.0763 CAACCTCTGCCTCCCGAGTTCAAGCGATTTTCC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 45321300 45321332 9.58e-06 0.084 CTCCCTGGCCTCTCCATAGACCTCAGCTAACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 37594653 37594685 1.16e-05 0.1 AAAAGTAGTTCTTGTATGGTGCTGGGAATACCG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr21 - 43857802 43857834 1.23e-05 0.105 CAACCTCTGCCTCCCAGATTCAAGTGATTCTCC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27672073 27672105 1.27e-05 0.106 caaccttcgcctcccaggttcaagcgattcttc
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 42676899 42676931 1.29e-05 0.106 CGGACACGACCCTCCCTGGAGCTTGGACAACTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 45643265 45643297 1.4e-05 0.113 CCGCCAGGGGCCGCCGAAGCTCTGTCCTTGCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr10 - 68527714 68527746 1.42e-05 0.114 CCACCGCGCCCGGCCAGGTTGTGGGTTTTAATG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr5 + 139518207 139518239 1.52e-05 0.12 GCGGCAGGTCCTGCCTCGGACCTGGGACCACTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 55653849 55653881 1.65e-05 0.125 CAGGCGCGGCAGACGGATCATCTGGCATTACTT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 9943553 9943585 1.67e-05 0.125 CCATCCTGGACTCCCCTATATCTAGGACAAAAA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 155002009 155002041 1.67e-05 0.125 ATACCCTTCCCTCCTGAGGTCCTGACCCTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 241848062 241848094 1.67e-05 0.125 CGTCCTGAGCTCTCCGTCTCGCTGGGTAGACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 - 33295818 33295850 1.84e-05 0.136 GTTCCTTGGCCACCTGAGATCCTCAGATCCCTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 38315722 38315754 1.91e-05 0.14 AACCCTGAGGTGTGCACAGCGCTGGGATGCCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 1239869 1239901 2.31e-05 0.166 CAGCAGGGTCGGCCTGCGGTTCTGGGAAGTCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 28648890 28648922 2.4e-05 0.17 CCCACTTCCACTTCTTAAGTGCTAGGATACAGG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 150877168 150877200 2.42e-05 0.17 CAACCTCTGCCTCCCAGGTTCAAGCGATTCTCC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr12 - 31073937 31073969 2.61e-05 0.181 CCTTCTTCGCCGGCAGAATTGCTACGCTGAAAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 1445576 1445608 2.78e-05 0.19 tcacgtcagcttcccaagggcctggattttgtt
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr11 - 65472537 65472569 2.99e-05 0.201 CCACCGTGCCCAGCCAATTTGTTGTTTTTAAAT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 1262385 1262417 3.01e-05 0.201 GTAACTCCCATTCCCATGGTGCTGGGAGAGGAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 4967469 4967501 3.07e-05 0.202 CGACCCTGGCCTTCCGCAGTCCTTGTTTCCCAT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 - 24403030 24403062 3.28e-05 0.214 CTGCGCAGGCATTCCATGGTGCTGGAGCAAGAA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 38518803 38518835 3.31e-05 0.214 TCCTGCCTCAGCCCCGAGTAGCTGGGATTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 36140125 36140157 3.49e-05 0.223 CCGCCGCACACGTCCGGAGTTCTGGGAGTCGGT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 + 164223436 164223468 3.67e-05 0.231 gaccctattcaataaatggtgctgggataactg
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr21 - 28993033 28993065 3.93e-05 0.245 AATGCTTGGCTTCCTATTGGCCAGGAATGACAT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr4 - 118327953 118327985 3.99e-05 0.246 CTACATCATGCTTTTCTGGAGTAGTGGTTACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr20 - 38033886 38033918 4.03e-05 0.246 CGGCCTGGGCCGCCCAGTGCGGCGGGAAGAGCG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr21 - 28992719 28992751 4.1e-05 0.247 CTGGCTCGGCCGACCCGGGAGCCTCGCTTCGAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr16 + 89717786 89717818 4.57e-05 0.27 GCTCACCGGCTCCCTAGGGAGCTGGGGCAACTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27602521 27602553 4.59e-05 0.27 acggcacccagtcCCCCAATCCTAGGATTAAAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 27602312 27602344 4.62e-05 0.27 caacctccgcctcccgggtttaagcgattctcc
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr1 - 148522547 148522579 4.66e-05 0.27 CCGCCACAGCCTCACACGCTTCACCCTTTACAC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr10 - 78029460 78029492 4.91e-05 0.281 CAGAAGCAGCCCCAGGAGGTGCTGGGGGCATCG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 3929852 3929884 5.17e-05 0.293 CAGGATTGGGTTCCAGGGGTCAGGGGAGTCCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 + 8222939 8222971 5.65e-05 0.317 CGTGCCAGGCTTGCTGTAGTGCTGGGTCCACTA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr5 - 59303613 59303645 6.28e-05 0.349 TAACCTTTTCAACAAATGGTGCTGAGATAATTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 + 45321276 45321308 6.41e-05 0.353 CAGCTTGGACCTGCCCTACTGCTGCTGTTAGCT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr16 - 89717869 89717901 6.56e-05 0.357 AGGTCGGGGGAGCCCCTGGACGTGGGATCACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 70270469 70270501 6.71e-05 0.361 CGAGCTCAGCCATGCATAGACCTGCCACCAAAA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 + 17823851 17823883 6.75e-05 0.361 ACCCCGCGGCGCTGAATGGGGTTGGGGTTACTA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 32972175 32972207 7e-05 0.362 CGCCCTCCGCCTCCCGCAGCGCCGGATAGGCTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 4967239 4967271 7.01e-05 0.362 CCACCCCAGCCTGCGAATTCCCATTGGTTGCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr22 - 46762673 46762705 7.05e-05 0.362 CCGGGTGGCCCCTCACTGCTCCCGGGACTCCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chrX - 73850837 73850869 7.05e-05 0.362 CCAGTGCTGCCTCTTGCAGTGCTGGATATCTGG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 + 47649964 47649996 7.11e-05 0.362 ctccctccGCCTCCCGAGCACCAGCGCGCTCTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr16 + 30787263 30787295 7.26e-05 0.366 AACCCTTTGCCTCCCGCAGCCTGGGGAAAAAAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr5 - 140647652 140647684 7.3e-05 0.366 CTGCCTCATGCAGCCTATGGGCTAGGCTTTAGG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 28757458 28757490 7.37e-05 0.366 caacctccgcctcccgggttcaaacgattctcc
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 76737744 76737776 7.65e-05 0.377 ACGCAGCGGAGTCTGAGGGGGCCGGGGTCACAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 30426150 30426182 7.8e-05 0.381 CCAGGCCTGCATTATGAAAAGCTTGAGTTACAA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr8 - 125430228 125430260 7.98e-05 0.384 CAGGCCGGGCTGTGTAAACAGTTGGGAAGCCGG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr6 + 33204618 33204650 8e-05 0.384 TGCGCTGGGATTGGCTTAGTGCTGGGATTCCCA
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 50049157 50049189 8.21e-05 0.39 GCCCCTTGCCCTCTGACCTTTCTAGGGTGGCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr10 + 75235297 75235329 8.35e-05 0.393 CCGCGCCAGGTTGGCCAAGAGCTGGGCCTGCTC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 40425606 40425638 8.52e-05 0.398 CCGCCGCCGCTTCGGGAGGAGCCGCCTCCACTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 + 17624420 17624452 8.65e-05 0.401 ATGTCTATGCCTTCCGTGGCTCAAGGATAACCT
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr17 - 78187011 78187043 9.22e-05 0.424 GCGGGACGGCCTTGGAGAGTACTCGGGTTCGTG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr22 - 46762815 46762847 9.56e-05 0.433 CTGCCCGGGAGCTTGCTGTTGCTGCGCTTCCAG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr19 - 58519816 58519848 9.56e-05 0.433 CGACCGCAGGCCTCCGTTCCGCCGGGGTAACGG
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG MEME-3 chr11 - 9314495 9314527 9.85e-05 0.442 GCGCTTCGGCGTAGTAAGGAGCCTGCAACAGAG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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