# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:25 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11B.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:26 PDT 2018)
#        host: kadru
#        when: Mon Jun 11 07:55:48 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.202 C 0.299 G 0.298 T 0.201


MOTIF GWGGTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GWGGTCA    TGACCWC         77         17   2.7e-011   8.6e-007
#          GAGGTCA    TGACCTC         60         12   1.5e-009   4.7e-005
#          GTGGTCA    TGACCAC         18          5   5.0e-003   1.6e+002

letter-probability matrix: alength= 4 w= 7 nsites= 93 E= 8.6e-007
0.000000 0.000000 1.000000 0.000000
0.795699 0.000000 0.000000 0.204301
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTTATKR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TTTATKR    YMATAAA         57          9   2.2e-010   6.9e-006
#          TTTATGA    TCATAAA         21          3   1.2e-004   3.9e+000
#          TTTATGG    CCATAAA         14          1   4.6e-004   1.5e+001
#          TTTATTA    TAATAAA         15          2   1.1e-003   3.5e+001
#          TTTATTG    CAATAAA         15          3   3.6e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 69 E= 6.9e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.565217 0.434783
0.550725 0.000000 0.449275 0.000000


MOTIF CMGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CMGGAA     TTCCKG        104         43   4.4e-008   1.4e-003
#           CCGGAA     TTCCGG         59         16   1.4e-007   4.3e-003
#           CAGGAA     TTCCTG         51         29   7.3e-003   2.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 1.4e-003
0.000000 1.000000 0.000000 0.000000
0.436975 0.563025 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTSAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGTSAC     GTSACC         99         45   9.9e-007   3.1e-002
#           GGTCAC     GTGACC         69         31   4.7e-005   1.5e+000
#           GGTGAC     GTCACC         56         24   1.4e-004   4.5e+000

letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 3.1e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.571429 0.428571 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 23.40 seconds