Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
YYTGACCYCTGACCYC 16 CCTGACCTCTGACCTC
CGCCTYGGCCTCCCAAAGTGCTGGGATTACA 31 CGCCTCGGCCTCCCAAAGTGCTGGGATTACA
RTGACTCAY 9 GTGACTCAT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.240 C 0.260 G 0.260 T 0.240

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
RTGACTCAY MEME-3 chr18 + 3409330 3409338 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr1 - 7301033 7301041 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr19 + 16279459 16279467 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr2 - 25078674 25078682 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr21 + 26796166 26796174 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr6 + 27633374 27633382 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr1 - 28373705 28373713 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr12 - 31078966 31078974 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr21 + 36210236 36210244 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr1 + 38786764 38786772 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr19 + 39033201 39033209 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr1 + 41870269 41870277 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr1 - 41870329 41870337 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr21 + 43857625 43857633 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr20 - 46085306 46085314 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr19 - 47253586 47253594 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr19 + 50896817 50896825 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr1 + 61692624 61692632 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr15 + 72107277 72107285 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr9 - 86741522 86741530 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr13 - 87124147 87124155 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr6 + 90369176 90369184 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr5 + 99020371 99020379 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr7 - 116218491 116218499 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr12 + 122368671 122368679 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr6 - 124488142 124488150 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr7 + 133492274 133492282 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr7 + 150360267 150360275 3.64e-06 0.0593 gtgactcat
RTGACTCAY MEME-3 chr1 - 167658710 167658718 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr1 - 175471147 175471155 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr3 + 182365380 182365388 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr1 - 183032667 183032675 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr1 + 198763597 198763605 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr2 - 200786601 200786609 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr1 - 232678718 232678726 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr1 + 235504968 235504976 3.64e-06 0.0593 GTGACTCAT
RTGACTCAY MEME-3 chr16 - 10739005 10739013 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr19 + 16279340 16279348 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr22 - 24727305 24727313 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr17 + 27353806 27353814 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr21 + 29217874 29217882 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr11 + 36149836 36149844 7.01e-06 0.0673 atgactcat
RTGACTCAY MEME-3 chr11 + 36149871 36149879 7.01e-06 0.0673 atgactcat
RTGACTCAY MEME-3 chr11 + 36149887 36149895 7.01e-06 0.0673 atgactcat
RTGACTCAY MEME-3 chr11 + 36149894 36149902 7.01e-06 0.0673 atgactcat
RTGACTCAY MEME-3 chr19 - 38544178 38544186 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr22 - 40711701 40711709 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr17 - 45321083 45321091 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr18 - 50870392 50870400 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr5 - 67015802 67015810 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr17 + 67978758 67978766 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr17 - 71438962 71438970 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr16 + 74578189 74578197 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr1 + 85298105 85298113 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr10 + 85642890 85642898 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr6 + 138088398 138088406 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr6 + 149233599 149233607 7.01e-06 0.0673 atgaCTCAT
RTGACTCAY MEME-3 chr1 + 151495015 151495023 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr4 + 185913002 185913010 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr1 + 205734578 205734586 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr1 + 205734588 205734596 7.01e-06 0.0673 ATGACTCAT
RTGACTCAY MEME-3 chr8 + 631141 631149 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr10 + 3314863 3314871 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr1 - 16727577 16727585 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr10 - 17228524 17228532 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr6 - 30907799 30907807 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr20 - 34391032 34391040 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chrX + 38061524 38061532 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr6 + 43322287 43322295 1.1e-05 0.0697 gtgactcac
RTGACTCAY MEME-3 chr22 + 49970914 49970922 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr18 - 50870349 50870357 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr15 + 58332340 58332348 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr15 - 65832847 65832855 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr2 + 66364580 66364588 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr10 + 68153861 68153869 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr7 + 74079574 74079582 1.1e-05 0.0697 gtgactcac
RTGACTCAY MEME-3 chr17 - 77233841 77233849 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr6 + 82260495 82260503 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr3 + 100003068 100003076 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr13 - 100364047 100364055 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr14 + 101073440 101073448 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr7 + 101138631 101138639 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr7 + 101138650 101138658 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr8 - 125430281 125430289 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr5 + 125485308 125485316 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr11 + 129143526 129143534 1.1e-05 0.0697 gtgactcac
RTGACTCAY MEME-3 chr5 + 136730206 136730214 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr6 - 137853733 137853741 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr1 + 153566692 153566700 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr1 - 154974212 154974220 1.1e-05 0.0697 GTGACTCAC
RTGACTCAY MEME-3 chr1 + 183060532 183060540 1.1e-05 0.0697 gtgactcac
RTGACTCAY MEME-3 chr1 + 211676082 211676090 1.1e-05 0.0697 gtgactcac
RTGACTCAY MEME-3 chr8 + 631062 631070 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr16 - 15590993 15591001 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr22 - 19984513 19984521 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr12 - 30599935 30599943 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chrX - 38061512 38061520 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr20 + 44362486 44362494 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr20 + 50166198 50166206 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr12 - 71626962 71626970 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr15 - 71747697 71747705 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr10 - 72320911 72320919 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr7 - 111093052 111093060 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr6 + 154853040 154853048 1.46e-05 0.0799 ctgactcat
RTGACTCAY MEME-3 chr6 + 158040584 158040592 1.46e-05 0.0799 CTGACTCAT
RTGACTCAY MEME-3 chr1 + 183060623 183060631 1.46e-05 0.0799 ctgactcat
RTGACTCAY MEME-3 chr1 + 228452715 228452723 1.46e-05 0.0799 ctgactcat
RTGACTCAY MEME-3 chr4 + 1043761 1043769 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr17 + 1115266 1115274 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr3 - 9977201 9977209 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr12 - 10212366 10212374 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr19 - 11344629 11344637 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr19 + 13847110 13847118 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr1 - 16164313 16164321 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr22 + 27213003 27213011 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr8 - 28118640 28118648 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr1 - 28885113 28885121 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr16 - 30381610 30381618 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr20 - 31572897 31572905 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr19 - 36140063 36140071 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr19 - 40920956 40920964 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr19 - 40921195 40921203 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr10 + 44752990 44752998 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr21 + 45318996 45319004 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr17 - 46101215 46101223 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr6 + 47134858 47134866 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr22 + 49970968 49970976 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr20 - 50166300 50166308 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr15 - 67792636 67792644 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr10 - 72320811 72320819 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr5 - 74632306 74632314 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr5 - 99900733 99900741 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr13 - 110870342 110870350 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr6 + 111568551 111568559 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr12 - 114914452 114914460 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr12 + 122400642 122400650 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr12 + 124519192 124519200 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr6 + 136774439 136774447 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 153566730 153566738 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr1 - 155001105 155001113 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr3 - 171192448 171192456 2.22e-05 0.0849 ATGACTCAC
RTGACTCAY MEME-3 chr1 - 228452530 228452538 2.22e-05 0.0849 GTGACTCAG
RTGACTCAY MEME-3 chr1 + 236097079 236097087 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097118 236097126 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097147 236097155 2.22e-05 0.0849 gTGACTCAG
RTGACTCAY MEME-3 chr1 + 236097176 236097184 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097205 236097213 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097234 236097242 2.22e-05 0.0849 gTGACTCAG
RTGACTCAY MEME-3 chr1 + 236097263 236097271 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097292 236097300 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097321 236097329 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097350 236097358 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr1 + 236097379 236097387 2.22e-05 0.0849 gtgactcag
RTGACTCAY MEME-3 chr17 + 3890211 3890219 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr1 - 10528545 10528553 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr12 - 31749327 31749335 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr1 - 41870289 41870297 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr2 - 46481791 46481799 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr12 - 57112277 57112285 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr15 + 71747726 71747734 2.58e-05 0.0917 atgactcag
RTGACTCAY MEME-3 chr7 + 74994146 74994154 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr1 + 80054296 80054304 2.58e-05 0.0917 atgactcag
RTGACTCAY MEME-3 chr5 - 140711181 140711189 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr6 - 158040451 158040459 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr1 + 234700398 234700406 2.58e-05 0.0917 ATGACTCAG
RTGACTCAY MEME-3 chr8 + 630861 630869 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr8 + 630898 630906 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr8 + 630977 630985 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr8 + 631016 631024 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr8 + 631101 631109 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr4 + 1043865 1043873 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr19 - 4575553 4575561 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr16 - 15591115 15591123 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr16 + 25049918 25049926 2.98e-05 0.0942 ctgactcac
RTGACTCAY MEME-3 chr1 + 31432237 31432245 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr1 + 41432836 41432844 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr19 - 44212585 44212593 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr19 - 48399845 48399853 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr1 - 67686822 67686830 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr7 + 155205684 155205692 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr1 - 156660317 156660325 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr6 + 158040484 158040492 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr5 + 179819107 179819115 2.98e-05 0.0942 CTGACTCAC
RTGACTCAY MEME-3 chr1 + 228452659 228452667 2.98e-05 0.0942 ctgactcac
RTGACTCAY MEME-3 chr1 + 228452758 228452766 2.98e-05 0.0942 ctgactcac
RTGACTCAY MEME-3 chr19 + 1254715 1254723 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr19 - 16279388 16279396 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr21 - 34845897 34845905 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr8 - 37698875 37698883 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr6 - 43322124 43322132 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr17 - 48407108 48407116 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr10 + 72204399 72204407 3.31e-05 0.099 ttgactcat
RTGACTCAY MEME-3 chr9 - 85743247 85743255 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr6 + 133248942 133248950 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr1 - 148264723 148264731 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr1 - 228903226 228903234 3.31e-05 0.099 TTGACTCAT
RTGACTCAY MEME-3 chr4 - 1043790 1043798 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr17 + 3890336 3890344 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr1 - 16122918 16122926 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr10 - 68153730 68153738 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr17 + 68381130 68381138 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr15 - 74546292 74546300 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr7 - 80877117 80877125 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr14 + 101073336 101073344 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr13 + 110870398 110870406 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr12 - 121800101 121800109 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr1 + 234700531 234700539 3.71e-05 0.105 CTGACTCAG
RTGACTCAY MEME-3 chr10 - 20885854 20885862 4.04e-05 0.111 GTGACTAAT
RTGACTCAY MEME-3 chr1 + 67686874 67686882 4.04e-05 0.111 GTGACTAAT
RTGACTCAY MEME-3 chr1 + 89719676 89719684 4.04e-05 0.111 GTGACTAAT
RTGACTCAY MEME-3 chr13 + 100364140 100364148 4.04e-05 0.111 GTGACTAAT
RTGACTCAY MEME-3 chr5 + 124661571 124661579 4.04e-05 0.111 GTGACTAAT
RTGACTCAY MEME-3 chr6 - 137853788 137853796 4.04e-05 0.111 GTGACTAAT
RTGACTCAY MEME-3 chr19 - 8240567 8240575 4.41e-05 0.118 TTGACTCAC
RTGACTCAY MEME-3 chr1 + 11178260 11178268 4.41e-05 0.118 TTGACTCAC
RTGACTCAY MEME-3 chr6 + 21748857 21748865 4.41e-05 0.118 TTGACTCAC
RTGACTCAY MEME-3 chr11 + 117019680 117019688 4.41e-05 0.118 ttgactcac
RTGACTCAY MEME-3 chr12 - 122400772 122400780 4.41e-05 0.118 TTGACTCAC
RTGACTCAY MEME-3 chr5 + 140711207 140711215 4.41e-05 0.118 TTGACTCAC
RTGACTCAY MEME-3 chr16 - 10738928 10738936 4.72e-05 0.121 ATGACTAAT
RTGACTCAY MEME-3 chr5 + 36929243 36929251 4.72e-05 0.121 atgactaat
RTGACTCAY MEME-3 chr19 + 43201537 43201545 4.72e-05 0.121 atgactaat
RTGACTCAY MEME-3 chr14 + 58104776 58104784 4.72e-05 0.121 atgactaat
RTGACTCAY MEME-3 chr5 + 99900398 99900406 4.72e-05 0.121 atgactaat
RTGACTCAY MEME-3 chr6 + 124488092 124488100 4.72e-05 0.121 ATGACTAAT
RTGACTCAY MEME-3 chr9 - 127740990 127740998 4.72e-05 0.121 ATGACTAAT
RTGACTCAY MEME-3 chr5 - 136123432 136123440 4.72e-05 0.121 ATGACTAAT
RTGACTCAY MEME-3 chr6 - 142323548 142323556 4.72e-05 0.121 ATGACTAAT
RTGACTCAY MEME-3 chr21 + 26796288 26796296 5.08e-05 0.128 TTGACTCAG
RTGACTCAY MEME-3 chr19 - 40831915 40831923 5.08e-05 0.128 TTGACTCAG
RTGACTCAY MEME-3 chr12 + 68808897 68808905 5.08e-05 0.128 TTGACTCAG
RTGACTCAY MEME-3 chr3 + 100003273 100003281 5.08e-05 0.128 TTGACTCAG
RTGACTCAY MEME-3 chr6 + 52243321 52243329 5.78e-05 0.145 CTGACTAAT
RTGACTCAY MEME-3 chr4 - 119730333 119730341 5.78e-05 0.145 CTGACTAAT
RTGACTCAY MEME-3 chr19 + 2818354 2818362 6.49e-05 0.155 gTGACTAAG
RTGACTCAY MEME-3 chr19 + 2818411 2818419 6.49e-05 0.155 gtgactaag
RTGACTCAY MEME-3 chr19 + 2818612 2818620 6.49e-05 0.155 gtgactaag
RTGACTCAY MEME-3 chr5 - 14156788 14156796 6.49e-05 0.155 ATGACTAAC
RTGACTCAY MEME-3 chr10 + 17228538 17228546 6.49e-05 0.155 GTGACTAAG
RTGACTCAY MEME-3 chr19 - 32373965 32373973 6.49e-05 0.155 GTGACTAAG
RTGACTCAY MEME-3 chr19 - 33293466 33293474 6.49e-05 0.155 GTGACTAAG
RTGACTCAY MEME-3 chr19 - 34218638 34218646 6.49e-05 0.155 ATGACTAAC
RTGACTCAY MEME-3 chr20 - 53610329 53610337 6.49e-05 0.155 ATGACTAAC
RTGACTCAY MEME-3 chr12 - 90065641 90065649 6.49e-05 0.155 ATGACTAAC
RTGACTCAY MEME-3 chr5 - 175378675 175378683 6.49e-05 0.155 ATGACTAAC
RTGACTCAY MEME-3 chr19 + 2818468 2818476 6.82e-05 0.157 atgactaag
RTGACTCAY MEME-3 chr19 + 2818497 2818505 6.82e-05 0.157 atgactaag
RTGACTCAY MEME-3 chr19 + 2818526 2818534 6.82e-05 0.157 ATGACTAAG
RTGACTCAY MEME-3 chr19 + 2818554 2818562 6.82e-05 0.157 atgactaag
RTGACTCAY MEME-3 chr19 + 2818583 2818591 6.82e-05 0.157 atgactaag
RTGACTCAY MEME-3 chr13 + 20814666 20814674 6.82e-05 0.157 ATGACTAAG
RTGACTCAY MEME-3 chr10 + 22553090 22553098 6.82e-05 0.157 ATGACTAAG
RTGACTCAY MEME-3 chr5 + 37738316 37738324 6.82e-05 0.157 ATGACTAAG
RTGACTCAY MEME-3 chr12 + 122400682 122400690 6.82e-05 0.157 ATGACTAAG
RTGACTCAY MEME-3 chr1 - 154353744 154353752 6.82e-05 0.157 ATGACTAAG
RTGACTCAY MEME-3 chr17 - 21457191 21457199 7.19e-05 0.162 CTGACTAAC
RTGACTCAY MEME-3 chr17 + 46101556 46101564 7.19e-05 0.162 ctgactaac
RTGACTCAY MEME-3 chr19 + 50791008 50791016 7.19e-05 0.162 CTGACTAAC
RTGACTCAY MEME-3 chr1 + 51637297 51637305 7.19e-05 0.162 ctgactaac
RTGACTCAY MEME-3 chr1 - 175471083 175471091 7.19e-05 0.162 CTGACTAAC
RTGACTCAY MEME-3 chr12 + 54052117 54052125 7.5e-05 0.168 TTGACTAAT
RTGACTCAY MEME-3 chr3 - 9977124 9977132 7.86e-05 0.174 CTGACTAAG
RTGACTCAY MEME-3 chr17 - 45321031 45321039 7.86e-05 0.174 CTGACTAAG
RTGACTCAY MEME-3 chr12 + 90065754 90065762 7.86e-05 0.174 CTGACTAAG
RTGACTCAY MEME-3 chr17 - 39770207 39770215 8.2e-05 0.181 TTGACTAAC
RTGACTCAY MEME-3 chr1 - 228902989 228902997 8.2e-05 0.181 TTGACTAAC
RTGACTCAY MEME-3 chr10 + 114525585 114525593 8.9e-05 0.195 GTGACTCAA
RTGACTCAY MEME-3 chr1 - 214439703 214439711 8.9e-05 0.195 GTGACTCAA
RTGACTCAY MEME-3 chr21 - 17501637 17501645 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr19 - 34134865 34134873 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr17 + 39770114 39770122 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr20 + 44362829 44362837 9.24e-05 0.195 atgactcaa
RTGACTCAY MEME-3 chr6 + 90369163 90369171 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr6 + 133248705 133248713 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr5 + 136730042 136730050 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr6 - 149057600 149057608 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr1 + 228861373 228861381 9.24e-05 0.195 ATGACTCAA
RTGACTCAY MEME-3 chr6 + 21748936 21748944 9.94e-05 0.206 GTGACTTAT
RTGACTCAY MEME-3 chr19 + 35269823 35269831 9.94e-05 0.206 GTGACTGAT
RTGACTCAY MEME-3 chr19 + 37595384 37595392 9.94e-05 0.206 GTGACTGAT
RTGACTCAY MEME-3 chr17 - 39770094 39770102 9.94e-05 0.206 GTGACTGAT
RTGACTCAY MEME-3 chr6 - 142885519 142885527 9.94e-05 0.206 GTGACTTAT
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif RTGACTCAY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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