******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:48407054-48407554 1.0000 100 chr5:37738045-37738545 1.0000 100 chr1:10528325-10528825 1.0000 100 chr11:76208714-76209214 1.0000 100 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chr1:26189293-26189793 1.0000 100 chr19:11402109-11402609 1.0000 100 chr1:86774478-86774978 1.0000 100 chr7:133492058-133492558 1.0000 100 chr15:71115101-71115601 1.0000 100 chr1:16534892-16535392 1.0000 100 chr1:41870101-41870601 1.0000 100 chr3:194134809-194135309 1.0000 100 chr9:137023127-137023627 1.0000 100 chr5:17305893-17306393 1.0000 100 chr19:39125802-39126302 1.0000 100 chr16:1651610-1652110 1.0000 100 chr17:45320815-45321315 1.0000 100 chr5:6419268-6419768 1.0000 100 chr17:78558322-78558822 1.0000 100 chrX:1392290-1392790 1.0000 100 chr20:48921351-48921851 1.0000 100 chr1:61057583-61058083 1.0000 100 chr1:148264558-148265058 1.0000 100 chr5:124740978-124741478 1.0000 100 chr19:6737913-6738413 1.0000 100 chr19:11400849-11401349 1.0000 100 chr1:943063-943563 1.0000 100 chr5:1801205-1801705 1.0000 100 chr6:24774967-24775467 1.0000 100 chr1:156660096-156660596 1.0000 100 chr1:35769976-35770476 1.0000 100 chr15:70494069-70494569 1.0000 100 chr6:167734991-167735491 1.0000 100 chr19:50406372-50406872 1.0000 100 chr19:36139805-36140305 1.0000 100 chr12:31749162-31749662 1.0000 100 chr17:82065712-82066212 1.0000 100 chr10:22552798-22553298 1.0000 100 chr17:3890032-3890532 1.0000 100 chr16:30698965-30699465 1.0000 100 chr22:50705019-50705519 1.0000 100 chr6:2028598-2029098 1.0000 100 chr5:149551520-149552020 1.0000 100 chr19:38196256-38196756 1.0000 100 chr22:46762640-46763140 1.0000 100 chr7:73522253-73522753 1.0000 100 chr5:14156521-14157021 1.0000 100 chr17:28725164-28725664 1.0000 100 chr5:59303213-59303713 1.0000 100 chr5:352420-352920 1.0000 100 chr19:40612051-40612551 1.0000 100 chr17:60173281-60173781 1.0000 100 chr22:20117206-20117706 1.0000 100 chr21:43857427-43857927 1.0000 100 chr7:150360022-150360522 1.0000 100 chr19:727084-727584 1.0000 100 chr1:974702-975202 1.0000 100 chr1:31431786-31432286 1.0000 100 chr19:40750062-40750562 1.0000 100 chr8:630777-631277 1.0000 100 chr1:155244567-155245067 1.0000 100 chr6:27602218-27602718 1.0000 100 chr10:21525609-21526109 1.0000 100 chr6:43321920-43322420 1.0000 100 chr17:7836626-7837126 1.0000 100 chr19:43950925-43951425 1.0000 100 chr2:27890139-27890639 1.0000 100 chr17:82586125-82586625 1.0000 100 chr12:123383425-12338392 1.0000 100 chr6:27671963-27672463 1.0000 100 chr1:27348762-27349262 1.0000 100 chr1:1239717-1240217 1.0000 100 chr1:16122835-16123335 1.0000 100 chr19:58557933-58558433 1.0000 100 chr14:20657035-20657535 1.0000 100 chr6:82260178-82260678 1.0000 100 chr7:159013226-159013726 1.0000 100 chr19:44813550-44814050 1.0000 100 chr19:50415961-50416461 1.0000 100 chr2:218568521-218569021 1.0000 100 chr1:228452407-228452907 1.0000 100 chr12:51172719-51173219 1.0000 100 chr5:1501653-1502153 1.0000 100 chr19:50790915-50791415 1.0000 100 chr11:65551585-65552085 1.0000 100 chr1:236097026-236097526 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.241 C 0.259 G 0.259 T 0.241 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.240 C 0.260 G 0.260 T 0.240 ******************************************************************************** ******************************************************************************** MOTIF YYTGACCYCTGACCYC MEME-1 width = 16 sites = 136 llr = 1475 E-value = 2.4e-148 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:1371:::::9:::: pos.-specific C 451118757:11a947 probability G 222611::1:91:::: matrix T 336:1:352a::::62 bits 2.1 1.9 * * 1.6 * * 1.4 ***** Relative 1.2 ***** Entropy 1.0 ** ***** * (15.6 bits) 0.8 *********** 0.6 ************ 0.4 *************** 0.2 **************** 0.0 ---------------- Multilevel CCTGACCTCTGACCTC consensus TTGA TCT CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:44813550-44814050 + 48 2.70e-10 CAAGCCCCAT CCTGACCTCTGACCTC CGACCTCCAC chr17:50113547-50114047 - 24 2.70e-10 TGGCCACCAC CCTGACCTCTGACCTC TAGGCAAGGT chr18:56651361-56651861 - 76 5.62e-10 CCTTTGACC CCTGACCCCTGACCTC CACGGTGCAG chr17:42117640-42118140 - 44 1.60e-09 CAGGTGGATA CTTGACCCCTGACCTC TGACCCTCAT chr1:43389703-43390203 - 4 1.60e-09 GTGTTCCACT CTTGACCCCTGACCTC GCT chr22:46762640-46763140 - 35 4.56e-09 CCACCTGACC TCTGACCCCTGACCCC GACCTGGCCC chr7:4641734-4642234 - 54 5.85e-09 CCCCGCGCCC GCTGACCTCTGACCTC CGACCCCACT chr11:64259402-64259902 + 21 5.85e-09 TATCATTTCA Gctgacctctgacctc tcacccctga chr12:131929275-13192977 - 24 8.43e-09 CCTCACTCCT GCTGACCCCTGACCTC TCAGGCCCCG chr12:65956131-65956631 + 21 8.43e-09 TACTTTTTGA CTTAACCTCTGACCTC TGACATCACC chr6:33170982-33171482 - 58 8.43e-09 TGTCCATGAC CTTGACTTCTGACCTC CTGGCCTTTA chr22:50705019-50705519 + 84 1.03e-08 GCCTGAGGCC TTTGACCCCTGACCCC T chr1:26189293-26189793 + 44 2.20e-08 cctccgacct cctgacctctgaccct ggccagcact chr22:37570297-37570797 + 79 4.00e-08 TTGACCTCAC CTTGACCTCTGACCCT GGGCTG chr1:1239717-1240217 - 50 4.77e-08 ACGGCCTCAA CCCGACCCCTGACCCC TGACCCTTGA chr21:46124825-46125325 - 9 5.81e-08 GCTCTCTGAC CTTGCCCTCTGACCTC CTCCACTG chr22:20117206-20117706 - 83 7.80e-08 AC CTCGACCCCTGACCCC AGCGGCGGGA chr2:218568521-218569021 - 74 9.11e-08 CCCTCTGACC TCTCACCCCTGACCCC ACCCACACAT chr6:27671963-27672463 + 53 9.11e-08 caggctggtc tccaacccctgacctc aaatgatccg chr19:42349688-42350188 + 57 1.05e-07 ccctgctgac cctgacctctgccctc catactttga chr11:62771363-62771863 + 48 1.44e-07 ACCCAAGTTC AGTGACCCCTGACCTC CTCCCCCCGC chr19:39032983-39033483 - 74 1.44e-07 CAGGCTGGTC TCGAACTTCTGACCTC AAGCGATCCG chr6:27602218-27602718 + 35 1.70e-07 caggctggtc tcgaactcctgacctc aggtgatcca chr6:31959067-31959567 + 5 1.70e-07 GACC CCTGACTTTTGACCTT TCCCCGTAGT chr3:190424480-190424980 - 27 1.70e-07 CAGGTTGGTC TCGAACTCCTGACCTC AGGTCATCCG chr6:30907517-30908017 + 22 1.70e-07 caggatggtc tcgaactcctgacctc gggtgattcg chr12:10211934-10212434 + 36 1.70e-07 caggctggtc tcgaactcctgacctc aggtgatccg chr11:65636897-65637397 + 33 1.70e-07 ACTGAGTGAC CCAGACCTCTGACCTT GACCCCTGAT chr20:31572599-31573099 - 61 2.27e-07 TGCAAGAACA GCTGAACTCTGACCTC CTGAATGGCC chr15:72107089-72107589 - 44 2.27e-07 CAGGCTGGTC TGGGACTCCTGACCTC AGGTGATCTG chr21:43857427-43857927 - 54 2.62e-07 CATACTGATC TTGAACTCCTGACCTC AGGTGATCTG chr20:38033475-38033975 + 34 2.62e-07 TGCTCCGGCC CTTGCCCTTTGACCTC GCTCTCGCGG chr19:5696548-5697048 - 25 2.62e-07 CAGGCTACCA AGTGACCTCTGACCCC GCTGTGCACC chr1:51637018-51637518 - 57 2.62e-07 CAGGCTGTTC TTGAACTCCTGACCTC ATGTGATCCA chr20:34390748-34391248 + 23 2.62e-07 caggctggtg ttgaactcctgacctc aggtgattca chr16:10738686-10739186 + 59 2.62e-07 catgctggtc ttgaactcctgacctc tagtgatcca chr6:32636642-32637142 - 36 2.62e-07 CACGCTGGTC TTGAACTCCTGACCTC ATGATCTGCC chr19:50406372-50406872 + 2 2.98e-07 C CCCGGCCTCTGACCTC AACTTCACGC chr15:71115101-71115601 - 31 2.98e-07 CGGCCCCCAT CCGCACCCCTGACCCC GGAGGTCAAC chr19:58557933-58558433 + 29 3.88e-07 GCTCGGGGCC CTTCACCTCTGACCCT CAGCAACCGC chr8:143937576-143938076 - 44 3.88e-07 CTGCTTGGAC TCTGAACCTTGACCTC TGCCCTTTAC chr19:40612051-40612551 + 66 4.47e-07 CCCCAGAGCC TGTGACTCCTGACCCT GACCTGGACC chr1:61057583-61058083 + 50 4.47e-07 caggctggtc gcgaactcctgacctc aggtgatcca chr12:122368513-12236901 - 14 4.47e-07 CAGGCCTGTC TCAAACTCCTGACCTC AAGTGATCTG chr1:27348762-27349262 + 36 5.10e-07 GCTGGAGCCC TATGACCTCTGACCCC AATATGACCT chr16:30381273-30381773 - 22 5.10e-07 CCCTCTGGCC TTTGATCTCTGACCTC ACATCCTCTC chr1:1332232-1332732 + 8 5.10e-07 AGGCCTG GCTGACCTCTGACCTG GTCATGGGGC chr6:27684095-27684595 + 21 5.84e-07 tagggtggtc tggaactcctgacctc aggtgatccg chr19:29666012-29666512 - 72 5.84e-07 TCCCCACCTC CTTGGCCTCTGACCCT CTCTGGCCAG chr17:43368333-43368833 + 81 5.84e-07 cagactggtc tggaactcctgacctc gtga chr1:154353334-154353834 + 20 6.66e-07 ttccccctca cctgacccctaacccc tatcaactct chr17:6470598-6471098 - 15 7.50e-07 CCTGACAGGG TCTGAGCTTTGACCTC AAACAGAGCC chrX:1392290-1392790 + 79 8.47e-07 TGCCCCGACC CCCGACCCTTGACCCT TGACCT chr19:38464651-38465151 - 24 8.47e-07 AATCCTGGAC ATTCACCTCTGACCCC AGAGCCCTGA chr2:131803166-131803666 - 7 8.47e-07 ACCCCTAATC CCTAACCCCTAACCTC TCTTAA chr19:39125802-39126302 - 6 9.53e-07 TCCCTCCACC AGTGACCTTTGACCCC GGCGG chr7:159013226-159013726 - 69 1.07e-06 CCGACCTCAA CCTCAACCCTGACCCC AACCCAACCC chr19:11400849-11401349 - 40 1.07e-06 TTTGGTCCTA TCTGACCCATGACCTT ATTCATGACC chr1:236281638-236282138 - 53 1.07e-06 GGACTGGAGT GCAGACCTCTGACCCT GGAGTCGCTC chr17:4810874-4811374 + 14 1.07e-06 CTTTAATCTT CCTGACCTTTGACATC TTTAACCACA chr11:65551585-65552085 - 37 1.21e-06 GACCTCCCAC CTGACCCTCTGACCCC TGACCCAGAT chr17:82065712-82066212 - 3 1.21e-06 GACCTCAGCC TCTGACCTCCGACCCC GC chr19:50790915-50791415 + 17 1.36e-06 TTGACTCCAG TCAGACCTCTGGCCTC TGACATTTGA chr17:75368239-75368739 + 5 1.54e-06 gatc tcaaactcttgacctc gtgatccatc chr6:159726847-159727347 + 31 1.54e-06 ATGCCCTGGG GCTGACCTCCGACCTC GCTGGCCCGC chr1:974702-975202 - 53 1.72e-06 CTGTGACCCT CATGCCCTCTGACCTC ACATACTCTG chr12:31078667-31079167 + 40 1.72e-06 caggatgatc tcagtcttctgacctc gtgatccgcc chr20:62320688-62321188 - 16 1.72e-06 ACCCAATGAC ACTGACCTGTGACCCC ACATCGCCTG chr12:132363260-13236376 + 29 1.72e-06 ccttgctccc ttggtcccttgacctc ttgacctGTC chr7:73522253-73522753 - 3 1.93e-06 GCTTACATAA CGTGACCTTTCACCTC TT chr21:36210036-36210536 - 57 2.16e-06 CCGGCTGCTC TTGACCTCCTGACCTC AAGTGATTCA chr17:7836626-7837126 - 2 2.40e-06 CACCTCTAAC ACAGACCTTTGACCCC T chr6:167734991-167735491 + 34 2.40e-06 TGCCGCTGAC CTCCCCCTCTGACCTC CGCCATTGAC chr6:33677652-33678152 + 83 2.40e-06 TCAGCTTCAT CTCAACCTTTGACCCT CA chr19:50415961-50416461 + 83 2.67e-06 CCAGAGACTC CGTGACCTCCGACCCC AT chr16:23557261-23557761 - 49 2.67e-06 TAGCCCTTTC TCTGGCCTCTGCCCCC TGGTGGCGAG chr2:27890139-27890639 + 37 3.67e-06 CAACCTGGAC GGTGACCTCTGCCCTT TGCCCGACCC chr20:64286561-64287061 - 12 4.53e-06 AACCCTAAAC CCTAACCCCTAACCCT AACCCTAACC chr19:35889351-35889851 - 3 5.01e-06 TGCCCCTAAC CTTGGGTCCTGACCTC AG chr21:45318774-45319274 - 46 5.01e-06 ACCGGCGTCC GGTGCCCTTTGACCTT GGCCTGGCTC chr4:705093-705593 + 36 5.54e-06 taaccctgac tctaacccctaaccct gaccctaaac chr19:40750062-40750562 - 33 6.10e-06 GGTGTCCTTT TTGACCTCTTGACCTC TGACTCAAAG chr5:98773065-98773565 - 25 6.10e-06 TTACAAAGGT ACCGGCCTTTGACCTC TCCTTGAATT chr19:727084-727584 + 67 6.72e-06 ctgaccccaa cctcaatcctgaccct gaccttgact chr1:207321289-207321789 + 61 6.72e-06 AGCCCTCTGA CCGCACCTCTGACCAC AACAAACCCC chr17:82586125-82586625 - 13 7.40e-06 TTTCCCCTCC GCCTACCTTTGACCTC CCTGTGGTCT chr12:120528712-12052921 + 22 7.40e-06 CTCTCGCCCC TTTCACCTTTGCCCCC CTTCTCCTCT chr19:38196256-38196756 - 47 8.97e-06 GACCTCCATG CTCCTCCCTTGACCTC CTTGCTCCGC chr1:35769976-35770476 + 29 8.97e-06 AGCCGTGGTC TTTGACCTTTGACACT TGCCAAAGCA chr9:127740658-127741158 + 43 1.08e-05 caagatgatc tcaatctcctgacctt gtgctccacc chr5:49407-49907 - 40 1.19e-05 ACCCGGAAGT GCTGTACCCTGACCCT GACCCTAACC chr11:118997907-11899840 - 25 1.19e-05 TACGCCATCC GGCGGCCTCTGACCCT GACCCCTCGG chr18:59265109-59265609 - 53 1.30e-05 TCATAGCTCA CTGCAGCCTTGACCTC TCAGCCTCAA chr7:6373651-6374151 + 3 1.42e-05 tc tcgatctcttgacctt gtgatccgcc chr19:8389695-8390195 + 70 1.55e-05 GGCAGCGCGC GCTGACCTATGACGTC ATCGGGACGT chr5:6419268-6419768 + 52 1.69e-05 TCTTTTTGAC CCTGACTTGTCACCTT GGCATATTCT chr4:140756863-140757363 + 9 1.69e-05 TCACCGCT TGTGACCCCTCCCCCC TCTCCATTCC chr1:228452407-228452907 + 13 2.02e-05 CTcctccctg acccaaccctgacccc tcctgacctt chr19:6737913-6738413 + 32 2.02e-05 ttgaccctag gatgacctatgacccc aggctgagac chr19:40590364-40590864 + 28 2.02e-05 CAACCCCTGT CTCAGCCTCTGGCCCC CATGCATTGA chr15:77067253-77067753 + 17 2.20e-05 TGCCAAAGCA ATTAAACTTTGACCCT TGTTAACAAT chr1:211675734-211676234 + 1 2.20e-05 . TTTGCACTCTGGCCCC TCACACTACC chr6:26571578-26572078 - 46 2.20e-05 CCTCTCCCAC CTTACCCTTTGGCCTT TACTCCTATC chrX:38061250-38061750 + 36 2.20e-05 AAAATTGAAA TTCCCACCCTGACCTC TAAGAGATGA chr1:6701552-6702052 + 52 2.20e-05 TCGCCATCTT CGCAACCTTTCACCCC GCCAAACCGG chr16:30698965-30699465 - 47 2.40e-05 GCCAACAAGC CTTAACTCTTGACTTC AGGTTTCGTG chr17:7844450-7844950 + 78 2.40e-05 TCTTGTCCTG GCTGCCTTCTGGCCCT GACGGCC chr2:25078398-25078898 - 21 2.40e-05 CCTAGGTCTC ATTTTCTTCTGACCTC AATACAGTAT chr1:232950442-232950942 + 30 2.83e-05 CCAACCTGGA CTGCTCCCCTGACCGC AACCCCTACC chr7:6009094-6009594 + 2 3.07e-05 T CGTGACCTCTGACGGT TTCTGAGCGT chr19:38667025-38667525 + 62 3.33e-05 GCTGTCACCG CCAAGCCTCTGGCCTT GGGGCGAGGA chr17:8226713-8227213 - 37 3.33e-05 TTGTGTGTGT TTTGTTTTCTGACCCT CTGCTGTTAT chr7:100450358-100450858 - 18 3.61e-05 GTTAAGGTCG CGTCGCCCTTGGCCTC TGGCTGGGGA chr5:396968-397468 + 53 3.91e-05 TGACCATCCA CGTAGCCCCTGACCAT CCACGTAGCC chr7:73308582-73309082 - 73 3.91e-05 CCCGGAAGGT CGTGCTTTTTGACCCC GGAAGTCCGG chr11:67266005-67266505 - 60 3.91e-05 AGACCCTGGC CGTGACCTCGGCCCTC GATGCTGGAC chr8:123156773-123157273 - 16 3.91e-05 CTCGACCTGC CCTCGCCCTTGCCCTT GCCCTTGCCC chr5:173057131-173057631 - 5 3.91e-05 CGCCCTTTGC CCTGTCTCCTCCCCTC TCAG chr11:76208714-76209214 - 6 3.91e-05 TCAGGAGGCG CGTGCACCCTGACCCG CGAGC chr5:684812-685312 - 11 4.95e-05 CCGTGACCTT TCAGGACTGTGACCTC TCTGGACGTG chr19:4575291-4575791 - 37 4.95e-05 CAGGACTTGT GGTCCGCTCTGACCCC GGGGCCTTTC chr19:11402109-11402609 - 45 6.21e-05 TTGATCCTAC CTGTACTCCTGACACC ACCCCACACT chr6:142885234-142885734 - 40 6.21e-05 TGTTGTTTAG CTTTATCTGTGACCTC AGCGAATGGA chr19:1021419-1021919 - 65 6.21e-05 TATGACGTTA CTGGCCCTGTGACGTC ATGGCAGGAT chr5:176537567-176538067 + 23 6.21e-05 GTGCAATGGG TCTGACCTCTGACGGG GCGAGAGCGG chr19:34134441-34134941 + 60 7.75e-05 GCCCAGTCTT CCCGGCCCCTGCCCCG GACCCTCCTG chr19:1254474-1254974 + 78 8.34e-05 TGGGTTGGTT GTGACCTCGTGACCTT GGGCTAG chr14:49586562-49587062 - 24 8.34e-05 CTGATCAGCA CGGGAGTTTTGACCTG CTCCGTTTCC chr1:237864259-237864759 + 26 9.62e-05 cacgtgtccg ggagagcgctgacctc cgggccaagg chr19:1173485-1173985 - 26 1.19e-04 CCGCTTTTCC TCGGTATCCTGGCCTT CCCTTTTGGG chr17:48626415-48626915 - 5 1.19e-04 TACGTGGCCG CCGGAGCCCTGACGTG ATAG chr12:51172719-51173219 + 60 1.36e-04 TTTCCGCTGA GCCGACTTCTCGCCCT CTGTAGCCCC chr5:17305893-17306393 - 32 1.45e-04 TTGTTTAACA CGCAACTGCTGACATC ATTGCCTGAA chr8:143389916-143390416 - 9 1.45e-04 GCCACTCACT CCAGGCCGCTCACCCC GTGGTCAC chr19:35995014-35995514 - 55 2.15e-04 AGCCGGCTGT GCCGGCTCATGACCGC GGCTAAGCAG chr17:42535853-42536353 - 55 3.12e-04 CTCCCTTGGG GGCGTCTCGTGACCGC ACGCGGTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44813550-44814050 2.7e-10 47_[+1]_37 chr17:50113547-50114047 2.7e-10 23_[-1]_61 chr18:56651361-56651861 5.6e-10 75_[-1]_9 chr17:42117640-42118140 1.6e-09 43_[-1]_41 chr1:43389703-43390203 1.6e-09 3_[-1]_81 chr22:46762640-46763140 4.6e-09 34_[-1]_50 chr7:4641734-4642234 5.8e-09 53_[-1]_31 chr11:64259402-64259902 5.8e-09 20_[+1]_64 chr12:131929275-13192977 8.4e-09 23_[-1]_61 chr12:65956131-65956631 8.4e-09 20_[+1]_64 chr6:33170982-33171482 8.4e-09 57_[-1]_27 chr22:50705019-50705519 1e-08 83_[+1]_1 chr1:26189293-26189793 2.2e-08 43_[+1]_41 chr22:37570297-37570797 4e-08 78_[+1]_6 chr1:1239717-1240217 4.8e-08 49_[-1]_35 chr21:46124825-46125325 5.8e-08 8_[-1]_76 chr22:20117206-20117706 7.8e-08 82_[-1]_2 chr2:218568521-218569021 9.1e-08 73_[-1]_11 chr6:27671963-27672463 9.1e-08 52_[+1]_32 chr19:42349688-42350188 1.1e-07 56_[+1]_28 chr11:62771363-62771863 1.4e-07 47_[+1]_37 chr19:39032983-39033483 1.4e-07 73_[-1]_11 chr6:27602218-27602718 1.7e-07 34_[+1]_50 chr6:31959067-31959567 1.7e-07 4_[+1]_80 chr3:190424480-190424980 1.7e-07 26_[-1]_58 chr6:30907517-30908017 1.7e-07 21_[+1]_63 chr12:10211934-10212434 1.7e-07 35_[+1]_49 chr11:65636897-65637397 1.7e-07 32_[+1]_52 chr20:31572599-31573099 2.3e-07 60_[-1]_24 chr15:72107089-72107589 2.3e-07 43_[-1]_41 chr21:43857427-43857927 2.6e-07 53_[-1]_31 chr20:38033475-38033975 2.6e-07 33_[+1]_51 chr19:5696548-5697048 2.6e-07 24_[-1]_60 chr1:51637018-51637518 2.6e-07 56_[-1]_28 chr20:34390748-34391248 2.6e-07 22_[+1]_62 chr16:10738686-10739186 2.6e-07 58_[+1]_26 chr6:32636642-32637142 2.6e-07 35_[-1]_49 chr19:50406372-50406872 3e-07 1_[+1]_83 chr15:71115101-71115601 3e-07 30_[-1]_54 chr19:58557933-58558433 3.9e-07 28_[+1]_56 chr8:143937576-143938076 3.9e-07 43_[-1]_41 chr19:40612051-40612551 4.5e-07 65_[+1]_19 chr1:61057583-61058083 4.5e-07 49_[+1]_35 chr12:122368513-12236901 4.5e-07 13_[-1]_71 chr1:27348762-27349262 5.1e-07 35_[+1]_49 chr16:30381273-30381773 5.1e-07 21_[-1]_63 chr1:1332232-1332732 5.1e-07 7_[+1]_77 chr6:27684095-27684595 5.8e-07 20_[+1]_64 chr19:29666012-29666512 5.8e-07 71_[-1]_13 chr17:43368333-43368833 5.8e-07 80_[+1]_4 chr1:154353334-154353834 6.7e-07 19_[+1]_65 chr17:6470598-6471098 7.5e-07 14_[-1]_70 chrX:1392290-1392790 8.5e-07 78_[+1]_6 chr19:38464651-38465151 8.5e-07 23_[-1]_61 chr2:131803166-131803666 8.5e-07 6_[-1]_78 chr19:39125802-39126302 9.5e-07 5_[-1]_79 chr7:159013226-159013726 1.1e-06 68_[-1]_16 chr19:11400849-11401349 1.1e-06 39_[-1]_45 chr1:236281638-236282138 1.1e-06 52_[-1]_32 chr17:4810874-4811374 1.1e-06 13_[+1]_71 chr11:65551585-65552085 1.2e-06 36_[-1]_48 chr17:82065712-82066212 1.2e-06 2_[-1]_82 chr19:50790915-50791415 1.4e-06 16_[+1]_68 chr17:75368239-75368739 1.5e-06 4_[+1]_80 chr6:159726847-159727347 1.5e-06 30_[+1]_54 chr1:974702-975202 1.7e-06 52_[-1]_32 chr12:31078667-31079167 1.7e-06 39_[+1]_45 chr20:62320688-62321188 1.7e-06 15_[-1]_69 chr12:132363260-13236376 1.7e-06 28_[+1]_56 chr7:73522253-73522753 1.9e-06 2_[-1]_82 chr21:36210036-36210536 2.2e-06 56_[-1]_28 chr17:7836626-7837126 2.4e-06 1_[-1]_83 chr6:167734991-167735491 2.4e-06 33_[+1]_51 chr6:33677652-33678152 2.4e-06 82_[+1]_2 chr19:50415961-50416461 2.7e-06 82_[+1]_2 chr16:23557261-23557761 2.7e-06 48_[-1]_36 chr2:27890139-27890639 3.7e-06 36_[+1]_48 chr20:64286561-64287061 4.5e-06 11_[-1]_73 chr19:35889351-35889851 5e-06 2_[-1]_82 chr21:45318774-45319274 5e-06 45_[-1]_39 chr4:705093-705593 5.5e-06 35_[+1]_49 chr19:40750062-40750562 6.1e-06 32_[-1]_52 chr5:98773065-98773565 6.1e-06 24_[-1]_60 chr19:727084-727584 6.7e-06 66_[+1]_18 chr1:207321289-207321789 6.7e-06 60_[+1]_24 chr17:82586125-82586625 7.4e-06 12_[-1]_72 chr12:120528712-12052921 7.4e-06 21_[+1]_63 chr19:38196256-38196756 9e-06 46_[-1]_38 chr1:35769976-35770476 9e-06 28_[+1]_56 chr9:127740658-127741158 1.1e-05 42_[+1]_42 chr5:49407-49907 1.2e-05 39_[-1]_45 chr11:118997907-11899840 1.2e-05 24_[-1]_60 chr18:59265109-59265609 1.3e-05 52_[-1]_32 chr7:6373651-6374151 1.4e-05 2_[+1]_82 chr19:8389695-8390195 1.6e-05 69_[+1]_15 chr5:6419268-6419768 1.7e-05 51_[+1]_33 chr4:140756863-140757363 1.7e-05 8_[+1]_76 chr1:228452407-228452907 2e-05 12_[+1]_72 chr19:6737913-6738413 2e-05 31_[+1]_53 chr19:40590364-40590864 2e-05 27_[+1]_57 chr15:77067253-77067753 2.2e-05 16_[+1]_68 chr1:211675734-211676234 2.2e-05 [+1]_84 chr6:26571578-26572078 2.2e-05 45_[-1]_39 chrX:38061250-38061750 2.2e-05 35_[+1]_49 chr1:6701552-6702052 2.2e-05 51_[+1]_33 chr16:30698965-30699465 2.4e-05 46_[-1]_38 chr17:7844450-7844950 2.4e-05 77_[+1]_7 chr2:25078398-25078898 2.4e-05 20_[-1]_64 chr1:232950442-232950942 2.8e-05 29_[+1]_55 chr7:6009094-6009594 3.1e-05 1_[+1]_83 chr19:38667025-38667525 3.3e-05 61_[+1]_23 chr17:8226713-8227213 3.3e-05 36_[-1]_48 chr7:100450358-100450858 3.6e-05 17_[-1]_67 chr5:396968-397468 3.9e-05 52_[+1]_32 chr7:73308582-73309082 3.9e-05 72_[-1]_12 chr11:67266005-67266505 3.9e-05 59_[-1]_25 chr8:123156773-123157273 3.9e-05 15_[-1]_69 chr5:173057131-173057631 3.9e-05 4_[-1]_80 chr11:76208714-76209214 3.9e-05 5_[-1]_79 chr5:684812-685312 4.9e-05 10_[-1]_74 chr19:4575291-4575791 4.9e-05 36_[-1]_48 chr19:11402109-11402609 6.2e-05 44_[-1]_40 chr6:142885234-142885734 6.2e-05 39_[-1]_45 chr19:1021419-1021919 6.2e-05 64_[-1]_20 chr5:176537567-176538067 6.2e-05 22_[+1]_62 chr19:34134441-34134941 7.8e-05 59_[+1]_25 chr19:1254474-1254974 8.3e-05 77_[+1]_7 chr14:49586562-49587062 8.3e-05 23_[-1]_61 chr1:237864259-237864759 9.6e-05 25_[+1]_59 chr19:1173485-1173985 0.00012 25_[-1]_59 chr17:48626415-48626915 0.00012 4_[-1]_80 chr12:51172719-51173219 0.00014 59_[+1]_25 chr5:17305893-17306393 0.00015 31_[-1]_53 chr8:143389916-143390416 0.00015 8_[-1]_76 chr19:35995014-35995514 0.00022 54_[-1]_30 chr17:42535853-42536353 0.00031 54_[-1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYTGACCYCTGACCYC width=16 seqs=136 chr19:44813550-44814050 ( 48) CCTGACCTCTGACCTC 1 chr17:50113547-50114047 ( 24) CCTGACCTCTGACCTC 1 chr18:56651361-56651861 ( 76) CCTGACCCCTGACCTC 1 chr17:42117640-42118140 ( 44) CTTGACCCCTGACCTC 1 chr1:43389703-43390203 ( 4) CTTGACCCCTGACCTC 1 chr22:46762640-46763140 ( 35) TCTGACCCCTGACCCC 1 chr7:4641734-4642234 ( 54) GCTGACCTCTGACCTC 1 chr11:64259402-64259902 ( 21) GCTGACCTCTGACCTC 1 chr12:131929275-13192977 ( 24) GCTGACCCCTGACCTC 1 chr12:65956131-65956631 ( 21) CTTAACCTCTGACCTC 1 chr6:33170982-33171482 ( 58) CTTGACTTCTGACCTC 1 chr22:50705019-50705519 ( 84) TTTGACCCCTGACCCC 1 chr1:26189293-26189793 ( 44) CCTGACCTCTGACCCT 1 chr22:37570297-37570797 ( 79) CTTGACCTCTGACCCT 1 chr1:1239717-1240217 ( 50) CCCGACCCCTGACCCC 1 chr21:46124825-46125325 ( 9) CTTGCCCTCTGACCTC 1 chr22:20117206-20117706 ( 83) CTCGACCCCTGACCCC 1 chr2:218568521-218569021 ( 74) TCTCACCCCTGACCCC 1 chr6:27671963-27672463 ( 53) TCCAACCCCTGACCTC 1 chr19:42349688-42350188 ( 57) CCTGACCTCTGCCCTC 1 chr11:62771363-62771863 ( 48) AGTGACCCCTGACCTC 1 chr19:39032983-39033483 ( 74) TCGAACTTCTGACCTC 1 chr6:27602218-27602718 ( 35) TCGAACTCCTGACCTC 1 chr6:31959067-31959567 ( 5) CCTGACTTTTGACCTT 1 chr3:190424480-190424980 ( 27) TCGAACTCCTGACCTC 1 chr6:30907517-30908017 ( 22) TCGAACTCCTGACCTC 1 chr12:10211934-10212434 ( 36) TCGAACTCCTGACCTC 1 chr11:65636897-65637397 ( 33) CCAGACCTCTGACCTT 1 chr20:31572599-31573099 ( 61) GCTGAACTCTGACCTC 1 chr15:72107089-72107589 ( 44) TGGGACTCCTGACCTC 1 chr21:43857427-43857927 ( 54) TTGAACTCCTGACCTC 1 chr20:38033475-38033975 ( 34) CTTGCCCTTTGACCTC 1 chr19:5696548-5697048 ( 25) AGTGACCTCTGACCCC 1 chr1:51637018-51637518 ( 57) TTGAACTCCTGACCTC 1 chr20:34390748-34391248 ( 23) TTGAACTCCTGACCTC 1 chr16:10738686-10739186 ( 59) TTGAACTCCTGACCTC 1 chr6:32636642-32637142 ( 36) TTGAACTCCTGACCTC 1 chr19:50406372-50406872 ( 2) CCCGGCCTCTGACCTC 1 chr15:71115101-71115601 ( 31) CCGCACCCCTGACCCC 1 chr19:58557933-58558433 ( 29) CTTCACCTCTGACCCT 1 chr8:143937576-143938076 ( 44) TCTGAACCTTGACCTC 1 chr19:40612051-40612551 ( 66) TGTGACTCCTGACCCT 1 chr1:61057583-61058083 ( 50) GCGAACTCCTGACCTC 1 chr12:122368513-12236901 ( 14) TCAAACTCCTGACCTC 1 chr1:27348762-27349262 ( 36) TATGACCTCTGACCCC 1 chr16:30381273-30381773 ( 22) TTTGATCTCTGACCTC 1 chr1:1332232-1332732 ( 8) GCTGACCTCTGACCTG 1 chr6:27684095-27684595 ( 21) TGGAACTCCTGACCTC 1 chr19:29666012-29666512 ( 72) CTTGGCCTCTGACCCT 1 chr17:43368333-43368833 ( 81) TGGAACTCCTGACCTC 1 chr1:154353334-154353834 ( 20) CCTGACCCCTAACCCC 1 chr17:6470598-6471098 ( 15) TCTGAGCTTTGACCTC 1 chrX:1392290-1392790 ( 79) CCCGACCCTTGACCCT 1 chr19:38464651-38465151 ( 24) ATTCACCTCTGACCCC 1 chr2:131803166-131803666 ( 7) CCTAACCCCTAACCTC 1 chr19:39125802-39126302 ( 6) AGTGACCTTTGACCCC 1 chr7:159013226-159013726 ( 69) CCTCAACCCTGACCCC 1 chr19:11400849-11401349 ( 40) TCTGACCCATGACCTT 1 chr1:236281638-236282138 ( 53) GCAGACCTCTGACCCT 1 chr17:4810874-4811374 ( 14) CCTGACCTTTGACATC 1 chr11:65551585-65552085 ( 37) CTGACCCTCTGACCCC 1 chr17:82065712-82066212 ( 3) TCTGACCTCCGACCCC 1 chr19:50790915-50791415 ( 17) TCAGACCTCTGGCCTC 1 chr17:75368239-75368739 ( 5) TCAAACTCTTGACCTC 1 chr6:159726847-159727347 ( 31) GCTGACCTCCGACCTC 1 chr1:974702-975202 ( 53) CATGCCCTCTGACCTC 1 chr12:31078667-31079167 ( 40) TCAGTCTTCTGACCTC 1 chr20:62320688-62321188 ( 16) ACTGACCTGTGACCCC 1 chr12:132363260-13236376 ( 29) TTGGTCCCTTGACCTC 1 chr7:73522253-73522753 ( 3) CGTGACCTTTCACCTC 1 chr21:36210036-36210536 ( 57) TTGACCTCCTGACCTC 1 chr17:7836626-7837126 ( 2) ACAGACCTTTGACCCC 1 chr6:167734991-167735491 ( 34) CTCCCCCTCTGACCTC 1 chr6:33677652-33678152 ( 83) CTCAACCTTTGACCCT 1 chr19:50415961-50416461 ( 83) CGTGACCTCCGACCCC 1 chr16:23557261-23557761 ( 49) TCTGGCCTCTGCCCCC 1 chr2:27890139-27890639 ( 37) GGTGACCTCTGCCCTT 1 chr20:64286561-64287061 ( 12) CCTAACCCCTAACCCT 1 chr19:35889351-35889851 ( 3) CTTGGGTCCTGACCTC 1 chr21:45318774-45319274 ( 46) GGTGCCCTTTGACCTT 1 chr4:705093-705593 ( 36) TCTAACCCCTAACCCT 1 chr19:40750062-40750562 ( 33) TTGACCTCTTGACCTC 1 chr5:98773065-98773565 ( 25) ACCGGCCTTTGACCTC 1 chr19:727084-727584 ( 67) CCTCAATCCTGACCCT 1 chr1:207321289-207321789 ( 61) CCGCACCTCTGACCAC 1 chr17:82586125-82586625 ( 13) GCCTACCTTTGACCTC 1 chr12:120528712-12052921 ( 22) TTTCACCTTTGCCCCC 1 chr19:38196256-38196756 ( 47) CTCCTCCCTTGACCTC 1 chr1:35769976-35770476 ( 29) TTTGACCTTTGACACT 1 chr9:127740658-127741158 ( 43) TCAATCTCCTGACCTT 1 chr5:49407-49907 ( 40) GCTGTACCCTGACCCT 1 chr11:118997907-11899840 ( 25) GGCGGCCTCTGACCCT 1 chr18:59265109-59265609 ( 53) CTGCAGCCTTGACCTC 1 chr7:6373651-6374151 ( 3) TCGATCTCTTGACCTT 1 chr19:8389695-8390195 ( 70) GCTGACCTATGACGTC 1 chr5:6419268-6419768 ( 52) CCTGACTTGTCACCTT 1 chr4:140756863-140757363 ( 9) TGTGACCCCTCCCCCC 1 chr1:228452407-228452907 ( 13) ACCCAACCCTGACCCC 1 chr19:6737913-6738413 ( 32) GATGACCTATGACCCC 1 chr19:40590364-40590864 ( 28) CTCAGCCTCTGGCCCC 1 chr15:77067253-77067753 ( 17) ATTAAACTTTGACCCT 1 chr1:211675734-211676234 ( 1) TTTGCACTCTGGCCCC 1 chr6:26571578-26572078 ( 46) CTTACCCTTTGGCCTT 1 chrX:38061250-38061750 ( 36) TTCCCACCCTGACCTC 1 chr1:6701552-6702052 ( 52) CGCAACCTTTCACCCC 1 chr16:30698965-30699465 ( 47) CTTAACTCTTGACTTC 1 chr17:7844450-7844950 ( 78) GCTGCCTTCTGGCCCT 1 chr2:25078398-25078898 ( 21) ATTTTCTTCTGACCTC 1 chr1:232950442-232950942 ( 30) CTGCTCCCCTGACCGC 1 chr7:6009094-6009594 ( 2) CGTGACCTCTGACGGT 1 chr19:38667025-38667525 ( 62) CCAAGCCTCTGGCCTT 1 chr17:8226713-8227213 ( 37) TTTGTTTTCTGACCCT 1 chr7:100450358-100450858 ( 18) CGTCGCCCTTGGCCTC 1 chr5:396968-397468 ( 53) CGTAGCCCCTGACCAT 1 chr7:73308582-73309082 ( 73) CGTGCTTTTTGACCCC 1 chr11:67266005-67266505 ( 60) CGTGACCTCGGCCCTC 1 chr8:123156773-123157273 ( 16) CCTCGCCCTTGCCCTT 1 chr5:173057131-173057631 ( 5) CCTGTCTCCTCCCCTC 1 chr11:76208714-76209214 ( 6) CGTGCACCCTGACCCG 1 chr5:684812-685312 ( 11) TCAGGACTGTGACCTC 1 chr19:4575291-4575791 ( 37) GGTCCGCTCTGACCCC 1 chr19:11402109-11402609 ( 45) CTGTACTCCTGACACC 1 chr6:142885234-142885734 ( 40) CTTTATCTGTGACCTC 1 chr19:1021419-1021919 ( 65) CTGGCCCTGTGACGTC 1 chr5:176537567-176538067 ( 23) TCTGACCTCTGACGGG 1 chr19:34134441-34134941 ( 60) CCCGGCCCCTGCCCCG 1 chr19:1254474-1254974 ( 78) GTGACCTCGTGACCTT 1 chr14:49586562-49587062 ( 24) CGGGAGTTTTGACCTG 1 chr1:237864259-237864759 ( 26) GGAGAGCGCTGACCTC 1 chr19:1173485-1173985 ( 26) TCGGTATCCTGGCCTT 1 chr17:48626415-48626915 ( 5) CCGGAGCCCTGACGTG 1 chr12:51172719-51173219 ( 60) GCCGACTTCTCGCCCT 1 chr5:17305893-17306393 ( 32) CGCAACTGCTGACATC 1 chr8:143389916-143390416 ( 9) CCAGGCCGCTCACCCC 1 chr19:35995014-35995514 ( 55) GCCGGCTCATGACCGC 1 chr17:42535853-42536353 ( 55) GGCGTCTCGTGACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 8.61662 E= 2.4e-148 -171 76 -68 43 -344 90 -50 36 -144 -82 -28 120 10 -106 118 -303 149 -106 -124 -144 -144 168 -234 -303 -1373 143 -1373 33 -1373 83 -356 110 -303 144 -234 -17 -1373 -356 -514 201 -303 -234 182 -1373 185 -197 -197 -1373 -1373 194 -1373 -1373 -303 183 -282 -503 -403 47 -282 129 -1373 146 -256 1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 136 E= 2.4e-148 0.073529 0.441176 0.161765 0.323529 0.022059 0.485294 0.183824 0.308824 0.088235 0.147059 0.213235 0.551471 0.257353 0.125000 0.588235 0.029412 0.676471 0.125000 0.110294 0.088235 0.088235 0.830882 0.051471 0.029412 0.000000 0.698529 0.000000 0.301471 0.000000 0.463235 0.022059 0.514706 0.029412 0.705882 0.051471 0.213235 0.000000 0.022059 0.007353 0.970588 0.029412 0.051471 0.919118 0.000000 0.867647 0.066176 0.066176 0.000000 0.000000 1.000000 0.000000 0.000000 0.029412 0.926471 0.036765 0.007353 0.014706 0.360294 0.036765 0.588235 0.000000 0.713235 0.044118 0.242647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTGACCYCTGACCYC MEME-1 regular expression -------------------------------------------------------------------------------- [CT][CT][TG][GA]AC[CT][TC][CT]TGACC[TC][CT] -------------------------------------------------------------------------------- Time 355.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 width = 31 sites = 18 llr = 615 E-value = 9.6e-132 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12:::13:::::::a8a1::::2119:1919 pos.-specific C 619816::9a:aaa:1::::9:::::::18: probability G 17:1::7a1::::::1:9:91:899:::::1 matrix T 311294::::a:::::::a1:a:::1a9:1: bits 2.1 * * * * * * 1.9 * ****** * * * * 1.6 * ******** ****** ***** 1.4 * * ******** ****** ****** * Relative 1.2 * * ************************ Entropy 1.0 *** ************************* (49.3 bits) 0.8 ***************************** 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CGCCTCGGCCTCCCAAAGTGCTGGGATTACA consensus TA TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:38786522-38787022 - 55 5.38e-19 GTGATCTGCC CGCCTTGGCCTCCCAAAGTGCTGGGATTACA GGCATGAGTC chr6:28898150-28898650 + 8 1.06e-18 atccgcc cgcctcagcctcccaaagtgctgggattaca ggcgtgagcc chr9:127740658-127741158 + 69 2.29e-18 gtgctccacc caccttggcctcccaaagtgctgggattaca g chr6:30907517-30908017 + 49 2.78e-18 ggtgattcgc cgcctcggcctcccaaagtgctaggattaca ggcgtgagtc chr21:43857427-43857927 - 11 3.96e-18 GTGATCTGCC CACCTCAGCCTCCCAAAGTGCTGGGATTACA GGCATGAGTC chr19:17308696-17309196 + 18 1.18e-17 gtgatccacc cgcgtcggcctcccaaagtgctgggattaca ggcgtgagcc chr12:31078667-31079167 + 66 2.04e-17 gtgatccgcc cgcttcggcctcccaaagtgctaggattaca ggca chr15:72107089-72107589 - 1 2.21e-17 GTGATCTGCC TGCCTCAGCCTCCCAAAGTGCTAGGATTACA chr19:39032983-39033483 - 31 2.85e-17 GCGATCCGCC TGCCTTGGCCTCCCAAAGTGCTGGGATTACG GGCATGAGTC chr6:27684095-27684595 + 49 8.84e-17 gtgatccgca agcctcggcctcccaaagtgctgggattaaa ggcgacagcc chr20:34390748-34391248 + 51 1.04e-16 gtgattcacc cgtcttggcctcccagagtgctgggattaca ggagtgagtc chr1:28373316-28373816 + 20 1.15e-16 atgatccgcc cacctcagcctcccaaagttctgggattaca ggcgtcagcc chr7:6373651-6374151 + 29 1.15e-16 gtgatccgcc ctcctcggcctcccaaagtgctgggtttaca ggcttgagcc chr6:27602218-27602718 + 63 2.28e-16 gtgatccacc tgtcttggcctcccaaagtgctgagattaca ggtgtaa chr1:183032411-183032911 + 23 7.29e-16 gtgatcctct tgccttggcctcccacagtgctgggattata ggcatgagtc chr18:3409073-3409573 - 70 1.43e-15 . TGCTTTGGCCTCCCAGAATGCTGGGATTACA GGCATGAGTC chr21:36210036-36210536 - 13 3.68e-13 TGATTCACCT GCCTCAGGGCTCCCAAAGTGCTGAGATTACA GGCATGAGTC chr1:51637018-51637518 - 14 1.54e-12 GTGATCCACC CACCTCAGCCTCCCAAAGTGGTGGATTACAG GCGTGAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:38786522-38787022 5.4e-19 54_[-2]_15 chr6:28898150-28898650 1.1e-18 7_[+2]_62 chr9:127740658-127741158 2.3e-18 68_[+2]_1 chr6:30907517-30908017 2.8e-18 48_[+2]_21 chr21:43857427-43857927 4e-18 10_[-2]_59 chr19:17308696-17309196 1.2e-17 17_[+2]_52 chr12:31078667-31079167 2e-17 65_[+2]_4 chr15:72107089-72107589 2.2e-17 [-2]_69 chr19:39032983-39033483 2.9e-17 30_[-2]_39 chr6:27684095-27684595 8.8e-17 48_[+2]_21 chr20:34390748-34391248 1e-16 50_[+2]_19 chr1:28373316-28373816 1.1e-16 19_[+2]_50 chr7:6373651-6374151 1.1e-16 28_[+2]_41 chr6:27602218-27602718 2.3e-16 62_[+2]_7 chr1:183032411-183032911 7.3e-16 22_[+2]_47 chr18:3409073-3409573 1.4e-15 69_[-2] chr21:36210036-36210536 3.7e-13 12_[-2]_57 chr1:51637018-51637518 1.5e-12 13_[-2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCTYGGCCTCCCAAAGTGCTGGGATTACA width=31 seqs=18 chr1:38786522-38787022 ( 55) CGCCTTGGCCTCCCAAAGTGCTGGGATTACA 1 chr6:28898150-28898650 ( 8) CGCCTCAGCCTCCCAAAGTGCTGGGATTACA 1 chr9:127740658-127741158 ( 69) CACCTTGGCCTCCCAAAGTGCTGGGATTACA 1 chr6:30907517-30908017 ( 49) CGCCTCGGCCTCCCAAAGTGCTAGGATTACA 1 chr21:43857427-43857927 ( 11) CACCTCAGCCTCCCAAAGTGCTGGGATTACA 1 chr19:17308696-17309196 ( 18) CGCGTCGGCCTCCCAAAGTGCTGGGATTACA 1 chr12:31078667-31079167 ( 66) CGCTTCGGCCTCCCAAAGTGCTAGGATTACA 1 chr15:72107089-72107589 ( 1) TGCCTCAGCCTCCCAAAGTGCTAGGATTACA 1 chr19:39032983-39033483 ( 31) TGCCTTGGCCTCCCAAAGTGCTGGGATTACG 1 chr6:27684095-27684595 ( 49) AGCCTCGGCCTCCCAAAGTGCTGGGATTAAA 1 chr20:34390748-34391248 ( 51) CGTCTTGGCCTCCCAGAGTGCTGGGATTACA 1 chr1:28373316-28373816 ( 20) CACCTCAGCCTCCCAAAGTTCTGGGATTACA 1 chr7:6373651-6374151 ( 29) CTCCTCGGCCTCCCAAAGTGCTGGGTTTACA 1 chr6:27602218-27602718 ( 63) TGTCTTGGCCTCCCAAAGTGCTGAGATTACA 1 chr1:183032411-183032911 ( 23) TGCCTTGGCCTCCCACAGTGCTGGGATTATA 1 chr18:3409073-3409573 ( 70) TGCTTTGGCCTCCCAGAATGCTGGGATTACA 1 chr21:36210036-36210536 ( 13) GCCTCAGGGCTCCCAAAGTGCTGAGATTACA 1 chr1:51637018-51637518 ( 14) CACCTCAGCCTCCCAAAGTGGTGGATTACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 11.3219 E= 9.6e-132 -211 123 -222 21 -11 -222 136 -211 -1081 177 -1081 -111 -1081 158 -222 -53 -1081 -222 -1081 197 -211 110 -1081 69 21 -1081 147 -1081 -1081 -1081 194 -1081 -1081 186 -222 -1081 -1081 194 -1081 -1081 -1081 -1081 -1081 206 -1081 194 -1081 -1081 -1081 194 -1081 -1081 -1081 194 -1081 -1081 206 -1081 -1081 -1081 179 -222 -122 -1081 206 -1081 -1081 -1081 -211 -1081 186 -1081 -1081 -1081 -1081 206 -1081 -1081 186 -211 -1081 186 -222 -1081 -1081 -1081 -1081 206 -53 -1081 168 -1081 -111 -1081 177 -1081 -211 -1081 186 -1081 189 -1081 -1081 -111 -1081 -1081 -1081 206 -211 -1081 -1081 197 197 -222 -1081 -1081 -111 168 -1081 -211 189 -1081 -122 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 18 E= 9.6e-132 0.055556 0.611111 0.055556 0.277778 0.222222 0.055556 0.666667 0.055556 0.000000 0.888889 0.000000 0.111111 0.000000 0.777778 0.055556 0.166667 0.000000 0.055556 0.000000 0.944444 0.055556 0.555556 0.000000 0.388889 0.277778 0.000000 0.722222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.055556 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.944444 0.055556 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.111111 0.000000 0.888889 0.000000 0.055556 0.000000 0.944444 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.055556 0.000000 0.000000 0.944444 0.944444 0.055556 0.000000 0.000000 0.111111 0.833333 0.000000 0.055556 0.888889 0.000000 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTYGGCCTCCCAAAGTGCTGGGATTACA MEME-2 regular expression -------------------------------------------------------------------------------- [CT][GA]CCT[CT][GA]GCCTCCCAAAGTGCTGGGATTACA -------------------------------------------------------------------------------- Time 682.26 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGACTCAY MEME-3 width = 9 sites = 108 llr = 1072 E-value = 4.3e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::a::1a: pos.-specific C 2:::a:9:3 probability G 4:a:::::2 matrix T 1a:::a::5 bits 2.1 * * * * 1.9 ***** * 1.6 ***** * 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******* (14.3 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ********* 0.0 --------- Multilevel GTGACTCAT consensus A C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr7:150360022-150360522 + 46 3.64e-06 acaAaaataa gtgactcat cctcagtgag chr1:41870101-41870601 - 29 3.64e-06 TAAGTCGAAT GTGACTCAT ACTAGGGGGT chr7:133492058-133492558 + 17 3.64e-06 gttggacatg gtgactcat tctgtgtggt chr6:90368929-90369429 + 48 3.64e-06 ACTCAAGGTG GTGACTCAT TCAGCAACTA chr19:39032983-39033483 + 19 3.64e-06 gctgggtgcg gtgactcat gcccgtaatc chr13:87123912-87124412 - 36 3.64e-06 ATTATAAATG GTGACTCAT GTGGTTACAG chr20:46085090-46085590 - 17 3.64e-06 GCCAGGCATG GTGACTCAT GCCTATAATC chr21:26795942-26796442 + 25 3.64e-06 TAAATAAACA GTGACTCAT TCTGTGTGAT chr1:38786522-38787022 + 43 3.64e-06 gccgggcacg gtgactcat gcctgtaatc chr6:27633135-27633635 + 40 3.64e-06 atgtgaacct gtgactcat caagcagctg chr1:183032411-183032911 - 57 3.64e-06 GCCAGGCATG GTGACTCAT GCCTATAATC chr1:235504713-235505213 + 56 3.64e-06 GCCTGGAGCG GTGACTCAT CAGGGATTAG chr19:50896568-50897068 + 50 3.64e-06 AAGCTGCAGG GTGACTCAT ACAATGTGGT chr3:182365135-182365635 + 46 3.64e-06 CAGCGTGAAT GTGACTCAT TAAAACAGAC chr19:47253367-47253867 - 20 3.64e-06 GGCCAGTGCG GTGACTCAT GCCTGTAATC chr21:36210036-36210536 + 1 3.64e-06 . gtgactcat gcctgtaatc chr5:99020159-99020659 + 13 3.64e-06 TGTAACTGTG GTGACTCAT CACATAAAAC chr2:25078398-25078898 - 77 3.64e-06 AGTTATTTCA GTGACTCAT CTTTTCTTCT chr18:3409073-3409573 + 58 3.64e-06 gccaggcacg gtgactcat gcctgtaatc chr17:45320815-45321315 - 69 7.00e-06 CCACATTCAG ATGACTCAT CAGCCACTTT chr19:38543974-38544474 - 5 7.00e-06 CACATCTGCG ATGACTCAT CAGA chr17:67978495-67978995 + 64 7.00e-06 GAGCAAGAAA ATGACTCAT ACATTAGATA chr6:149233319-149233819 + 81 7.00e-06 tgtttaccaa atgaCTCAT GGATCTGACA chr18:50870140-50870640 - 53 7.00e-06 GCACACAGAA ATGACTCAT TTGAGTTTTA chr22:40711468-40711968 - 34 7.00e-06 TAGCCTCTCG ATGACTCAT GTCTCTGTAA chr1:205734332-205734832 + 47 7.00e-06 GCCATTCATG ATGACTCAT AATGACTCAT chr22:24727092-24727592 - 14 7.00e-06 GTAATTACAA ATGACTCAT TTGGAAAACT chr17:27353541-27354041 + 66 7.00e-06 CCAGGGAGTG ATGACTCAT TTCCTTTCCT chr10:85642660-85643160 + 31 7.00e-06 TGTTTCTCTA ATGACTCAT CTCCAGGTTT chr1:85297855-85298355 + 51 7.00e-06 ACTTAATGGT ATGACTCAT TTAAATGGAA chr11:36149652-36150152 + 20 7.00e-06 actgttcctc atgactcat gttcctcatg chr4:185912718-185913218 + 85 7.00e-06 AATTCAAAGA ATGACTCAT GGAAAAT chr16:74577932-74578432 + 58 7.00e-06 TGAGTATGTG ATGACTCAT GACTGATGAA chr7:101138373-101138873 + 59 1.09e-05 CAATTACAGG GTGACTCAC AGCCGCATTG chr7:74079297-74079797 + 78 1.09e-05 gccgggagtg gtgactcac actgtaatcc chr10:3314620-3315120 + 44 1.09e-05 GAAGGGGAGG GTGACTCAC AGAGAGAGGG chr15:58332053-58332553 + 88 1.09e-05 GTGACGAAGC GTGACTCAC CACT chr5:125485095-125485595 + 14 1.09e-05 AAGTCACTCC GTGACTCAC ACGAATGGCT chr8:125430002-125430502 - 80 1.09e-05 CCGCCTCCTG GTGACTCAC GCTGTATACA chr22:49970633-49971133 + 82 1.09e-05 CTGCCACCGC GTGACTCAC CCTCCCTTCA chrX:38061250-38061750 + 75 1.09e-05 GAGTCAGAAG GTGACTCAC TCTCTAATCA chr6:30907517-30908017 - 83 1.09e-05 CCGGGCGCG GTGACTCAC GCCTGTAATC chr1:153566465-153566965 + 28 1.09e-05 TCAGCCCTAA GTGACTCAC CCGAGGTTCC chr3:100002792-100003292 + 77 1.09e-05 TGATGTCTGT GTGACTCAC ATACTGAGGT chr20:34390748-34391248 - 85 1.09e-05 GGGCGTG GTGACTCAC TCCTGTAATC chr2:66364341-66364841 + 40 1.09e-05 TCACAACGAA GTGACTCAC CTCAGAAGAA chr13:100363832-10036433 - 16 1.09e-05 CACATAAACA GTGACTCAC AAAGCAAATA chr11:129143285-12914378 + 42 1.09e-05 ctacccgccg gtgactcac ttgggagtca chr1:236097026-236097526 + 9 2.22e-05 ggccaggg gTGACTCAG AATGgagcag chr8:630777-631277 + 86 2.22e-05 ATTGACAGAG CTGACTCAT ACCCTC chr19:36139805-36140305 - 59 2.22e-05 GGCGGGGCCG GTGACTCAG GCCGCAACTC chr12:114914164-11491466 - 89 2.22e-05 GAT ATGACTCAC TGGATCATAA chr19:11344340-11344840 - 90 2.22e-05 TG GTGACTCAG CTGAGCTGGC chr19:40920932-40921432 - 64 2.22e-05 TTTACACACA GTGACTCAG TGTTTACCCT chr1:155000886-155001386 - 20 2.22e-05 GCGCCGGGCC GTGACTCAG CCTCGGGGCC chr15:67792434-67792934 - 3 2.22e-05 TGACTGCAGG GTGACTCAG AA chr6:111568260-111568760 + 92 2.22e-05 ACTGGAATGG GTGACTCAG chr1:28884847-28885347 - 67 2.22e-05 CTGCCTGTGG GTGACTCAG CAGTGCCAGT chr3:171192168-171192668 - 81 2.22e-05 CATTTCAGAC ATGACTCAC TGGAAGAGAC chr3:9976982-9977482 - 20 2.22e-05 GTTTTTAAAT GTGACTCAG CTAAAGTGTC chr19:13846896-13847396 + 15 2.22e-05 CACCTCAGGA ATGACTCAC CACCCACCCA chr12:124518911-12451941 + 82 2.22e-05 aattagctgt gtgactcag agacaagtct chr6:47134639-47135139 + 20 2.22e-05 TTCTCAGGAA ATGACTCAC ACCAAGGTAT chr4:1043527-1044027 + 35 2.22e-05 TCCGCGAGTG ATGACTCAC ACCCATCACT chr20:50165935-50166435 + 64 2.22e-05 ATAACTGCTT CTGACTCAT GCGTGCTTGG chr1:183060408-183060908 + 16 2.22e-05 gtttacatgt ctgactcat aattatcatt chr21:45318774-45319274 + 23 2.22e-05 GAGGTTTTCC ATGACTCAC TTCAGAGCCA chr12:122400403-12240090 + 40 2.22e-05 TTACGGAATG ATGACTCAC ACGCATTCCT chr22:19984229-19984729 - 85 2.22e-05 TCACTGG CTGACTCAT GCACCTGCCA chr17:1115057-1115557 + 10 2.22e-05 CCCCAGCTG ATGACTCAC CCATCTCACT chr12:71626723-71627223 - 40 2.22e-05 GTTTTCTTTT CTGACTCAT TTACTGAGTG chr10:72320641-72321141 - 71 2.22e-05 CCACCGTTAT CTGACTCAT CCCCTGACAG chr6:158040305-158040805 + 80 2.22e-05 GATAAGGCCA CTGACTCAT TCAGGGAGGT chr7:111092806-111093306 - 47 2.22e-05 ATGTTGTAAA CTGACTCAT TTTTTTGACA chr1:80054092-80054592 + 5 2.58e-05 cagc atgactcag cgagtttgga chr2:46481528-46482028 - 64 2.58e-05 AGAACTGAGG ATGACTCAG AGCTGGGAAG chr1:234700136-234700636 + 63 2.58e-05 AGGTTAATGG ATGACTCAG AGGCATTATT chr15:71747481-71747981 + 46 2.58e-05 gcaaaacttt atgactcag aaacaaacca chr1:10528325-10528825 - 21 2.58e-05 AAGGAATGTA ATGACTCAG TGTCCAAGAT chr1:228452407-228452907 + 53 2.97e-05 tgaccccttc ctgactcac cagctaaccc chr1:156660096-156660596 - 22 2.97e-05 TCAACCTCCG CTGACTCAC AGCCCCCAGG chr5:179818819-179819319 + 89 2.97e-05 TCATGGGACG CTGACTCAC TGC chr16:15590886-15591386 - 30 2.97e-05 ATAACAGGAT CTGACTCAC TGTTTCAAGT chr19:4575291-4575791 - 63 2.97e-05 TTCCTGAGCC CTGACTCAC CAGGACTTGT chr6:43321920-43322420 - 5 3.70e-05 TATGAGTTCT TTGACTCAT TGAT chr15:74546040-74546540 - 53 3.70e-05 CTGCTATGAG CTGACTCAG CGGCCGGTAT chr19:1254474-1254974 + 42 3.70e-05 CTCTTGATCT TTGACTCAT GGGTCATCTC chr1:228902950-228903450 - 77 3.70e-05 AGCTCTCTGG TTGACTCAT GAGGATTGGG chr13:110870153-11087065 + 46 3.70e-05 TGCTCCTAGA CTGACTCAG CGCTGGTCAT chr14:101073135-10107363 + 2 3.70e-05 G CTGACTCAG ACACAGCCCC chr12:121799839-12180033 - 63 3.70e-05 GTTGAACCTT CTGACTCAG CCACCCCCGG chr7:80876852-80877352 - 66 3.70e-05 CTTTACAAGG CTGACTCAG AAGCAAACTG chr21:34845670-34846170 - 28 3.70e-05 TTAATACTGT TTGACTCAT TCTGTGTTAC chr19:16279154-16279654 - 35 3.70e-05 GCGTGTAACA TTGACTCAT ATACAAATCA chr5:124661294-124661794 + 78 4.04e-05 CTAATGAAGT GTGACTAAT AGTGCTCTCC chr10:20885601-20886101 - 54 4.04e-05 ATGGGTGACT GTGACTAAT ATGCCCTTTA chr6:137853562-137854062 - 27 4.04e-05 TGGACTATGT GTGACTAAT CTAATAAGAT chr19:8240277-8240777 - 91 4.40e-05 A TTGACTCAC TCACCCGCCC chr6:21748593-21749093 + 65 4.40e-05 TTTTATTTTA TTGACTCAC TAAATTCTTA chr5:136123163-136123663 - 70 4.71e-05 TATTTGTATA ATGACTAAT GCTTCTGTGG chr19:43201303-43201803 + 35 4.71e-05 attcatacct atgactaat ggctcagcca chr16:10738686-10739186 - 43 4.71e-05 CAAGACCAGC ATGACTAAT AGTGTGAAAC chr12:68808687-68809187 + 11 5.44e-05 AGTGGGCAGG TTGACTCAG CTTTTCCTCT chr5:14156521-14157021 - 68 6.48e-05 TTTTGTTTGG ATGACTAAC TGACAAGGCA chr19:32373686-32374186 - 80 6.48e-05 ATCATGCCCA GTGACTAAG CAAGCCTTTC chr4:119730111-119730611 - 23 6.48e-05 TTGCTTTTGC CTGACTAAT GGCAGTTGTA chr5:37738045-37738545 + 72 6.81e-05 TCATGTGCTG ATGACTAAG TAATGCAAGT chr1:51637018-51637518 + 80 7.18e-05 caagaacagc ctgactaac atggtgaatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:150360022-150360522 3.6e-06 45_[+3]_46 chr1:41870101-41870601 3.6e-06 28_[-3]_63 chr7:133492058-133492558 3.6e-06 16_[+3]_75 chr6:90368929-90369429 3.6e-06 47_[+3]_44 chr19:39032983-39033483 3.6e-06 18_[+3]_73 chr13:87123912-87124412 3.6e-06 35_[-3]_56 chr20:46085090-46085590 3.6e-06 16_[-3]_75 chr21:26795942-26796442 3.6e-06 24_[+3]_67 chr1:38786522-38787022 3.6e-06 42_[+3]_49 chr6:27633135-27633635 3.6e-06 39_[+3]_52 chr1:183032411-183032911 3.6e-06 56_[-3]_35 chr1:235504713-235505213 3.6e-06 55_[+3]_36 chr19:50896568-50897068 3.6e-06 49_[+3]_42 chr3:182365135-182365635 3.6e-06 45_[+3]_46 chr19:47253367-47253867 3.6e-06 19_[-3]_72 chr21:36210036-36210536 3.6e-06 [+3]_91 chr5:99020159-99020659 3.6e-06 12_[+3]_79 chr2:25078398-25078898 3.6e-06 76_[-3]_15 chr18:3409073-3409573 3.6e-06 57_[+3]_34 chr17:45320815-45321315 7e-06 68_[-3]_23 chr19:38543974-38544474 7e-06 4_[-3]_87 chr17:67978495-67978995 7e-06 63_[+3]_28 chr6:149233319-149233819 7e-06 80_[+3]_11 chr18:50870140-50870640 7e-06 52_[-3]_39 chr22:40711468-40711968 7e-06 33_[-3]_58 chr1:205734332-205734832 7e-06 46_[+3]_45 chr22:24727092-24727592 7e-06 13_[-3]_78 chr17:27353541-27354041 7e-06 65_[+3]_26 chr10:85642660-85643160 7e-06 30_[+3]_61 chr1:85297855-85298355 7e-06 50_[+3]_41 chr11:36149652-36150152 7e-06 19_[+3]_72 chr4:185912718-185913218 7e-06 84_[+3]_7 chr16:74577932-74578432 7e-06 57_[+3]_34 chr7:101138373-101138873 1.1e-05 58_[+3]_33 chr7:74079297-74079797 1.1e-05 77_[+3]_14 chr10:3314620-3315120 1.1e-05 43_[+3]_48 chr15:58332053-58332553 1.1e-05 87_[+3]_4 chr5:125485095-125485595 1.1e-05 13_[+3]_78 chr8:125430002-125430502 1.1e-05 79_[-3]_12 chr22:49970633-49971133 1.1e-05 81_[+3]_10 chrX:38061250-38061750 1.1e-05 74_[+3]_17 chr6:30907517-30908017 1.1e-05 82_[-3]_9 chr1:153566465-153566965 1.1e-05 27_[+3]_64 chr3:100002792-100003292 1.1e-05 76_[+3]_15 chr20:34390748-34391248 1.1e-05 84_[-3]_7 chr2:66364341-66364841 1.1e-05 39_[+3]_52 chr13:100363832-10036433 1.1e-05 15_[-3]_76 chr11:129143285-12914378 1.1e-05 41_[+3]_50 chr1:236097026-236097526 2.2e-05 8_[+3]_83 chr8:630777-631277 2.2e-05 85_[+3]_6 chr19:36139805-36140305 2.2e-05 58_[-3]_33 chr12:114914164-11491466 2.2e-05 88_[-3]_3 chr19:11344340-11344840 2.2e-05 89_[-3]_2 chr19:40920932-40921432 2.2e-05 63_[-3]_28 chr1:155000886-155001386 2.2e-05 19_[-3]_72 chr15:67792434-67792934 2.2e-05 2_[-3]_89 chr6:111568260-111568760 2.2e-05 91_[+3] chr1:28884847-28885347 2.2e-05 66_[-3]_25 chr3:171192168-171192668 2.2e-05 80_[-3]_11 chr3:9976982-9977482 2.2e-05 19_[-3]_72 chr19:13846896-13847396 2.2e-05 14_[+3]_77 chr12:124518911-12451941 2.2e-05 81_[+3]_10 chr6:47134639-47135139 2.2e-05 19_[+3]_72 chr4:1043527-1044027 2.2e-05 34_[+3]_57 chr20:50165935-50166435 2.2e-05 63_[+3]_28 chr1:183060408-183060908 2.2e-05 15_[+3]_76 chr21:45318774-45319274 2.2e-05 22_[+3]_69 chr12:122400403-12240090 2.2e-05 39_[+3]_52 chr22:19984229-19984729 2.2e-05 84_[-3]_7 chr17:1115057-1115557 2.2e-05 9_[+3]_82 chr12:71626723-71627223 2.2e-05 39_[-3]_52 chr10:72320641-72321141 2.2e-05 70_[-3]_21 chr6:158040305-158040805 2.2e-05 79_[+3]_12 chr7:111092806-111093306 2.2e-05 46_[-3]_45 chr1:80054092-80054592 2.6e-05 4_[+3]_87 chr2:46481528-46482028 2.6e-05 63_[-3]_28 chr1:234700136-234700636 2.6e-05 62_[+3]_29 chr15:71747481-71747981 2.6e-05 45_[+3]_46 chr1:10528325-10528825 2.6e-05 20_[-3]_71 chr1:228452407-228452907 3e-05 52_[+3]_39 chr1:156660096-156660596 3e-05 21_[-3]_70 chr5:179818819-179819319 3e-05 88_[+3]_3 chr16:15590886-15591386 3e-05 29_[-3]_62 chr19:4575291-4575791 3e-05 62_[-3]_29 chr6:43321920-43322420 3.7e-05 4_[-3]_87 chr15:74546040-74546540 3.7e-05 52_[-3]_39 chr19:1254474-1254974 3.7e-05 41_[+3]_50 chr1:228902950-228903450 3.7e-05 76_[-3]_15 chr13:110870153-11087065 3.7e-05 45_[+3]_46 chr14:101073135-10107363 3.7e-05 1_[+3]_90 chr12:121799839-12180033 3.7e-05 62_[-3]_29 chr7:80876852-80877352 3.7e-05 65_[-3]_26 chr21:34845670-34846170 3.7e-05 27_[-3]_64 chr19:16279154-16279654 3.7e-05 34_[-3]_57 chr5:124661294-124661794 4e-05 77_[+3]_14 chr10:20885601-20886101 4e-05 53_[-3]_38 chr6:137853562-137854062 4e-05 26_[-3]_65 chr19:8240277-8240777 4.4e-05 90_[-3]_1 chr6:21748593-21749093 4.4e-05 64_[+3]_27 chr5:136123163-136123663 4.7e-05 69_[-3]_22 chr19:43201303-43201803 4.7e-05 34_[+3]_57 chr16:10738686-10739186 4.7e-05 42_[-3]_49 chr12:68808687-68809187 5.4e-05 10_[+3]_81 chr5:14156521-14157021 6.5e-05 67_[-3]_24 chr19:32373686-32374186 6.5e-05 79_[-3]_12 chr4:119730111-119730611 6.5e-05 22_[-3]_69 chr5:37738045-37738545 6.8e-05 71_[+3]_20 chr1:51637018-51637518 7.2e-05 79_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGACTCAY width=9 seqs=108 chr7:150360022-150360522 ( 46) GTGACTCAT 1 chr1:41870101-41870601 ( 29) GTGACTCAT 1 chr7:133492058-133492558 ( 17) GTGACTCAT 1 chr6:90368929-90369429 ( 48) GTGACTCAT 1 chr19:39032983-39033483 ( 19) GTGACTCAT 1 chr13:87123912-87124412 ( 36) GTGACTCAT 1 chr20:46085090-46085590 ( 17) GTGACTCAT 1 chr21:26795942-26796442 ( 25) GTGACTCAT 1 chr1:38786522-38787022 ( 43) GTGACTCAT 1 chr6:27633135-27633635 ( 40) GTGACTCAT 1 chr1:183032411-183032911 ( 57) GTGACTCAT 1 chr1:235504713-235505213 ( 56) GTGACTCAT 1 chr19:50896568-50897068 ( 50) GTGACTCAT 1 chr3:182365135-182365635 ( 46) GTGACTCAT 1 chr19:47253367-47253867 ( 20) GTGACTCAT 1 chr21:36210036-36210536 ( 1) GTGACTCAT 1 chr5:99020159-99020659 ( 13) GTGACTCAT 1 chr2:25078398-25078898 ( 77) GTGACTCAT 1 chr18:3409073-3409573 ( 58) GTGACTCAT 1 chr17:45320815-45321315 ( 69) ATGACTCAT 1 chr19:38543974-38544474 ( 5) ATGACTCAT 1 chr17:67978495-67978995 ( 64) ATGACTCAT 1 chr6:149233319-149233819 ( 81) ATGACTCAT 1 chr18:50870140-50870640 ( 53) ATGACTCAT 1 chr22:40711468-40711968 ( 34) ATGACTCAT 1 chr1:205734332-205734832 ( 47) ATGACTCAT 1 chr22:24727092-24727592 ( 14) ATGACTCAT 1 chr17:27353541-27354041 ( 66) ATGACTCAT 1 chr10:85642660-85643160 ( 31) ATGACTCAT 1 chr1:85297855-85298355 ( 51) ATGACTCAT 1 chr11:36149652-36150152 ( 20) ATGACTCAT 1 chr4:185912718-185913218 ( 85) ATGACTCAT 1 chr16:74577932-74578432 ( 58) ATGACTCAT 1 chr7:101138373-101138873 ( 59) GTGACTCAC 1 chr7:74079297-74079797 ( 78) GTGACTCAC 1 chr10:3314620-3315120 ( 44) GTGACTCAC 1 chr15:58332053-58332553 ( 88) GTGACTCAC 1 chr5:125485095-125485595 ( 14) GTGACTCAC 1 chr8:125430002-125430502 ( 80) GTGACTCAC 1 chr22:49970633-49971133 ( 82) GTGACTCAC 1 chrX:38061250-38061750 ( 75) GTGACTCAC 1 chr6:30907517-30908017 ( 83) GTGACTCAC 1 chr1:153566465-153566965 ( 28) GTGACTCAC 1 chr3:100002792-100003292 ( 77) GTGACTCAC 1 chr20:34390748-34391248 ( 85) GTGACTCAC 1 chr2:66364341-66364841 ( 40) GTGACTCAC 1 chr13:100363832-10036433 ( 16) GTGACTCAC 1 chr11:129143285-12914378 ( 42) GTGACTCAC 1 chr1:236097026-236097526 ( 9) GTGACTCAG 1 chr8:630777-631277 ( 86) CTGACTCAT 1 chr19:36139805-36140305 ( 59) GTGACTCAG 1 chr12:114914164-11491466 ( 89) ATGACTCAC 1 chr19:11344340-11344840 ( 90) GTGACTCAG 1 chr19:40920932-40921432 ( 64) GTGACTCAG 1 chr1:155000886-155001386 ( 20) GTGACTCAG 1 chr15:67792434-67792934 ( 3) GTGACTCAG 1 chr6:111568260-111568760 ( 92) GTGACTCAG 1 chr1:28884847-28885347 ( 67) GTGACTCAG 1 chr3:171192168-171192668 ( 81) ATGACTCAC 1 chr3:9976982-9977482 ( 20) GTGACTCAG 1 chr19:13846896-13847396 ( 15) ATGACTCAC 1 chr12:124518911-12451941 ( 82) GTGACTCAG 1 chr6:47134639-47135139 ( 20) ATGACTCAC 1 chr4:1043527-1044027 ( 35) ATGACTCAC 1 chr20:50165935-50166435 ( 64) CTGACTCAT 1 chr1:183060408-183060908 ( 16) CTGACTCAT 1 chr21:45318774-45319274 ( 23) ATGACTCAC 1 chr12:122400403-12240090 ( 40) ATGACTCAC 1 chr22:19984229-19984729 ( 85) CTGACTCAT 1 chr17:1115057-1115557 ( 10) ATGACTCAC 1 chr12:71626723-71627223 ( 40) CTGACTCAT 1 chr10:72320641-72321141 ( 71) CTGACTCAT 1 chr6:158040305-158040805 ( 80) CTGACTCAT 1 chr7:111092806-111093306 ( 47) CTGACTCAT 1 chr1:80054092-80054592 ( 5) ATGACTCAG 1 chr2:46481528-46482028 ( 64) ATGACTCAG 1 chr1:234700136-234700636 ( 63) ATGACTCAG 1 chr15:71747481-71747981 ( 46) ATGACTCAG 1 chr1:10528325-10528825 ( 21) ATGACTCAG 1 chr1:228452407-228452907 ( 53) CTGACTCAC 1 chr1:156660096-156660596 ( 22) CTGACTCAC 1 chr5:179818819-179819319 ( 89) CTGACTCAC 1 chr16:15590886-15591386 ( 30) CTGACTCAC 1 chr19:4575291-4575791 ( 63) CTGACTCAC 1 chr6:43321920-43322420 ( 5) TTGACTCAT 1 chr15:74546040-74546540 ( 53) CTGACTCAG 1 chr19:1254474-1254974 ( 42) TTGACTCAT 1 chr1:228902950-228903450 ( 77) TTGACTCAT 1 chr13:110870153-11087065 ( 46) CTGACTCAG 1 chr14:101073135-10107363 ( 2) CTGACTCAG 1 chr12:121799839-12180033 ( 63) CTGACTCAG 1 chr7:80876852-80877352 ( 66) CTGACTCAG 1 chr21:34845670-34846170 ( 28) TTGACTCAT 1 chr19:16279154-16279654 ( 35) TTGACTCAT 1 chr5:124661294-124661794 ( 78) GTGACTAAT 1 chr10:20885601-20886101 ( 54) GTGACTAAT 1 chr6:137853562-137854062 ( 27) GTGACTAAT 1 chr19:8240277-8240777 ( 91) TTGACTCAC 1 chr6:21748593-21749093 ( 65) TTGACTCAC 1 chr5:136123163-136123663 ( 70) ATGACTAAT 1 chr19:43201303-43201803 ( 35) ATGACTAAT 1 chr16:10738686-10739186 ( 43) ATGACTAAT 1 chr12:68808687-68809187 ( 11) TTGACTCAG 1 chr5:14156521-14157021 ( 68) ATGACTAAC 1 chr19:32373686-32374186 ( 80) GTGACTAAG 1 chr4:119730111-119730611 ( 23) CTGACTAAT 1 chr5:37738045-37738545 ( 72) ATGACTAAG 1 chr1:51637018-51637518 ( 80) CTGACTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 10.6471 E= 4.3e-076 30 -49 77 -170 -1340 -1340 -1340 206 -1340 -1340 194 -1340 206 -1340 -1340 -1340 -1340 194 -1340 -1340 -1340 -1340 -1340 206 -124 179 -1340 -1340 206 -1340 -1340 -1340 -1340 19 -29 103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 108 E= 4.3e-076 0.296296 0.185185 0.444444 0.074074 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.101852 0.898148 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.296296 0.212963 0.490741 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAY MEME-3 regular expression -------------------------------------------------------------------------------- [GA]TGACTCA[TCG] -------------------------------------------------------------------------------- Time 981.31 secs. ******************************************************************************** ******************************************************************************** MOTIF KTKTKTKTKTKTKTKT MEME-4 width = 16 sites = 58 llr = 719 E-value = 4.8e-061 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:::1:1:1:::2:1: pos.-specific C :1::1::11::11:1: probability G 4:5:416:5:614:5: matrix T 495949484a483a3a bits 2.1 * * * 1.9 * * * * 1.6 * * * * * 1.4 * * * * * * Relative 1.2 * * * * * * * Entropy 1.0 *** * * * * * * (17.9 bits) 0.8 *** *** *** * * 0.6 **** *** *** * * 0.4 **** ******* *** 0.2 **************** 0.0 ---------------- Multilevel GTGTGTGTGTGTGTGT consensus T T T T T T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr11:73376989-73377489 + 83 1.63e-09 tggtgtcagt gtgtgtgtgtgtgtgt gt chr12:57111954-57112454 - 1 1.63e-09 ACGTGTGTGT GTGTGTGTGTGTGTGT chr10:101442026-10144252 + 72 1.63e-09 ctgtgtgtat gtgtgtgtgtgtgtgt gtgtgtAAAT chr6:111568260-111568760 + 1 1.63e-09 . gtgtgtgtgtgtgtgt gtgtgtgtgt chr1:28884847-28885347 - 2 1.63e-09 GTGTGTGTGT GTGTGTGTGTGTGTGT G chr8:37701106-37701606 + 75 1.63e-09 CAGACAGGGC gtgtgtgtgtgtgtgt gtgtgtgtgt chr12:124518911-12451941 - 1 1.63e-09 TGGCCTGTGT GTGTGTGTGTGTGTGT chr15:40092240-40092740 - 15 1.63e-09 AAGGGTGTGT GTGTGTGTGTGTGTGT GAGTCTGTGT chr20:25862677-25863177 - 1 1.63e-09 AGGACTCTGT GTGTGTGTGTGTGTGT chr17:8226713-8227213 - 53 7.61e-09 AGTGGGTGGC TTTTTTTTGTGTGTGT TTTGTTTTCT chr6:28898150-28898650 + 80 1.05e-08 TGTTTATCCA Gtttttgtttgtttgt tttga chr6:133248608-133249108 + 69 1.05e-08 ttttgttttt ttttttgtttgtttgt ttttGCATTA chr13:100363832-10036433 + 59 1.05e-08 GGGGTTTTTG GTTTTTGTTTGTTTGT TGAAGAAATA chr7:150360022-150360522 - 28 2.80e-08 TGAGTCACTT ATTTTTGTGTGTGTGT GGTGTTTGTG chr5:93582547-93583047 + 39 3.37e-08 gtgtgtgtgt atgtgtgtgtgtgtgt gACCATAGAC chr17:75368239-75368739 + 83 7.63e-08 tgcgtcaggc GTTTGttttttttttt gt chr19:17308696-17309196 + 76 7.63e-08 ccggcTGGCt tttttttttttttttt gagactgat chr19:37595005-37595505 + 3 1.46e-07 gt gtgtgtgcgtgtgtgt gtgggtctgt chr1:198763247-198763747 + 61 2.16e-07 TTTGGATCAC ATTTCTGTGTGTTTGT CAGACGACCC chr16:12120443-12120943 + 22 2.75e-07 ATCTGGCTGT GTGTCTGTGTTTATGT TTGGGTCCCT chr10:112793338-11279383 + 22 2.75e-07 ACTTAATCTC TCTTTTGTTTGTTTGT CTTGTGGAAC chr6:75413289-75413789 + 17 2.75e-07 gttttgtatg ttgtttgtttTTCTTT ACCCCAGGGA chr17:59291713-59292213 + 21 3.10e-07 TTACAGCCTG Gtttgtttatttgttt tgagaccaga chr1:183032411-183032911 + 79 5.79e-07 gcctggcctc ttttttttcttttttT GAATTT chr18:3409073-3409573 - 2 5.79e-07 TTTTATAGCT TTGTTTGTTTTGTTTT G chr1:151494721-151495221 + 49 6.96e-07 TGGGTGGGAA GTTTTTTTTTTTTTCT GCCCACTTCT chr1:61091427-61091927 + 10 7.74e-07 GGCAAATGG TTTTCTTTGTGGGTGT GTAACAGTAA chr7:116218169-116218669 + 81 8.51e-07 TGTTAGGTGG ATTTTTGTTTTTATAT GACC chr12:54033423-54033923 - 17 1.03e-06 TGGCCGCAGG TTTTTTTTCTTTATTT GCCCCGCATG chr17:32015515-32016015 + 5 1.14e-06 GTAC TTTTGTTTATGGGTGT CATTGGTTGA chr6:43321920-43322420 - 54 1.37e-06 TTTTGAAGTG TTGTGGTTTTGTTTTT ATTCATCTCA chr3:190424480-190424980 - 85 1.50e-06 . TTTTTTTTTTTGGTAT TTTTAGTAGA chr1:167658578-167659078 + 28 1.64e-06 ttttatggta ttttttttttgtctct agtgttttgc chr10:50463964-50464464 - 21 1.80e-06 CAGGATAATC TCTTGTTTGTTTTTAT TGTGGTAAAA chr1:237166688-237167188 + 58 1.96e-06 GAAGTTAAAT GCTTTTGTTTGGGTTT GAATGAAAAT chr1:205734332-205734832 - 4 2.32e-06 ATCACAGATC TTTTATTTATTTATTT TAT chr4:119730111-119730611 - 34 2.32e-06 CACAAACATT GTTTATGTTTGCTTTT GCCTGACTAA chr3:194134809-194135309 - 46 2.52e-06 GGGAGGATGT GTGTGTGCGTGCGTGT GTGAGTGAGT chr1:61692280-61692780 - 54 2.52e-06 CTCTCTTTCT TTTTTTTCTTTTCTTT CTCTTTCTTT chr7:120806678-120807178 - 32 2.52e-06 GTCATGCCTG ATTTGTTTTTATGTGT TATGGGCATT chr15:81888762-81889262 + 35 2.52e-06 CTTAGTTTTA TTGTTTTGTTGTGTTT TATTGACTAG chr2:202822384-202822884 - 69 2.72e-06 GGCATGACAT TTGTTGTTGTTTATTT ACTTTAAGCT chr6:11270217-11270717 - 67 2.93e-06 TGTCATAAAA GTGTCTGCTTGTTTAT TTTAGGTAGA chr1:85297855-85298355 - 79 2.93e-06 TAATCC TCGTGTATGTGTTTTT AAAAGTCCGT chr8:125430002-125430502 + 59 3.43e-06 AGCCCGGCCT GTGAGTGTGTGTGTAT ACAGCGTGAG chr6:131816139-131816639 - 37 3.43e-06 AAGGTTTCTT GTTTATTTTTTCTTGT TTGGGGGGTA chr19:36214287-36214787 - 21 3.43e-06 CGTTCTGAAT GTGTCTTTGTGGCTGT GTGGCTGGGT chr1:41870101-41870601 - 77 3.99e-06 AATCAGTA TTGTGTGTGTGATTAT TTAATTGCAA chr19:43572070-43572570 - 22 3.99e-06 CTCTGTCAAC ATGTAGGTGTTTGTGT AGAGGGAGGG chr6:138088212-138088712 - 64 3.99e-06 GTGTGTGAGC ATGCGTGTGTGTATTT AGAGATAGTT chr1:156660096-156660596 + 84 6.23e-06 CCCAGCGCCC GCgtgtgcctgtgtgt g chr6:137853562-137854062 + 82 6.23e-06 CATGCTTTAa ttttttaagtgtgtgt tat chr6:56529512-56530012 - 76 7.16e-06 TTTTGTTTT TCTTCTTTATTTTTTT AAACTTTGCT chr2:66364341-66364841 - 75 8.20e-06 CTAAATGCGG TTGTTTTTATCTATGT GGAGAACATT chr9:125887128-125887628 - 49 9.36e-06 GATTAGCATA GCGTGTGCTTTTCTTT AGCCATCAAT chr10:68153543-68154043 + 50 1.64e-05 AACAGATTAT TTGCATATGTTTGTTT GGCTTCTTCC chr17:48407054-48407554 - 82 1.84e-05 CTA ATTTCTGCTTTTATCT TTATTGTTTC chr19:34218147-34218647 + 63 2.31e-05 ACTTATCTAG ATTTATGTCTGGATAT GCTGCTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:73376989-73377489 1.6e-09 82_[+4]_2 chr12:57111954-57112454 1.6e-09 [-4]_84 chr10:101442026-10144252 1.6e-09 71_[+4]_13 chr6:111568260-111568760 1.6e-09 [+4]_84 chr1:28884847-28885347 1.6e-09 1_[-4]_83 chr8:37701106-37701606 1.6e-09 74_[+4]_10 chr12:124518911-12451941 1.6e-09 [-4]_84 chr15:40092240-40092740 1.6e-09 14_[-4]_70 chr20:25862677-25863177 1.6e-09 [-4]_84 chr17:8226713-8227213 7.6e-09 52_[-4]_32 chr6:28898150-28898650 1.1e-08 79_[+4]_5 chr6:133248608-133249108 1.1e-08 68_[+4]_16 chr13:100363832-10036433 1.1e-08 58_[+4]_26 chr7:150360022-150360522 2.8e-08 27_[-4]_57 chr5:93582547-93583047 3.4e-08 38_[+4]_46 chr17:75368239-75368739 7.6e-08 82_[+4]_2 chr19:17308696-17309196 7.6e-08 75_[+4]_9 chr19:37595005-37595505 1.5e-07 2_[+4]_82 chr1:198763247-198763747 2.2e-07 60_[+4]_24 chr16:12120443-12120943 2.8e-07 21_[+4]_63 chr10:112793338-11279383 2.8e-07 21_[+4]_63 chr6:75413289-75413789 2.8e-07 16_[+4]_68 chr17:59291713-59292213 3.1e-07 20_[+4]_64 chr1:183032411-183032911 5.8e-07 78_[+4]_6 chr18:3409073-3409573 5.8e-07 1_[-4]_83 chr1:151494721-151495221 7e-07 48_[+4]_36 chr1:61091427-61091927 7.7e-07 9_[+4]_75 chr7:116218169-116218669 8.5e-07 80_[+4]_4 chr12:54033423-54033923 1e-06 16_[-4]_68 chr17:32015515-32016015 1.1e-06 4_[+4]_80 chr6:43321920-43322420 1.4e-06 53_[-4]_31 chr3:190424480-190424980 1.5e-06 84_[-4] chr1:167658578-167659078 1.6e-06 27_[+4]_57 chr10:50463964-50464464 1.8e-06 20_[-4]_64 chr1:237166688-237167188 2e-06 57_[+4]_27 chr1:205734332-205734832 2.3e-06 3_[-4]_81 chr4:119730111-119730611 2.3e-06 33_[-4]_51 chr3:194134809-194135309 2.5e-06 45_[-4]_39 chr1:61692280-61692780 2.5e-06 53_[-4]_31 chr7:120806678-120807178 2.5e-06 31_[-4]_53 chr15:81888762-81889262 2.5e-06 34_[+4]_50 chr2:202822384-202822884 2.7e-06 68_[-4]_16 chr6:11270217-11270717 2.9e-06 66_[-4]_18 chr1:85297855-85298355 2.9e-06 78_[-4]_6 chr8:125430002-125430502 3.4e-06 58_[+4]_26 chr6:131816139-131816639 3.4e-06 36_[-4]_48 chr19:36214287-36214787 3.4e-06 20_[-4]_64 chr1:41870101-41870601 4e-06 76_[-4]_8 chr19:43572070-43572570 4e-06 21_[-4]_63 chr6:138088212-138088712 4e-06 63_[-4]_21 chr1:156660096-156660596 6.2e-06 83_[+4]_1 chr6:137853562-137854062 6.2e-06 81_[+4]_3 chr6:56529512-56530012 7.2e-06 75_[-4]_9 chr2:66364341-66364841 8.2e-06 74_[-4]_10 chr9:125887128-125887628 9.4e-06 48_[-4]_36 chr10:68153543-68154043 1.6e-05 49_[+4]_35 chr17:48407054-48407554 1.8e-05 81_[-4]_3 chr19:34218147-34218647 2.3e-05 62_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTKTKTKTKTKTKTKT width=16 seqs=58 chr11:73376989-73377489 ( 83) GTGTGTGTGTGTGTGT 1 chr12:57111954-57112454 ( 1) GTGTGTGTGTGTGTGT 1 chr10:101442026-10144252 ( 72) GTGTGTGTGTGTGTGT 1 chr6:111568260-111568760 ( 1) GTGTGTGTGTGTGTGT 1 chr1:28884847-28885347 ( 2) GTGTGTGTGTGTGTGT 1 chr8:37701106-37701606 ( 75) GTGTGTGTGTGTGTGT 1 chr12:124518911-12451941 ( 1) GTGTGTGTGTGTGTGT 1 chr15:40092240-40092740 ( 15) GTGTGTGTGTGTGTGT 1 chr20:25862677-25863177 ( 1) GTGTGTGTGTGTGTGT 1 chr17:8226713-8227213 ( 53) TTTTTTTTGTGTGTGT 1 chr6:28898150-28898650 ( 80) GTTTTTGTTTGTTTGT 1 chr6:133248608-133249108 ( 69) TTTTTTGTTTGTTTGT 1 chr13:100363832-10036433 ( 59) GTTTTTGTTTGTTTGT 1 chr7:150360022-150360522 ( 28) ATTTTTGTGTGTGTGT 1 chr5:93582547-93583047 ( 39) ATGTGTGTGTGTGTGT 1 chr17:75368239-75368739 ( 83) GTTTGTTTTTTTTTTT 1 chr19:17308696-17309196 ( 76) TTTTTTTTTTTTTTTT 1 chr19:37595005-37595505 ( 3) GTGTGTGCGTGTGTGT 1 chr1:198763247-198763747 ( 61) ATTTCTGTGTGTTTGT 1 chr16:12120443-12120943 ( 22) GTGTCTGTGTTTATGT 1 chr10:112793338-11279383 ( 22) TCTTTTGTTTGTTTGT 1 chr6:75413289-75413789 ( 17) TTGTTTGTTTTTCTTT 1 chr17:59291713-59292213 ( 21) GTTTGTTTATTTGTTT 1 chr1:183032411-183032911 ( 79) TTTTTTTTCTTTTTTT 1 chr18:3409073-3409573 ( 2) TTGTTTGTTTTGTTTT 1 chr1:151494721-151495221 ( 49) GTTTTTTTTTTTTTCT 1 chr1:61091427-61091927 ( 10) TTTTCTTTGTGGGTGT 1 chr7:116218169-116218669 ( 81) ATTTTTGTTTTTATAT 1 chr12:54033423-54033923 ( 17) TTTTTTTTCTTTATTT 1 chr17:32015515-32016015 ( 5) TTTTGTTTATGGGTGT 1 chr6:43321920-43322420 ( 54) TTGTGGTTTTGTTTTT 1 chr3:190424480-190424980 ( 85) TTTTTTTTTTTGGTAT 1 chr1:167658578-167659078 ( 28) TTTTTTTTTTGTCTCT 1 chr10:50463964-50464464 ( 21) TCTTGTTTGTTTTTAT 1 chr1:237166688-237167188 ( 58) GCTTTTGTTTGGGTTT 1 chr1:205734332-205734832 ( 4) TTTTATTTATTTATTT 1 chr4:119730111-119730611 ( 34) GTTTATGTTTGCTTTT 1 chr3:194134809-194135309 ( 46) GTGTGTGCGTGCGTGT 1 chr1:61692280-61692780 ( 54) TTTTTTTCTTTTCTTT 1 chr7:120806678-120807178 ( 32) ATTTGTTTTTATGTGT 1 chr15:81888762-81889262 ( 35) TTGTTTTGTTGTGTTT 1 chr2:202822384-202822884 ( 69) TTGTTGTTGTTTATTT 1 chr6:11270217-11270717 ( 67) GTGTCTGCTTGTTTAT 1 chr1:85297855-85298355 ( 79) TCGTGTATGTGTTTTT 1 chr8:125430002-125430502 ( 59) GTGAGTGTGTGTGTAT 1 chr6:131816139-131816639 ( 37) GTTTATTTTTTCTTGT 1 chr19:36214287-36214787 ( 21) GTGTCTTTGTGGCTGT 1 chr1:41870101-41870601 ( 77) TTGTGTGTGTGATTAT 1 chr19:43572070-43572570 ( 22) ATGTAGGTGTTTGTGT 1 chr6:138088212-138088712 ( 64) ATGCGTGTGTGTATTT 1 chr1:156660096-156660596 ( 84) GCGTGTGCCTGTGTGT 1 chr6:137853562-137854062 ( 82) TTTTTTAAGTGTGTGT 1 chr6:56529512-56530012 ( 76) TCTTCTTTATTTTTTT 1 chr2:66364341-66364841 ( 75) TTGTTTTTATCTATGT 1 chr9:125887128-125887628 ( 49) GCGTGTGCTTTTCTTT 1 chr10:68153543-68154043 ( 50) TTGCATATGTTTGTTT 1 chr17:48407054-48407554 ( 82) ATTTCTGCTTTTATCT 1 chr19:34218147-34218647 ( 63) ATTTATGTCTGGATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.4678 E= 4.8e-061 -63 -1250 73 78 -1250 -111 -1250 187 -1250 -1250 94 106 -380 -291 -1250 198 -121 -111 67 59 -1250 -1250 -233 198 -221 -1250 113 66 -380 -111 -391 181 -148 -191 84 66 -1250 -1250 -1250 206 -380 -391 122 59 -380 -233 -111 175 -63 -159 79 37 -1250 -1250 -1250 206 -99 -233 94 45 -1250 -1250 -1250 206 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 58 E= 4.8e-061 0.155172 0.000000 0.431034 0.413793 0.000000 0.120690 0.000000 0.879310 0.000000 0.000000 0.500000 0.500000 0.017241 0.034483 0.000000 0.948276 0.103448 0.120690 0.413793 0.362069 0.000000 0.000000 0.051724 0.948276 0.051724 0.000000 0.568966 0.379310 0.017241 0.120690 0.017241 0.844828 0.086207 0.068966 0.465517 0.379310 0.000000 0.000000 0.000000 1.000000 0.017241 0.017241 0.603448 0.362069 0.017241 0.051724 0.120690 0.810345 0.155172 0.086207 0.448276 0.310345 0.000000 0.000000 0.000000 1.000000 0.120690 0.051724 0.500000 0.327586 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTKTKTKTKTKTKTKT MEME-4 regular expression -------------------------------------------------------------------------------- [GT]T[GT]T[GT]T[GT]T[GT]T[GT]T[GT]T[GT]T -------------------------------------------------------------------------------- Time 1278.71 secs. ******************************************************************************** ******************************************************************************** MOTIF ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 width = 31 sites = 12 llr = 405 E-value = 1.4e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:3:1:::::8::8::::11::a122::31: pos.-specific C :8:::::1:9:a8:1:::::8a:1:8::::9 probability G ::7a9a::::2::3:a:198:::88::a8:1 matrix T :21:::a9a11:3:9:a9:13::1:1a::9: bits 2.1 * * * * * * 1.9 * * ** * * ** ** ** 1.6 * * **** * **** ** ** * 1.4 * ******* * ***** ** ** ** Relative 1.2 ** ******* ************ * ***** Entropy 1.0 ** ******************** ******* (48.7 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel ACGGGGTTTCACCATGTTGGCCAGGCTGGTC consensus A TG T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr6:27671963-27672463 + 22 7.36e-18 tttagtagag acggggtttcaccgtgttggtcaggctggtc tccaacccct chr15:72107089-72107589 - 60 1.98e-17 TTTAGTAGAG ACAGGGTTTCACCATGTTGACCAGGCTGGTC TGGGACTCCT chr6:27602218-27602718 + 4 2.35e-17 gaa atggggtttcgccatgttggccaggctggtc tcgaactcct chr6:32636642-32637142 - 52 2.78e-17 TTTAGTAGAG ACGGGGTTTCACTATGTTGGCCACGCTGGTC TTGAACTCCT chr1:61057583-61058083 + 19 4.21e-17 tttagtagag acggggtttcaccatgtgggtcaggctggtc gcgaactcct chr12:10211934-10212434 + 5 7.66e-17 agag acagggtttctccatgttggtcaggctggtc tcgaactcct chr17:43368333-43368833 + 50 1.31e-16 tttagtagag actgggtttcactatgttggccagactggtc tggaactcct chr9:127740658-127741158 + 12 1.46e-16 tttagtagag acggggtttcaccatgttggccaagatgatc tcaatctcct chr3:190424480-190424980 - 43 2.83e-16 TTTAGTAGAG ATGGGGTTTCGCCATGTTGGCCAGGTTGGTC TCGAACTCCT chr12:31078667-31079167 + 9 1.27e-15 taatagag acagggtttcaccgtgttagccaggatgatc tcagtcttct chr21:43857427-43857927 - 70 1.74e-15 . ACGGGGTTTCACCACGTTGGCCATACTGATC TTGAACTCCT chr16:3156770-3157270 + 4 4.31e-13 gag acggagtcttactgtgttgtccaggctggag tgcactggca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27671963-27672463 7.4e-18 21_[+5]_48 chr15:72107089-72107589 2e-17 59_[-5]_10 chr6:27602218-27602718 2.4e-17 3_[+5]_66 chr6:32636642-32637142 2.8e-17 51_[-5]_18 chr1:61057583-61058083 4.2e-17 18_[+5]_51 chr12:10211934-10212434 7.7e-17 4_[+5]_65 chr17:43368333-43368833 1.3e-16 49_[+5]_20 chr9:127740658-127741158 1.5e-16 11_[+5]_58 chr3:190424480-190424980 2.8e-16 42_[-5]_27 chr12:31078667-31079167 1.3e-15 8_[+5]_61 chr21:43857427-43857927 1.7e-15 69_[-5] chr16:3156770-3157270 4.3e-13 3_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACGGGGTTTCACCATGTTGGCCAGGCTGGTC width=31 seqs=12 chr6:27671963-27672463 ( 22) ACGGGGTTTCACCGTGTTGGTCAGGCTGGTC 1 chr15:72107089-72107589 ( 60) ACAGGGTTTCACCATGTTGACCAGGCTGGTC 1 chr6:27602218-27602718 ( 4) ATGGGGTTTCGCCATGTTGGCCAGGCTGGTC 1 chr6:32636642-32637142 ( 52) ACGGGGTTTCACTATGTTGGCCACGCTGGTC 1 chr1:61057583-61058083 ( 19) ACGGGGTTTCACCATGTGGGTCAGGCTGGTC 1 chr12:10211934-10212434 ( 5) ACAGGGTTTCTCCATGTTGGTCAGGCTGGTC 1 chr17:43368333-43368833 ( 50) ACTGGGTTTCACTATGTTGGCCAGACTGGTC 1 chr9:127740658-127741158 ( 12) ACGGGGTTTCACCATGTTGGCCAAGATGATC 1 chr3:190424480-190424980 ( 43) ATGGGGTTTCGCCATGTTGGCCAGGTTGGTC 1 chr12:31078667-31079167 ( 9) ACAGGGTTTCACCGTGTTAGCCAGGATGATC 1 chr21:43857427-43857927 ( 70) ACGGGGTTTCACCACGTTGGCCATACTGATC 1 chr16:3156770-3157270 ( 4) ACGGAGTCTTACTGTGTTGTCCAGGCTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 11.4316 E= 1.4e-067 206 -1023 -1023 -1023 -1023 168 -1023 -53 6 -1023 136 -153 -1023 -1023 194 -1023 -153 -1023 182 -1023 -1023 -1023 194 -1023 -1023 -1023 -1023 206 -1023 -164 -1023 193 -1023 -1023 -1023 206 -1023 182 -1023 -153 164 -1023 -64 -153 -1023 194 -1023 -1023 -1023 153 -1023 6 164 -1023 -6 -1023 -1023 -164 -1023 193 -1023 -1023 194 -1023 -1023 -1023 -1023 206 -1023 -1023 -164 193 -153 -1023 182 -1023 -153 -1023 168 -153 -1023 153 -1023 6 -1023 194 -1023 -1023 206 -1023 -1023 -1023 -153 -164 153 -153 -53 -1023 168 -1023 -53 153 -1023 -153 -1023 -1023 -1023 206 -1023 -1023 194 -1023 6 -1023 153 -1023 -153 -1023 -1023 193 -1023 182 -164 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 12 E= 1.4e-067 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.250000 0.000000 0.666667 0.083333 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.750000 0.000000 0.166667 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.083333 0.000000 0.916667 0.000000 0.083333 0.000000 0.833333 0.083333 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.083333 0.750000 0.083333 0.166667 0.000000 0.833333 0.000000 0.166667 0.750000 0.000000 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.083333 0.000000 0.000000 0.916667 0.000000 0.916667 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGGGTTTCACCATGTTGGCCAGGCTGGTC MEME-5 regular expression -------------------------------------------------------------------------------- AC[GA]GGGTTTCAC[CT][AG]TGTTGG[CT]CAGGCTG[GA]TC -------------------------------------------------------------------------------- Time 1565.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCKSMCSCNSHCSCTSCCSC MEME-6 width = 21 sites = 83 llr = 886 E-value = 1.5e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 Description -------------------------------------------------------------------------------- Simplified A 1:::12:::222:::::21:: pos.-specific C 78a144a67354749255848 probability G 2::452:3223:34:252142 matrix T 12:4:2:113:3:21611:2: bits 2.1 1.9 * 1.6 * * 1.4 * * * Relative 1.2 ** * * Entropy 1.0 ** * * * * (15.4 bits) 0.8 ** * * * * * * 0.6 *** * * * * * * * * * 0.4 ***** *** * ***** *** 0.2 ***** *** *********** 0.0 --------------------- Multilevel CCCGGCCCCCCCCCCTCCCCC consensus TCA G TGTGG G GG sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr16:19536-20036 + 11 7.20e-09 cctcacccta ccctgaccctcaccctgaccc tgaccctgac chr15:72230297-72230797 - 44 7.20e-09 CGCCCCAGTT CCCTCTCGCCGCCCCTCCCCC TGCTTGCTGG chr19:35269677-35270177 + 72 1.12e-08 CAGCCCAGCG CCCGGGCCCCGCCGCTGCCTC TGTGCCCC chr19:727084-727584 + 8 2.02e-08 aacctga ccctgaccccgaccctgaccc tgatctcagt chr5:49407-49907 - 68 2.02e-08 CTGACCCTAA CCCTGACCCTGACCCTGACCC TAACCCGGAA chr20:64286561-64287061 - 68 2.02e-08 CTGACCCTGA CCCTGACCCTGACCCTGACCC TACCCTAACC chr5:173057131-173057631 - 26 4.23e-08 CCGAAACACC CCCGGCCCGGCTCCCTCGCCC TTTGCCCTGT chr17:50866476-50866976 - 73 8.32e-08 TTCGTCC CCCTCCCCCTCTGCCCGGCGC TCTCCGCCTA chr22:38398518-38399018 + 17 8.32e-08 AAAGGAGCGT CCCGCACCCCCACCCCCGCCC GGAGGATTTA chr20:38033475-38033975 - 56 1.82e-07 AAGATGGCCA CCCGACCTCTCACCCTGCCGC GAGAGCGAGG chr21:39313560-39314060 - 67 2.45e-07 ACGCGCCCTC CCCTCCCCCACTCGCTGCTGC GGCGCCCAGG chr6:27472872-27473372 + 73 2.83e-07 TACGAGCGAG CCCCGCCCCGCACGCCGGCGC CGGGCGG chr6:159726847-159727347 + 52 2.83e-07 ACCTCGCTGG CCCGCCCCTCCCCTCGGCCGC TTCCCTTACT chr11:62771363-62771863 + 67 3.26e-07 TGACCTCCTC CCCCCGCGCACCCCCTCCCCG ATCTGGGCTG chr1:229221223-229221723 + 11 3.26e-07 TGGCTGCCGT CCCTGCCCCACACTCACCCCC ACGACAGCCA chr19:40603512-40604012 - 65 3.26e-07 TGCGAGGGCA CCCCCTCCCTCTCTCTCCCGG GGCTGCAGAG chr1:228452407-228452907 + 74 3.75e-07 gctaacccat ccctgaccttctggctgaccc ccccga chr19:8240277-8240777 - 67 4.29e-07 GACTCACTCA CCCGCCCCTGCAGCCTGGCCC GCTGCCTGGG chr3:194134809-194135309 + 74 6.39e-07 aTCCTCCCGG CCCGGCCGCAGCCGCGGCGGC AATAAA chr19:44212467-44212967 - 17 6.39e-07 CCCTCGGCCT CTCGGCCTCCGCCGCGGCCGC GACCTCTCCA chr16:23557261-23557761 + 78 6.39e-07 AGGGCTATTT CCCGGACCCGCCCCCTTCAGC TT chr15:40092240-40092740 + 46 8.26e-07 cCCTTGTGCG CCCGCCCGCTCTCCCTCCCCA GCATCTCCAG chr2:131803166-131803666 - 46 8.26e-07 TAACTGCTAA CCCTAACCCCAACCCTCACCC TAACCCAACC chr4:705093-705593 + 72 9.36e-07 ctaaacccaa ccctaaccctgactctgaccc ctaacccg chr1:173868220-173868720 + 51 9.36e-07 CACCGGGGTC ACCTCGCCCGCCCTCCGCCGC AGCGCGCTCC chr12:121799839-12180033 + 18 1.06e-06 AAGGGAGCAC CCCAGACGCCGCCCCTCCCCC AGCGGCCCGG chr6:28898150-28898650 - 40 1.35e-06 ATTGATGTAG GCCGGGCGCGGTGGCTCACGC CTGTAATCCC chr12:114914164-11491466 - 23 1.52e-06 ATAATTCTTT CCCTGACCCACTCTCTGGCAC ATTTGGTTTG chr17:75035273-75035773 + 67 1.52e-06 CCAGTCTCTg gccgggcccaatggctcacgc ctgtaatccc chr19:17308696-17309196 - 50 1.52e-06 AAAAAAGCCA GCCGGGCGCAGTGGCTCACGC CTGTAATCCC chr12:54032617-54033117 + 11 1.70e-06 ttccctcttt ctctctctcactccctctccc cctTGGTTGG chr7:23470508-23471008 - 5 1.91e-06 ATCTCGTTTC CCCTCCCCCTCTTCCTCTCGC TCGC chr17:47649655-47650155 + 56 1.91e-06 cttcctccct ccctcgctccctccctgcgcg ccgcctctca chr13:112689540-11269004 + 37 1.91e-06 TCCCTTCCCC GCCGCGCCCAGCGCCTGCGCC CCGGGAGGCG chr12:51025987-51026487 + 57 2.14e-06 AGGCCCTCGA GCCGCCCCGCGCCCCTCCCTG CCAGCGAGCG chr20:48921351-48921851 + 44 2.39e-06 ccaccctcca ccctcgccttctgtctctcgc ccACCTGACT chr1:234723899-234724399 - 36 2.39e-06 CCTCCCTCCT CCCTTCCTCCCTCCCTCTCCC TCCATTTCTC chr17:7844450-7844950 + 15 2.39e-06 TGCGGGTAGC GCCGGCCCCCACGCCGGCCGG AGCATGCGAC chr17:48626415-48626915 + 54 2.67e-06 CTACCGGCCG CCCGGTCCCCCCCTCCCGCTG CAGGAAGGGG chr1:43389703-43390203 - 38 2.67e-06 CATCACACAG CCCTCCCGCGCCGGCCCGGGC CAGTGAGGGT chr15:71115101-71115601 + 53 2.98e-06 GCGGATGGGG GCCGGCCCTTCCCGCGGTCGC CGCCAGGGGG chr14:103520869-10352136 + 66 2.98e-06 CCGGAGCGCG GCCGGCCcctccctcctcctc ctcctcctcc chr22:24952222-24952722 - 75 2.98e-06 GACAC CCCTGCCGGAAGCGCTCCCGC CCCTCGAGGC chr19:38464651-38465151 - 66 2.98e-06 TGGACTCATA CCCTCCCTCTCTCTCTCTCTG AAACTCCTAA chr15:66701042-66701542 + 39 3.32e-06 CGAGGAGGTA CCCCGCCGCGCCGGCTCCAGG GGCAGGAGCG chr1:155000886-155001386 - 34 3.69e-06 CCCTCTTTCT CCCTCTCTCCCTCTCCGCGCC GGGCCGTGAC chr19:10252197-10252697 - 21 4.10e-06 GCTCCGGGTT CTCGGTCGCACGCGCTGCCTC TTCCGCCAGG chr7:159013226-159013726 - 18 4.54e-06 CCAACCTTGA CCCTGACCCCAACCTTGACTC CCAACCCGAC chr1:31938370-31938870 + 60 5.03e-06 GGCCTGGGGA GTCGCTCGCCCACGCTGCGCC CCGCCCATCC chr21:38985020-38985520 + 32 5.03e-06 AAAAAAATCA ACCGCCACCGCAGGCTGCCCC CACGGTCCCT chr19:1205127-1205627 - 15 6.14e-06 GCGGGGCCAC CCCTACCAGAGCCCCTCCCCC GCATCCCCCT chr10:101442026-10144252 + 42 6.78e-06 TAGAAtctct ctctctctctctctctgtctc tgtgtgtatg chr1:1145196-1145696 + 41 6.78e-06 GGCCGACCTG ACCTGACCGCACGGCTGACCC AACCCCATCT chr12:57522131-57522631 - 47 6.78e-06 ACTTGCCCTG CCCCGCCCCAAAGGCTTCCCG GGTAGTGTGC chr3:48663582-48664082 + 66 8.22e-06 AATGGGAGGC CCCGCCCCTCACGGCGGACTC ATCGCATGGG chr19:39125802-39126302 - 26 9.92e-06 CCCCCGACCC CTCGGACGCGACCCTTCCCTC CACCAGTGAC chr7:4641734-4642234 - 9 9.92e-06 TTAGGGTTAC CCCTCGCCGGCAGCCGCGCCG TGTGTTTA chr14:75069208-75069708 + 11 1.19e-05 CTCCAGAAAA GCCTCTCCCGCCCCTCCCCGG CTCCCCAAGG chr7:100895990-100896490 + 71 1.19e-05 CACTTGGACA CCCTGTCGGTCTCGCTCGAGG CTGGTGAAG chr7:73522253-73522753 - 74 1.30e-05 CTCGTC CTCTCCATCCCCCGCTGTCCC CCACTTTTAA chr19:18223988-18224488 - 74 1.30e-05 TTGTCT TCCTGTCGGTGCCGCTTCCGC CTGCCCTTCT chr17:27353541-27354041 + 32 1.30e-05 CGTCTCCACA CTCGCTCCCGGCCGCCCCACG GTCCCAGGGA chr5:352619-353119 - 3 1.42e-05 CCTCACAGTG ACCGTCCCCTACGGCTGACCC AT chr12:12266925-12267425 + 21 1.85e-05 GGAGTCGGCA ACCGCACGCACAGCCTCTGCC TGAGACCCTG chr19:39412546-39413046 + 48 2.01e-05 GAGGTCCAGA CCCCGGCGCCCAGGCTGGAGG ACTTGAGCCA chr9:132581968-132582468 - 39 2.01e-05 CGGGGAGGTC CTCTCTCCGCGCCCTCGCCGC TCCGGGGGCC chr1:1000571-1001071 - 42 2.19e-05 CTCCTCGTGG TCCGGCCCGGCCCGCGCCATC ACCGGCCCTG chr12:131929275-13192977 - 49 2.58e-05 CCCCTGACCT CTCGGACCTGGACGCCCCAGC CTCACTCCTG chr16:683569-684069 - 50 2.58e-05 CCCGTCCGTC CCCGGCCACTCTCGCCCGTGC TGGGCCCGGC chr14:101761035-10176153 + 67 2.80e-05 CATTTCCTAC GTCTCACGCTCTGTCTTGCGC CTCCACAGCG chr19:40090548-40091048 + 53 2.80e-05 TACTCTGAGC GCCTCCCCCTAGGCCACCCGC ACTGTCGGGT chr5:96935152-96935652 + 70 3.28e-05 TGCCGAAAAC ACCTACAGCGCCCGCTCCCTC GGTCCTTCGA chr17:51165800-51166300 - 1 3.28e-05 TGACTTGGCT CTCCCTCCCCGTCGTGCACCC chr19:44844629-44845129 - 74 3.55e-05 GACCGG CCCCCGCGCTGCGCTGGCCCG GCCGGGCTGG chr1:24413486-24413986 + 28 3.55e-05 AGCCCAACCT CCCGGTCGCTATGGCACCCAC AGGCCTAACA chr1:154974031-154974531 + 34 4.46e-05 TCATGGAGTC TCCGCACCGCACCGCGGGCCG ATTTGGTGCC chr17:75904894-75905394 - 65 4.46e-05 GGCCCCGGCG GCCGACCCCGGTCTGTGCCGC CCCCTGGTGG chr19:36139805-36140305 - 10 4.81e-05 GACACTGCAC CGCGGCCCTGCTGTCGCCCGC GCGGTCCTA chr7:73308582-73309082 + 45 4.81e-05 GGCAAAACGC ACCCGGCTCGGCGCCCGCCCG GACTTCCGGG chr19:1383494-1383994 + 3 7.93e-05 CG GTCCGCCGCAGACCCGCGGCC CCCACGTGCG chr7:100450358-100450858 + 49 9.09e-05 TTAACGCCGG TCCGCGCACCGCGGCGCCACC TGGAGGTCAG chrX:1392290-1392790 - 34 1.04e-04 ATGTCGCACA TCCCGGCGGGGTCGCCGCGGC CTCCGGGAGA chr14:20343013-20343513 + 33 1.26e-04 CCAGTCTGAC CTCGCGCGGAGCCCCGTTCTC TGGGAACTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:19536-20036 7.2e-09 10_[+6]_69 chr15:72230297-72230797 7.2e-09 43_[-6]_36 chr19:35269677-35270177 1.1e-08 71_[+6]_8 chr19:727084-727584 2e-08 7_[+6]_72 chr5:49407-49907 2e-08 67_[-6]_12 chr20:64286561-64287061 2e-08 67_[-6]_12 chr5:173057131-173057631 4.2e-08 25_[-6]_54 chr17:50866476-50866976 8.3e-08 72_[-6]_7 chr22:38398518-38399018 8.3e-08 16_[+6]_63 chr20:38033475-38033975 1.8e-07 55_[-6]_24 chr21:39313560-39314060 2.4e-07 66_[-6]_13 chr6:27472872-27473372 2.8e-07 72_[+6]_7 chr6:159726847-159727347 2.8e-07 51_[+6]_28 chr11:62771363-62771863 3.3e-07 66_[+6]_13 chr1:229221223-229221723 3.3e-07 10_[+6]_69 chr19:40603512-40604012 3.3e-07 64_[-6]_15 chr1:228452407-228452907 3.7e-07 73_[+6]_6 chr19:8240277-8240777 4.3e-07 66_[-6]_13 chr3:194134809-194135309 6.4e-07 73_[+6]_6 chr19:44212467-44212967 6.4e-07 16_[-6]_63 chr16:23557261-23557761 6.4e-07 77_[+6]_2 chr15:40092240-40092740 8.3e-07 45_[+6]_34 chr2:131803166-131803666 8.3e-07 45_[-6]_34 chr4:705093-705593 9.4e-07 71_[+6]_8 chr1:173868220-173868720 9.4e-07 50_[+6]_29 chr12:121799839-12180033 1.1e-06 17_[+6]_62 chr6:28898150-28898650 1.3e-06 39_[-6]_40 chr12:114914164-11491466 1.5e-06 22_[-6]_57 chr17:75035273-75035773 1.5e-06 66_[+6]_13 chr19:17308696-17309196 1.5e-06 49_[-6]_30 chr12:54032617-54033117 1.7e-06 10_[+6]_69 chr7:23470508-23471008 1.9e-06 4_[-6]_75 chr17:47649655-47650155 1.9e-06 55_[+6]_24 chr13:112689540-11269004 1.9e-06 36_[+6]_43 chr12:51025987-51026487 2.1e-06 56_[+6]_23 chr20:48921351-48921851 2.4e-06 43_[+6]_36 chr1:234723899-234724399 2.4e-06 35_[-6]_44 chr17:7844450-7844950 2.4e-06 14_[+6]_65 chr17:48626415-48626915 2.7e-06 53_[+6]_26 chr1:43389703-43390203 2.7e-06 37_[-6]_42 chr15:71115101-71115601 3e-06 52_[+6]_27 chr14:103520869-10352136 3e-06 65_[+6]_14 chr22:24952222-24952722 3e-06 74_[-6]_5 chr19:38464651-38465151 3e-06 65_[-6]_14 chr15:66701042-66701542 3.3e-06 38_[+6]_41 chr1:155000886-155001386 3.7e-06 33_[-6]_46 chr19:10252197-10252697 4.1e-06 20_[-6]_59 chr7:159013226-159013726 4.5e-06 17_[-6]_62 chr1:31938370-31938870 5e-06 59_[+6]_20 chr21:38985020-38985520 5e-06 31_[+6]_48 chr19:1205127-1205627 6.1e-06 14_[-6]_65 chr10:101442026-10144252 6.8e-06 41_[+6]_38 chr1:1145196-1145696 6.8e-06 40_[+6]_39 chr12:57522131-57522631 6.8e-06 46_[-6]_33 chr3:48663582-48664082 8.2e-06 65_[+6]_14 chr19:39125802-39126302 9.9e-06 25_[-6]_54 chr7:4641734-4642234 9.9e-06 8_[-6]_71 chr14:75069208-75069708 1.2e-05 10_[+6]_69 chr7:100895990-100896490 1.2e-05 70_[+6]_9 chr7:73522253-73522753 1.3e-05 73_[-6]_6 chr19:18223988-18224488 1.3e-05 73_[-6]_6 chr17:27353541-27354041 1.3e-05 31_[+6]_48 chr5:352619-353119 1.4e-05 2_[-6]_77 chr12:12266925-12267425 1.8e-05 20_[+6]_59 chr19:39412546-39413046 2e-05 47_[+6]_32 chr9:132581968-132582468 2e-05 38_[-6]_41 chr1:1000571-1001071 2.2e-05 41_[-6]_38 chr12:131929275-13192977 2.6e-05 48_[-6]_31 chr16:683569-684069 2.6e-05 49_[-6]_30 chr14:101761035-10176153 2.8e-05 66_[+6]_13 chr19:40090548-40091048 2.8e-05 52_[+6]_27 chr5:96935152-96935652 3.3e-05 69_[+6]_10 chr17:51165800-51166300 3.3e-05 [-6]_79 chr19:44844629-44845129 3.5e-05 73_[-6]_6 chr1:24413486-24413986 3.5e-05 27_[+6]_52 chr1:154974031-154974531 4.5e-05 33_[+6]_46 chr17:75904894-75905394 4.5e-05 64_[-6]_15 chr19:36139805-36140305 4.8e-05 9_[-6]_70 chr7:73308582-73309082 4.8e-05 44_[+6]_35 chr19:1383494-1383994 7.9e-05 2_[+6]_77 chr7:100450358-100450858 9.1e-05 48_[+6]_31 chrX:1392290-1392790 0.0001 33_[-6]_46 chr14:20343013-20343513 0.00013 32_[+6]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCKSMCSCNSHCSCTSCCSC width=21 seqs=83 chr16:19536-20036 ( 11) CCCTGACCCTCACCCTGACCC 1 chr15:72230297-72230797 ( 44) CCCTCTCGCCGCCCCTCCCCC 1 chr19:35269677-35270177 ( 72) CCCGGGCCCCGCCGCTGCCTC 1 chr19:727084-727584 ( 8) CCCTGACCCCGACCCTGACCC 1 chr5:49407-49907 ( 68) CCCTGACCCTGACCCTGACCC 1 chr20:64286561-64287061 ( 68) CCCTGACCCTGACCCTGACCC 1 chr5:173057131-173057631 ( 26) CCCGGCCCGGCTCCCTCGCCC 1 chr17:50866476-50866976 ( 73) CCCTCCCCCTCTGCCCGGCGC 1 chr22:38398518-38399018 ( 17) CCCGCACCCCCACCCCCGCCC 1 chr20:38033475-38033975 ( 56) CCCGACCTCTCACCCTGCCGC 1 chr21:39313560-39314060 ( 67) CCCTCCCCCACTCGCTGCTGC 1 chr6:27472872-27473372 ( 73) CCCCGCCCCGCACGCCGGCGC 1 chr6:159726847-159727347 ( 52) CCCGCCCCTCCCCTCGGCCGC 1 chr11:62771363-62771863 ( 67) CCCCCGCGCACCCCCTCCCCG 1 chr1:229221223-229221723 ( 11) CCCTGCCCCACACTCACCCCC 1 chr19:40603512-40604012 ( 65) CCCCCTCCCTCTCTCTCCCGG 1 chr1:228452407-228452907 ( 74) CCCTGACCTTCTGGCTGACCC 1 chr19:8240277-8240777 ( 67) CCCGCCCCTGCAGCCTGGCCC 1 chr3:194134809-194135309 ( 74) CCCGGCCGCAGCCGCGGCGGC 1 chr19:44212467-44212967 ( 17) CTCGGCCTCCGCCGCGGCCGC 1 chr16:23557261-23557761 ( 78) CCCGGACCCGCCCCCTTCAGC 1 chr15:40092240-40092740 ( 46) CCCGCCCGCTCTCCCTCCCCA 1 chr2:131803166-131803666 ( 46) CCCTAACCCCAACCCTCACCC 1 chr4:705093-705593 ( 72) CCCTAACCCTGACTCTGACCC 1 chr1:173868220-173868720 ( 51) ACCTCGCCCGCCCTCCGCCGC 1 chr12:121799839-12180033 ( 18) CCCAGACGCCGCCCCTCCCCC 1 chr6:28898150-28898650 ( 40) GCCGGGCGCGGTGGCTCACGC 1 chr12:114914164-11491466 ( 23) CCCTGACCCACTCTCTGGCAC 1 chr17:75035273-75035773 ( 67) GCCGGGCCCAATGGCTCACGC 1 chr19:17308696-17309196 ( 50) GCCGGGCGCAGTGGCTCACGC 1 chr12:54032617-54033117 ( 11) CTCTCTCTCACTCCCTCTCCC 1 chr7:23470508-23471008 ( 5) CCCTCCCCCTCTTCCTCTCGC 1 chr17:47649655-47650155 ( 56) CCCTCGCTCCCTCCCTGCGCG 1 chr13:112689540-11269004 ( 37) GCCGCGCCCAGCGCCTGCGCC 1 chr12:51025987-51026487 ( 57) GCCGCCCCGCGCCCCTCCCTG 1 chr20:48921351-48921851 ( 44) CCCTCGCCTTCTGTCTCTCGC 1 chr1:234723899-234724399 ( 36) CCCTTCCTCCCTCCCTCTCCC 1 chr17:7844450-7844950 ( 15) GCCGGCCCCCACGCCGGCCGG 1 chr17:48626415-48626915 ( 54) CCCGGTCCCCCCCTCCCGCTG 1 chr1:43389703-43390203 ( 38) CCCTCCCGCGCCGGCCCGGGC 1 chr15:71115101-71115601 ( 53) GCCGGCCCTTCCCGCGGTCGC 1 chr14:103520869-10352136 ( 66) GCCGGCCCCTCCCTCCTCCTC 1 chr22:24952222-24952722 ( 75) CCCTGCCGGAAGCGCTCCCGC 1 chr19:38464651-38465151 ( 66) CCCTCCCTCTCTCTCTCTCTG 1 chr15:66701042-66701542 ( 39) CCCCGCCGCGCCGGCTCCAGG 1 chr1:155000886-155001386 ( 34) CCCTCTCTCCCTCTCCGCGCC 1 chr19:10252197-10252697 ( 21) CTCGGTCGCACGCGCTGCCTC 1 chr7:159013226-159013726 ( 18) CCCTGACCCCAACCTTGACTC 1 chr1:31938370-31938870 ( 60) GTCGCTCGCCCACGCTGCGCC 1 chr21:38985020-38985520 ( 32) ACCGCCACCGCAGGCTGCCCC 1 chr19:1205127-1205627 ( 15) CCCTACCAGAGCCCCTCCCCC 1 chr10:101442026-10144252 ( 42) CTCTCTCTCTCTCTCTGTCTC 1 chr1:1145196-1145696 ( 41) ACCTGACCGCACGGCTGACCC 1 chr12:57522131-57522631 ( 47) CCCCGCCCCAAAGGCTTCCCG 1 chr3:48663582-48664082 ( 66) CCCGCCCCTCACGGCGGACTC 1 chr19:39125802-39126302 ( 26) CTCGGACGCGACCCTTCCCTC 1 chr7:4641734-4642234 ( 9) CCCTCGCCGGCAGCCGCGCCG 1 chr14:75069208-75069708 ( 11) GCCTCTCCCGCCCCTCCCCGG 1 chr7:100895990-100896490 ( 71) CCCTGTCGGTCTCGCTCGAGG 1 chr7:73522253-73522753 ( 74) CTCTCCATCCCCCGCTGTCCC 1 chr19:18223988-18224488 ( 74) TCCTGTCGGTGCCGCTTCCGC 1 chr17:27353541-27354041 ( 32) CTCGCTCCCGGCCGCCCCACG 1 chr5:352619-353119 ( 3) ACCGTCCCCTACGGCTGACCC 1 chr12:12266925-12267425 ( 21) ACCGCACGCACAGCCTCTGCC 1 chr19:39412546-39413046 ( 48) CCCCGGCGCCCAGGCTGGAGG 1 chr9:132581968-132582468 ( 39) CTCTCTCCGCGCCCTCGCCGC 1 chr1:1000571-1001071 ( 42) TCCGGCCCGGCCCGCGCCATC 1 chr12:131929275-13192977 ( 49) CTCGGACCTGGACGCCCCAGC 1 chr16:683569-684069 ( 50) CCCGGCCACTCTCGCCCGTGC 1 chr14:101761035-10176153 ( 67) GTCTCACGCTCTGTCTTGCGC 1 chr19:40090548-40091048 ( 53) GCCTCCCCCTAGGCCACCCGC 1 chr5:96935152-96935652 ( 70) ACCTACAGCGCCCGCTCCCTC 1 chr17:51165800-51166300 ( 1) CTCCCTCCCCGTCGTGCACCC 1 chr19:44844629-44845129 ( 74) CCCCCGCGCTGCGCTGGCCCG 1 chr1:24413486-24413986 ( 28) CCCGGTCGCTATGGCACCCAC 1 chr1:154974031-154974531 ( 34) TCCGCACCGCACCGCGGGCCG 1 chr17:75904894-75905394 ( 65) GCCGACCCCGGTCTGTGCCGC 1 chr19:36139805-36140305 ( 10) CGCGGCCCTGCTGTCGCCCGC 1 chr7:73308582-73309082 ( 45) ACCCGGCTCGGCGCCCGCCCG 1 chr19:1383494-1383994 ( 3) GTCCGCCGCAGACCCGCGGCC 1 chr7:100450358-100450858 ( 49) TCCGCGCACCGCGGCGCCACC 1 chrX:1392290-1392790 ( 34) TCCCGGCGGGGTCGCCGCGGC 1 chr14:20343013-20343513 ( 33) CTCGCGCGGAGCCCCGTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.0265 E= 1.5e-039 -151 140 -62 -199 -1302 166 -443 -51 -1302 194 -1302 -1302 -431 -97 74 81 -173 74 85 -332 -15 66 -43 -41 -273 189 -1302 -1302 -273 109 15 -100 -1302 152 -73 -132 -32 15 -11 21 -62 103 27 -1302 0 66 -284 38 -1302 138 27 -431 -1302 66 66 -41 -1302 182 -443 -173 -273 -52 -52 133 -1302 85 82 -173 -41 100 -52 -100 -132 157 -126 -332 -332 74 57 -62 -431 159 -34 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 83 E= 1.5e-039 0.084337 0.686747 0.168675 0.060241 0.000000 0.819277 0.012048 0.168675 0.000000 1.000000 0.000000 0.000000 0.012048 0.132530 0.433735 0.421687 0.072289 0.433735 0.469880 0.024096 0.216867 0.409639 0.192771 0.180723 0.036145 0.963855 0.000000 0.000000 0.036145 0.554217 0.289157 0.120482 0.000000 0.746988 0.156627 0.096386 0.192771 0.289157 0.240964 0.277108 0.156627 0.530120 0.313253 0.000000 0.240964 0.409639 0.036145 0.313253 0.000000 0.674699 0.313253 0.012048 0.000000 0.409639 0.409639 0.180723 0.000000 0.915663 0.012048 0.072289 0.036145 0.180723 0.180723 0.602410 0.000000 0.469880 0.457831 0.072289 0.180723 0.518072 0.180723 0.120482 0.096386 0.771084 0.108434 0.024096 0.024096 0.433735 0.385542 0.156627 0.012048 0.783133 0.204819 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKSMCSCNSHCSCTSCCSC MEME-6 regular expression -------------------------------------------------------------------------------- CCC[GT][GC][CA]C[CG]C[CTG][CG][CTA][CG][CG]CT[CG]CC[CG][CG] -------------------------------------------------------------------------------- Time 1849.28 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATCCDCCCGCCTCRGCCTCC MEME-7 width = 22 sites = 11 llr = 228 E-value = 1.2e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 Description -------------------------------------------------------------------------------- Simplified A 2:7:::42::111::5:::::: pos.-specific C 13::89:699:67:9::aa:a8 probability G :6212:4:::9:::15a::::: matrix T 7119:13211:32a:::::a:2 bits 2.1 * * 1.9 * ***** 1.6 * * ***** 1.4 * * *** ** ***** Relative 1.2 *** *** ** ****** Entropy 1.0 * **** *** ********* (30.0 bits) 0.8 * **** ************** 0.6 ****** *************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGATCCACCCGCCTCGGCCTCC consensus C G T A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:10211934-10212434 + 55 2.51e-13 tgacctcagg tgatccgcccgcctcggcctcc tgggattaca chr16:10738686-10739186 + 78 1.60e-12 tgacctctag tgatccaaccgcctcggcctcc c chr17:75368239-75368739 + 22 1.98e-12 cttgacctcg tgatccatccgcctcagcctcc aaagtgctgg chr6:27671963-27672463 + 72 8.07e-12 tgacctcaaa tgatccgcccgtttcggcctcc ccaagtg chr1:61057583-61058083 + 69 9.77e-12 tgacctcagg tgatccactcgcctcggcctcc caaagtgttg chr6:32636642-32637142 - 13 3.48e-11 CCTGACCTCA TGATCTGCCCGTCTCAGCCTCC CAAAGTACTC chr3:190424480-190424980 - 2 3.01e-10 TGACCTCAGG TCATCCGCCCACATCGGCCTCC C chr17:67993857-67994357 - 34 5.62e-10 CCTTCCCCTC TCGGCCTCCCGTCTCAGCCTCC CCTTCCCTCT chr5:77995910-77996410 - 66 3.54e-09 ACCTCAATCC ATTTCCAACCGACTCGGCCTCC ATCGCTGGAT chr19:8240277-8240777 + 15 6.01e-09 CCAGCATGTC ACGTGCTCCCGCCTGAGCCTCT GGCCGCAGGA chr18:59265109-59265609 - 20 9.30e-09 CAGCCTCAAA CGATGCTTCTGCTTCAGCCTCT CGAGTAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:10211934-10212434 2.5e-13 54_[+7]_24 chr16:10738686-10739186 1.6e-12 77_[+7]_1 chr17:75368239-75368739 2e-12 21_[+7]_57 chr6:27671963-27672463 8.1e-12 71_[+7]_7 chr1:61057583-61058083 9.8e-12 68_[+7]_10 chr6:32636642-32637142 3.5e-11 12_[-7]_66 chr3:190424480-190424980 3e-10 1_[-7]_77 chr17:67993857-67994357 5.6e-10 33_[-7]_45 chr5:77995910-77996410 3.5e-09 65_[-7]_13 chr19:8240277-8240777 6e-09 14_[+7]_64 chr18:59265109-59265609 9.3e-09 19_[-7]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATCCDCCCGCCTCRGCCTCC width=22 seqs=11 chr12:10211934-10212434 ( 55) TGATCCGCCCGCCTCGGCCTCC 1 chr16:10738686-10739186 ( 78) TGATCCAACCGCCTCGGCCTCC 1 chr17:75368239-75368739 ( 22) TGATCCATCCGCCTCAGCCTCC 1 chr6:27671963-27672463 ( 72) TGATCCGCCCGTTTCGGCCTCC 1 chr1:61057583-61058083 ( 69) TGATCCACTCGCCTCGGCCTCC 1 chr6:32636642-32637142 ( 13) TGATCTGCCCGTCTCAGCCTCC 1 chr3:190424480-190424980 ( 2) TCATCCGCCCACATCGGCCTCC 1 chr17:67993857-67994357 ( 34) TCGGCCTCCCGTCTCAGCCTCC 1 chr5:77995910-77996410 ( 66) ATTTCCAACCGACTCGGCCTCC 1 chr19:8240277-8240777 ( 15) ACGTGCTCCCGCCTGAGCCTCT 1 chr18:59265109-59265609 ( 20) CGATGCTTCTGCTTCAGCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.428 E= 1.2e-012 -40 -151 -1010 160 -1010 7 129 -140 160 -1010 -51 -140 -1010 -1010 -151 192 -1010 165 -51 -1010 -1010 181 -1010 -140 60 -1010 48 18 -40 129 -1010 -40 -1010 181 -1010 -140 -1010 181 -1010 -140 -140 -1010 181 -1010 -140 129 -1010 18 -140 148 -1010 -40 -1010 -1010 -1010 206 -1010 181 -151 -1010 92 -1010 107 -1010 -1010 -1010 194 -1010 -1010 194 -1010 -1010 -1010 194 -1010 -1010 -1010 -1010 -1010 206 -1010 194 -1010 -1010 -1010 165 -1010 -40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 11 E= 1.2e-012 0.181818 0.090909 0.000000 0.727273 0.000000 0.272727 0.636364 0.090909 0.727273 0.000000 0.181818 0.090909 0.000000 0.000000 0.090909 0.909091 0.000000 0.818182 0.181818 0.000000 0.000000 0.909091 0.000000 0.090909 0.363636 0.000000 0.363636 0.272727 0.181818 0.636364 0.000000 0.181818 0.000000 0.909091 0.000000 0.090909 0.000000 0.909091 0.000000 0.090909 0.090909 0.000000 0.909091 0.000000 0.090909 0.636364 0.000000 0.272727 0.090909 0.727273 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.090909 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATCCDCCCGCCTCRGCCTCC MEME-7 regular expression -------------------------------------------------------------------------------- T[GC]ATCC[AGT]CCCG[CT]CTC[GA]GCCTCC -------------------------------------------------------------------------------- Time 2120.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GRRTGATGTCAT MEME-8 width = 12 sites = 53 llr = 540 E-value = 8.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 235:1a1::2a: pos.-specific C 112:::1::8:3 probability G 663:8:2a:::1 matrix T 2::a2:6:a::6 bits 2.1 * * * 1.9 * * ** * 1.6 * * ** * 1.4 * * ** * Relative 1.2 * * **** Entropy 1.0 *** **** (14.7 bits) 0.8 *** **** 0.6 ***** ***** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel GGATGATGTCAT consensus TAG G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:78558322-78558822 + 83 5.45e-08 CCTTATGGGT GGATGATGTCAT CATTGT chr20:3173057-3173557 - 35 5.45e-08 GAGAGGAGGC GGATGATGTCAT GGATGCTTCG chr19:38667025-38667525 + 32 1.64e-07 GGCAAACCTA GGGTGATGTCAT TGTTCGAAGC chr17:7836626-7837126 + 33 2.23e-07 AGGTGGCCTG GGATGATGTCAC TAGTGCACGT chr10:94673526-94674026 - 61 2.77e-07 TCTTGGACTT GAGTGATGTCAT CTGAGGTGAT chr15:70494069-70494569 + 81 4.46e-07 tgacaacccg ggatgaggtcat cactatca chr6:56529512-56530012 + 41 4.46e-07 TTATTGTGAT TGATGATGTCAT CTTCTAAGGC chr1:220118967-220119467 + 16 4.46e-07 CAGAATGATT GGCTGATGTCAT AGTTGCTCAT chr7:133492058-133492558 + 76 7.70e-07 CTTGGGTAGG TAATGATGTCAT TTGTTAAGAC chr14:101073135-10107363 - 38 7.70e-07 GTTTCATAGG TAATGATGTCAT TTATGAGGCT chr2:191321758-191322258 - 1 9.89e-07 GTGGAAGCAG GGGTGAGGTCAT chr9:85743217-85743717 - 83 1.09e-06 GATGAA GAGTGATGTCAC ATTCCCAGGG chr1:156660096-156660596 + 43 1.39e-06 GAGGTTGAGA GGATGAGGTCAC TCAGAGAACT chr3:9976982-9977482 + 52 2.83e-06 TTCCTAAGAA GGGTGAGGTCAC CATGAGAGCA chr5:158451532-158452032 + 66 3.20e-06 CTGCCAAAGC CGATGATGTCAT CATCACTAGC chr22:19984229-19984729 - 60 3.20e-06 CCTGCCACCC GGGTGAAGTCAT CCCTCGTTTT chr5:139517845-139518345 - 19 4.34e-06 GCCCCGGGCC GGATGAAGTCAC CGGCCGGAGG chr17:82065712-82066212 + 19 5.14e-06 ggaggtcaga ggctgaggtcaC CACCGTACCC chr15:67792434-67792934 + 27 5.14e-06 AGTCATTCCA AGATTATGTCAT TGGATGTCAT chr17:77233787-77234287 + 12 5.14e-06 acaaatacaG GGATGAGGTCAG CAAAATGAGT chr5:32489750-32490250 + 76 5.14e-06 TTGGCCAAAT AGATTATGTCAT TTTGACTATT chr1:233112860-233113360 - 60 6.60e-06 GGTGATGACA AGCTGATGTCAC CCAACTGGCC chr16:1651610-1652110 + 47 7.48e-06 CAGAAAGGTG GACTGAGGTCAC ACAGGTCATC chr16:1651063-1651563 + 20 7.48e-06 CGGAGAGCTG GACTGAGGTCAC ACACAGGTTA chr19:43201303-43201803 - 17 7.48e-06 TCATAGGTAT GAATGAGGTCAG CCGGTTGCCA chr10:60951290-60951790 - 38 8.60e-06 AGTGTTTAAT GGCTTATGTCAC CCACATGTGA chr6:154852591-154853091 - 10 9.40e-06 AAAGTAAACA GAGTTAGGTCAT GATGAGTCC chr10:5548777-5549277 + 68 1.02e-05 CTCTATCTCA GGGTGACGTCAC CTCATACACA chr17:60173281-60173781 + 52 1.11e-05 ATAGCCTAGT GTCTGATGTCAT CAGTCAGCAC chr19:50896568-50897068 - 7 1.11e-05 GTGTAGCCAA GCGTGATGTCAC ATGGGA chr19:50406372-50406872 - 36 1.23e-05 GCAGGTCAAA GAGTGAGGTCAG ACGTGGGGGC chr4:140756863-140757363 - 64 1.23e-05 TCAAGGAAAG AAGTGATGTAAT GCACTTAGCT chr3:100002792-100003292 + 8 1.23e-05 AGAGGAG GGATGACGTAAT GGATTGTGCA chr12:30599542-30600042 - 8 1.23e-05 ATTATGATCT AAGTGATGTAAT GGCAAAA chr10:112793338-11279383 + 56 1.49e-05 ACATGTATCA TGCTGAAGTCAT AAAAATGAAG chr10:75379136-75379636 + 51 1.58e-05 TTCGGATGGA TAATAATGTCAT TTGCTTGATG chr22:37570297-37570797 - 40 1.58e-05 AAGGGCACTG GGGTGATGTCAA GGGGAGGGCC chr17:39800946-39801446 + 12 1.89e-05 AGGCACAAAA GGGTGATGTTAT TTAAGTGTTT chr8:37472187-37472687 + 28 1.89e-05 AACGCGCTGC TAATGAGGTCAG CTACAGAACT chr17:27353541-27354041 - 88 1.89e-05 A CGATGATGTCAG CGGAGGAAAG chr17:46101207-46101707 + 1 2.07e-05 . CAATGATGTAAT CCTAACTGCA chr1:110647226-110647726 + 80 2.07e-05 aacggcaact ggatgaggtaag tgtggttga chr5:14156521-14157021 + 88 2.81e-05 CAAACAAAAC AGATGAAGTAAT G chr1:212608407-212608907 - 63 2.81e-05 GCCAGTCCCA GGCTGACGTAAT GCTATTAATA chr20:20215975-20216475 + 44 2.81e-05 GGGAGGCGCC AGATGGTGTCAT TAACACGAAC chr11:64743492-64743992 - 81 3.03e-05 GGAGTTGC TAATGGTGTCAT GCACCCACCG chr20:35319258-35319758 - 29 3.72e-05 GGTAACATTT TTATTATGTCAT AAAAAGTGCA chr17:8376586-8377086 - 45 3.72e-05 GAACGGGCCC GAGTTAAGTCAC TGGCTTAGCC chr11:110305462-11030596 - 83 4.55e-05 ATTATG TACTTATGTAAT TTGAACTTAG chr10:87845961-87846461 + 38 5.14e-05 gacagaaacg tcattatgtcac gcaagactAG chr7:33669128-33669628 - 44 5.14e-05 CTGTTATTCT TGGTAATGTAAT TGTCATGGAT chr1:150876709-150877209 + 33 5.49e-05 GTCAATGACC GAGTAACGTCAT TGAAATGCAA chr19:43572070-43572570 + 59 6.21e-05 acttgtgcag acattatgtcac cgaattttca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:78558322-78558822 5.4e-08 82_[+8]_6 chr20:3173057-3173557 5.4e-08 34_[-8]_54 chr19:38667025-38667525 1.6e-07 31_[+8]_57 chr17:7836626-7837126 2.2e-07 32_[+8]_56 chr10:94673526-94674026 2.8e-07 60_[-8]_28 chr15:70494069-70494569 4.5e-07 80_[+8]_8 chr6:56529512-56530012 4.5e-07 40_[+8]_48 chr1:220118967-220119467 4.5e-07 15_[+8]_73 chr7:133492058-133492558 7.7e-07 75_[+8]_13 chr14:101073135-10107363 7.7e-07 37_[-8]_51 chr2:191321758-191322258 9.9e-07 [-8]_88 chr9:85743217-85743717 1.1e-06 82_[-8]_6 chr1:156660096-156660596 1.4e-06 42_[+8]_46 chr3:9976982-9977482 2.8e-06 51_[+8]_37 chr5:158451532-158452032 3.2e-06 65_[+8]_23 chr22:19984229-19984729 3.2e-06 59_[-8]_29 chr5:139517845-139518345 4.3e-06 18_[-8]_70 chr17:82065712-82066212 5.1e-06 18_[+8]_70 chr15:67792434-67792934 5.1e-06 26_[+8]_62 chr17:77233787-77234287 5.1e-06 11_[+8]_77 chr5:32489750-32490250 5.1e-06 75_[+8]_13 chr1:233112860-233113360 6.6e-06 59_[-8]_29 chr16:1651610-1652110 7.5e-06 46_[+8]_42 chr16:1651063-1651563 7.5e-06 19_[+8]_69 chr19:43201303-43201803 7.5e-06 16_[-8]_72 chr10:60951290-60951790 8.6e-06 37_[-8]_51 chr6:154852591-154853091 9.4e-06 9_[-8]_79 chr10:5548777-5549277 1e-05 67_[+8]_21 chr17:60173281-60173781 1.1e-05 51_[+8]_37 chr19:50896568-50897068 1.1e-05 6_[-8]_82 chr19:50406372-50406872 1.2e-05 35_[-8]_53 chr4:140756863-140757363 1.2e-05 63_[-8]_25 chr3:100002792-100003292 1.2e-05 7_[+8]_81 chr12:30599542-30600042 1.2e-05 7_[-8]_81 chr10:112793338-11279383 1.5e-05 55_[+8]_33 chr10:75379136-75379636 1.6e-05 50_[+8]_38 chr22:37570297-37570797 1.6e-05 39_[-8]_49 chr17:39800946-39801446 1.9e-05 11_[+8]_77 chr8:37472187-37472687 1.9e-05 27_[+8]_61 chr17:27353541-27354041 1.9e-05 87_[-8]_1 chr17:46101207-46101707 2.1e-05 [+8]_88 chr1:110647226-110647726 2.1e-05 79_[+8]_9 chr5:14156521-14157021 2.8e-05 87_[+8]_1 chr1:212608407-212608907 2.8e-05 62_[-8]_26 chr20:20215975-20216475 2.8e-05 43_[+8]_45 chr11:64743492-64743992 3e-05 80_[-8]_8 chr20:35319258-35319758 3.7e-05 28_[-8]_60 chr17:8376586-8377086 3.7e-05 44_[-8]_44 chr11:110305462-11030596 4.5e-05 82_[-8]_6 chr10:87845961-87846461 5.1e-05 37_[+8]_51 chr7:33669128-33669628 5.1e-05 43_[-8]_45 chr1:150876709-150877209 5.5e-05 32_[+8]_56 chr19:43572070-43572570 6.2e-05 58_[+8]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRTGATGTCAT width=12 seqs=53 chr17:78558322-78558822 ( 83) GGATGATGTCAT 1 chr20:3173057-3173557 ( 35) GGATGATGTCAT 1 chr19:38667025-38667525 ( 32) GGGTGATGTCAT 1 chr17:7836626-7837126 ( 33) GGATGATGTCAC 1 chr10:94673526-94674026 ( 61) GAGTGATGTCAT 1 chr15:70494069-70494569 ( 81) GGATGAGGTCAT 1 chr6:56529512-56530012 ( 41) TGATGATGTCAT 1 chr1:220118967-220119467 ( 16) GGCTGATGTCAT 1 chr7:133492058-133492558 ( 76) TAATGATGTCAT 1 chr14:101073135-10107363 ( 38) TAATGATGTCAT 1 chr2:191321758-191322258 ( 1) GGGTGAGGTCAT 1 chr9:85743217-85743717 ( 83) GAGTGATGTCAC 1 chr1:156660096-156660596 ( 43) GGATGAGGTCAC 1 chr3:9976982-9977482 ( 52) GGGTGAGGTCAC 1 chr5:158451532-158452032 ( 66) CGATGATGTCAT 1 chr22:19984229-19984729 ( 60) GGGTGAAGTCAT 1 chr5:139517845-139518345 ( 19) GGATGAAGTCAC 1 chr17:82065712-82066212 ( 19) GGCTGAGGTCAC 1 chr15:67792434-67792934 ( 27) AGATTATGTCAT 1 chr17:77233787-77234287 ( 12) GGATGAGGTCAG 1 chr5:32489750-32490250 ( 76) AGATTATGTCAT 1 chr1:233112860-233113360 ( 60) AGCTGATGTCAC 1 chr16:1651610-1652110 ( 47) GACTGAGGTCAC 1 chr16:1651063-1651563 ( 20) GACTGAGGTCAC 1 chr19:43201303-43201803 ( 17) GAATGAGGTCAG 1 chr10:60951290-60951790 ( 38) GGCTTATGTCAC 1 chr6:154852591-154853091 ( 10) GAGTTAGGTCAT 1 chr10:5548777-5549277 ( 68) GGGTGACGTCAC 1 chr17:60173281-60173781 ( 52) GTCTGATGTCAT 1 chr19:50896568-50897068 ( 7) GCGTGATGTCAC 1 chr19:50406372-50406872 ( 36) GAGTGAGGTCAG 1 chr4:140756863-140757363 ( 64) AAGTGATGTAAT 1 chr3:100002792-100003292 ( 8) GGATGACGTAAT 1 chr12:30599542-30600042 ( 8) AAGTGATGTAAT 1 chr10:112793338-11279383 ( 56) TGCTGAAGTCAT 1 chr10:75379136-75379636 ( 51) TAATAATGTCAT 1 chr22:37570297-37570797 ( 40) GGGTGATGTCAA 1 chr17:39800946-39801446 ( 12) GGGTGATGTTAT 1 chr8:37472187-37472687 ( 28) TAATGAGGTCAG 1 chr17:27353541-27354041 ( 88) CGATGATGTCAG 1 chr17:46101207-46101707 ( 1) CAATGATGTAAT 1 chr1:110647226-110647726 ( 80) GGATGAGGTAAG 1 chr5:14156521-14157021 ( 88) AGATGAAGTAAT 1 chr1:212608407-212608907 ( 63) GGCTGACGTAAT 1 chr20:20215975-20216475 ( 44) AGATGGTGTCAT 1 chr11:64743492-64743992 ( 81) TAATGGTGTCAT 1 chr20:35319258-35319758 ( 29) TTATTATGTCAT 1 chr17:8376586-8377086 ( 45) GAGTTAAGTCAC 1 chr11:110305462-11030596 ( 83) TACTTATGTAAT 1 chr10:87845961-87846461 ( 38) TCATTATGTCAC 1 chr7:33669128-33669628 ( 44) TGGTAATGTAAT 1 chr1:150876709-150877209 ( 33) GAGTAACGTCAT 1 chr19:43572070-43572570 ( 59) ACATTATGTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.1555 E= 8.2e-009 -67 -220 117 -21 50 -220 112 -267 103 -46 30 -1237 -1237 -1237 -1237 206 -208 -1237 157 -50 200 -1237 -278 -1237 -135 -178 -8 128 -1237 -1237 194 -1237 -1237 -1237 -1237 206 -50 164 -1237 -367 206 -1237 -1237 -1237 -367 12 -120 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 53 E= 8.2e-009 0.150943 0.056604 0.584906 0.207547 0.339623 0.056604 0.566038 0.037736 0.490566 0.188679 0.320755 0.000000 0.000000 0.000000 0.000000 1.000000 0.056604 0.000000 0.773585 0.169811 0.962264 0.000000 0.037736 0.000000 0.094340 0.075472 0.245283 0.584906 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.169811 0.811321 0.000000 0.018868 1.000000 0.000000 0.000000 0.000000 0.018868 0.283019 0.113208 0.584906 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTGATGTCAT MEME-8 regular expression -------------------------------------------------------------------------------- [GT][GA][AG]TGA[TG]GTCA[TC] -------------------------------------------------------------------------------- Time 2391.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 width = 31 sites = 10 llr = 227 E-value = 9.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 Description -------------------------------------------------------------------------------- Simplified A :32:121:1:5:1:::1:214:2:::::77: pos.-specific C 21::421::515::3:2a:6162591:1::: probability G 138a318a93449a:85::344641:a2::2 matrix T 73::25:::2:1::722:8:1::1:9:7338 bits 2.1 1.9 * * * * * 1.6 * * * * ** 1.4 * ** ** * *** Relative 1.2 ** ** **** ** *** *** Entropy 1.0 ** *** **** ** * *** *** (32.7 bits) 0.8 * ** *** **** ** * ******* 0.6 * ** *** ****** *** ********** 0.4 * ** ********** *** ********** 0.2 ******************************* 0.0 ------------------------------- Multilevel TAGGCTGGGCACGGTGGCTCACGCCTGTAAT consensus CGA GA GGG CTC AGGGAG GTTG sequence T TC T T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:150876709-150877209 + 70 1.20e-15 ATGGGTATTT TAggctgggcgcggtggctcgcgtctgtaat chr17:46101207-46101707 + 61 7.99e-15 AACAATTTAG TCAgctgggcacggtggctcaggcctgtaat cccagcact chr12:101459858-10146035 + 69 1.50e-13 AAACTTGGCC TGggccaggggcggtggctcaggcctgtaat c chr18:50870140-50870640 - 1 2.55e-13 GAACTTAAAC TTGGCTGGGCACAGTGACTCACACCTGTAAT chr12:122368513-12236901 + 69 3.04e-11 aatacaaaaa ttagtcgggcatggtggcaagcacctgtaat c chr8:37701106-37701606 + 12 2.03e-10 GTGCAGTGCG TAGGATGGGGCCGGTTTCTCTGCGCTGTTTT TGGTTGTCCA chr19:32972076-32972576 + 11 4.00e-10 GATCTCTAGA CTGGGACGGTGGGGTTCCTGCCGGCTGTATT CGGGCCTTGG chr19:35716904-35717404 - 39 4.24e-10 GGCTGCCTCC TGGGGAGGACGGGGCGCCTCGGGGGTGGAAG AAGTGTCCAT chr6:34248536-34249036 + 30 5.94e-10 GGGGGCATGC CAGGGTGGGGAGGGCGTCAGGCCGCTGCTAG GATGCGGGCC chr17:50866476-50866976 + 33 8.60e-10 GAGAGAGAAA GGGGTGGGGTAGGGCGGCTGACGCCCGGTTT AGGCGGAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:150876709-150877209 1.2e-15 69_[+9] chr17:46101207-46101707 8e-15 60_[+9]_9 chr12:101459858-10146035 1.5e-13 68_[+9]_1 chr18:50870140-50870640 2.6e-13 [-9]_69 chr12:122368513-12236901 3e-11 68_[+9]_1 chr8:37701106-37701606 2e-10 11_[+9]_58 chr19:32972076-32972576 4e-10 10_[+9]_59 chr19:35716904-35717404 4.2e-10 38_[-9]_31 chr6:34248536-34249036 5.9e-10 29_[+9]_40 chr17:50866476-50866976 8.6e-10 32_[+9]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT width=31 seqs=10 chr1:150876709-150877209 ( 70) TAGGCTGGGCGCGGTGGCTCGCGTCTGTAAT 1 chr17:46101207-46101707 ( 61) TCAGCTGGGCACGGTGGCTCAGGCCTGTAAT 1 chr12:101459858-10146035 ( 69) TGGGCCAGGGGCGGTGGCTCAGGCCTGTAAT 1 chr18:50870140-50870640 ( 1) TTGGCTGGGCACAGTGACTCACACCTGTAAT 1 chr12:122368513-12236901 ( 69) TTAGTCGGGCATGGTGGCAAGCACCTGTAAT 1 chr8:37701106-37701606 ( 12) TAGGATGGGGCCGGTTTCTCTGCGCTGTTTT 1 chr19:32972076-32972576 ( 11) CTGGGACGGTGGGGTTCCTGCCGGCTGTATT 1 chr19:35716904-35717404 ( 39) TGGGGAGGACGGGGCGCCTCGGGGGTGGAAG 1 chr6:34248536-34249036 ( 30) CAGGGTGGGGAGGGCGTCAGGCCGCTGCTAG 1 chr17:50866476-50866976 ( 33) GGGGTGGGGTAGGGCGGCTGACGCCCGGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.2874 E= 9.0e-005 -997 -38 -138 154 32 -138 21 32 -26 -997 162 -997 -997 -997 194 -997 -126 62 21 -26 -26 -38 -138 106 -126 -138 162 -997 -997 -997 194 -997 -126 -997 179 -997 -997 94 21 -26 106 -138 62 -997 -997 94 62 -126 -126 -997 179 -997 -997 -997 194 -997 -997 21 -997 154 -997 -997 162 -26 -126 -38 94 -26 -997 194 -997 -997 -26 -997 -997 173 -126 121 21 -997 74 -138 62 -126 -997 121 62 -997 -26 -38 121 -997 -997 94 62 -126 -997 179 -138 -997 -997 -138 -997 190 -997 -997 194 -997 -997 -138 -38 154 154 -997 -997 32 154 -997 -997 32 -997 -997 -38 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 10 E= 9.0e-005 0.000000 0.200000 0.100000 0.700000 0.300000 0.100000 0.300000 0.300000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.400000 0.300000 0.200000 0.200000 0.200000 0.100000 0.500000 0.100000 0.100000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.500000 0.300000 0.200000 0.500000 0.100000 0.400000 0.000000 0.000000 0.500000 0.400000 0.100000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.800000 0.200000 0.100000 0.200000 0.500000 0.200000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.100000 0.600000 0.300000 0.000000 0.400000 0.100000 0.400000 0.100000 0.000000 0.600000 0.400000 0.000000 0.200000 0.200000 0.600000 0.000000 0.000000 0.500000 0.400000 0.100000 0.000000 0.900000 0.100000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.200000 0.700000 0.700000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 0.200000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDGGBTGGGSRSGGTGGCTSRSGSCTGTAAT MEME-9 regular expression -------------------------------------------------------------------------------- [TC][AGT][GA]G[CGT][TAC]GGG[CGT][AG][CG]GG[TC][GT][GCT]C[TA][CG][AG][CG][GAC][CG]CTG[TG][AT][AT][TG] -------------------------------------------------------------------------------- Time 2661.59 secs. ******************************************************************************** ******************************************************************************** MOTIF THHAWTWTDWTRTKTWTWAWA MEME-10 width = 21 sites = 33 llr = 412 E-value = 7.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 Description -------------------------------------------------------------------------------- Simplified A :456535123:4::14:564a pos.-specific C 23211::::12::1::2:22: probability G :::1::2:32:513:2:13:: matrix T 833257484581868584:4: bits 2.1 1.9 * 1.6 * 1.4 * * Relative 1.2 * * * * * * * Entropy 1.0 * * * * * * * * (18.0 bits) 0.8 * ** * * *** * * 0.6 * **** *********** 0.4 ********* *********** 0.2 ********************* 0.0 --------------------- Multilevel TAAAATATTTTGTTTTTAAAA consensus TTTTAT GA A G A TGT sequence CC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr17:43368333-43368833 + 26 1.13e-09 cacattaggc taaatttttgtatttttagta gagactgggt chr7:83267079-83267579 + 62 1.26e-08 CTGAAGGTTT TACAATGTTTTATTTGTTAAA CATTTTTTTC chr16:10738686-10739186 + 4 1.26e-08 ggc taatttttggtatttttagta gagacggagt chr5:72246962-72247462 + 41 2.96e-08 GCAAAGTGAT TTCATTATACTGTTTATAAAA ACACAGCTTA chr5:76585789-76586289 + 39 2.96e-08 AATTGGTTCA TAAAATATTATGGTTTTGAAA ATGTCAGCAT chr5:136729903-136730403 + 44 4.40e-08 TCTCCAGCTT TAAAATGTTATGTGATTAATA GGAAAAAGAG chr20:44362373-44362873 - 76 5.01e-08 AATC TCAATTTCTTTGTTTATAAAA TGGAGATAAT chr6:151357951-151358451 + 54 7.29e-08 AGCAAGTGCC TACATTTTGTTATTTTTGGCA TTACTACAGA chr5:83097818-83098318 + 61 1.04e-07 AAACTAATGA TTATTAATGGTATTTGTAAAA GATAAGCAGA chr5:6419268-6419768 - 2 1.65e-07 TTATTTAGTA CATAATTTTTTATTTACACTA T chr5:124740978-124741478 + 76 2.55e-07 TTTCATAAGG TCCAATTTATCATGTTTTACA TGAC chrUn_KI270467v1:1909-24 + 71 2.83e-07 tttgggcaac tttaatatattatgtacagca tataatata chr10:33388248-33388748 - 8 3.14e-07 ACCTGTATTA TCTTTAATTTTGTTTTTGCAA ACTGATA chr1:28373316-28373816 + 74 3.85e-07 acgcctggcc CATAAttttataatttttata gagaca chr16:25049561-25050061 - 42 3.85e-07 TCATGTATTG TACATAATTGTATGTGTTACA CTTTTATAGG chr5:36928888-36929388 + 73 3.85e-07 tcaccaacag ttaatagtgtctttttttata acattat chr21:38985020-38985520 + 2 4.26e-07 G CAAATTATTATGTGCTTAAAA AAAAAATCAA chr10:44752825-44753325 + 39 7.60e-07 AGGAGAGAGG TTTTAATAGTTGTTTATACAA TCTGCCCAGC chr1:151494721-151495221 - 71 9.14e-07 AGTCATTCA TAAAAAATTTTTTCTACAGAA GTGGGCAGAA chr19:16279154-16279654 + 13 1.00e-06 GACTTTGTAa tttgatttgatgtgatttgta tatgaGTCAA chrX:38061250-38061750 - 13 1.09e-06 GGTGGGAATT TCAATTTTATGGTCTATTAAA TATAGAGACA chr3:168974988-168975488 + 52 1.42e-06 CTGGCTCCAG TCAATGAAGTTGTGTATTATA TGCCCCCAGG chr20:53609871-53610371 - 40 2.00e-06 CTTGACTTGT CTCATTGAGTTGTTTACAAAA GGACTGTACC chr20:35319258-35319758 - 70 2.17e-06 TGTGCCTGCC TCTGCTATAATATTTGTAGTA TGTGTTAAGT chr6:158040305-158040805 - 25 2.17e-06 ATTTATCTTA CATCCTTTTTTTTTTTTAATA GACTGAGGGG chr5:17305893-17306393 - 48 2.55e-06 TTAAAGGAAT CTCTAATTTATTTGTTTAACA CGCAACTGCT chr14:68140221-68140721 - 44 2.55e-06 TTGGTGGAGG TAACATTTACTGTTTACTGTA GCTGTGGTTG chr1:110647226-110647726 - 49 3.23e-06 AGTTGCCGTT TTAGAAGTGTTGTTTATTATT CCAGGAAACT chr7:111092806-111093306 - 56 3.49e-06 TTAATTGACT TCTTATATTACATGTTGTAAA CTGACTCATT chr19:33293300-33293800 + 3 4.72e-06 AA TCAAATAAAACGTGTTTGCAA ATTGTAAATC chr5:136123163-136123663 - 29 7.25e-06 ATGTATCATT TACAATATGGTGGCATTACTA ATGTGCCACA chr5:14439309-14439809 + 18 8.32e-06 CAAAGTCAAC TTTTTAATAACGGTTGTAGTA ACTGAAACCT chr17:32015515-32016015 - 42 9.52e-06 AGATCATGTT TCAGTTATGGTAGTAACTAAA ACAATATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:43368333-43368833 1.1e-09 25_[+10]_54 chr7:83267079-83267579 1.3e-08 61_[+10]_18 chr16:10738686-10739186 1.3e-08 3_[+10]_76 chr5:72246962-72247462 3e-08 40_[+10]_39 chr5:76585789-76586289 3e-08 38_[+10]_41 chr5:136729903-136730403 4.4e-08 43_[+10]_36 chr20:44362373-44362873 5e-08 75_[-10]_4 chr6:151357951-151358451 7.3e-08 53_[+10]_26 chr5:83097818-83098318 1e-07 60_[+10]_19 chr5:6419268-6419768 1.6e-07 1_[-10]_78 chr5:124740978-124741478 2.5e-07 75_[+10]_4 chrUn_KI270467v1:1909-24 2.8e-07 70_[+10]_9 chr10:33388248-33388748 3.1e-07 7_[-10]_72 chr1:28373316-28373816 3.9e-07 73_[+10]_6 chr16:25049561-25050061 3.9e-07 41_[-10]_38 chr5:36928888-36929388 3.9e-07 72_[+10]_7 chr21:38985020-38985520 4.3e-07 1_[+10]_78 chr10:44752825-44753325 7.6e-07 38_[+10]_41 chr1:151494721-151495221 9.1e-07 70_[-10]_9 chr19:16279154-16279654 1e-06 12_[+10]_67 chrX:38061250-38061750 1.1e-06 12_[-10]_67 chr3:168974988-168975488 1.4e-06 51_[+10]_28 chr20:53609871-53610371 2e-06 39_[-10]_40 chr20:35319258-35319758 2.2e-06 69_[-10]_10 chr6:158040305-158040805 2.2e-06 24_[-10]_55 chr5:17305893-17306393 2.6e-06 47_[-10]_32 chr14:68140221-68140721 2.6e-06 43_[-10]_36 chr1:110647226-110647726 3.2e-06 48_[-10]_31 chr7:111092806-111093306 3.5e-06 55_[-10]_24 chr19:33293300-33293800 4.7e-06 2_[+10]_77 chr5:136123163-136123663 7.3e-06 28_[-10]_51 chr5:14439309-14439809 8.3e-06 17_[+10]_62 chr17:32015515-32016015 9.5e-06 41_[-10]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF THHAWTWTDWTRTKTWTWAWA width=21 seqs=33 chr17:43368333-43368833 ( 26) TAAATTTTTGTATTTTTAGTA 1 chr7:83267079-83267579 ( 62) TACAATGTTTTATTTGTTAAA 1 chr16:10738686-10739186 ( 4) TAATTTTTGGTATTTTTAGTA 1 chr5:72246962-72247462 ( 41) TTCATTATACTGTTTATAAAA 1 chr5:76585789-76586289 ( 39) TAAAATATTATGGTTTTGAAA 1 chr5:136729903-136730403 ( 44) TAAAATGTTATGTGATTAATA 1 chr20:44362373-44362873 ( 76) TCAATTTCTTTGTTTATAAAA 1 chr6:151357951-151358451 ( 54) TACATTTTGTTATTTTTGGCA 1 chr5:83097818-83098318 ( 61) TTATTAATGGTATTTGTAAAA 1 chr5:6419268-6419768 ( 2) CATAATTTTTTATTTACACTA 1 chr5:124740978-124741478 ( 76) TCCAATTTATCATGTTTTACA 1 chrUn_KI270467v1:1909-24 ( 71) TTTAATATATTATGTACAGCA 1 chr10:33388248-33388748 ( 8) TCTTTAATTTTGTTTTTGCAA 1 chr1:28373316-28373816 ( 74) CATAATTTTATAATTTTTATA 1 chr16:25049561-25050061 ( 42) TACATAATTGTATGTGTTACA 1 chr5:36928888-36929388 ( 73) TTAATAGTGTCTTTTTTTATA 1 chr21:38985020-38985520 ( 2) CAAATTATTATGTGCTTAAAA 1 chr10:44752825-44753325 ( 39) TTTTAATAGTTGTTTATACAA 1 chr1:151494721-151495221 ( 71) TAAAAAATTTTTTCTACAGAA 1 chr19:16279154-16279654 ( 13) TTTGATTTGATGTGATTTGTA 1 chrX:38061250-38061750 ( 13) TCAATTTTATGGTCTATTAAA 1 chr3:168974988-168975488 ( 52) TCAATGAAGTTGTGTATTATA 1 chr20:53609871-53610371 ( 40) CTCATTGAGTTGTTTACAAAA 1 chr20:35319258-35319758 ( 70) TCTGCTATAATATTTGTAGTA 1 chr6:158040305-158040805 ( 25) CATCCTTTTTTTTTTTTAATA 1 chr5:17305893-17306393 ( 48) CTCTAATTTATTTGTTTAACA 1 chr14:68140221-68140721 ( 44) TAACATTTACTGTTTACTGTA 1 chr1:110647226-110647726 ( 49) TTAGAAGTGTTGTTTATTATT 1 chr7:111092806-111093306 ( 56) TCTTATATTACATGTTGTAAA 1 chr19:33293300-33293800 ( 3) TCAAATAAAACGTGTTTGCAA 1 chr5:136123163-136123663 ( 29) TACAATATGGTGGCATTACTA 1 chr5:14439309-14439809 ( 18) TTTTTAATAACGGTTGTAGTA 1 chr17:32015515-32016015 ( 42) TCAGTTATGGTAGTAACTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.5149 E= 7.1e-004 -1169 -51 -1169 177 82 7 -1169 34 92 -10 -1169 34 133 -210 -110 -18 101 -210 -1169 92 18 -1169 -310 154 92 -1169 -78 71 -99 -310 -1169 182 1 -1169 36 82 34 -210 -51 92 -1169 -78 -310 177 71 -1169 90 -99 -298 -1169 -110 182 -1169 -151 22 133 -99 -310 -1169 182 60 -1169 -78 101 -1169 -51 -310 171 110 -1169 -110 60 126 -78 7 -1169 82 -78 -1169 82 201 -1169 -1169 -298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 33 E= 7.1e-004 0.000000 0.181818 0.000000 0.818182 0.424242 0.272727 0.000000 0.303030 0.454545 0.242424 0.000000 0.303030 0.606061 0.060606 0.121212 0.212121 0.484848 0.060606 0.000000 0.454545 0.272727 0.000000 0.030303 0.696970 0.454545 0.000000 0.151515 0.393939 0.121212 0.030303 0.000000 0.848485 0.242424 0.000000 0.333333 0.424242 0.303030 0.060606 0.181818 0.454545 0.000000 0.151515 0.030303 0.818182 0.393939 0.000000 0.484848 0.121212 0.030303 0.000000 0.121212 0.848485 0.000000 0.090909 0.303030 0.606061 0.121212 0.030303 0.000000 0.848485 0.363636 0.000000 0.151515 0.484848 0.000000 0.181818 0.030303 0.787879 0.515152 0.000000 0.121212 0.363636 0.575758 0.151515 0.272727 0.000000 0.424242 0.151515 0.000000 0.424242 0.969697 0.000000 0.000000 0.030303 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THHAWTWTDWTRTKTWTWAWA MEME-10 regular expression -------------------------------------------------------------------------------- T[ATC][ATC][AT][AT][TA][AT]T[TGA][TA]T[GA]T[TG]T[TA]T[AT][AG][AT]A -------------------------------------------------------------------------------- Time 2926.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:48407054-48407554 3.50e-02 81_[-4(1.84e-05)]_3 chr5:37738045-37738545 2.37e-01 71_[+3(6.81e-05)]_20 chr1:10528325-10528825 4.08e-01 20_[-3(2.58e-05)]_71 chr11:76208714-76209214 1.96e-01 5_[-1(3.91e-05)]_79 chr17:67993857-67994357 6.97e-05 33_[-7(5.62e-10)]_45 chr19:36214287-36214787 5.94e-02 20_[-4(3.43e-06)]_64 chr11:129143285-12914378 2.12e-01 41_[+3(1.09e-05)]_50 chr1:39261798-39262298 2.65e-01 100 chr6:138088212-138088712 4.89e-02 63_[-4(3.99e-06)]_21 chr19:1205127-1205627 6.39e-02 14_[-6(6.14e-06)]_65 chr1:2146929-2147429 7.60e-01 100 chr9:86741346-86741846 3.53e-01 100 chr13:100363832-10036433 4.31e-06 15_[-3(1.09e-05)]_34_[+4(1.05e-08)]_\ 26 chr22:27212648-27213148 2.68e-01 100 chrUn_KI270467v1:1909-24 2.89e-01 28_[+10(2.55e-06)]_21_\ [+10(2.83e-07)]_9 chr5:94469739-94470239 3.03e-01 100 chr5:173057131-173057631 7.79e-04 4_[-1(3.91e-05)]_5_[-6(4.23e-08)]_\ 54 chr18:3409073-3409573 5.42e-16 1_[-4(5.79e-07)]_40_[+3(3.64e-06)]_\ 3_[-2(1.43e-15)] chr3:4986778-4987278 7.66e-01 100 chr1:153967126-153967626 2.96e-01 100 chr6:33677652-33678152 5.15e-02 14_[+1(1.55e-05)]_52_[+1(2.40e-06)]_\ 2 chr21:39313560-39314060 3.43e-02 66_[-6(2.45e-07)]_13 chr2:200786431-200786931 4.34e-01 100 chr12:120528712-12052921 1.68e-01 5_[+1(8.34e-05)]_[+1(7.40e-06)]_63 chrX:48917323-48917823 3.57e-01 100 chr5:54302187-54302687 2.44e-01 100 chr6:154852591-154853091 9.88e-02 9_[-8(9.40e-06)]_79 chr2:66364341-66364841 7.38e-03 39_[+3(1.09e-05)]_26_[-4(8.20e-06)]_\ 10 chr15:66701042-66701542 7.52e-02 38_[+6(3.32e-06)]_41 chr4:111883532-111884032 5.17e-02 49_[+2(5.01e-05)]_20 chr2:131803166-131803666 1.40e-03 6_[-1(8.47e-07)]_23_[-6(8.26e-07)]_\ 16_[-1(4.53e-06)]_2 chr5:126000454-126000954 9.75e-01 100 chr1:237166688-237167188 2.75e-02 57_[+4(1.96e-06)]_27 chr15:81888762-81889262 3.69e-02 34_[+4(2.52e-06)]_50 chr17:49976194-49976694 6.22e-01 100 chr1:24413486-24413986 6.87e-02 27_[+6(3.55e-05)]_52 chr1:228861052-228861552 4.58e-01 100 chr10:33388248-33388748 1.58e-02 7_[-10(3.14e-07)]_72 chr18:59265109-59265609 5.24e-07 19_[-7(9.30e-09)]_11_[-1(1.30e-05)]_\ 32 chr7:111092806-111093306 9.36e-03 46_[-3(2.22e-05)]_[-10(3.49e-06)]_\ 24 chr6:21748593-21749093 3.86e-02 59_[+2(4.11e-05)]_10 chr6:32636642-32637142 2.00e-20 12_[-7(3.48e-11)]_1_[-1(2.62e-07)]_\ [-5(2.78e-17)]_18 chr5:179858846-179859346 8.87e-01 100 chr17:81393845-81394345 9.78e-01 100 chr19:2529423-2529923 7.07e-01 100 chr10:129525340-12952584 6.89e-01 100 chr3:158488700-158489200 3.16e-01 100 chr5:139517845-139518345 1.15e-02 18_[-8(4.34e-06)]_70 chr19:8240277-8240777 7.75e-09 14_[+7(6.01e-09)]_30_[-6(4.29e-07)]_\ 3_[-3(4.40e-05)]_1 chr7:100895990-100896490 4.44e-02 70_[+6(1.19e-05)]_9 chr17:71438651-71439151 1.12e-01 100 chr6:158040305-158040805 9.82e-03 24_[-10(2.17e-06)]_34_\ [+3(2.22e-05)]_12 chr1:6701552-6702052 3.62e-01 51_[+1(2.20e-05)]_33 chr7:108403521-108404021 4.10e-01 100 chr12:1661882-1662382 7.44e-01 100 chr2:202822384-202822884 1.53e-02 68_[-4(2.72e-06)]_16 chr8:37380759-37381259 1.38e-01 100 chr1:198763247-198763747 2.52e-05 60_[+4(2.16e-07)]_24 chr1:38785534-38786034 8.84e-01 100 chr17:81868265-81868765 4.08e-01 40_[-6(9.72e-05)]_39 chr20:25862677-25863177 1.48e-02 [-4(1.63e-09)]_84 chr18:56651361-56651861 2.94e-05 75_[-1(5.62e-10)]_9 chr21:17501366-17501866 2.12e-02 71_[-3(9.22e-05)]_20 chr11:118997907-11899840 1.32e-02 24_[-1(1.19e-05)]_60 chr6:149057426-149057926 4.21e-01 100 chr12:101459858-10146035 4.10e-08 68_[+9(1.50e-13)]_1 chr14:68140221-68140721 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2.55e-02 33_[+6(4.46e-05)]_46 chr19:39032983-39033483 1.18e-24 18_[+3(3.64e-06)]_3_[-2(2.85e-17)]_\ 12_[-1(1.44e-07)]_11 chr5:99900389-99900889 3.66e-01 100 chr12:57111954-57112454 6.21e-05 [-4(1.63e-09)]_52_[-4(1.63e-09)]_\ [-4(1.63e-09)] chr6:90368929-90369429 3.98e-02 34_[+3(9.22e-05)]_4_[+3(3.64e-06)]_\ 44 chr17:68381041-68381541 1.83e-01 23_[-4(3.52e-05)]_61 chr19:40920932-40921432 1.45e-01 63_[-3(2.22e-05)]_28 chr1:228781067-228781567 7.93e-01 100 chr11:62771363-62771863 2.63e-05 47_[+1(1.44e-07)]_3_[+6(3.26e-07)]_\ 13 chr19:35995014-35995514 3.32e-01 100 chr19:38374256-38374756 5.46e-01 100 chr8:37698384-37698884 3.29e-01 3_[+6(7.93e-05)]_76 chr16:19536-20036 1.45e-03 10_[+6(7.20e-09)]_3_[+6(7.20e-09)]_\ 9_[+6(9.80e-08)]_15 chr5:175378371-175378871 5.44e-01 100 chr19:39412546-39413046 3.42e-02 47_[+6(2.01e-05)]_32 chr1:16872552-16873052 8.92e-01 100 chr9:85743217-85743717 6.07e-03 82_[-8(1.09e-06)]_6 chr19:40831776-40832276 3.70e-01 100 chr1:151281402-151281902 7.37e-01 100 chr15:65832553-65833053 7.82e-01 100 chr1:27364289-27364789 2.24e-01 100 chr14:103519208-10351970 7.01e-02 100 chr7:116218169-116218669 1.10e-02 80_[+4(8.51e-07)]_4 chr19:34134441-34134941 7.69e-04 59_[+6(3.54e-08)]_20 chr17:75368239-75368739 6.68e-18 4_[+1(1.54e-06)]_1_[+7(1.98e-12)]_\ 18_[-6(5.99e-05)]_2_[+4(5.79e-08)] chr20:31572599-31573099 1.36e-02 60_[-1(2.27e-07)]_24 chr19:38543974-38544474 4.41e-02 4_[-3(7.00e-06)]_87 chr8:37302601-37303101 5.73e-01 100 chr1:232678530-232679030 4.67e-01 100 chr19:38930028-38930528 8.23e-01 100 chr4:110904624-110905124 8.40e-01 100 chr11:73376989-73377489 1.67e-05 80_[+4(1.63e-09)]_4 chr16:15590886-15591386 3.05e-01 29_[-3(2.97e-05)]_62 chr19:35889351-35889851 3.42e-03 2_[-1(5.01e-06)]_3_[-1(1.19e-05)]_\ 63 chr17:39769871-39770371 1.02e-01 23_[-3(9.92e-05)]_11_[+3(9.22e-05)]_\ 48 chr17:21457041-21457541 7.84e-02 100 chr19:1383494-1383994 1.69e-01 2_[+6(7.93e-05)]_77 chr10:5548777-5549277 3.43e-01 67_[+8(1.02e-05)]_21 chr19:8389695-8390195 1.82e-02 69_[+1(1.55e-05)]_15 chr10:44752825-44753325 2.93e-02 38_[+10(7.60e-07)]_41 chr19:11344340-11344840 3.30e-02 89_[-3(2.22e-05)]_2 chr14:103520869-10352136 1.71e-02 21_[-6(9.72e-05)]_23_[+6(2.98e-06)]_\ 14 chr1:75724547-75725047 1.11e-01 62_[-6(6.43e-05)]_17 chr19:32972076-32972576 2.79e-04 10_[+9(4.00e-10)]_59 chr5:179818819-179819319 6.29e-02 88_[+3(2.97e-05)]_3 chr16:71426541-71427041 1.21e-01 100 chr10:75379136-75379636 4.01e-01 50_[+8(1.58e-05)]_38 chr4:705093-705593 3.67e-04 35_[+1(5.54e-06)]_20_[+6(9.36e-07)]_\ 8 chrX:48597665-48598165 7.90e-01 100 chr10:50463964-50464464 6.75e-03 20_[-4(1.80e-06)]_64 chr6:52243294-52243794 2.52e-01 45_[+2(6.89e-05)]_24 chr1:234723899-234724399 4.21e-03 5_[-6(2.38e-05)]_9_[-6(2.39e-06)]_\ 15_[-4(4.71e-05)]_13 chr1:150876709-150877209 2.42e-10 32_[+8(5.49e-05)]_25_[+9(1.20e-15)] chr9:18976634-18977134 1.61e-01 100 chr6:31959067-31959567 1.36e-03 4_[+1(1.70e-07)]_27_[+6(9.72e-05)]_\ 32 chr12:114914164-11491466 1.24e-02 22_[-6(1.52e-06)]_45_[-3(2.22e-05)]_\ 3 chr5:93582547-93583047 4.45e-02 26_[+4(3.37e-08)]_58 chr16:3156770-3157270 7.29e-06 3_[+5(4.31e-13)]_66 chr4:140756863-140757363 1.02e-03 8_[+1(1.69e-05)]_39_[-8(1.23e-05)]_\ 25 chr1:16727274-16727774 6.58e-01 100 chr15:74546040-74546540 8.27e-02 52_[-3(3.70e-05)]_39 chr1:26189293-26189793 3.40e-03 8_[+1(5.81e-08)]_19_[+1(2.20e-08)]_\ 16_[+1(1.07e-06)]_9 chr19:11402109-11402609 3.80e-02 6_[-1(3.91e-05)]_18_[+8(5.49e-05)]_\ 48 chr1:86774478-86774978 1.32e-01 100 chr7:133492058-133492558 2.17e-04 16_[+3(3.64e-06)]_50_[+8(7.70e-07)]_\ 13 chr15:71115101-71115601 9.92e-04 30_[-1(2.98e-07)]_6_[+6(2.98e-06)]_\ 27 chr1:16534892-16535392 6.76e-01 100 chr1:41870101-41870601 2.64e-03 28_[-3(3.64e-06)]_39_[-4(3.99e-06)]_\ 8 chr3:194134809-194135309 1.95e-05 8_[+6(2.67e-06)]_16_[-4(2.52e-06)]_\ 12_[+6(6.39e-07)]_6 chr9:137023127-137023627 5.75e-01 100 chr5:17305893-17306393 2.11e-04 27_[+8(2.58e-05)]_8_[-10(2.55e-06)]_\ 32 chr19:39125802-39126302 8.68e-03 5_[-1(9.53e-07)]_24_[-1(8.15e-06)]_\ 23_[-1(2.02e-05)] chr16:1651610-1652110 1.24e-01 46_[+8(7.48e-06)]_42 chr17:45320815-45321315 3.26e-03 1_[+5(4.46e-06)]_36_[-3(7.00e-06)]_\ 23 chr5:6419268-6419768 1.55e-04 1_[-10(1.65e-07)]_29_[+1(1.69e-05)]_\ 33 chr17:78558322-78558822 1.19e-02 12_[-8(4.46e-07)]_10_[-8(5.14e-06)]_\ 16_[-8(9.40e-06)]_8_[+8(5.45e-08)]_6 chrX:1392290-1392790 1.24e-03 78_[+1(8.47e-07)]_6 chr20:48921351-48921851 7.32e-03 43_[+6(2.39e-06)]_2_[+6(5.99e-05)]_\ 13 chr1:61057583-61058083 3.14e-21 18_[+5(4.21e-17)]_[+1(4.47e-07)]_3_\ [+7(9.77e-12)]_10 chr1:148264558-148265058 3.77e-01 100 chr5:124740978-124741478 1.48e-01 75_[+10(2.55e-07)]_4 chr19:6737913-6738413 1.10e-02 31_[+1(2.02e-05)]_53 chr19:11400849-11401349 2.99e-04 7_[-1(2.40e-05)]_16_[-1(1.07e-06)]_\ 45 chr1:943063-943563 5.27e-01 100 chr5:1801205-1801705 5.04e-01 100 chr6:24774967-24775467 3.88e-01 100 chr1:156660096-156660596 7.47e-07 21_[-3(2.97e-05)]_12_[+8(1.39e-06)]_\ 29_[+4(6.23e-06)]_1 chr1:35769976-35770476 1.08e-01 28_[+1(8.97e-06)]_56 chr15:70494069-70494569 2.11e-02 80_[+8(4.46e-07)]_8 chr6:167734991-167735491 3.46e-03 8_[+7(4.57e-05)]_3_[+1(2.40e-06)]_\ 10_[+1(2.20e-05)]_25 chr19:50406372-50406872 9.59e-04 1_[+1(2.98e-07)]_18_[-8(1.23e-05)]_\ 13_[+1(1.19e-05)]_24 chr19:36139805-36140305 5.38e-04 9_[-6(4.81e-05)]_35_[+6(9.92e-06)]_\ 14 chr12:31749162-31749662 5.56e-02 100 chr17:82065712-82066212 2.81e-04 9_[-1(1.07e-06)]_75 chr10:22552798-22553298 1.74e-01 29_[-8(6.96e-05)]_59 chr17:3890032-3890532 8.73e-01 100 chr16:30698965-30699465 1.54e-01 46_[-1(2.40e-05)]_38 chr22:50705019-50705519 3.90e-04 29_[+6(7.40e-05)]_33_[+1(1.03e-08)]_\ 1 chr6:2028598-2029098 6.00e-01 100 chr5:149551520-149552020 2.33e-01 100 chr19:38196256-38196756 1.13e-02 7_[-1(2.40e-05)]_23_[-1(8.97e-06)]_\ 4_[-1(2.40e-05)]_18 chr22:46762640-46763140 2.00e-06 16_[-6(4.14e-05)]_4_[-1(2.12e-09)]_\ 43 chr7:73522253-73522753 4.07e-03 2_[-1(1.93e-06)]_55_[-6(1.30e-05)]_\ 6 chr5:14156521-14157021 8.12e-03 67_[-3(6.48e-05)]_11_[+8(2.81e-05)]_\ 1 chr17:28725164-28725664 7.81e-01 100 chr5:59303213-59303713 2.16e-01 73_[+10(4.63e-05)]_6 chr5:352420-352920 1.62e-01 100 chr19:40612051-40612551 7.25e-03 22_[+1(7.75e-05)]_27_[+1(4.47e-07)]_\ 19 chr17:60173281-60173781 5.97e-02 51_[+8(1.11e-05)]_37 chr22:20117206-20117706 3.92e-03 82_[-1(7.80e-08)]_2 chr21:43857427-43857927 7.17e-33 10_[-2(3.96e-18)]_12_[-1(2.62e-07)]_\ [-5(1.74e-15)] chr7:150360022-150360522 3.54e-04 27_[-4(2.80e-08)]_2_[+3(3.64e-06)]_\ 46 chr19:727084-727584 8.99e-05 7_[+6(2.02e-08)]_50_[+6(1.06e-06)]_\ 1 chr1:974702-975202 5.41e-03 10_[-1(1.42e-05)]_26_[-1(1.72e-06)]_\ [-1(2.40e-06)]_16 chr1:31431786-31432286 6.11e-01 100 chr19:40750062-40750562 2.32e-02 32_[-1(6.10e-06)]_52 chr8:630777-631277 9.27e-02 [+3(2.97e-05)]_30_[+3(2.97e-05)]_37_\ [+3(2.22e-05)]_6 chr1:155244567-155245067 5.16e-01 26_[-6(1.35e-06)]_1_[-6(1.91e-06)]_\ 5_[-6(2.14e-06)]_5 chr6:27602218-27602718 6.93e-31 3_[+5(2.35e-17)]_[+1(1.70e-07)]_12_\ [+2(2.28e-16)]_7 chr10:21525609-21526109 8.06e-01 100 chr6:43321920-43322420 3.57e-03 4_[-3(3.70e-05)]_9_[-4(9.41e-05)]_\ 15_[-4(1.37e-06)]_31 chr17:7836626-7837126 2.02e-04 1_[-1(2.40e-06)]_15_[+8(2.23e-07)]_\ 56 chr19:43950925-43951425 8.42e-01 100 chr2:27890139-27890639 1.10e-01 36_[+1(3.67e-06)]_22_[+1(1.85e-05)]_\ 10 chr17:82586125-82586625 3.19e-03 12_[-1(7.40e-06)]_32_[-1(2.83e-05)]_\ [-6(3.28e-05)]_3 chr12:123383425-12338392 7.36e-01 100 chr6:27671963-27672463 3.01e-22 21_[+5(7.36e-18)]_[+1(9.11e-08)]_3_\ [+7(8.07e-12)]_7 chr1:27348762-27349262 3.18e-02 35_[+1(5.10e-07)]_2_[+1(9.53e-07)]_\ 13_[+1(3.33e-05)]_2 chr1:1239717-1240217 7.59e-04 35_[-1(2.68e-08)]_49 chr1:16122835-16123335 8.37e-01 100 chr19:58557933-58558433 1.91e-04 28_[+1(3.88e-07)]_56 chr14:20657035-20657535 5.60e-01 100 chr6:82260178-82260678 4.92e-01 44_[-10(7.89e-05)]_35 chr7:159013226-159013726 1.16e-04 17_[-6(4.54e-06)]_30_[-1(1.07e-06)]_\ 16 chr19:44813550-44814050 9.05e-05 10_[+1(2.68e-08)]_21_[+1(2.70e-10)]_\ 37 chr19:50415961-50416461 9.36e-02 20_[+1(1.93e-06)]_46_[+1(2.67e-06)]_\ 2 chr2:218568521-218569021 3.06e-04 73_[-1(9.11e-08)]_11 chr1:228452407-228452907 9.51e-06 12_[+1(2.02e-05)]_24_[+3(2.97e-05)]_\ 12_[+6(3.75e-07)]_6 chr12:51172719-51173219 5.00e-02 64_[-9(1.47e-05)]_5 chr5:1501653-1502153 8.96e-01 100 chr19:50790915-50791415 1.65e-02 16_[+1(1.36e-06)]_23_[+1(2.61e-05)]_\ 12_[+1(1.30e-05)]_1 chr11:65551585-65552085 1.09e-04 3_[-1(6.69e-05)]_17_[-1(1.21e-06)]_\ 48 chr1:236097026-236097526 6.04e-02 8_[+3(2.22e-05)]_20_[+3(2.22e-05)]_\ 20_[+3(2.22e-05)]_25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: indra ********************************************************************************