# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:26 PDT 2018) # host: kadru # when: Mon Jun 11 07:51:37 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.230 C 0.268 G 0.262 T 0.241 MOTIF RAGGTCA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RAGGTCA TGACCTY 147 31 2.0e-022 6.2e-018 # GAGGTCA TGACCTC 117 18 3.0e-021 9.0e-017 # AAGGTCA TGACCTT 57 13 2.2e-008 6.7e-004 letter-probability matrix: alength= 4 w= 7 nsites= 234 E= 6.2e-018 0.303419 0.000000 0.696581 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGTCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGTCA TGACC 247 138 9.6e-012 2.9e-007 # GGTCA TGACC 247 138 9.6e-012 2.9e-007 letter-probability matrix: alength= 4 w= 5 nsites= 514 E= 2.9e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGATTA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGATTA TAATCC 60 11 4.6e-010 1.4e-005 # GGATTA TAATCC 60 11 4.6e-010 1.4e-005 letter-probability matrix: alength= 4 w= 6 nsites= 63 E= 1.4e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTAGAGAY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GTAGAGAY RTCTCTAC 29 0 1.3e-009 3.9e-005 # GTAGAGAC GTCTCTAC 21 0 4.0e-007 1.2e-002 # GTAGAGAT ATCTCTAC 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.9e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.724138 0.000000 0.275862 MOTIF AAWACAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAWACAAA TTTGTWTT 43 5 3.7e-009 1.1e-004 # AATACAAA TTTGTATT 27 2 6.3e-007 1.8e-002 # AAAACAAA TTTGTTTT 16 3 2.1e-003 6.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.1e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.377778 0.000000 0.000000 0.622222 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGGCYGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GAGGCYGA TCRGCCTC 35 3 2.2e-008 6.4e-004 # GAGGCTGA TCAGCCTC 20 2 5.3e-005 1.6e+000 # GAGGCCGA TCGGCCTC 15 1 2.4e-004 7.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 6.4e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRAGACCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CRAGACCA TGGTCTYG 28 1 4.1e-008 1.2e-003 # CAAGACCA TGGTCTTG 16 1 1.3e-004 3.7e+000 # CGAGACCA TGGTCTCG 12 0 2.3e-004 6.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 34.81 seconds